Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396130 | XP_003591745.2 | 98.157 | 597 | 11 | 0 | 1 | 597 | 1 | 597 | 0.0 | 1214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396130 | sp|P0DO24|PSI3_ARATH | 34.028 | 144 | 82 | 3 | 435 | 569 | 372 | 511 | 1.02e-14 | 80.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396130 | G7I338 | 98.157 | 597 | 11 | 0 | 1 | 597 | 1 | 597 | 0.0 | 1214 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0064110 | Msa1396130 | 0.819769 | 9.758614e-53 | -8.615850e-47 |
| Msa0603370 | Msa1396130 | 0.810231 | 1.277298e-50 | -8.615850e-47 |
| Msa0653440 | Msa1396130 | 0.801628 | 8.231723e-49 | -8.615850e-47 |
| Msa0695870 | Msa1396130 | 0.818051 | 2.398082e-52 | -8.615850e-47 |
| Msa0797250 | Msa1396130 | 0.823605 | 1.265615e-53 | -8.615850e-47 |
| Msa0810270 | Msa1396130 | 0.815779 | 7.761832e-52 | -8.615850e-47 |
| Msa0240270 | Msa1396130 | 0.803858 | 2.852062e-49 | -8.615850e-47 |
| Msa1143020 | Msa1396130 | 0.800537 | 1.375609e-48 | -8.615850e-47 |
| Msa0919530 | Msa1396130 | 0.808063 | 3.723673e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396130 | MtrunA17_Chr1g0198031 | 98.157 | 597 | 11 | 0 | 1 | 597 | 1 | 597 | 0.0 | 1214 |
| Msa1396130 | MtrunA17_Chr3g0126591 | 65.174 | 603 | 191 | 6 | 1 | 596 | 1 | 591 | 0.0 | 749 |
| Msa1396130 | MtrunA17_Chr1g0179471 | 39.523 | 587 | 259 | 16 | 5 | 571 | 9 | 519 | 2.31e-106 | 330 |
| Msa1396130 | MtrunA17_Chr7g0265631 | 38.316 | 582 | 292 | 11 | 1 | 569 | 5 | 532 | 2.58e-102 | 321 |
| Msa1396130 | MtrunA17_Chr1g0188181 | 49.558 | 226 | 104 | 6 | 370 | 592 | 379 | 597 | 4.29e-61 | 213 |
| Msa1396130 | MtrunA17_Chr1g0188181 | 36.727 | 275 | 147 | 5 | 12 | 259 | 142 | 416 | 2.46e-45 | 169 |
| Msa1396130 | MtrunA17_Chr1g0168081 | 58.333 | 168 | 64 | 3 | 414 | 578 | 419 | 583 | 1.94e-55 | 197 |
| Msa1396130 | MtrunA17_Chr1g0168081 | 33.333 | 246 | 145 | 2 | 1 | 229 | 1 | 244 | 3.36e-40 | 155 |
| Msa1396130 | MtrunA17_Chr1g0186481 | 46.047 | 215 | 105 | 3 | 373 | 578 | 341 | 553 | 1.53e-54 | 194 |
| Msa1396130 | MtrunA17_Chr1g0186481 | 36.916 | 214 | 134 | 1 | 16 | 229 | 36 | 248 | 3.68e-39 | 151 |
| Msa1396130 | MtrunA17_Chr6g0475791 | 58.025 | 162 | 65 | 3 | 422 | 581 | 306 | 466 | 6.47e-52 | 185 |
| Msa1396130 | MtrunA17_Chr6g0475791 | 38.745 | 271 | 149 | 4 | 19 | 287 | 29 | 284 | 9.07e-49 | 177 |
| Msa1396130 | MtrunA17_Chr4g0009451 | 33.065 | 248 | 132 | 9 | 341 | 570 | 242 | 473 | 6.40e-31 | 126 |
| Msa1396130 | MtrunA17_Chr4g0009451 | 30.493 | 223 | 147 | 1 | 15 | 229 | 8 | 230 | 1.67e-30 | 125 |
| Msa1396130 | MtrunA17_Chr7g0239391 | 29.187 | 209 | 143 | 1 | 26 | 229 | 25 | 233 | 3.00e-26 | 112 |
| Msa1396130 | MtrunA17_Chr7g0239391 | 36.538 | 156 | 90 | 2 | 423 | 570 | 325 | 479 | 6.81e-24 | 105 |
| Msa1396130 | MtrunA17_Chr1g0200831 | 31.707 | 164 | 98 | 2 | 427 | 580 | 374 | 533 | 1.48e-17 | 86.7 |
| Msa1396130 | MtrunA17_Chr1g0200831 | 26.047 | 215 | 139 | 4 | 26 | 229 | 162 | 367 | 4.66e-15 | 78.6 |
| Msa1396130 | MtrunA17_Chr3g0142751 | 32.237 | 152 | 89 | 3 | 433 | 574 | 341 | 488 | 4.19e-14 | 75.5 |
| Msa1396130 | MtrunA17_Chr3g0142751 | 25.359 | 209 | 148 | 3 | 26 | 229 | 122 | 327 | 8.68e-12 | 68.2 |
| Msa1396130 | MtrunA17_Chr1g0156671 | 31.373 | 153 | 90 | 3 | 433 | 574 | 346 | 494 | 7.22e-14 | 74.7 |
| Msa1396130 | MtrunA17_Chr1g0156671 | 25.389 | 193 | 136 | 3 | 23 | 210 | 124 | 313 | 2.92e-12 | 69.7 |
| Msa1396130 | MtrunA17_Chr3g0130981 | 22.549 | 204 | 155 | 2 | 26 | 229 | 141 | 341 | 4.82e-12 | 68.9 |
| Msa1396130 | MtrunA17_Chr3g0130981 | 30.147 | 136 | 82 | 3 | 433 | 559 | 357 | 488 | 2.14e-11 | 67.0 |
| Msa1396130 | MtrunA17_Chr8g0385111 | 31.618 | 136 | 80 | 4 | 433 | 559 | 371 | 502 | 5.50e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396130 | AT5G04550.1 | 52.843 | 598 | 251 | 11 | 1 | 582 | 1 | 583 | 0.0 | 553 |
| Msa1396130 | AT5G04550.2 | 52.843 | 598 | 251 | 11 | 1 | 582 | 1 | 583 | 0.0 | 553 |
| Msa1396130 | AT5G51670.1 | 58.228 | 158 | 60 | 2 | 428 | 581 | 308 | 463 | 2.02e-53 | 189 |
| Msa1396130 | AT5G51670.1 | 36.279 | 215 | 125 | 1 | 26 | 228 | 37 | 251 | 1.55e-40 | 154 |
| Msa1396130 | AT5G51670.2 | 58.228 | 158 | 60 | 2 | 428 | 581 | 308 | 463 | 2.02e-53 | 189 |
| Msa1396130 | AT5G51670.2 | 36.279 | 215 | 125 | 1 | 26 | 228 | 37 | 251 | 1.55e-40 | 154 |
| Msa1396130 | AT3G23160.1 | 51.479 | 169 | 80 | 2 | 419 | 586 | 345 | 512 | 4.36e-50 | 182 |
| Msa1396130 | AT3G23160.1 | 38.647 | 207 | 126 | 1 | 23 | 229 | 40 | 245 | 5.05e-42 | 159 |
| Msa1396130 | AT5G08660.3 | 34.028 | 144 | 82 | 3 | 435 | 569 | 372 | 511 | 1.04e-15 | 80.9 |
| Msa1396130 | AT5G08660.1 | 34.028 | 144 | 82 | 3 | 435 | 569 | 372 | 511 | 1.04e-15 | 80.9 |
| Msa1396130 | AT5G08660.4 | 34.028 | 144 | 82 | 3 | 435 | 569 | 372 | 511 | 1.04e-15 | 80.9 |
| Msa1396130 | AT1G34320.1 | 32.484 | 157 | 89 | 4 | 430 | 574 | 373 | 524 | 2.43e-15 | 79.7 |
| Msa1396130 | AT1G34320.1 | 24.528 | 212 | 148 | 3 | 26 | 229 | 155 | 362 | 1.93e-14 | 77.0 |
| Msa1396130 | AT1G34320.2 | 32.484 | 157 | 89 | 4 | 430 | 574 | 373 | 524 | 2.43e-15 | 79.7 |
| Msa1396130 | AT1G34320.2 | 24.528 | 212 | 148 | 3 | 26 | 229 | 155 | 362 | 1.93e-14 | 77.0 |
| Msa1396130 | AT1G30755.5 | 29.814 | 161 | 96 | 3 | 433 | 580 | 353 | 509 | 1.22e-12 | 71.2 |
| Msa1396130 | AT1G30755.1 | 29.814 | 161 | 96 | 3 | 433 | 580 | 353 | 509 | 1.22e-12 | 71.2 |
| Msa1396130 | AT1G30755.6 | 29.814 | 161 | 96 | 3 | 433 | 580 | 353 | 509 | 1.22e-12 | 71.2 |
| Msa1396130 | AT5G08660.2 | 39.535 | 86 | 48 | 1 | 435 | 520 | 372 | 453 | 7.04e-11 | 65.1 |
Find 114 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATCTGGTAACATTATTT+TGG | 0.078697 | tig0022001:-55386 | None:intergenic |
| ACAAAGTCAGGCCCGATTTC+GGG | 0.198399 | tig0022001:+55501 | Msa1396130:CDS |
| GACAAAGTCAGGCCCGATTT+CGG | 0.282357 | tig0022001:+55500 | Msa1396130:CDS |
| TTCTCAAAATTCTTCAGTCT+TGG | 0.290054 | tig0022001:-54898 | None:intergenic |
| TCAAGAGATGCTTGAGAGTA+TGG | 0.298295 | tig0022001:+54828 | Msa1396130:CDS |
| GTTTCCAAGGGAATATCATT+AGG | 0.322766 | tig0022001:-55756 | None:intergenic |
| CCTCTATACTTTCCCGAAAT+CGG | 0.325444 | tig0022001:-55513 | None:intergenic |
| TGATCTGATTTAGCAGTAGA+AGG | 0.343691 | tig0022001:-55426 | None:intergenic |
| AATCATGGTTTCGAAATCTA+TGG | 0.347401 | tig0022001:+54596 | Msa1396130:CDS |
| GTACAATGAGTTACATTTCC+AGG | 0.358503 | tig0022001:-55816 | None:intergenic |
| TCTCAAAATTCTTCAGTCTT+GGG | 0.381346 | tig0022001:-54897 | None:intergenic |
| GGCAATAGTGTAGTAGATAA+TGG | 0.382722 | tig0022001:+56335 | Msa1396130:CDS |
| GCGAGACGAGATTTCAAATT+CGG | 0.388087 | tig0022001:+54750 | Msa1396130:CDS |
| AATGTTACCAGATTTGCTTC+AGG | 0.389947 | tig0022001:+55393 | Msa1396130:CDS |
| CTCAGAGTTATTGCAATCTT+CGG | 0.395849 | tig0022001:+55353 | Msa1396130:CDS |
| TTCTGATACTCGATCAAATT+CGG | 0.401763 | tig0022001:-55114 | None:intergenic |
| AAGGGGTCCTGAAGCAAATC+TGG | 0.403486 | tig0022001:-55400 | None:intergenic |
| ACAGCCGCAGCCATGGAATA+TGG | 0.403752 | tig0022001:-56044 | None:intergenic |
| TTCTTGATTTGCAAAGTAAA+GGG | 0.404917 | tig0022001:-56222 | None:intergenic |
| CGGTGAGCATTTCCATCTCT+TGG | 0.405234 | tig0022001:-55041 | None:intergenic |
| TTTCTTGATTTGCAAAGTAA+AGG | 0.406785 | tig0022001:-56223 | None:intergenic |
| CCTGTCCCGGATAATGTAAC+AGG | 0.409704 | tig0022001:+55579 | Msa1396130:CDS |
| TTTCCAAGGGAATATCATTA+GGG | 0.411335 | tig0022001:-55755 | None:intergenic |
| CAATAACATTTGCGTAGTGC+AGG | 0.416258 | tig0022001:-55908 | None:intergenic |
| AGTCTAATTCTGTGTGGAAC+AGG | 0.422000 | tig0022001:+55175 | Msa1396130:CDS |
| TTCGCGGACAAACGTGTTGT+TGG | 0.427978 | tig0022001:+56193 | Msa1396130:CDS |
| CTCTATACTTTCCCGAAATC+GGG | 0.428900 | tig0022001:-55512 | None:intergenic |
| AATTCTGAGAAAGCAGTGAT+TGG | 0.430163 | tig0022001:+54643 | Msa1396130:CDS |
| CCTCGAATGTGATCAGAATT+CGG | 0.438870 | tig0022001:-55318 | None:intergenic |
| GGCGACTCTTCGACAAAGTC+AGG | 0.453691 | tig0022001:+55489 | Msa1396130:CDS |
| GCAGTCTTTGAGTGATAAAC+AGG | 0.455192 | tig0022001:+54717 | Msa1396130:CDS |
| CGCAAGCCTAGCCACAGATT+CGG | 0.460018 | tig0022001:-54860 | None:intergenic |
| AATACAGGTATCTTAGAGAT+TGG | 0.462810 | tig0022001:+56314 | Msa1396130:CDS |
| TCAGCCTCTCCACACTTGAT+TGG | 0.470012 | tig0022001:+55948 | Msa1396130:CDS |
| GCAGGTTGCGTGGAAGAAGC+TGG | 0.472548 | tig0022001:+55137 | Msa1396130:CDS |
| CCTGTTACATTATCCGGGAC+AGG | 0.480680 | tig0022001:-55579 | None:intergenic |
| AGATTTGCTTCAGGACCCCT+TGG | 0.481762 | tig0022001:+55402 | Msa1396130:CDS |
| TGAAATCTCGTCTCGCAACT+TGG | 0.482654 | tig0022001:-54743 | None:intergenic |
| AGCAGCTGAGCTTTGTTTCG+CGG | 0.483326 | tig0022001:+56177 | Msa1396130:CDS |
| GATTTAGACCTTCATACTCC+TGG | 0.485555 | tig0022001:+55798 | Msa1396130:CDS |
| TGATCACATTCGAGGCAGTC+AGG | 0.486031 | tig0022001:+55326 | Msa1396130:CDS |
| TATGTGAAGGAGCTCAATAC+AGG | 0.487172 | tig0022001:+56299 | Msa1396130:CDS |
| CCGAATTCTGATCACATTCG+AGG | 0.498428 | tig0022001:+55318 | Msa1396130:CDS |
| ATTGAAGAGGTAATAAATGT+TGG | 0.500472 | tig0022001:+55273 | Msa1396130:CDS |
| CTGCCACACATTGACAAGCT+TGG | 0.505389 | tig0022001:-54698 | None:intergenic |
| ATTCGGAACACTACGATTCG+TGG | 0.508822 | tig0022001:-55301 | None:intergenic |
| GGCGTGTAAGAGCTTCTCTC+AGG | 0.517048 | tig0022001:+56009 | Msa1396130:CDS |
| CCGATTTCGGGAAAGTATAG+AGG | 0.522748 | tig0022001:+55513 | Msa1396130:CDS |
| ACTAGCATTCTTCACTCGGT+TGG | 0.524138 | tig0022001:+55468 | Msa1396130:CDS |
| GGCTAAAGAAGCGGCACCAA+GGG | 0.526032 | tig0022001:-55886 | None:intergenic |
| GCTAACTCTGAAGAGAATGA+AGG | 0.528483 | tig0022001:+55071 | Msa1396130:CDS |
| ATAATCACCGAGCTTCTTGT+CGG | 0.528578 | tig0022001:+56257 | Msa1396130:CDS |
| ACTTGATTGGTCTCGATGCA+AGG | 0.529764 | tig0022001:+55961 | Msa1396130:CDS |
| CTTAACATGTTGTGAGCAAG+TGG | 0.530855 | tig0022001:-56131 | None:intergenic |
| TGCAAGCTTGTACCAAGAGA+TGG | 0.531229 | tig0022001:+55029 | Msa1396130:CDS |
| TTTGATCGAGTATCAGAAGC+AGG | 0.532025 | tig0022001:+55119 | Msa1396130:CDS |
| TTACATTTCCAGGAGTATGA+AGG | 0.535650 | tig0022001:-55806 | None:intergenic |
| ACGCAAGTCTAGCAGAAGAA+TGG | 0.537556 | tig0022001:+56072 | Msa1396130:CDS |
| AAACCCTAATGATATTCCCT+TGG | 0.537691 | tig0022001:+55752 | Msa1396130:CDS |
| TTTGATATGTTTATTACCCG+TGG | 0.545425 | tig0022001:+54925 | Msa1396130:CDS |
| CTTTATTTACAATACTCAGT+AGG | 0.546289 | tig0022001:+55232 | Msa1396130:CDS |
| TAAAACTAGCATTCTTCACT+CGG | 0.549237 | tig0022001:+55464 | Msa1396130:CDS |
| TTGCTCACAACATGTTAAGA+TGG | 0.550366 | tig0022001:+56135 | Msa1396130:CDS |
| AAGCCTCCATCTGAATCCCT+TGG | 0.555340 | tig0022001:+55870 | Msa1396130:CDS |
| TTTGTGATTCTGAGTTTCCA+AGG | 0.559767 | tig0022001:-55769 | None:intergenic |
| CTTCAGAGTTAGCTCAAGAT+CGG | 0.562513 | tig0022001:-55061 | None:intergenic |
| AGGTTTACAGTGAGTCGGAC+GGG | 0.562547 | tig0022001:+55091 | Msa1396130:CDS |
| TCCCACTCGTGGTTGTTGAG+TGG | 0.562845 | tig0022001:-55635 | None:intergenic |
| AAGCGATGGTAGCTGAATCA+TGG | 0.567030 | tig0022001:+54581 | None:intergenic |
| CTTGATTGGTCTCGATGCAA+GGG | 0.571162 | tig0022001:+55962 | Msa1396130:CDS |
| TTGTGATTCTGAGTTTCCAA+GGG | 0.576032 | tig0022001:-55768 | None:intergenic |
| TAAGAGCTTCTCTCAGGACC+AGG | 0.577584 | tig0022001:+56015 | Msa1396130:CDS |
| CCCATACGAATCAAAACCAC+GGG | 0.579429 | tig0022001:-54941 | None:intergenic |
| ATGTGGCCGAATCTGTGGCT+AGG | 0.583300 | tig0022001:+54854 | Msa1396130:CDS |
| CAGGCTTAAGCCATATTCCA+TGG | 0.584717 | tig0022001:+56034 | Msa1396130:CDS |
| CATAGTCGAGCAACTCAAGT+AGG | 0.589346 | tig0022001:+55675 | Msa1396130:CDS |
| ACGGGTAATAAACATATCAA+AGG | 0.591465 | tig0022001:-54923 | None:intergenic |
| TTGTCGGTCTGAATTATGTG+TGG | 0.595673 | tig0022001:+56273 | Msa1396130:CDS |
| ATCTATACAACATGCTGCCG+AGG | 0.599453 | tig0022001:+55988 | Msa1396130:CDS |
| CATGGAATATGGCTTAAGCC+TGG | 0.599747 | tig0022001:-56033 | None:intergenic |
| GACGAGATTTCAAATTCGGT+CGG | 0.601247 | tig0022001:+54754 | Msa1396130:CDS |
| GGCACATGTGGCCGAATCTG+TGG | 0.603173 | tig0022001:+54849 | Msa1396130:CDS |
| TCTATGGAAGACTCAACGTA+AGG | 0.603403 | tig0022001:+54612 | Msa1396130:CDS |
| TTGCAAAGAGAACTGAATGT+CGG | 0.605976 | tig0022001:-55843 | None:intergenic |
| GCGGCAATACAGCCTTTGAA+AGG | 0.610443 | tig0022001:-55699 | None:intergenic |
| ATTCAGACCGACAAGAAGCT+CGG | 0.611368 | tig0022001:-56264 | None:intergenic |
| GCGGCACCAAGGGATTCAGA+TGG | 0.613289 | tig0022001:-55876 | None:intergenic |
| AATAACATTTGCGTAGTGCA+GGG | 0.614388 | tig0022001:-55907 | None:intergenic |
| GGCCACTCAACAACCACGAG+TGG | 0.614960 | tig0022001:+55633 | Msa1396130:CDS |
| CTCAACAACCACGAGTGGGA+AGG | 0.617609 | tig0022001:+55638 | Msa1396130:CDS |
| TAAGCCATATTCCATGGCTG+CGG | 0.620281 | tig0022001:+56040 | Msa1396130:CDS |
| GCACCAAGGGATTCAGATGG+AGG | 0.620978 | tig0022001:-55873 | None:intergenic |
| AGTATCAGAAGCAGGTTGCG+TGG | 0.624252 | tig0022001:+55127 | Msa1396130:CDS |
| AAGGTTTACAGTGAGTCGGA+CGG | 0.625325 | tig0022001:+55090 | Msa1396130:CDS |
| ACCCATACGAATCAAAACCA+CGG | 0.629560 | tig0022001:-54942 | None:intergenic |
| AATGAAGGTTTACAGTGAGT+CGG | 0.629961 | tig0022001:+55086 | Msa1396130:CDS |
| AGAGAAGCTCTTACACGCCT+CGG | 0.633061 | tig0022001:-56005 | None:intergenic |
| GGGCTAAAGAAGCGGCACCA+AGG | 0.642399 | tig0022001:-55887 | None:intergenic |
| TTTAGCAGTAGAAGGACCAA+GGG | 0.646430 | tig0022001:-55418 | None:intergenic |
| ATTTAGCAGTAGAAGGACCA+AGG | 0.648101 | tig0022001:-55419 | None:intergenic |
| GCCACTCAACAACCACGAGT+GGG | 0.651051 | tig0022001:+55634 | Msa1396130:CDS |
| GTAGTGCAGGGCTAAAGAAG+CGG | 0.653446 | tig0022001:-55895 | None:intergenic |
| GCTTGAGAGTATGGCACATG+TGG | 0.659391 | tig0022001:+54837 | Msa1396130:CDS |
| ACTCAAGTAGGACCTTTCAA+AGG | 0.660547 | tig0022001:+55687 | Msa1396130:CDS |
| GATGACTGAGGAACTATCTG+CGG | 0.666924 | tig0022001:-55718 | None:intergenic |
| GCATCGAGACCAATCAAGTG+TGG | 0.668078 | tig0022001:-55957 | None:intergenic |
| GAGACCAATCAAGTGTGGAG+AGG | 0.678449 | tig0022001:-55952 | None:intergenic |
| TGTCCAAGCTTGTCAATGTG+TGG | 0.689258 | tig0022001:+54695 | Msa1396130:CDS |
| ACTTACAGTCTAATTCTGTG+TGG | 0.698133 | tig0022001:+55169 | Msa1396130:CDS |
| TTATGTGTGGAGATATGTGA+AGG | 0.710243 | tig0022001:+56286 | Msa1396130:CDS |
| TCACATTCGAGGCAGTCAGG+CGG | 0.716143 | tig0022001:+55329 | Msa1396130:CDS |
| TGAGTGACAGTCGATGACTG+AGG | 0.725297 | tig0022001:-55730 | None:intergenic |
| GGTTGCGTGGAAGAAGCTGG+AGG | 0.742260 | tig0022001:+55140 | Msa1396130:CDS |
| TTAGCAGTAGAAGGACCAAG+GGG | 0.749250 | tig0022001:-55417 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAGAAAATGGATAAAA+AGG | + | tig0022001:54975-54994 | Msa1396130:CDS | 15.0% |
| !!! | TTTTAAGAAAATGGATAAAA+AGG | + | tig0022001:54975-54994 | Msa1396130:CDS | 15.0% |
| !!! | AAATCTGGTAACATTATTTT+GGG | - | tig0022001:55388-55407 | None:intergenic | 20.0% |
| !!! | AAGTTTTGGAAGTTTAATTA+TGG | + | tig0022001:55612-55631 | Msa1396130:CDS | 20.0% |
| !! | CAATGACAAAAATATTAGAA+TGG | + | tig0022001:56102-56121 | Msa1396130:CDS | 20.0% |
| !!! | AAATCTGGTAACATTATTTT+GGG | - | tig0022001:55388-55407 | None:intergenic | 20.0% |
| !!! | AAGTTTTGGAAGTTTAATTA+TGG | + | tig0022001:55612-55631 | Msa1396130:CDS | 20.0% |
| !! | CAATGACAAAAATATTAGAA+TGG | + | tig0022001:56102-56121 | Msa1396130:CDS | 20.0% |
| !!! | GGTAATGTCTTTTAAGAAAA+TGG | + | tig0022001:54966-54985 | Msa1396130:CDS | 25.0% |
| ! | AAATGGATAAAAAGGTCAAA+AGG | + | tig0022001:54983-55002 | Msa1396130:CDS | 25.0% |
| !! | CTTTATTTACAATACTCAGT+AGG | + | tig0022001:55232-55251 | Msa1396130:CDS | 25.0% |
| ! | ATTGAAGAGGTAATAAATGT+TGG | + | tig0022001:55273-55292 | Msa1396130:CDS | 25.0% |
| !! | CAAATCTGGTAACATTATTT+TGG | - | tig0022001:55389-55408 | None:intergenic | 25.0% |
| !! | TTTTTACCTGTTACATTATC+CGG | - | tig0022001:55588-55607 | None:intergenic | 25.0% |
| !!! | TTCTTGATTTGCAAAGTAAA+GGG | - | tig0022001:56225-56244 | None:intergenic | 25.0% |
| !!! | TTTCTTGATTTGCAAAGTAA+AGG | - | tig0022001:56226-56245 | None:intergenic | 25.0% |
| !!! | GGTAATGTCTTTTAAGAAAA+TGG | + | tig0022001:54966-54985 | Msa1396130:CDS | 25.0% |
| ! | AAATGGATAAAAAGGTCAAA+AGG | + | tig0022001:54983-55002 | Msa1396130:CDS | 25.0% |
| !! | CTTTATTTACAATACTCAGT+AGG | + | tig0022001:55232-55251 | Msa1396130:CDS | 25.0% |
| ! | ATTGAAGAGGTAATAAATGT+TGG | + | tig0022001:55273-55292 | Msa1396130:CDS | 25.0% |
| !! | CAAATCTGGTAACATTATTT+TGG | - | tig0022001:55389-55408 | None:intergenic | 25.0% |
| !! | TTTTTACCTGTTACATTATC+CGG | - | tig0022001:55588-55607 | None:intergenic | 25.0% |
| !!! | TTCTTGATTTGCAAAGTAAA+GGG | - | tig0022001:56225-56244 | None:intergenic | 25.0% |
| !!! | TTTCTTGATTTGCAAAGTAA+AGG | - | tig0022001:56226-56245 | None:intergenic | 25.0% |
| AATCATGGTTTCGAAATCTA+TGG | + | tig0022001:54596-54615 | Msa1396130:CDS | 30.0% | |
| TCTCAAAATTCTTCAGTCTT+GGG | - | tig0022001:54900-54919 | None:intergenic | 30.0% | |
| TTCTCAAAATTCTTCAGTCT+TGG | - | tig0022001:54901-54920 | None:intergenic | 30.0% | |
| !! | AAGACTGAAGAATTTTGAGA+AGG | + | tig0022001:54900-54919 | Msa1396130:CDS | 30.0% |
| ACGGGTAATAAACATATCAA+AGG | - | tig0022001:54926-54945 | None:intergenic | 30.0% | |
| TTTGATATGTTTATTACCCG+TGG | + | tig0022001:54925-54944 | Msa1396130:CDS | 30.0% | |
| TTCTGATACTCGATCAAATT+CGG | - | tig0022001:55117-55136 | None:intergenic | 30.0% | |
| ! | AGTAGGATCAACAAAGTTTT+TGG | + | tig0022001:55249-55268 | Msa1396130:CDS | 30.0% |
| !!! | CAAAGTTTTTGGAATTGAAG+AGG | + | tig0022001:55260-55279 | Msa1396130:CDS | 30.0% |
| !!! | TAACATTATTTTGGGATGGA+TGG | - | tig0022001:55380-55399 | None:intergenic | 30.0% |
| TAAAACTAGCATTCTTCACT+CGG | + | tig0022001:55464-55483 | Msa1396130:CDS | 30.0% | |
| !!! | TAGAGGCATCAATTTTTTCT+CGG | + | tig0022001:55530-55549 | Msa1396130:CDS | 30.0% |
| ! | TTTTACCTGTTACATTATCC+GGG | - | tig0022001:55587-55606 | None:intergenic | 30.0% |
| TTTCCAAGGGAATATCATTA+GGG | - | tig0022001:55758-55777 | None:intergenic | 30.0% | |
| AATACAGGTATCTTAGAGAT+TGG | + | tig0022001:56314-56333 | Msa1396130:CDS | 30.0% | |
| AATCATGGTTTCGAAATCTA+TGG | + | tig0022001:54596-54615 | Msa1396130:CDS | 30.0% | |
| TCTCAAAATTCTTCAGTCTT+GGG | - | tig0022001:54900-54919 | None:intergenic | 30.0% | |
| TTCTCAAAATTCTTCAGTCT+TGG | - | tig0022001:54901-54920 | None:intergenic | 30.0% | |
| !! | AAGACTGAAGAATTTTGAGA+AGG | + | tig0022001:54900-54919 | Msa1396130:CDS | 30.0% |
| ACGGGTAATAAACATATCAA+AGG | - | tig0022001:54926-54945 | None:intergenic | 30.0% | |
| TTTGATATGTTTATTACCCG+TGG | + | tig0022001:54925-54944 | Msa1396130:CDS | 30.0% | |
| TTCTGATACTCGATCAAATT+CGG | - | tig0022001:55117-55136 | None:intergenic | 30.0% | |
| ! | AGTAGGATCAACAAAGTTTT+TGG | + | tig0022001:55249-55268 | Msa1396130:CDS | 30.0% |
| !!! | CAAAGTTTTTGGAATTGAAG+AGG | + | tig0022001:55260-55279 | Msa1396130:CDS | 30.0% |
| !!! | TAACATTATTTTGGGATGGA+TGG | - | tig0022001:55380-55399 | None:intergenic | 30.0% |
| TAAAACTAGCATTCTTCACT+CGG | + | tig0022001:55464-55483 | Msa1396130:CDS | 30.0% | |
| !!! | TAGAGGCATCAATTTTTTCT+CGG | + | tig0022001:55530-55549 | Msa1396130:CDS | 30.0% |
| ! | TTTTACCTGTTACATTATCC+GGG | - | tig0022001:55587-55606 | None:intergenic | 30.0% |
| TTTCCAAGGGAATATCATTA+GGG | - | tig0022001:55758-55777 | None:intergenic | 30.0% | |
| AATACAGGTATCTTAGAGAT+TGG | + | tig0022001:56314-56333 | Msa1396130:CDS | 30.0% | |
| ! | AATTCTGAGAAAGCAGTGAT+TGG | + | tig0022001:54643-54662 | Msa1396130:CDS | 35.0% |
| GGATAAAAAGGTCAAAAGGA+TGG | + | tig0022001:54987-55006 | Msa1396130:CDS | 35.0% | |
| AATGAAGGTTTACAGTGAGT+CGG | + | tig0022001:55086-55105 | Msa1396130:CDS | 35.0% | |
| ACTTACAGTCTAATTCTGTG+TGG | + | tig0022001:55169-55188 | Msa1396130:CDS | 35.0% | |
| CTCAGAGTTATTGCAATCTT+CGG | + | tig0022001:55353-55372 | Msa1396130:CDS | 35.0% | |
| !!! | CTGGTAACATTATTTTGGGA+TGG | - | tig0022001:55384-55403 | None:intergenic | 35.0% |
| ! | AATGTTACCAGATTTGCTTC+AGG | + | tig0022001:55393-55412 | Msa1396130:CDS | 35.0% |
| TGATCTGATTTAGCAGTAGA+AGG | - | tig0022001:55429-55448 | None:intergenic | 35.0% | |
| !!! | AGAGGCATCAATTTTTTCTC+GGG | + | tig0022001:55531-55550 | Msa1396130:CDS | 35.0% |
| !!! | TTTTTTGAACTTCTTCCGAG+AGG | - | tig0022001:55558-55577 | None:intergenic | 35.0% |
| AAGTTCAAAAAAACCTGTCC+CGG | + | tig0022001:55566-55585 | Msa1396130:CDS | 35.0% | |
| ! | CAGGTAAAAACAGCAAGTTT+TGG | + | tig0022001:55598-55617 | Msa1396130:CDS | 35.0% |
| AAACCCTAATGATATTCCCT+TGG | + | tig0022001:55752-55771 | Msa1396130:CDS | 35.0% | |
| GTTTCCAAGGGAATATCATT+AGG | - | tig0022001:55759-55778 | None:intergenic | 35.0% | |
| TTGTGATTCTGAGTTTCCAA+GGG | - | tig0022001:55771-55790 | None:intergenic | 35.0% | |
| TTTGTGATTCTGAGTTTCCA+AGG | - | tig0022001:55772-55791 | None:intergenic | 35.0% | |
| ! | TTACATTTCCAGGAGTATGA+AGG | - | tig0022001:55809-55828 | None:intergenic | 35.0% |
| GTACAATGAGTTACATTTCC+AGG | - | tig0022001:55819-55838 | None:intergenic | 35.0% | |
| TTGCAAAGAGAACTGAATGT+CGG | - | tig0022001:55846-55865 | None:intergenic | 35.0% | |
| AATAACATTTGCGTAGTGCA+GGG | - | tig0022001:55910-55929 | None:intergenic | 35.0% | |
| TTGCTCACAACATGTTAAGA+TGG | + | tig0022001:56135-56154 | Msa1396130:CDS | 35.0% | |
| TTATGTGTGGAGATATGTGA+AGG | + | tig0022001:56286-56305 | Msa1396130:CDS | 35.0% | |
| GGCAATAGTGTAGTAGATAA+TGG | + | tig0022001:56335-56354 | Msa1396130:CDS | 35.0% | |
| ! | AATTCTGAGAAAGCAGTGAT+TGG | + | tig0022001:54643-54662 | Msa1396130:CDS | 35.0% |
| GGATAAAAAGGTCAAAAGGA+TGG | + | tig0022001:54987-55006 | Msa1396130:CDS | 35.0% | |
| AATGAAGGTTTACAGTGAGT+CGG | + | tig0022001:55086-55105 | Msa1396130:CDS | 35.0% | |
| ACTTACAGTCTAATTCTGTG+TGG | + | tig0022001:55169-55188 | Msa1396130:CDS | 35.0% | |
| CTCAGAGTTATTGCAATCTT+CGG | + | tig0022001:55353-55372 | Msa1396130:CDS | 35.0% | |
| !!! | CTGGTAACATTATTTTGGGA+TGG | - | tig0022001:55384-55403 | None:intergenic | 35.0% |
| ! | AATGTTACCAGATTTGCTTC+AGG | + | tig0022001:55393-55412 | Msa1396130:CDS | 35.0% |
| TGATCTGATTTAGCAGTAGA+AGG | - | tig0022001:55429-55448 | None:intergenic | 35.0% | |
| !!! | AGAGGCATCAATTTTTTCTC+GGG | + | tig0022001:55531-55550 | Msa1396130:CDS | 35.0% |
| !!! | TTTTTTGAACTTCTTCCGAG+AGG | - | tig0022001:55558-55577 | None:intergenic | 35.0% |
| AAGTTCAAAAAAACCTGTCC+CGG | + | tig0022001:55566-55585 | Msa1396130:CDS | 35.0% | |
| ! | CAGGTAAAAACAGCAAGTTT+TGG | + | tig0022001:55598-55617 | Msa1396130:CDS | 35.0% |
| AAACCCTAATGATATTCCCT+TGG | + | tig0022001:55752-55771 | Msa1396130:CDS | 35.0% | |
| GTTTCCAAGGGAATATCATT+AGG | - | tig0022001:55759-55778 | None:intergenic | 35.0% | |
| TTGTGATTCTGAGTTTCCAA+GGG | - | tig0022001:55771-55790 | None:intergenic | 35.0% | |
| TTTGTGATTCTGAGTTTCCA+AGG | - | tig0022001:55772-55791 | None:intergenic | 35.0% | |
| ! | TTACATTTCCAGGAGTATGA+AGG | - | tig0022001:55809-55828 | None:intergenic | 35.0% |
| GTACAATGAGTTACATTTCC+AGG | - | tig0022001:55819-55838 | None:intergenic | 35.0% | |
| TTGCAAAGAGAACTGAATGT+CGG | - | tig0022001:55846-55865 | None:intergenic | 35.0% | |
| AATAACATTTGCGTAGTGCA+GGG | - | tig0022001:55910-55929 | None:intergenic | 35.0% | |
| TTGCTCACAACATGTTAAGA+TGG | + | tig0022001:56135-56154 | Msa1396130:CDS | 35.0% | |
| TTATGTGTGGAGATATGTGA+AGG | + | tig0022001:56286-56305 | Msa1396130:CDS | 35.0% | |
| GGCAATAGTGTAGTAGATAA+TGG | + | tig0022001:56335-56354 | Msa1396130:CDS | 35.0% | |
| TCTATGGAAGACTCAACGTA+AGG | + | tig0022001:54612-54631 | Msa1396130:CDS | 40.0% | |
| GCAGTCTTTGAGTGATAAAC+AGG | + | tig0022001:54717-54736 | Msa1396130:CDS | 40.0% | |
| GCGAGACGAGATTTCAAATT+CGG | + | tig0022001:54750-54769 | Msa1396130:CDS | 40.0% | |
| GACGAGATTTCAAATTCGGT+CGG | + | tig0022001:54754-54773 | Msa1396130:CDS | 40.0% | |
| TCAAGAGATGCTTGAGAGTA+TGG | + | tig0022001:54828-54847 | Msa1396130:CDS | 40.0% | |
| ACCCATACGAATCAAAACCA+CGG | - | tig0022001:54945-54964 | None:intergenic | 40.0% | |
| !!! | TGGTTTTGATTCGTATGGGT+GGG | + | tig0022001:54945-54964 | Msa1396130:CDS | 40.0% |
| CTTCAGAGTTAGCTCAAGAT+CGG | - | tig0022001:55064-55083 | None:intergenic | 40.0% | |
| ! | GCTAACTCTGAAGAGAATGA+AGG | + | tig0022001:55071-55090 | Msa1396130:CDS | 40.0% |
| TTTGATCGAGTATCAGAAGC+AGG | + | tig0022001:55119-55138 | Msa1396130:CDS | 40.0% | |
| AGTCTAATTCTGTGTGGAAC+AGG | + | tig0022001:55175-55194 | Msa1396130:CDS | 40.0% | |
| CCTCGAATGTGATCAGAATT+CGG | - | tig0022001:55321-55340 | None:intergenic | 40.0% | |
| TTTAGCAGTAGAAGGACCAA+GGG | - | tig0022001:55421-55440 | None:intergenic | 40.0% | |
| ATTTAGCAGTAGAAGGACCA+AGG | - | tig0022001:55422-55441 | None:intergenic | 40.0% | |
| CTCTATACTTTCCCGAAATC+GGG | - | tig0022001:55515-55534 | None:intergenic | 40.0% | |
| CCTCTATACTTTCCCGAAAT+CGG | - | tig0022001:55516-55535 | None:intergenic | 40.0% | |
| !!! | AATTTTTTCTCGGGACCTCT+CGG | + | tig0022001:55540-55559 | Msa1396130:CDS | 40.0% |
| ACTCAAGTAGGACCTTTCAA+AGG | + | tig0022001:55687-55706 | Msa1396130:CDS | 40.0% | |
| GATTTAGACCTTCATACTCC+TGG | + | tig0022001:55798-55817 | Msa1396130:CDS | 40.0% | |
| CAATAACATTTGCGTAGTGC+AGG | - | tig0022001:55911-55930 | None:intergenic | 40.0% | |
| CTTAACATGTTGTGAGCAAG+TGG | - | tig0022001:56134-56153 | None:intergenic | 40.0% | |
| ATAATCACCGAGCTTCTTGT+CGG | + | tig0022001:56257-56276 | Msa1396130:CDS | 40.0% | |
| TTGTCGGTCTGAATTATGTG+TGG | + | tig0022001:56273-56292 | Msa1396130:CDS | 40.0% | |
| TATGTGAAGGAGCTCAATAC+AGG | + | tig0022001:56299-56318 | Msa1396130:CDS | 40.0% | |
| TCTATGGAAGACTCAACGTA+AGG | + | tig0022001:54612-54631 | Msa1396130:CDS | 40.0% | |
| GCAGTCTTTGAGTGATAAAC+AGG | + | tig0022001:54717-54736 | Msa1396130:CDS | 40.0% | |
| GCGAGACGAGATTTCAAATT+CGG | + | tig0022001:54750-54769 | Msa1396130:CDS | 40.0% | |
| GACGAGATTTCAAATTCGGT+CGG | + | tig0022001:54754-54773 | Msa1396130:CDS | 40.0% | |
| TCAAGAGATGCTTGAGAGTA+TGG | + | tig0022001:54828-54847 | Msa1396130:CDS | 40.0% | |
| ACCCATACGAATCAAAACCA+CGG | - | tig0022001:54945-54964 | None:intergenic | 40.0% | |
| !!! | TGGTTTTGATTCGTATGGGT+GGG | + | tig0022001:54945-54964 | Msa1396130:CDS | 40.0% |
| CTTCAGAGTTAGCTCAAGAT+CGG | - | tig0022001:55064-55083 | None:intergenic | 40.0% | |
| ! | GCTAACTCTGAAGAGAATGA+AGG | + | tig0022001:55071-55090 | Msa1396130:CDS | 40.0% |
| TTTGATCGAGTATCAGAAGC+AGG | + | tig0022001:55119-55138 | Msa1396130:CDS | 40.0% | |
| AGTCTAATTCTGTGTGGAAC+AGG | + | tig0022001:55175-55194 | Msa1396130:CDS | 40.0% | |
| CCTCGAATGTGATCAGAATT+CGG | - | tig0022001:55321-55340 | None:intergenic | 40.0% | |
| TTTAGCAGTAGAAGGACCAA+GGG | - | tig0022001:55421-55440 | None:intergenic | 40.0% | |
| ATTTAGCAGTAGAAGGACCA+AGG | - | tig0022001:55422-55441 | None:intergenic | 40.0% | |
| CTCTATACTTTCCCGAAATC+GGG | - | tig0022001:55515-55534 | None:intergenic | 40.0% | |
| CCTCTATACTTTCCCGAAAT+CGG | - | tig0022001:55516-55535 | None:intergenic | 40.0% | |
| !!! | AATTTTTTCTCGGGACCTCT+CGG | + | tig0022001:55540-55559 | Msa1396130:CDS | 40.0% |
| ACTCAAGTAGGACCTTTCAA+AGG | + | tig0022001:55687-55706 | Msa1396130:CDS | 40.0% | |
| GATTTAGACCTTCATACTCC+TGG | + | tig0022001:55798-55817 | Msa1396130:CDS | 40.0% | |
| CAATAACATTTGCGTAGTGC+AGG | - | tig0022001:55911-55930 | None:intergenic | 40.0% | |
| CTTAACATGTTGTGAGCAAG+TGG | - | tig0022001:56134-56153 | None:intergenic | 40.0% | |
| ATAATCACCGAGCTTCTTGT+CGG | + | tig0022001:56257-56276 | Msa1396130:CDS | 40.0% | |
| TTGTCGGTCTGAATTATGTG+TGG | + | tig0022001:56273-56292 | Msa1396130:CDS | 40.0% | |
| TATGTGAAGGAGCTCAATAC+AGG | + | tig0022001:56299-56318 | Msa1396130:CDS | 40.0% | |
| TGTCCAAGCTTGTCAATGTG+TGG | + | tig0022001:54695-54714 | Msa1396130:CDS | 45.0% | |
| TGAAATCTCGTCTCGCAACT+TGG | - | tig0022001:54746-54765 | None:intergenic | 45.0% | |
| !!! | ACCCGTGGTTTTGATTCGTA+TGG | + | tig0022001:54940-54959 | Msa1396130:CDS | 45.0% |
| CCCATACGAATCAAAACCAC+GGG | - | tig0022001:54944-54963 | None:intergenic | 45.0% | |
| !!! | CCCGTGGTTTTGATTCGTAT+GGG | + | tig0022001:54941-54960 | Msa1396130:CDS | 45.0% |
| !!! | GTGGTTTTGATTCGTATGGG+TGG | + | tig0022001:54944-54963 | Msa1396130:CDS | 45.0% |
| TGCAAGCTTGTACCAAGAGA+TGG | + | tig0022001:55029-55048 | Msa1396130:CDS | 45.0% | |
| AAGGTTTACAGTGAGTCGGA+CGG | + | tig0022001:55090-55109 | Msa1396130:CDS | 45.0% | |
| ATTCGGAACACTACGATTCG+TGG | - | tig0022001:55304-55323 | None:intergenic | 45.0% | |
| CCGAATTCTGATCACATTCG+AGG | + | tig0022001:55318-55337 | Msa1396130:CDS | 45.0% | |
| TTAGCAGTAGAAGGACCAAG+GGG | - | tig0022001:55420-55439 | None:intergenic | 45.0% | |
| ACTAGCATTCTTCACTCGGT+TGG | + | tig0022001:55468-55487 | Msa1396130:CDS | 45.0% | |
| ! | CCGATTTCGGGAAAGTATAG+AGG | + | tig0022001:55513-55532 | Msa1396130:CDS | 45.0% |
| !! | GTTATTTTCCTTCCCACTCG+TGG | - | tig0022001:55649-55668 | None:intergenic | 45.0% |
| CATAGTCGAGCAACTCAAGT+AGG | + | tig0022001:55675-55694 | Msa1396130:CDS | 45.0% | |
| GATGACTGAGGAACTATCTG+CGG | - | tig0022001:55721-55740 | None:intergenic | 45.0% | |
| !! | ACTTGATTGGTCTCGATGCA+AGG | + | tig0022001:55961-55980 | Msa1396130:CDS | 45.0% |
| !! | CTTGATTGGTCTCGATGCAA+GGG | + | tig0022001:55962-55981 | Msa1396130:CDS | 45.0% |
| ATCTATACAACATGCTGCCG+AGG | + | tig0022001:55988-56007 | Msa1396130:CDS | 45.0% | |
| CATGGAATATGGCTTAAGCC+TGG | - | tig0022001:56036-56055 | None:intergenic | 45.0% | |
| CAGGCTTAAGCCATATTCCA+TGG | + | tig0022001:56034-56053 | Msa1396130:CDS | 45.0% | |
| TAAGCCATATTCCATGGCTG+CGG | + | tig0022001:56040-56059 | Msa1396130:CDS | 45.0% | |
| ACGCAAGTCTAGCAGAAGAA+TGG | + | tig0022001:56072-56091 | Msa1396130:CDS | 45.0% | |
| ATTCAGACCGACAAGAAGCT+CGG | - | tig0022001:56267-56286 | None:intergenic | 45.0% | |
| TGTCCAAGCTTGTCAATGTG+TGG | + | tig0022001:54695-54714 | Msa1396130:CDS | 45.0% | |
| TGAAATCTCGTCTCGCAACT+TGG | - | tig0022001:54746-54765 | None:intergenic | 45.0% | |
| !!! | ACCCGTGGTTTTGATTCGTA+TGG | + | tig0022001:54940-54959 | Msa1396130:CDS | 45.0% |
| CCCATACGAATCAAAACCAC+GGG | - | tig0022001:54944-54963 | None:intergenic | 45.0% | |
| !!! | CCCGTGGTTTTGATTCGTAT+GGG | + | tig0022001:54941-54960 | Msa1396130:CDS | 45.0% |
| !!! | GTGGTTTTGATTCGTATGGG+TGG | + | tig0022001:54944-54963 | Msa1396130:CDS | 45.0% |
| TGCAAGCTTGTACCAAGAGA+TGG | + | tig0022001:55029-55048 | Msa1396130:CDS | 45.0% | |
| AAGGTTTACAGTGAGTCGGA+CGG | + | tig0022001:55090-55109 | Msa1396130:CDS | 45.0% | |
| ATTCGGAACACTACGATTCG+TGG | - | tig0022001:55304-55323 | None:intergenic | 45.0% | |
| CCGAATTCTGATCACATTCG+AGG | + | tig0022001:55318-55337 | Msa1396130:CDS | 45.0% | |
| TTAGCAGTAGAAGGACCAAG+GGG | - | tig0022001:55420-55439 | None:intergenic | 45.0% | |
| ACTAGCATTCTTCACTCGGT+TGG | + | tig0022001:55468-55487 | Msa1396130:CDS | 45.0% | |
| ! | CCGATTTCGGGAAAGTATAG+AGG | + | tig0022001:55513-55532 | Msa1396130:CDS | 45.0% |
| !! | GTTATTTTCCTTCCCACTCG+TGG | - | tig0022001:55649-55668 | None:intergenic | 45.0% |
| CATAGTCGAGCAACTCAAGT+AGG | + | tig0022001:55675-55694 | Msa1396130:CDS | 45.0% | |
| GATGACTGAGGAACTATCTG+CGG | - | tig0022001:55721-55740 | None:intergenic | 45.0% | |
| !! | ACTTGATTGGTCTCGATGCA+AGG | + | tig0022001:55961-55980 | Msa1396130:CDS | 45.0% |
| !! | CTTGATTGGTCTCGATGCAA+GGG | + | tig0022001:55962-55981 | Msa1396130:CDS | 45.0% |
| ATCTATACAACATGCTGCCG+AGG | + | tig0022001:55988-56007 | Msa1396130:CDS | 45.0% | |
| CATGGAATATGGCTTAAGCC+TGG | - | tig0022001:56036-56055 | None:intergenic | 45.0% | |
| CAGGCTTAAGCCATATTCCA+TGG | + | tig0022001:56034-56053 | Msa1396130:CDS | 45.0% | |
| TAAGCCATATTCCATGGCTG+CGG | + | tig0022001:56040-56059 | Msa1396130:CDS | 45.0% | |
| ACGCAAGTCTAGCAGAAGAA+TGG | + | tig0022001:56072-56091 | Msa1396130:CDS | 45.0% | |
| ATTCAGACCGACAAGAAGCT+CGG | - | tig0022001:56267-56286 | None:intergenic | 45.0% | |
| CTGCCACACATTGACAAGCT+TGG | - | tig0022001:54701-54720 | None:intergenic | 50.0% | |
| ! | GCTTGAGAGTATGGCACATG+TGG | + | tig0022001:54837-54856 | Msa1396130:CDS | 50.0% |
| CGGTGAGCATTTCCATCTCT+TGG | - | tig0022001:55044-55063 | None:intergenic | 50.0% | |
| AGGTTTACAGTGAGTCGGAC+GGG | + | tig0022001:55091-55110 | Msa1396130:CDS | 50.0% | |
| AGTATCAGAAGCAGGTTGCG+TGG | + | tig0022001:55127-55146 | Msa1396130:CDS | 50.0% | |
| TGATCACATTCGAGGCAGTC+AGG | + | tig0022001:55326-55345 | Msa1396130:CDS | 50.0% | |
| AAGGGGTCCTGAAGCAAATC+TGG | - | tig0022001:55403-55422 | None:intergenic | 50.0% | |
| ! | AGATTTGCTTCAGGACCCCT+TGG | + | tig0022001:55402-55421 | Msa1396130:CDS | 50.0% |
| GACAAAGTCAGGCCCGATTT+CGG | + | tig0022001:55500-55519 | Msa1396130:CDS | 50.0% | |
| ACAAAGTCAGGCCCGATTTC+GGG | + | tig0022001:55501-55520 | Msa1396130:CDS | 50.0% | |
| CCTGTTACATTATCCGGGAC+AGG | - | tig0022001:55582-55601 | None:intergenic | 50.0% | |
| CCTGTCCCGGATAATGTAAC+AGG | + | tig0022001:55579-55598 | Msa1396130:CDS | 50.0% | |
| GCGGCAATACAGCCTTTGAA+AGG | - | tig0022001:55702-55721 | None:intergenic | 50.0% | |
| TGAGTGACAGTCGATGACTG+AGG | - | tig0022001:55733-55752 | None:intergenic | 50.0% | |
| AAGCCTCCATCTGAATCCCT+TGG | + | tig0022001:55870-55889 | Msa1396130:CDS | 50.0% | |
| GTAGTGCAGGGCTAAAGAAG+CGG | - | tig0022001:55898-55917 | None:intergenic | 50.0% | |
| TCAGCCTCTCCACACTTGAT+TGG | + | tig0022001:55948-55967 | Msa1396130:CDS | 50.0% | |
| GAGACCAATCAAGTGTGGAG+AGG | - | tig0022001:55955-55974 | None:intergenic | 50.0% | |
| GCATCGAGACCAATCAAGTG+TGG | - | tig0022001:55960-55979 | None:intergenic | 50.0% | |
| AGAGAAGCTCTTACACGCCT+CGG | - | tig0022001:56008-56027 | None:intergenic | 50.0% | |
| TAAGAGCTTCTCTCAGGACC+AGG | + | tig0022001:56015-56034 | Msa1396130:CDS | 50.0% | |
| !! | AGCAGCTGAGCTTTGTTTCG+CGG | + | tig0022001:56177-56196 | Msa1396130:CDS | 50.0% |
| TTCGCGGACAAACGTGTTGT+TGG | + | tig0022001:56193-56212 | Msa1396130:CDS | 50.0% | |
| CTGCCACACATTGACAAGCT+TGG | - | tig0022001:54701-54720 | None:intergenic | 50.0% | |
| ! | GCTTGAGAGTATGGCACATG+TGG | + | tig0022001:54837-54856 | Msa1396130:CDS | 50.0% |
| CGGTGAGCATTTCCATCTCT+TGG | - | tig0022001:55044-55063 | None:intergenic | 50.0% | |
| AGGTTTACAGTGAGTCGGAC+GGG | + | tig0022001:55091-55110 | Msa1396130:CDS | 50.0% | |
| AGTATCAGAAGCAGGTTGCG+TGG | + | tig0022001:55127-55146 | Msa1396130:CDS | 50.0% | |
| TGATCACATTCGAGGCAGTC+AGG | + | tig0022001:55326-55345 | Msa1396130:CDS | 50.0% | |
| AAGGGGTCCTGAAGCAAATC+TGG | - | tig0022001:55403-55422 | None:intergenic | 50.0% | |
| ! | AGATTTGCTTCAGGACCCCT+TGG | + | tig0022001:55402-55421 | Msa1396130:CDS | 50.0% |
| GACAAAGTCAGGCCCGATTT+CGG | + | tig0022001:55500-55519 | Msa1396130:CDS | 50.0% | |
| ACAAAGTCAGGCCCGATTTC+GGG | + | tig0022001:55501-55520 | Msa1396130:CDS | 50.0% | |
| CCTGTTACATTATCCGGGAC+AGG | - | tig0022001:55582-55601 | None:intergenic | 50.0% | |
| CCTGTCCCGGATAATGTAAC+AGG | + | tig0022001:55579-55598 | Msa1396130:CDS | 50.0% | |
| GCGGCAATACAGCCTTTGAA+AGG | - | tig0022001:55702-55721 | None:intergenic | 50.0% | |
| TGAGTGACAGTCGATGACTG+AGG | - | tig0022001:55733-55752 | None:intergenic | 50.0% | |
| AAGCCTCCATCTGAATCCCT+TGG | + | tig0022001:55870-55889 | Msa1396130:CDS | 50.0% | |
| GTAGTGCAGGGCTAAAGAAG+CGG | - | tig0022001:55898-55917 | None:intergenic | 50.0% | |
| TCAGCCTCTCCACACTTGAT+TGG | + | tig0022001:55948-55967 | Msa1396130:CDS | 50.0% | |
| GAGACCAATCAAGTGTGGAG+AGG | - | tig0022001:55955-55974 | None:intergenic | 50.0% | |
| GCATCGAGACCAATCAAGTG+TGG | - | tig0022001:55960-55979 | None:intergenic | 50.0% | |
| AGAGAAGCTCTTACACGCCT+CGG | - | tig0022001:56008-56027 | None:intergenic | 50.0% | |
| TAAGAGCTTCTCTCAGGACC+AGG | + | tig0022001:56015-56034 | Msa1396130:CDS | 50.0% | |
| !! | AGCAGCTGAGCTTTGTTTCG+CGG | + | tig0022001:56177-56196 | Msa1396130:CDS | 50.0% |
| TTCGCGGACAAACGTGTTGT+TGG | + | tig0022001:56193-56212 | Msa1396130:CDS | 50.0% | |
| ATGTGGCCGAATCTGTGGCT+AGG | + | tig0022001:54854-54873 | Msa1396130:CDS | 55.0% | |
| CGCAAGCCTAGCCACAGATT+CGG | - | tig0022001:54863-54882 | None:intergenic | 55.0% | |
| TCACATTCGAGGCAGTCAGG+CGG | + | tig0022001:55329-55348 | Msa1396130:CDS | 55.0% | |
| GGCGACTCTTCGACAAAGTC+AGG | + | tig0022001:55489-55508 | Msa1396130:CDS | 55.0% | |
| GCCACTCAACAACCACGAGT+GGG | + | tig0022001:55634-55653 | Msa1396130:CDS | 55.0% | |
| TCCCACTCGTGGTTGTTGAG+TGG | - | tig0022001:55638-55657 | None:intergenic | 55.0% | |
| CTCAACAACCACGAGTGGGA+AGG | + | tig0022001:55638-55657 | Msa1396130:CDS | 55.0% | |
| GCACCAAGGGATTCAGATGG+AGG | - | tig0022001:55876-55895 | None:intergenic | 55.0% | |
| GGCTAAAGAAGCGGCACCAA+GGG | - | tig0022001:55889-55908 | None:intergenic | 55.0% | |
| GGCGTGTAAGAGCTTCTCTC+AGG | + | tig0022001:56009-56028 | Msa1396130:CDS | 55.0% | |
| ACAGCCGCAGCCATGGAATA+TGG | - | tig0022001:56047-56066 | None:intergenic | 55.0% | |
| ATGTGGCCGAATCTGTGGCT+AGG | + | tig0022001:54854-54873 | Msa1396130:CDS | 55.0% | |
| CGCAAGCCTAGCCACAGATT+CGG | - | tig0022001:54863-54882 | None:intergenic | 55.0% | |
| TCACATTCGAGGCAGTCAGG+CGG | + | tig0022001:55329-55348 | Msa1396130:CDS | 55.0% | |
| GGCGACTCTTCGACAAAGTC+AGG | + | tig0022001:55489-55508 | Msa1396130:CDS | 55.0% | |
| GCCACTCAACAACCACGAGT+GGG | + | tig0022001:55634-55653 | Msa1396130:CDS | 55.0% | |
| TCCCACTCGTGGTTGTTGAG+TGG | - | tig0022001:55638-55657 | None:intergenic | 55.0% | |
| CTCAACAACCACGAGTGGGA+AGG | + | tig0022001:55638-55657 | Msa1396130:CDS | 55.0% | |
| GCACCAAGGGATTCAGATGG+AGG | - | tig0022001:55876-55895 | None:intergenic | 55.0% | |
| GGCTAAAGAAGCGGCACCAA+GGG | - | tig0022001:55889-55908 | None:intergenic | 55.0% | |
| GGCGTGTAAGAGCTTCTCTC+AGG | + | tig0022001:56009-56028 | Msa1396130:CDS | 55.0% | |
| ACAGCCGCAGCCATGGAATA+TGG | - | tig0022001:56047-56066 | None:intergenic | 55.0% | |
| GGCACATGTGGCCGAATCTG+TGG | + | tig0022001:54849-54868 | Msa1396130:CDS | 60.0% | |
| GCAGGTTGCGTGGAAGAAGC+TGG | + | tig0022001:55137-55156 | Msa1396130:CDS | 60.0% | |
| GGTTGCGTGGAAGAAGCTGG+AGG | + | tig0022001:55140-55159 | Msa1396130:CDS | 60.0% | |
| GGCCACTCAACAACCACGAG+TGG | + | tig0022001:55633-55652 | Msa1396130:CDS | 60.0% | |
| GCGGCACCAAGGGATTCAGA+TGG | - | tig0022001:55879-55898 | None:intergenic | 60.0% | |
| GGGCTAAAGAAGCGGCACCA+AGG | - | tig0022001:55890-55909 | None:intergenic | 60.0% | |
| GTCGTAAACAGCCGCAGCCA+TGG | - | tig0022001:56054-56073 | None:intergenic | 60.0% | |
| GGCACATGTGGCCGAATCTG+TGG | + | tig0022001:54849-54868 | Msa1396130:CDS | 60.0% | |
| GCAGGTTGCGTGGAAGAAGC+TGG | + | tig0022001:55137-55156 | Msa1396130:CDS | 60.0% | |
| GGTTGCGTGGAAGAAGCTGG+AGG | + | tig0022001:55140-55159 | Msa1396130:CDS | 60.0% | |
| GGCCACTCAACAACCACGAG+TGG | + | tig0022001:55633-55652 | Msa1396130:CDS | 60.0% | |
| GCGGCACCAAGGGATTCAGA+TGG | - | tig0022001:55879-55898 | None:intergenic | 60.0% | |
| GGGCTAAAGAAGCGGCACCA+AGG | - | tig0022001:55890-55909 | None:intergenic | 60.0% | |
| GTCGTAAACAGCCGCAGCCA+TGG | - | tig0022001:56054-56073 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022001 | gene | 54586 | 56379 | 54586 | ID=Msa1396130;Name=Msa1396130 |
| tig0022001 | mRNA | 54586 | 56379 | 54586 | ID=Msa1396130-mRNA-1;Parent=Msa1396130;Name=Msa1396130-mRNA-1;_AED=0.11;_eAED=0.12;_QI=0|-1|0|1|-1|1|1|0|597 |
| tig0022001 | exon | 54586 | 56379 | 54586 | ID=Msa1396130-mRNA-1:exon:15308;Parent=Msa1396130-mRNA-1 |
| tig0022001 | CDS | 54586 | 56379 | 54586 | ID=Msa1396130-mRNA-1:cds;Parent=Msa1396130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
