AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0118660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0118660 MtrunA17_Chr6g0467251 78.063 351 15 3 1 292 1 348 0.0 516
Msa0118660 MtrunA17_Chr6g0467121 46.839 348 125 4 1 288 33 380 1.46e-103 307
Msa0118660 MtrunA17_Chr6g0467161 45.370 324 119 2 9 274 15 338 3.56e-95 284
Msa0118660 MtrunA17_Chr2g0292151 36.677 319 132 7 39 287 29 347 9.77e-56 183
Msa0118660 MtrunA17_Chr3g0129051 33.234 334 149 7 1 272 1 322 3.39e-54 179
Msa0118660 MtrunA17_Chr3g0114451 32.075 318 150 5 11 268 3 314 3.19e-52 173
Msa0118660 MtrunA17_Chr2g0292241 34.564 298 127 5 39 268 29 326 3.80e-52 174
Msa0118660 MtrunA17_Chr2g0292111 35.065 308 132 6 39 278 29 336 2.59e-51 172
Msa0118660 MtrunA17_Chr2g0292211 33.663 303 133 5 34 268 35 337 4.87e-51 171
Msa0118660 MtrunA17_Chr2g0291751 35.599 309 129 7 39 278 29 336 1.32e-50 170
Msa0118660 MtrunA17_Chr2g0292091 35.570 298 124 6 39 268 24 321 1.65e-50 169
Msa0118660 MtrunA17_Chr7g0225221 33.564 289 130 4 42 268 28 316 4.67e-50 168
Msa0118660 MtrunA17_Chr1g0194151 32.836 335 151 8 8 272 3 333 1.31e-49 167
Msa0118660 MtrunA17_Chr7g0254231 34.266 286 132 3 39 268 22 307 3.90e-49 165
Msa0118660 MtrunA17_Chr5g0438021 31.875 320 150 7 15 272 12 325 5.86e-49 165
Msa0118660 MtrunA17_Chr2g0292261 33.123 317 144 5 39 287 29 345 1.05e-48 165
Msa0118660 MtrunA17_Chr5g0402581 35.974 303 128 7 32 268 20 322 1.09e-48 164
Msa0118660 MtrunA17_Chr1g0197411 34.323 303 122 8 39 268 28 326 1.17e-48 164
Msa0118660 MtrunA17_Chr4g0013201 35.932 295 128 5 34 268 41 334 1.88e-48 164
Msa0118660 MtrunA17_Chr4g0046131 32.927 328 147 7 12 268 17 342 2.19e-48 164
Msa0118660 MtrunA17_Chr2g0292251 32.390 318 146 7 39 287 28 345 2.38e-48 164
Msa0118660 MtrunA17_Chr2g0292291 34.448 299 127 5 39 268 30 328 2.81e-48 164
Msa0118660 MtrunA17_Chr1g0188431 33.798 287 131 4 39 268 39 323 5.20e-48 162
Msa0118660 MtrunA17_Chr5g0404721 32.550 298 134 5 43 273 34 331 5.93e-48 162
Msa0118660 MtrunA17_Chr1g0175561 31.751 337 144 8 3 268 1 322 7.26e-48 162
Msa0118660 MtrunA17_Chr2g0292271 32.803 314 143 5 39 284 29 342 7.89e-48 163
Msa0118660 MtrunA17_Chr4g0013191 34.535 333 146 7 7 268 5 336 1.03e-47 162
Msa0118660 MtrunA17_Chr2g0292181 32.886 298 132 6 39 268 38 335 1.40e-47 162
Msa0118660 MtrunA17_Chr7g0244461 31.724 290 137 4 39 268 20 308 1.62e-47 161
Msa0118660 MtrunA17_Chr8g0371381 33.898 295 125 7 39 268 26 315 3.55e-47 160
Msa0118660 MtrunA17_Chr6g0477071 32.192 292 131 5 38 268 53 338 4.68e-47 160
Msa0118660 MtrunA17_Chr2g0292101 33.893 298 129 6 39 268 25 322 6.02e-47 160
Msa0118660 MtrunA17_Chr5g0405991 32.997 297 129 7 37 268 21 312 1.05e-46 159
Msa0118660 MtrunA17_Chr5g0402571 32.738 336 150 7 3 272 1 326 1.09e-46 159
Msa0118660 MtrunA17_Chr4g0068621 33.220 295 132 7 39 268 38 332 2.66e-46 158
Msa0118660 MtrunA17_Chr2g0279041 31.804 327 153 6 11 272 4 325 3.22e-46 158
Msa0118660 MtrunA17_Chr4g0038161 33.445 299 132 5 39 272 24 320 5.01e-46 157
Msa0118660 MtrunA17_Chr3g0128061 31.987 297 135 4 39 268 26 322 5.51e-46 157
Msa0118660 MtrunA17_Chr4g0072091 34.000 300 132 5 39 272 24 323 8.89e-46 157
Msa0118660 MtrunA17_Chr3g0136751 32.317 328 149 6 9 272 4 322 9.71e-46 157
Msa0118660 MtrunA17_Chr4g0013171 30.816 331 157 7 4 272 1 321 9.82e-46 157
Msa0118660 MtrunA17_Chr1g0164891 32.770 296 129 6 43 268 93 388 1.04e-45 158
Msa0118660 MtrunA17_Chr7g0258811 30.769 325 149 7 13 268 50 367 1.48e-45 157
Msa0118660 MtrunA17_Chr4g0075241 31.761 318 145 9 22 268 7 323 1.63e-45 156
Msa0118660 MtrunA17_Chr3g0129061 31.138 334 156 6 1 272 1 322 1.77e-45 156
Msa0118660 MtrunA17_Chr5g0432441 32.132 333 150 9 1 268 1 322 2.10e-45 156
Msa0118660 MtrunA17_Chr2g0320101 32.056 287 134 4 42 268 28 313 3.23e-45 155
Msa0118660 MtrunA17_Chr4g0013721 31.879 298 134 7 43 274 104 398 3.26e-45 157
Msa0118660 MtrunA17_Chr4g0038151 32.107 299 136 4 39 272 25 321 3.27e-45 155
Msa0118660 MtrunA17_Chr2g0320071 32.056 287 134 4 42 268 28 313 3.67e-45 155
Msa0118660 MtrunA17_Chr2g0320091 33.333 288 130 6 42 268 28 314 5.34e-45 154
Msa0118660 MtrunA17_Chr1g0194271 31.287 342 154 7 8 272 3 340 5.80e-45 155
Msa0118660 MtrunA17_Chr1g0181431 28.956 297 148 5 35 268 23 319 9.27e-45 154
Msa0118660 MtrunA17_Chr1g0148021 31.595 326 151 7 11 268 3 324 2.46e-44 153
Msa0118660 MtrunA17_Chr7g0244451 31.973 294 139 4 39 272 24 316 3.23e-44 152
Msa0118660 MtrunA17_Chr2g0296621 31.959 291 134 7 39 268 50 337 4.17e-44 153
Msa0118660 MtrunA17_Chr8g0364291 31.894 301 135 6 42 273 26 325 4.75e-44 152
Msa0118660 MtrunA17_Chr4g0063671 33.784 296 130 5 39 268 21 316 5.33e-44 152
Msa0118660 MtrunA17_Chr4g0038171 33.333 300 132 6 39 272 24 321 6.54e-44 152
Msa0118660 MtrunA17_Chr5g0400331 31.457 302 135 6 39 268 26 327 1.01e-43 152
Msa0118660 MtrunA17_Chr4g0043391 32.326 331 148 8 10 272 2 324 1.21e-43 151
Msa0118660 MtrunA17_Chr4g0013821 31.250 304 140 7 43 280 32 332 1.71e-43 151
Msa0118660 MtrunA17_Chr7g0254201 31.457 302 146 5 33 274 14 314 3.63e-43 150
Msa0118660 MtrunA17_Chr4g0053871 32.653 294 134 5 39 268 27 320 4.63e-43 150
Msa0118660 MtrunA17_Chr6g0460711 30.667 300 148 5 33 272 15 314 5.98e-43 149
Msa0118660 MtrunA17_Chr1g0181481 27.986 293 148 5 39 268 27 319 1.87e-42 148
Msa0118660 MtrunA17_Chr3g0106921 31.975 319 144 6 13 268 8 316 2.56e-42 147
Msa0118660 MtrunA17_Chr1g0157051 31.034 319 146 7 15 268 5 314 2.87e-42 147
Msa0118660 MtrunA17_Chr4g0076211 32.867 286 129 6 44 268 46 329 5.90e-42 147
Msa0118660 MtrunA17_Chr1g0181511 29.010 293 145 6 39 268 27 319 5.98e-42 147
Msa0118660 MtrunA17_Chr4g0024121 28.173 323 157 9 13 268 8 322 6.59e-42 147
Msa0118660 MtrunA17_Chr4g0070951 31.208 298 137 6 39 268 28 325 1.39e-41 146
Msa0118660 MtrunA17_Chr5g0401431 32.087 321 145 6 21 268 5 325 1.54e-41 146
Msa0118660 MtrunA17_Chr8g0372601 30.034 293 138 5 43 268 34 326 2.00e-41 145
Msa0118660 MtrunA17_Chr2g0299691 30.841 321 149 7 17 268 38 354 2.09e-41 146
Msa0118660 MtrunA17_Chr3g0106901 31.034 319 150 5 10 268 11 319 2.44e-41 145
Msa0118660 MtrunA17_Chr2g0320061 31.250 288 136 6 42 268 28 314 3.38e-41 145
Msa0118660 MtrunA17_Chr2g0320051 31.250 288 136 5 42 268 28 314 1.92e-40 142
Msa0118660 MtrunA17_Chr3g0129041 31.437 334 155 6 1 272 1 322 2.57e-40 142
Msa0118660 MtrunA17_Chr1g0155611 31.438 299 137 5 38 268 45 343 6.05e-40 142
Msa0118660 MtrunA17_Chr4g0074851 27.778 324 168 6 17 274 7 330 6.07e-40 142
Msa0118660 MtrunA17_Chr2g0320031 29.653 317 154 7 13 268 7 315 1.12e-39 140
Msa0118660 MtrunA17_Chr5g0423911 86.667 75 10 0 202 276 1 75 1.44e-39 134
Msa0118660 MtrunA17_Chr7g0268501 29.102 323 156 10 16 272 5 320 1.97e-39 140
Msa0118660 MtrunA17_Chr7g0268521 29.102 323 156 10 16 272 5 320 1.97e-39 140
Msa0118660 MtrunA17_Chr2g0322861 29.900 301 145 7 39 273 87 387 3.82e-39 141
Msa0118660 MtrunA17_Chr1g0213061 29.607 331 162 8 13 281 9 330 3.60e-38 137
Msa0118660 MtrunA17_Chr6g0451571 30.201 298 139 6 39 268 34 330 1.37e-37 135
Msa0118660 MtrunA17_Chr2g0316791 29.664 327 133 7 39 268 76 402 4.13e-37 136
Msa0118660 MtrunA17_Chr7g0224371 28.772 285 143 4 43 268 35 318 1.41e-36 132
Msa0118660 MtrunA17_Chr2g0329641 28.261 322 164 6 13 268 11 331 2.18e-36 132
Msa0118660 MtrunA17_Chr2g0316481 29.052 327 135 7 39 268 76 402 2.58e-36 134
Msa0118660 MtrunA17_Chr2g0316191 28.963 328 135 7 39 268 76 403 5.29e-36 133
Msa0118660 MtrunA17_Chr4g0013181 29.352 293 144 6 42 272 62 353 6.85e-36 132
Msa0118660 MtrunA17_Chr1g0204011 29.938 324 152 8 9 268 6 318 2.31e-35 129
Msa0118660 MtrunA17_Chr2g0316831 29.052 327 135 7 39 268 112 438 4.21e-35 131
Msa0118660 MtrunA17_Chr3g0107881 31.193 327 139 13 13 268 9 320 1.38e-34 127
Msa0118660 MtrunA17_Chr5g0421411 30.403 273 113 7 70 268 12 281 2.04e-33 123
Msa0118660 MtrunA17_Chr2g0279061 33.624 229 109 4 87 272 38 266 7.37e-33 121
Msa0118660 MtrunA17_Chr5g0432351 27.900 319 158 8 14 268 7 317 4.25e-32 121
Msa0118660 MtrunA17_Chr2g0311241 26.975 367 131 8 39 268 60 426 1.02e-31 122
Msa0118660 MtrunA17_Chr4g0004591 30.690 290 127 5 39 268 77 352 2.63e-31 119
Msa0118660 MtrunA17_Chr2g0311251 28.614 332 129 10 39 268 11 336 6.09e-31 118
Msa0118660 MtrunA17_Chr2g0292281 35.610 205 82 5 105 268 17 212 3.93e-30 114
Msa0118660 MtrunA17_Chr5g0432341 28.527 319 156 9 14 268 7 317 4.81e-30 115
Msa0118660 MtrunA17_Chr2g0278671 28.000 300 150 5 39 272 24 323 1.32e-29 114
Msa0118660 MtrunA17_Chr5g0432331 27.301 326 166 9 7 268 30 348 4.11e-28 110
Msa0118660 MtrunA17_Chr5g0432401 30.464 302 150 13 6 268 2 282 8.04e-27 106
Msa0118660 MtrunA17_Chr5g0413051 26.471 306 152 6 39 272 73 377 3.03e-26 106
Msa0118660 MtrunA17_Chr3g0114461 34.054 185 86 4 123 272 9 192 7.25e-26 101
Msa0118660 MtrunA17_Chr1g0181501 36.719 128 76 2 146 268 58 185 1.34e-22 92.4
Msa0118660 MtrunA17_Chr2g0316811 38.889 126 50 3 39 137 50 175 7.33e-18 82.4
Msa0118660 MtrunA17_Chr2g0316141 27.542 236 118 5 86 268 39 274 7.55e-18 81.6
Msa0118660 MtrunA17_Chr2g0316181 27.542 236 118 5 86 268 39 274 7.55e-18 81.6
Msa0118660 MtrunA17_Chr7g0268491 40.449 89 52 1 180 268 6 93 1.47e-14 68.2
Msa0118660 MtrunA17_Chr3g0114491 32.381 105 45 1 42 120 21 125 1.70e-13 66.6
Msa0118660 MtrunA17_Chr2g0316771 26.667 165 84 2 141 268 18 182 2.20e-13 67.4
Msa0118660 MtrunA17_Chr3g0104101 31.387 137 82 4 144 268 9 145 1.47e-11 61.2
Msa0118660 MtrunA17_Chr7g0254181 34.409 93 49 2 46 138 4 84 2.26e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0118660 AT1G71695.1 39.080 348 142 5 13 292 12 357 2.62e-79 244
Msa0118660 AT5G14130.1 31.928 332 152 4 6 272 8 330 3.69e-54 179
Msa0118660 AT5G14130.2 31.928 332 152 4 6 272 49 371 9.08e-54 179
Msa0118660 AT4G08770.1 33.438 320 142 6 43 292 28 346 1.54e-53 178
Msa0118660 AT4G08780.1 33.750 320 141 6 43 292 28 346 6.74e-53 176
Msa0118660 AT5G64120.1 33.125 320 154 4 13 272 9 328 1.25e-52 175
Msa0118660 AT5G19880.1 34.884 301 125 6 39 268 25 325 1.54e-51 172
Msa0118660 AT5G06730.1 30.636 346 166 7 1 278 1 340 6.56e-51 171
Msa0118660 AT3G32980.1 32.000 350 157 7 9 288 7 345 7.01e-50 169
Msa0118660 AT3G49120.1 31.214 346 157 7 13 288 12 346 7.39e-49 166
Msa0118660 AT2G18980.1 34.663 326 140 8 8 268 2 319 8.20e-49 165
Msa0118660 AT5G06720.1 30.841 321 151 6 16 268 12 329 1.15e-48 165
Msa0118660 AT2G18140.1 30.448 335 165 6 7 273 2 336 1.27e-48 165
Msa0118660 AT3G49110.1 32.595 316 138 7 43 288 37 347 1.74e-48 165
Msa0118660 AT2G38390.1 34.768 302 128 7 42 274 34 335 1.95e-48 165
Msa0118660 AT5G58400.1 31.915 329 151 6 7 272 7 325 2.91e-48 164
Msa0118660 AT4G33420.1 32.476 311 151 4 19 272 17 325 5.94e-48 163
Msa0118660 AT4G37520.1 33.993 303 131 6 39 272 27 329 9.04e-48 162
Msa0118660 AT2G22420.1 31.288 326 148 6 14 274 7 321 1.46e-47 162
Msa0118660 AT4G33420.2 32.476 311 151 4 19 272 64 372 2.53e-47 162
Msa0118660 AT4G30170.1 34.237 295 129 5 39 268 27 321 7.84e-47 160
Msa0118660 AT2G24800.1 33.000 300 134 5 39 272 31 329 9.02e-47 160
Msa0118660 AT4G37530.1 32.903 310 136 7 32 272 23 329 1.00e-46 160
Msa0118660 AT5G15180.1 29.653 317 156 5 16 268 12 325 2.85e-46 159
Msa0118660 AT1G14540.1 31.269 323 152 7 11 272 2 315 4.12e-46 158
Msa0118660 AT3G17070.1 29.429 333 163 6 4 268 7 335 4.25e-46 158
Msa0118660 AT2G38380.1 32.110 327 147 7 17 274 15 335 6.93e-46 158
Msa0118660 AT4G37520.2 33.663 303 129 7 39 272 27 326 7.75e-46 157
Msa0118660 AT5G39580.1 31.481 324 152 5 10 272 5 319 1.12e-45 157
Msa0118660 AT2G41480.1 32.308 325 150 7 14 272 8 328 1.23e-45 157
Msa0118660 AT2G18150.1 29.464 336 168 7 7 273 2 337 1.27e-45 157
Msa0118660 AT1G49570.1 33.224 304 132 6 39 272 48 350 1.49e-45 157
Msa0118660 AT5G47000.1 32.249 338 157 6 1 273 1 331 4.58e-45 155
Msa0118660 AT5G05340.1 31.419 296 140 4 39 272 30 324 5.39e-45 155
Msa0118660 AT4G36430.1 30.717 293 136 5 43 268 34 326 8.23e-45 155
Msa0118660 AT1G30870.1 32.776 299 136 8 39 274 51 347 9.37e-44 152
Msa0118660 AT1G14550.1 31.250 320 151 7 11 268 5 317 1.10e-43 152
Msa0118660 AT4G16270.1 33.670 297 128 8 39 268 50 344 1.22e-43 152
Msa0118660 AT3G28200.1 32.323 297 137 6 39 272 21 316 1.72e-43 151
Msa0118660 AT3G01190.1 30.537 298 145 6 37 272 24 321 2.53e-43 150
Msa0118660 AT3G50990.1 30.263 304 145 7 32 268 34 337 3.17e-43 151
Msa0118660 AT2G34060.1 30.321 343 163 8 1 268 1 342 3.36e-43 151
Msa0118660 AT1G24110.1 31.611 329 150 8 17 276 4 326 4.26e-43 150
Msa0118660 AT5G40150.1 32.660 297 137 6 39 272 32 328 4.42e-43 150
Msa0118660 AT5G19890.1 32.119 302 135 7 39 273 30 328 4.76e-43 150
Msa0118660 AT2G35380.1 33.010 309 127 8 34 268 29 331 9.12e-43 149
Msa0118660 AT5G17820.1 29.846 325 153 6 3 268 1 309 9.84e-43 149
Msa0118660 AT3G03670.1 30.820 305 146 5 33 272 17 321 1.64e-42 149
Msa0118660 AT5G42180.1 30.201 298 139 6 36 268 20 313 2.07e-42 148
Msa0118660 AT5G58390.1 30.312 320 153 5 16 272 4 316 3.05e-42 148
Msa0118660 AT5G17820.2 29.846 325 153 6 3 268 54 362 8.42e-42 148
Msa0118660 AT3G49960.1 32.622 328 150 8 14 272 4 329 9.15e-42 147
Msa0118660 AT5G67400.1 32.343 303 136 6 39 272 27 329 1.02e-41 147
Msa0118660 AT5G66390.1 30.034 293 138 5 43 268 37 329 1.60e-41 146
Msa0118660 AT4G17690.1 32.226 301 138 5 31 268 21 318 3.34e-41 145
Msa0118660 AT4G31760.1 30.061 326 154 6 11 272 11 326 1.16e-40 144
Msa0118660 AT4G26010.1 31.056 322 146 7 11 273 6 310 1.25e-40 143
Msa0118660 AT4G21960.1 28.349 321 167 5 15 272 7 327 1.68e-40 144
Msa0118660 AT4G26010.2 31.056 322 146 7 11 273 34 338 1.73e-40 144
Msa0118660 AT2G39040.1 32.450 302 131 10 39 268 46 346 4.64e-40 143
Msa0118660 AT1G68850.1 29.483 329 159 8 12 268 4 331 5.56e-40 142
Msa0118660 AT1G05240.1 29.333 300 146 5 39 272 26 325 8.93e-40 141
Msa0118660 AT1G05250.1 29.333 300 146 5 39 272 26 325 8.93e-40 141
Msa0118660 AT1G44970.1 32.550 298 133 6 43 272 49 346 1.43e-39 141
Msa0118660 AT2G37130.1 29.252 294 144 7 39 268 30 323 1.97e-39 140
Msa0118660 AT2G37130.2 29.210 291 142 7 42 268 2 292 3.87e-39 139
Msa0118660 AT5G51890.1 30.976 297 138 6 34 265 21 315 5.82e-39 139
Msa0118660 AT5G24070.1 28.529 333 165 7 13 272 3 335 3.95e-38 137
Msa0118660 AT5G64110.1 31.399 293 138 5 43 272 38 330 5.88e-38 137
Msa0118660 AT3G21770.1 28.041 296 147 7 39 268 29 324 1.10e-37 136
Msa0118660 AT4G11290.1 28.859 298 144 7 39 268 25 322 2.61e-37 135
Msa0118660 AT1G05260.1 27.243 301 153 6 39 273 26 326 7.16e-37 134
Msa0118660 AT5G64100.1 29.305 331 168 7 7 272 2 331 8.21e-37 134
Msa0118660 AT4G37530.2 33.333 258 100 7 32 220 23 277 3.50e-36 131
Msa0118660 AT1G77100.1 29.392 296 147 5 39 272 24 319 4.83e-36 131
Msa0118660 AT4G33870.1 28.485 330 136 7 39 268 68 397 7.86e-35 130
Msa0118660 AT2G35380.2 33.913 230 102 5 87 268 16 243 1.45e-34 126
Msa0118660 AT1G34510.1 29.000 300 149 6 33 273 16 310 1.50e-34 127
Msa0118660 AT5G22410.1 29.000 300 147 9 39 273 28 326 5.40e-34 126
Msa0118660 AT3G17070.2 31.364 220 109 3 91 268 53 272 8.93e-33 122
Msa0118660 AT2G43480.1 26.032 315 166 6 21 268 17 331 3.45e-32 122
Msa0118660 AT4G25980.1 26.910 301 153 5 39 272 26 326 1.37e-30 117
Msa0118660 AT2G24800.2 37.190 121 54 1 39 137 31 151 2.31e-18 82.8
Msa0118660 AT5G39580.2 31.544 149 71 2 11 137 6 145 4.11e-17 79.0
Msa0118660 AT4G25980.2 31.148 122 61 1 39 137 71 192 1.47e-14 72.8

Find 56 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTAGATTTCCTATTATT+TGG 0.128628 1_3:+41713810 None:intergenic
ATCCCTCAACGCCGTTAATT+TGG 0.182797 1_3:-41714069 Msa0118660:CDS
TCGAGTTGTTTCTTGAAATT+TGG 0.220080 1_3:+41714113 None:intergenic
CTATCTGGTGCTCACACTTT+TGG 0.254398 1_3:-41714194 Msa0118660:CDS
CCCAATGGCACGTCAAAATC+TGG 0.255614 1_3:+41714342 None:intergenic
CTTACAATCCTTTCAATCCT+TGG 0.318088 1_3:+41716882 None:intergenic
ATGCGTTTACACTGAAGTTT+AGG 0.360294 1_3:+41714307 None:intergenic
TCCAAATAATAGGAAATCTA+AGG 0.367020 1_3:-41713811 Msa0118660:CDS
TTCACAATCTCCTTAGTCTT+AGG 0.369697 1_3:+41713951 None:intergenic
ACCGATGTAGTTGCTCTATC+TGG 0.387253 1_3:-41714209 Msa0118660:intron
TGAAATTTGGTTCGATTGGC+GGG 0.393247 1_3:+41714126 None:intergenic
CTTGAATTTGTACAGTTTGG+AGG 0.394165 1_3:-41714366 Msa0118660:intron
TTCTTGAAATTTGGTTCGAT+TGG 0.399248 1_3:+41714122 None:intergenic
GACTAGACTATGATTTCTAT+TGG 0.405781 1_3:-41716914 Msa0118660:CDS
TTGAAATTTGGTTCGATTGG+CGG 0.417306 1_3:+41714125 None:intergenic
TACATATTATCGAATGTGTT+TGG 0.420413 1_3:+41714035 None:intergenic
ATGATTCGGTTGAACATTGT+AGG 0.430995 1_3:+41714158 None:intergenic
ATCCAAATTAACGGCGTTGA+GGG 0.446693 1_3:+41714067 None:intergenic
GGCAAGTCATCCTAAGACTA+AGG 0.457751 1_3:-41713961 Msa0118660:CDS
CAAGGATTGAAAGGATTGTA+AGG 0.463937 1_3:-41716881 Msa0118660:CDS
GCGTTGAGGGATTCCTCATT+CGG 0.481214 1_3:+41714080 None:intergenic
CAACTCGTGGACATTGCTTA+CGG 0.486794 1_3:+41715892 None:intergenic
ATTTGGTTCGATTGGCGGGT+CGG 0.494109 1_3:+41714130 None:intergenic
ATCTGTGGTGGAAGAGGTGG+TGG 0.508484 1_3:-41713784 Msa0118660:CDS
CCAATGGCACGTCAAAATCT+GGG 0.508698 1_3:+41714343 None:intergenic
AGCAAGTCCTCCTGCTGTGA+GGG 0.509248 1_3:-41716937 Msa0118660:CDS
GCGGGTCGGAATCAATGATT+CGG 0.511844 1_3:+41714144 None:intergenic
AAGGATAGTGGTCAAGCTCC+TGG 0.512801 1_3:-41716834 Msa0118660:CDS
CATTAACCTCTTGAATCACC+AGG 0.518011 1_3:-41714009 Msa0118660:CDS
ATACCTGGGAAAAGCAATCA+TGG 0.522677 1_3:+41716793 None:intergenic
TCTATTGGTTGTCATGTCCA+AGG 0.523388 1_3:-41716899 Msa0118660:CDS
TGTTCGAAGATCCAAATTAA+CGG 0.529039 1_3:+41714058 None:intergenic
TAGTCTAGTCCCCTCACAGC+AGG 0.532120 1_3:+41716927 None:intergenic
CTTCGCGTGCGGCGATGACA+AGG 0.534915 1_3:+41715853 None:intergenic
GTTTACATCGGATCAAGACT+TGG 0.534996 1_3:-41713982 Msa0118660:CDS
GATCCAAATTAACGGCGTTG+AGG 0.540024 1_3:+41714066 None:intergenic
CGAAGCTACATGTCCGAATG+AGG 0.546652 1_3:-41714093 Msa0118660:CDS
CTACTCTCTCAGAGGAAACA+AGG 0.549748 1_3:+41716958 None:intergenic
TGTCATGTCCAAGGATTGAA+AGG 0.555771 1_3:-41716890 Msa0118660:CDS
GGTGACATCTGTGGTGGAAG+AGG 0.564932 1_3:-41713790 Msa0118660:CDS
GACATCTGTGGTGGAAGAGG+TGG 0.570706 1_3:-41713787 Msa0118660:CDS
CTTTCTGGTTAGAAGCAAAG+TGG 0.576026 1_3:+41713928 None:intergenic
TCTGCGCACGAGACAACTCG+TGG 0.586025 1_3:+41715879 None:intergenic
TTGGCGAACAGCTTCGCGTG+CGG 0.588097 1_3:+41715842 None:intergenic
TATAGCACGAAGGTTCTCAA+TGG 0.596636 1_3:+41715917 None:intergenic
ATCTAAGGTGACATCTGTGG+TGG 0.607579 1_3:-41713796 Msa0118660:CDS
TCTAGTCCCCTCACAGCAGG+AGG 0.639178 1_3:+41716930 None:intergenic
ACATACCCTGGTGATTCAAG+AGG 0.641052 1_3:+41714003 None:intergenic
GATCCGATGTAAACATACCC+TGG 0.644253 1_3:+41713991 None:intergenic
GCAAGTCCTCCTGCTGTGAG+GGG 0.644826 1_3:-41716936 Msa0118660:CDS
GAAATCTAAGGTGACATCTG+TGG 0.648856 1_3:-41713799 Msa0118660:CDS
TAGCAAGTCCTCCTGCTGTG+AGG 0.654852 1_3:-41716938 Msa0118660:CDS
TCACCAGGGTATGTTTACAT+CGG 0.661973 1_3:-41713994 Msa0118660:CDS
AGGACTTGCTACTCTCTCAG+AGG 0.697336 1_3:+41716950 None:intergenic
ATTAACCTCTTGAATCACCA+GGG 0.706268 1_3:-41714008 Msa0118660:CDS
GCTTACGGATTATAGCACGA+AGG 0.709375 1_3:+41715907 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATGACATTTATAAT+TGG - chr1_3:41715040-41715059 Msa0118660:intron 10.0%
!! ATACTATAAATTTATTTCAA+GGG + chr1_3:41715329-41715348 None:intergenic 10.0%
!! ATTTATAGTATCAAAATATT+TGG - chr1_3:41715338-41715357 Msa0118660:intron 10.0%
!!! GACTTAAAATAATTTTTTTT+TGG + chr1_3:41715581-41715600 None:intergenic 10.0%
!!! ACAGATCATATTTTATTAAA+TGG - chr1_3:41714129-41714148 Msa0118660:CDS 15.0%
!!! TGGATTTATATTTTTTTAAG+AGG - chr1_3:41714201-41714220 Msa0118660:CDS 15.0%
!!! AAAGTTAATTTTGAACAAAA+AGG - chr1_3:41714434-41714453 Msa0118660:intron 15.0%
!! CTGAAGAAAAAAAAAATTAA+AGG + chr1_3:41714534-41714553 None:intergenic 15.0%
!! AAATATTCATGGAAATAAAT+GGG + chr1_3:41714574-41714593 None:intergenic 15.0%
!! AAAATATTCATGGAAATAAA+TGG + chr1_3:41714575-41714594 None:intergenic 15.0%
!!! AAAGATTAAATGTTGATTTT+TGG - chr1_3:41714743-41714762 Msa0118660:intron 15.0%
!! ACACATAAATATAAATTACT+TGG + chr1_3:41714970-41714989 None:intergenic 15.0%
!! TACTATAAATTTATTTCAAG+GGG + chr1_3:41715328-41715347 None:intergenic 15.0%
!! GATACTATAAATTTATTTCA+AGG + chr1_3:41715330-41715349 None:intergenic 15.0%
!!! TGTATTATTTTCACTTTATA+CGG - chr1_3:41715633-41715652 Msa0118660:intron 15.0%
!!! TCAATATATTGTTTTAGTTA+AGG + chr1_3:41715674-41715693 None:intergenic 15.0%
!! AAAATCGTATAACAAAAGAA+TGG - chr1_3:41714157-41714176 Msa0118660:CDS 20.0%
!!! TTTTGTTTTTCTTATGTGTT+GGG + chr1_3:41714340-41714359 None:intergenic 20.0%
!!! ATTTTGTTTTTCTTATGTGT+TGG + chr1_3:41714341-41714360 None:intergenic 20.0%
!!! TGTTTTTCTCTATTACTAAT+AGG + chr1_3:41714480-41714499 None:intergenic 20.0%
!! TGTAAATAAAAAGATTGTGT+AGG + chr1_3:41714684-41714703 None:intergenic 20.0%
!! ACTATAAATTTATTTCAAGG+GGG + chr1_3:41715327-41715346 None:intergenic 20.0%
!!! AATTTTTTTTTGGTGTAAAC+CGG + chr1_3:41715571-41715590 None:intergenic 20.0%
!! ATAAAATTATTTACACTGAC+AGG - chr1_3:41715607-41715626 Msa0118660:intron 20.0%
!! TAAAATTATTTACACTGACA+GGG - chr1_3:41715608-41715627 Msa0118660:intron 20.0%
!!! ATATGCTTAATTGCATTTTT+AGG + chr1_3:41715698-41715717 None:intergenic 20.0%
!!! AATTTTTTTTGATCCGAAAA+CGG + chr1_3:41716554-41716573 None:intergenic 20.0%
!!! ATTTGTTAAAAAACTCTTTC+TGG + chr1_3:41716880-41716899 None:intergenic 20.0%
!!! TCTTGAAGATGTTTTTGAAA+AGG - chr1_3:41713937-41713956 Msa0118660:CDS 25.0%
!! ACGTTGATAAAAAGAAAGTA+AGG + chr1_3:41714044-41714063 None:intergenic 25.0%
!!! CCTATTGAATCATTTTTTAG+AGG + chr1_3:41714079-41714098 None:intergenic 25.0%
!! CCTCTAAAAAATGATTCAAT+AGG - chr1_3:41714076-41714095 Msa0118660:CDS 25.0%
! CTAATTTAGACCTGATATAA+CGG + chr1_3:41714109-41714128 None:intergenic 25.0%
!! ACAAAAACTCGATTTTTGAA+TGG - chr1_3:41714404-41714423 Msa0118660:intron 25.0%
! TATTACTAATAGGCTTAACT+TGG + chr1_3:41714470-41714489 None:intergenic 25.0%
!!! TTGATTTTTGGATTGAAACA+TGG - chr1_3:41714755-41714774 Msa0118660:intron 25.0%
!!! ATTTTGTTGAATGGTGTTAA+CGG - chr1_3:41714791-41714810 Msa0118660:intron 25.0%
! CTTTGCGATTAAAATAATTG+AGG + chr1_3:41715158-41715177 None:intergenic 25.0%
!!! GAACATCATTCATACTTTTT+TGG - chr1_3:41715727-41715746 Msa0118660:intron 25.0%
! AAGTGACATAATGTTAAATG+TGG + chr1_3:41715753-41715772 None:intergenic 25.0%
! TGATTGAGAATACAAACAAA+AGG - chr1_3:41715838-41715857 Msa0118660:intron 25.0%
!!! TTTTTAGGGTGTTTATTTTC+GGG + chr1_3:41715884-41715903 None:intergenic 25.0%
!!! GTTTTTAGGGTGTTTATTTT+CGG + chr1_3:41715885-41715904 None:intergenic 25.0%
! TACATATTATCGAATGTGTT+TGG + chr1_3:41716758-41716777 None:intergenic 25.0%
!!! ATTTGCTAATGCTTTTGTTA+AGG - chr1_3:41716898-41716917 Msa0118660:CDS 25.0%
!!! TTTTGTTAAGGTTAGTCAAT+TGG - chr1_3:41716910-41716929 Msa0118660:CDS 25.0%
! TCCAAATAATAGGAAATCTA+AGG - chr1_3:41716979-41716998 Msa0118660:CDS 25.0%
! ACCTTAGATTTCCTATTATT+TGG + chr1_3:41716983-41717002 None:intergenic 25.0%
GACTAGACTATGATTTCTAT+TGG - chr1_3:41713876-41713895 Msa0118660:CDS 30.0%
!! GATGTTTTTGAAAAGGATAG+TGG - chr1_3:41713944-41713963 Msa0118660:CDS 30.0%
AAGAATCTTAAGTCATACCT+GGG + chr1_3:41714014-41714033 None:intergenic 30.0%
ATCGTATAACAAAAGAATGG+AGG - chr1_3:41714160-41714179 Msa0118660:CDS 30.0%
TTCAATCTTAGCACTTCTTA+TGG + chr1_3:41714261-41714280 None:intergenic 30.0%
!! TAAGAAGTGCTAAGATTGAA+AGG - chr1_3:41714261-41714280 Msa0118660:intron 30.0%
AAATATGTTGTGACTACTCT+TGG + chr1_3:41714364-41714383 None:intergenic 30.0%
! AAAACTCGATTTTTGAATGG+AGG - chr1_3:41714407-41714426 Msa0118660:intron 30.0%
!! TAATAGGCTTAACTTGGTTT+TGG + chr1_3:41714464-41714483 None:intergenic 30.0%
TGCAGTCACAAAAATATTCA+TGG + chr1_3:41714585-41714604 None:intergenic 30.0%
! GATGCATCTATTTTGTTGAA+TGG - chr1_3:41714782-41714801 Msa0118660:intron 30.0%
TAACAAACCAGGTGATAAAT+AGG + chr1_3:41715271-41715290 None:intergenic 30.0%
TTGTTTGTATTCTCAATCAC+CGG + chr1_3:41715837-41715856 None:intergenic 30.0%
!!! TTTTAGGGGTGTTTATCTTT+GGG + chr1_3:41716016-41716035 None:intergenic 30.0%
!!! TTTTTAGGGGTGTTTATCTT+TGG + chr1_3:41716017-41716036 None:intergenic 30.0%
!! ATCACTTTTGATTCAAGATC+GGG + chr1_3:41716191-41716210 None:intergenic 30.0%
!! GATCACTTTTGATTCAAGAT+CGG + chr1_3:41716192-41716211 None:intergenic 30.0%
GATCTTGAATCAAAAGTGAT+CGG - chr1_3:41716191-41716210 Msa0118660:intron 30.0%
ACTTTATGACCAAATCAGAA+GGG - chr1_3:41716222-41716241 Msa0118660:intron 30.0%
! TGTCTAACTGCAATTTTGTT+TGG + chr1_3:41716289-41716308 None:intergenic 30.0%
! GTTAATTTTGCTTCAAGATC+GGG + chr1_3:41716318-41716337 None:intergenic 30.0%
! GGTTAATTTTGCTTCAAGAT+CGG + chr1_3:41716319-41716338 None:intergenic 30.0%
GATCTTGAAGCAAAATTAAC+CGG - chr1_3:41716318-41716337 Msa0118660:intron 30.0%
TTCCTTGAATTTGTACAGTT+TGG - chr1_3:41716421-41716440 Msa0118660:intron 30.0%
! GATGAACTATTAACCGTTTT+CGG - chr1_3:41716538-41716557 Msa0118660:intron 30.0%
! TTCTTGAAATTTGGTTCGAT+TGG + chr1_3:41716671-41716690 None:intergenic 30.0%
!! TCGAGTTGTTTCTTGAAATT+TGG + chr1_3:41716680-41716699 None:intergenic 30.0%
TGTTCGAAGATCCAAATTAA+CGG + chr1_3:41716735-41716754 None:intergenic 30.0%
! CATGTTTTGCTCCAAATAAT+AGG - chr1_3:41716969-41716988 Msa0118660:CDS 30.0%
CTTACAATCCTTTCAATCCT+TGG + chr1_3:41713911-41713930 None:intergenic 35.0%
CAAGGATTGAAAGGATTGTA+AGG - chr1_3:41713909-41713928 Msa0118660:CDS 35.0%
GAAGAATCTTAAGTCATACC+TGG + chr1_3:41714015-41714034 None:intergenic 35.0%
ATTTAGACCTGATATAACGG+TGG + chr1_3:41714106-41714125 None:intergenic 35.0%
CAAAATGCGCCAAAACATAT+CGG - chr1_3:41714305-41714324 Msa0118660:intron 35.0%
! TTGATATCGCCGATATGTTT+TGG + chr1_3:41714317-41714336 None:intergenic 35.0%
GTCACAACATATTTCACAAG+TGG - chr1_3:41714370-41714389 Msa0118660:intron 35.0%
!! ATAATTGAGTTGACATCTCG+TGG - chr1_3:41714650-41714669 Msa0118660:intron 35.0%
AATTGAGGCATGTAAGATCA+AGG + chr1_3:41715143-41715162 None:intergenic 35.0%
! ATTTCAAGGGGGTATAAGAA+TGG + chr1_3:41715316-41715335 None:intergenic 35.0%
CAACAGCGTTAAAACTCTTA+GGG - chr1_3:41715476-41715495 Msa0118660:intron 35.0%
!! GTTGGATATCGTTTTTACAG+TGG + chr1_3:41715972-41715991 None:intergenic 35.0%
!! TTTAGGGGTGTTTATCTTTG+GGG + chr1_3:41716015-41716034 None:intergenic 35.0%
!!! ACGGGAGGTTTATTTTTTAG+GGG + chr1_3:41716030-41716049 None:intergenic 35.0%
!!! GACGGGAGGTTTATTTTTTA+GGG + chr1_3:41716031-41716050 None:intergenic 35.0%
! CTTTTTATGGTTTCTTTCGG+TGG + chr1_3:41716134-41716153 None:intergenic 35.0%
! GGGCTTTTTATGGTTTCTTT+CGG + chr1_3:41716137-41716156 None:intergenic 35.0%
!!! TTGAGGTTTTGGGCTTTTTA+TGG + chr1_3:41716147-41716166 None:intergenic 35.0%
!! TCTGATTTGGTCATAAAGTC+TGG + chr1_3:41716221-41716240 None:intergenic 35.0%
GACTTTATGACCAAATCAGA+AGG - chr1_3:41716221-41716240 Msa0118660:intron 35.0%
!! CAATTTTGTTTGGCGTGATT+TGG + chr1_3:41716279-41716298 None:intergenic 35.0%
!!! CTTTTTTGTGTGCTGATTTC+CGG + chr1_3:41716348-41716367 None:intergenic 35.0%
ACAAATGACATGATATGCAG+TGG - chr1_3:41716372-41716391 Msa0118660:intron 35.0%
GCAATTAAGTGACGTAATCT+GGG + chr1_3:41716401-41716420 None:intergenic 35.0%
AGCAATTAAGTGACGTAATC+TGG + chr1_3:41716402-41716421 None:intergenic 35.0%
CTCCAAACTGTACAAATTCA+AGG + chr1_3:41716426-41716445 None:intergenic 35.0%
CTTGAATTTGTACAGTTTGG+AGG - chr1_3:41716424-41716443 Msa0118660:intron 35.0%
ATGCGTTTACACTGAAGTTT+AGG + chr1_3:41716486-41716505 None:intergenic 35.0%
!! ATGATTCGGTTGAACATTGT+AGG + chr1_3:41716635-41716654 None:intergenic 35.0%
! TTGAAATTTGGTTCGATTGG+CGG + chr1_3:41716668-41716687 None:intergenic 35.0%
ATTAACCTCTTGAATCACCA+GGG - chr1_3:41716782-41716801 Msa0118660:intron 35.0%
! TTCACAATCTCCTTAGTCTT+AGG + chr1_3:41716842-41716861 None:intergenic 35.0%
!!! AGTCAATTGGATGTTTTGAC+TGG - chr1_3:41716923-41716942 Msa0118660:CDS 35.0%
!!! GATGTTTTGACTGGAAATCA+AGG - chr1_3:41716932-41716951 Msa0118660:CDS 35.0%
! TCTATTGGTTGTCATGTCCA+AGG - chr1_3:41713891-41713910 Msa0118660:CDS 40.0%
TGTCATGTCCAAGGATTGAA+AGG - chr1_3:41713900-41713919 Msa0118660:CDS 40.0%
AAAAAGAGTCTGAGTATGCC+AGG + chr1_3:41713977-41713996 None:intergenic 40.0%
!! TTTCCATGATTGCTTTTCCC+AGG - chr1_3:41713994-41714013 Msa0118660:CDS 40.0%
ATACCTGGGAAAAGCAATCA+TGG + chr1_3:41714000-41714019 None:intergenic 40.0%
!! GGAGAGCAAAAGTATTAACG+TGG - chr1_3:41714181-41714200 Msa0118660:CDS 40.0%
TATAGCACGAAGGTTCTCAA+TGG + chr1_3:41714876-41714895 None:intergenic 40.0%
CTCTCAACCTATTTATCACC+TGG - chr1_3:41715261-41715280 Msa0118660:intron 40.0%
! GTTTGTTAACTCCCTTGTCT+AGG - chr1_3:41715283-41715302 Msa0118660:intron 40.0%
!!! ATGGTTTTGTGCCTAGACAA+GGG + chr1_3:41715297-41715316 None:intergenic 40.0%
!!! AATGGTTTTGTGCCTAGACA+AGG + chr1_3:41715298-41715317 None:intergenic 40.0%
GCAACAGCGTTAAAACTCTT+AGG - chr1_3:41715475-41715494 Msa0118660:intron 40.0%
!! GGAGAGCTTGTTATCCATTT+AGG - chr1_3:41715497-41715516 Msa0118660:intron 40.0%
!! AAACAAAAGGCGCCGTATAT+AGG - chr1_3:41715851-41715870 Msa0118660:CDS 40.0%
!!! TGACGAGTATTTTGATGGTG+TGG + chr1_3:41715919-41715938 None:intergenic 40.0%
! TTCGTGAAGGAGTCTGTTTT+AGG + chr1_3:41715945-41715964 None:intergenic 40.0%
!! GGATATCGTTTTTACAGTGG+TGG + chr1_3:41715969-41715988 None:intergenic 40.0%
!! TTAGGGGTGTTTATCTTTGG+GGG + chr1_3:41716014-41716033 None:intergenic 40.0%
!!! GGACGGGAGGTTTATTTTTT+AGG + chr1_3:41716032-41716051 None:intergenic 40.0%
TTTCGATTGTGGCTCAACTT+TGG + chr1_3:41716061-41716080 None:intergenic 40.0%
AGTTGAATGGTCTTTCGGTT+AGG + chr1_3:41716088-41716107 None:intergenic 40.0%
GTGGAAGTTGAATGGTCTTT+CGG + chr1_3:41716093-41716112 None:intergenic 40.0%
TATGGTTTCTTTCGGTGGAT+CGG + chr1_3:41716129-41716148 None:intergenic 40.0%
!! TGGCTCAAGTTTGAGGTTTT+GGG + chr1_3:41716157-41716176 None:intergenic 40.0%
!! TTGGCTCAAGTTTGAGGTTT+TGG + chr1_3:41716158-41716177 None:intergenic 40.0%
! AGTTCTTTGGCTCAAGTTTG+AGG + chr1_3:41716164-41716183 None:intergenic 40.0%
AATGACATGATATGCAGTGG+TGG - chr1_3:41716375-41716394 Msa0118660:intron 40.0%
AGTTCATCTGTTCGTGCAAA+TGG + chr1_3:41716526-41716545 None:intergenic 40.0%
ACCAGATAGAGCAACTACAT+CGG + chr1_3:41716585-41716604 None:intergenic 40.0%
! TGAAATTTGGTTCGATTGGC+GGG + chr1_3:41716667-41716686 None:intergenic 40.0%
! ATCCAAATTAACGGCGTTGA+GGG + chr1_3:41716726-41716745 None:intergenic 40.0%
CATTAACCTCTTGAATCACC+AGG - chr1_3:41716781-41716800 Msa0118660:intron 40.0%
TCACCAGGGTATGTTTACAT+CGG - chr1_3:41716796-41716815 Msa0118660:intron 40.0%
GTTTACATCGGATCAAGACT+TGG - chr1_3:41716808-41716827 Msa0118660:CDS 40.0%
!! CTTTCTGGTTAGAAGCAAAG+TGG + chr1_3:41716865-41716884 None:intergenic 40.0%
! GAAATCTAAGGTGACATCTG+TGG - chr1_3:41716991-41717010 Msa0118660:CDS 40.0%
CTACTCTCTCAGAGGAAACA+AGG + chr1_3:41713835-41713854 None:intergenic 45.0%
AGGTGATCCACCGTTATATC+AGG - chr1_3:41714096-41714115 Msa0118660:CDS 45.0%
! GAATGGTGTTAACGGAGAAG+AGG - chr1_3:41714799-41714818 Msa0118660:intron 45.0%
TGATGCCAACTTCGCTTTGA+AGG - chr1_3:41714835-41714854 Msa0118660:intron 45.0%
! GCTTACGGATTATAGCACGA+AGG + chr1_3:41714886-41714905 None:intergenic 45.0%
CAACTCGTGGACATTGCTTA+CGG + chr1_3:41714901-41714920 None:intergenic 45.0%
GACAAGGGAGTTAACAAACC+AGG + chr1_3:41715282-41715301 None:intergenic 45.0%
TTTAACGCTGTTGCATGCCA+AGG + chr1_3:41715469-41715488 None:intergenic 45.0%
! ACTAATCCCTCGAGCATTGT+GGG + chr1_3:41715524-41715543 None:intergenic 45.0%
!! TTTGATGGTGTGGTCCTCAT+GGG + chr1_3:41715909-41715928 None:intergenic 45.0%
!!! TTTTGATGGTGTGGTCCTCA+TGG + chr1_3:41715910-41715929 None:intergenic 45.0%
!! GGTGGTGACGAGTATTTTGA+TGG + chr1_3:41715924-41715943 None:intergenic 45.0%
!! GTGAAGGAGTCTGTTTTAGG+TGG + chr1_3:41715942-41715961 None:intergenic 45.0%
TTACAGTGGTGGTTTCGTGA+AGG + chr1_3:41715958-41715977 None:intergenic 45.0%
!! TCAACTTTGGTGTTCAGGAC+GGG + chr1_3:41716048-41716067 None:intergenic 45.0%
!! CTCAACTTTGGTGTTCAGGA+CGG + chr1_3:41716049-41716068 None:intergenic 45.0%
! GGTTAGGAGCTTTTCGATTG+TGG + chr1_3:41716072-41716091 None:intergenic 45.0%
AAGATCGGGAGTCAGTTCTT+TGG + chr1_3:41716177-41716196 None:intergenic 45.0%
! TTGGTGTTTCTCTGGTGTAC+CGG + chr1_3:41716260-41716279 None:intergenic 45.0%
TTTGCTTCAAGATCGGGAGT+CGG + chr1_3:41716312-41716331 None:intergenic 45.0%
!! TTTGTGTGCTGATTTCCGGT+GGG + chr1_3:41716344-41716363 None:intergenic 45.0%
!!! TTTTGTGTGCTGATTTCCGG+TGG + chr1_3:41716345-41716364 None:intergenic 45.0%
CCAATGGCACGTCAAAATCT+GGG + chr1_3:41716450-41716469 None:intergenic 45.0%
!! CCAGATTTTGACGTGCCATT+GGG - chr1_3:41716448-41716467 Msa0118660:intron 45.0%
! AGGCTGTCTTTTCTTCCCAA+TGG + chr1_3:41716466-41716485 None:intergenic 45.0%
CTGTTCGTGCAAATGGTACT+GGG + chr1_3:41716519-41716538 None:intergenic 45.0%
TCTGTTCGTGCAAATGGTAC+TGG + chr1_3:41716520-41716539 None:intergenic 45.0%
ACCGATGTAGTTGCTCTATC+TGG - chr1_3:41716581-41716600 Msa0118660:intron 45.0%
! CTATCTGGTGCTCACACTTT+TGG - chr1_3:41716596-41716615 Msa0118660:intron 45.0%
ATCCCTCAACGCCGTTAATT+TGG - chr1_3:41716721-41716740 Msa0118660:intron 45.0%
GATCCAAATTAACGGCGTTG+AGG + chr1_3:41716727-41716746 None:intergenic 45.0%
ACATACCCTGGTGATTCAAG+AGG + chr1_3:41716790-41716809 None:intergenic 45.0%
GATCCGATGTAAACATACCC+TGG + chr1_3:41716802-41716821 None:intergenic 45.0%
GGCAAGTCATCCTAAGACTA+AGG - chr1_3:41716829-41716848 Msa0118660:CDS 45.0%
! ATCTAAGGTGACATCTGTGG+TGG - chr1_3:41716994-41717013 Msa0118660:CDS 45.0%
!! AGGACTTGCTACTCTCTCAG+AGG + chr1_3:41713843-41713862 None:intergenic 50.0%
! AAGGATAGTGGTCAAGCTCC+TGG - chr1_3:41713956-41713975 Msa0118660:CDS 50.0%
!! TGCCAACTTCGCTTTGAAGG+AGG - chr1_3:41714838-41714857 Msa0118660:intron 50.0%
CTCCTCCTTCAAAGCGAAGT+TGG + chr1_3:41714843-41714862 None:intergenic 50.0%
!! CAACTTCGCTTTGAAGGAGG+AGG - chr1_3:41714841-41714860 Msa0118660:intron 50.0%
! CGAGCATTGTGGGACCTAAA+TGG + chr1_3:41715514-41715533 None:intergenic 50.0%
TTTAGGTCCCACAATGCTCG+AGG - chr1_3:41715514-41715533 Msa0118660:intron 50.0%
TTAGGTCCCACAATGCTCGA+GGG - chr1_3:41715515-41715534 Msa0118660:intron 50.0%
! GACTAATCCCTCGAGCATTG+TGG + chr1_3:41715525-41715544 None:intergenic 50.0%
GATCGTCTTGAGCAGGGATT+AGG + chr1_3:41715809-41715828 None:intergenic 50.0%
GTCTCTGATCGTCTTGAGCA+GGG + chr1_3:41715815-41715834 None:intergenic 50.0%
TGCTCAAGACGATCAGAGAC+CGG - chr1_3:41715815-41715834 Msa0118660:intron 50.0%
!! CAAAAGGCGCCGTATATAGG+CGG - chr1_3:41715854-41715873 Msa0118660:CDS 50.0%
TCGGGTGTTCCGCCTATATA+CGG + chr1_3:41715866-41715885 None:intergenic 50.0%
ACACCCTAAAAACGCCCATG+AGG - chr1_3:41715892-41715911 Msa0118660:CDS 50.0%
! GGTCCTCATGGGCGTTTTTA+GGG + chr1_3:41715898-41715917 None:intergenic 50.0%
! TGGTCCTCATGGGCGTTTTT+AGG + chr1_3:41715899-41715918 None:intergenic 50.0%
GAGTAGTGACGATGGATGGT+TGG + chr1_3:41715990-41716009 None:intergenic 50.0%
!! GTGGCTCAACTTTGGTGTTC+AGG + chr1_3:41716053-41716072 None:intergenic 50.0%
!! GAGAGGTGGTGGAAGTTGAA+TGG + chr1_3:41716101-41716120 None:intergenic 50.0%
!! GGCGTGATTTGGTGTTTCTC+TGG + chr1_3:41716268-41716287 None:intergenic 50.0%
AGCAAAATTAACCGGCCCAC+CGG - chr1_3:41716326-41716345 Msa0118660:intron 50.0%
!! CCCAGATTTTGACGTGCCAT+TGG - chr1_3:41716447-41716466 Msa0118660:intron 50.0%
CCCAATGGCACGTCAAAATC+TGG + chr1_3:41716451-41716470 None:intergenic 50.0%
GCGGGTCGGAATCAATGATT+CGG + chr1_3:41716649-41716668 None:intergenic 50.0%
! ATTTGGTTCGATTGGCGGGT+CGG + chr1_3:41716663-41716682 None:intergenic 50.0%
CGAAGCTACATGTCCGAATG+AGG - chr1_3:41716697-41716716 Msa0118660:intron 50.0%
GCGTTGAGGGATTCCTCATT+CGG + chr1_3:41716713-41716732 None:intergenic 50.0%
TAGCAAGTCCTCCTGCTGTG+AGG - chr1_3:41713852-41713871 Msa0118660:CDS 55.0%
AGCAAGTCCTCCTGCTGTGA+GGG - chr1_3:41713853-41713872 Msa0118660:CDS 55.0%
TAGTCTAGTCCCCTCACAGC+AGG + chr1_3:41713866-41713885 None:intergenic 55.0%
CCAAGGCTGGATTCGAACTC+AGG + chr1_3:41715452-41715471 None:intergenic 55.0%
CCTGAGTTCGAATCCAGCCT+TGG - chr1_3:41715449-41715468 Msa0118660:intron 55.0%
TTAGTCTCTGCAGTTGCGCG+TGG - chr1_3:41715539-41715558 Msa0118660:intron 55.0%
GGTCTCTGATCGTCTTGAGC+AGG + chr1_3:41715816-41715835 None:intergenic 55.0%
GGGTGAGTAGTGACGATGGA+TGG + chr1_3:41715994-41716013 None:intergenic 55.0%
TTGGGGGTGAGTAGTGACGA+TGG + chr1_3:41715998-41716017 None:intergenic 55.0%
!! ACTTTGGTGTTCAGGACGGG+AGG + chr1_3:41716045-41716064 None:intergenic 55.0%
GGTTTCTTTCGGTGGATCGG+AGG + chr1_3:41716126-41716145 None:intergenic 55.0%
!! TGAGGGGTGCCCTTCTGATT+TGG + chr1_3:41716234-41716253 None:intergenic 55.0%
TCTGGTGTACCGGAAGTGAG+GGG + chr1_3:41716250-41716269 None:intergenic 55.0%
CTCTGGTGTACCGGAAGTGA+GGG + chr1_3:41716251-41716270 None:intergenic 55.0%
TCTCTGGTGTACCGGAAGTG+AGG + chr1_3:41716252-41716271 None:intergenic 55.0%
! GGTGACATCTGTGGTGGAAG+AGG - chr1_3:41717000-41717019 Msa0118660:CDS 55.0%
! GACATCTGTGGTGGAAGAGG+TGG - chr1_3:41717003-41717022 Msa0118660:CDS 55.0%
! ATCTGTGGTGGAAGAGGTGG+TGG - chr1_3:41717006-41717025 Msa0118660:CDS 55.0%
GCAAGTCCTCCTGCTGTGAG+GGG - chr1_3:41713854-41713873 Msa0118660:CDS 60.0%
TCTAGTCCCCTCACAGCAGG+AGG + chr1_3:41713863-41713882 None:intergenic 60.0%
TCTGCGCACGAGACAACTCG+TGG + chr1_3:41714914-41714933 None:intergenic 60.0%
TTGGCGAACAGCTTCGCGTG+CGG + chr1_3:41714951-41714970 None:intergenic 60.0%
ACGCTGTTGCATGCCAAGGC+TGG + chr1_3:41715465-41715484 None:intergenic 60.0%
CAGTTGCGCGTGGAGGATAC+CGG - chr1_3:41715549-41715568 Msa0118660:intron 60.0%
!! AGAAGGGCACCCCTCACTTC+CGG - chr1_3:41716238-41716257 Msa0118660:intron 60.0%
!! TGTGCTGATTTCCGGTGGGC+CGG + chr1_3:41716340-41716359 None:intergenic 60.0%
CTTCGCGTGCGGCGATGACA+AGG + chr1_3:41714940-41714959 None:intergenic 65.0%
GTCTCTGCAGTTGCGCGTGG+AGG - chr1_3:41715542-41715561 Msa0118660:intron 65.0%
GATCGGAGGTCGAGAGGTGG+TGG + chr1_3:41716112-41716131 None:intergenic 65.0%
GTGGATCGGAGGTCGAGAGG+TGG + chr1_3:41716115-41716134 None:intergenic 65.0%
TCGGTGGATCGGAGGTCGAG+AGG + chr1_3:41716118-41716137 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 41713764 41717048 41713764 ID=Msa0118660;Name=Msa0118660
chr1_3 mRNA 41713764 41717048 41713764 ID=Msa0118660-mRNA-1;Parent=Msa0118660;Name=Msa0118660-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|4|0|292
chr1_3 exon 41716797 41717048 41716797 ID=Msa0118660-mRNA-1:exon:12654;Parent=Msa0118660-mRNA-1
chr1_3 exon 41715842 41715955 41715842 ID=Msa0118660-mRNA-1:exon:12653;Parent=Msa0118660-mRNA-1
chr1_3 exon 41714319 41714373 41714319 ID=Msa0118660-mRNA-1:exon:12652;Parent=Msa0118660-mRNA-1
chr1_3 exon 41713764 41714221 41713764 ID=Msa0118660-mRNA-1:exon:12651;Parent=Msa0118660-mRNA-1
chr1_3 CDS 41716797 41717048 41716797 ID=Msa0118660-mRNA-1:cds;Parent=Msa0118660-mRNA-1
chr1_3 CDS 41715842 41715955 41715842 ID=Msa0118660-mRNA-1:cds;Parent=Msa0118660-mRNA-1
chr1_3 CDS 41714319 41714373 41714319 ID=Msa0118660-mRNA-1:cds;Parent=Msa0118660-mRNA-1
chr1_3 CDS 41713764 41714221 41713764 ID=Msa0118660-mRNA-1:cds;Parent=Msa0118660-mRNA-1
Gene Sequence

>Msa0118660

ATGGCTATGGTTAGTGCAAGTAGATCACATTCATTGTTTTTTATTTTATTTCTATTAGCTTCTCTAATCCTTGTTTCCTCTGAGAGAGTAGCAAGTCCTCCTGCTGTGAGGGGACTAGACTATGATTTCTATTGGTTGTCATGTCCAAGGATTGAAAGGATTGTAAGGAAACATCTTGAAGATGTTTTTGAAAAGGATAGTGGTCAAGCTCCTGGCATACTCAGACTCTTTTTCCATGATTGCTTTTCCCAGGAGGAGGCTCTTCAGACCATTGAGAACCTTCGTGCTATAATCCGTAAGCAATGTCCACGAGTTGTCTCGTGCGCAGATATCCTTGTCATCGCCGCACGCGAAGCTGTTCGCCAATTTGGAGGCCCAGATTTTGACGTGCCATTGGGAAGAAAAGACAGCCTAAACTTCATTGCTCTATCTGGTGCTCACACTTTTGGTCAAGCTCATTGTCCTACAATGTTCAACCGAATCATTGATTCCGACCCGCCAATCGAACCAAATTTCAAGAAACAACTCGAAGCTACATGTCCGAATGAGGAATCCCTCAACGCCGTTAATTTGGATCTTCGAACACCAAACACATTCGATAATATGTACTACATTAACCTCTTGAATCACCAGGGTATGTTTACATCGGATCAAGACTTGGCAAGTCATCCTAAGACTAAGGAGATTGTGAACCACTTTGCTTCTAACCAGAAAGAGTTTTTTAACAAATTTGCTAATGCTTTTGTTAAGGTTAGTCAATTGGATGTTTTGACTGGAAATCAAGGAGAAATTCGTAAGTCATGTTTTGCTCCAAATAATAGGAAATCTAAGGTGACATCTGTGGTGGAAGAGGTGGTGGAAATTGCAGCAAACATGTAG
Protein sequence

>Msa0118660

MAMVSASRSHSLFFILFLLASLILVSSERVASPPAVRGLDYDFYWLSCPRIERIVRKHLEDVFEKDSGQAPGILRLFFHDCFSQEEALQTIENLRAIIRKQCPRVVSCADILVIAAREAVRQFGGPDFDVPLGRKDSLNFIALSGAHTFGQAHCPTMFNRIIDSDPPIEPNFKKQLEATCPNEESLNAVNLDLRTPNTFDNMYYINLLNHQGMFTSDQDLASHPKTKEIVNHFASNQKEFFNKFANAFVKVSQLDVLTGNQGEIRKSCFAPNNRKSKVTSVVEEVVEIAANM*