AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1143020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1143020 MtrunA17_Chr3g0123051 99.424 521 3 0 1 521 1 521 0.0 1071
Msa1143020 MtrunA17_Chr6g0458891 68.138 521 155 4 1 520 1 511 0.0 728
Msa1143020 MtrunA17_Chr3g0119261 64.015 528 171 5 1 513 1 524 0.0 659
Msa1143020 MtrunA17_Chr7g0264871 65.166 422 147 0 83 504 42 463 0.0 577
Msa1143020 MtrunA17_Chr1g0180401 59.322 472 185 3 37 506 16 482 0.0 569
Msa1143020 MtrunA17_Chr1g0210311 55.301 481 202 3 44 512 9 488 0.0 560
Msa1143020 MtrunA17_Chr1g0148671 52.918 514 216 4 1 512 1 490 0.0 548
Msa1143020 MtrunA17_Chr3g0138441 51.692 532 202 4 1 512 1 497 0.0 542
Msa1143020 MtrunA17_Chr4g0062821 50.895 503 225 4 1 500 1 484 0.0 519
Msa1143020 MtrunA17_Chr1g0211361 41.337 404 235 1 103 506 39 440 2.22e-117 353
Msa1143020 MtrunA17_Chr7g0273431 86.441 59 8 0 22 80 58 116 8.06e-26 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1143020 AT3G26020.2 72.157 510 136 3 1 504 1 510 0.0 736
Msa1143020 AT3G26020.5 72.157 510 136 3 1 504 1 510 0.0 736
Msa1143020 AT3G26020.1 72.157 510 136 3 1 504 1 510 0.0 736
Msa1143020 AT3G26020.6 72.157 510 136 3 1 504 1 510 0.0 736
Msa1143020 AT1G13460.2 74.304 467 112 3 40 506 33 491 0.0 724
Msa1143020 AT1G13460.1 74.304 467 112 3 40 506 33 491 0.0 724
Msa1143020 AT4G15415.1 65.497 513 171 4 1 513 1 507 0.0 685
Msa1143020 AT4G15415.4 65.497 513 171 4 1 513 1 507 0.0 685
Msa1143020 AT4G15415.2 65.497 513 171 4 1 513 1 507 0.0 685
Msa1143020 AT4G15415.5 65.497 513 171 4 1 513 1 507 0.0 685
Msa1143020 AT3G21650.1 61.959 531 182 4 1 513 1 529 0.0 662
Msa1143020 AT3G21650.2 61.959 531 182 4 1 513 1 529 0.0 662
Msa1143020 AT3G26020.4 61.290 558 133 5 1 504 1 529 0.0 640
Msa1143020 AT3G26020.7 62.107 541 139 7 1 504 1 512 0.0 622
Msa1143020 AT3G26020.8 62.107 541 139 7 1 504 1 512 0.0 622
Msa1143020 AT3G26020.3 62.107 541 139 7 1 504 1 512 0.0 622
Msa1143020 AT3G26030.1 56.832 505 187 5 1 503 1 476 0.0 592
Msa1143020 AT3G09880.1 60.127 474 181 2 40 506 18 490 0.0 584
Msa1143020 AT5G03470.1 56.461 503 201 4 1 502 1 486 0.0 564
Msa1143020 AT5G25510.1 51.631 521 227 5 1 520 1 497 0.0 532
Msa1143020 AT4G15415.3 64.851 404 136 4 1 404 1 398 0.0 528
Msa1143020 AT3G54930.2 55.794 466 194 2 40 503 41 496 0.0 521
Msa1143020 AT3G54930.1 55.794 466 194 2 40 503 41 496 0.0 521
Msa1143020 AT3G54930.3 55.041 367 153 2 40 404 41 397 4.74e-136 400

Find 114 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATTTAATACCTGAAAA+TGG 0.154967 7_4:-18219817 None:intergenic
AGAAGAGCATAAATTGTTTC+TGG 0.170362 7_4:+18219523 Msa1143020:CDS
ATGAAGCTTTACCAGCATTT+AGG 0.170397 7_4:+18218871 Msa1143020:CDS
ATTCAAGAAATTGCCTTTCT+TGG 0.200582 7_4:-18223386 None:intergenic
GCTTAATCTTCTTTGTTGTT+TGG 0.228935 7_4:-18218275 None:intergenic
CTTAATCTTCTTTGTTGTTT+GGG 0.233357 7_4:-18218274 None:intergenic
CCCTTACCTAGATAAGAAAA+AGG 0.235090 7_4:+18218479 Msa1143020:five_prime_UTR
TGAAGCTTTACCAGCATTTA+GGG 0.264284 7_4:+18218872 Msa1143020:CDS
TCCTTTGAACTATTTGTTAT+CGG 0.271122 7_4:-18219683 None:intergenic
CAAACTTTGATTCACCGAAT+TGG 0.282750 7_4:+18218396 Msa1143020:five_prime_UTR
AGTTCAATTCAAAATCATTA+TGG 0.295945 7_4:+18218430 Msa1143020:five_prime_UTR
TTGATGAACTATGTTCAAAA+AGG 0.297427 7_4:+18218608 Msa1143020:exon
ATGTCTTTGCATCGGATCTA+TGG 0.305697 7_4:+18219353 Msa1143020:CDS
TCGGATCTATGGCAAGTTAA+TGG 0.326598 7_4:+18219364 Msa1143020:CDS
GAACATTTAAAGTCAAACTA+TGG 0.333782 7_4:-18223078 None:intergenic
ATTCTGGGGAGTATCATTAA+TGG 0.341716 7_4:+18219482 Msa1143020:CDS
CATTGATGGCGTTGAATTAG+AGG 0.343144 7_4:+18219145 Msa1143020:CDS
CTTTGACATTCACTTCCTAT+AGG 0.349671 7_4:+18223410 Msa1143020:three_prime_UTR
CAGAATCATCATCTTCATAT+CGG 0.351588 7_4:+18218519 Msa1143020:five_prime_UTR
AAACTTTGATTCACCGAATT+GGG 0.352067 7_4:+18218397 Msa1143020:five_prime_UTR
AAAATTTAATACCTGAAAAT+GGG 0.353230 7_4:-18219816 None:intergenic
CCATTGGAATTCTCATTCAT+AGG 0.353655 7_4:-18218834 None:intergenic
ACCATACATCGCTGGAATTC+TGG 0.359106 7_4:-18219755 None:intergenic
CTCTCTTTCTCTAGGATCTT+CGG 0.365168 7_4:-18219321 None:intergenic
AATTTATGCTCTTCTTTCAA+TGG 0.371325 7_4:-18219515 None:intergenic
CAACCTGGGAGTAGCAAAAC+TGG 0.401143 7_4:+18218741 Msa1143020:CDS
CGATATGAAGATGATGATTC+TGG 0.402321 7_4:-18218518 None:intergenic
CGTGAGAATAAGCTCATTGA+TGG 0.406564 7_4:+18219131 Msa1143020:CDS
TTATTGCATTACTCAGTTTG+TGG 0.408341 7_4:+18219607 Msa1143020:CDS
GGAGATTAAGAGACAAGCTT+TGG 0.411887 7_4:+18218995 Msa1143020:CDS
CGGAAAGAGCTTTGTTCTTG+TGG 0.412229 7_4:+18222948 Msa1143020:CDS
ATAAGCAAAATGCACTAGTT+AGG 0.419004 7_4:-18223493 None:intergenic
TGGGTTGAAAAGAGAGAGAA+AGG 0.424031 7_4:-18218255 None:intergenic
TTTGAGACTGAGAAGCATAA+TGG 0.425058 7_4:+18219440 Msa1143020:CDS
GTTACTTGCAGCTTTCTTTG+CGG 0.431372 7_4:-18223230 None:intergenic
ACTTTGAAGCATACCCAATT+CGG 0.436604 7_4:-18218410 None:intergenic
ATCTGCAGGTTAGATAGAAA+TGG 0.436689 7_4:+18223288 Msa1143020:exon
AGCTTATTCTCACGCGGTTG+AGG 0.441683 7_4:-18219122 None:intergenic
TGACCCTACTAAGCATCTTA+AGG 0.444211 7_4:+18218968 Msa1143020:CDS
TCTAATTCTTCTTTGAATGC+AGG 0.444424 7_4:+18218771 Msa1143020:CDS
GCCAACTTTGCATCCAGCTC+AGG 0.444703 7_4:-18219245 None:intergenic
TCCCATCATCTTTCCCGCGT+TGG 0.446029 7_4:+18223021 Msa1143020:CDS
ACTTGCTGATACAATCATAA+GGG 0.446448 7_4:+18219643 Msa1143020:CDS
TGGCGCATCGACCTTTCATC+AGG 0.446680 7_4:+18219384 Msa1143020:CDS
AAAATGCACTAGTTAGGCTT+TGG 0.448186 7_4:-18223487 None:intergenic
CTCCAACGCGGGAAAGATGA+TGG 0.449918 7_4:-18223023 None:intergenic
TTCAAATACTCTCTTTCTCT+AGG 0.456945 7_4:-18219329 None:intergenic
ATAAGAATTAAAATTACCAT+TGG 0.460065 7_4:-18218850 None:intergenic
ACCTGAGCTGGATGCAAAGT+TGG 0.460914 7_4:+18219244 Msa1143020:CDS
TCCAGAATTCCAGCGATGTA+TGG 0.464531 7_4:+18219754 Msa1143020:CDS
AAATAGCCTTCAATTCCTAT+AGG 0.465971 7_4:-18223425 None:intergenic
TACTAAGCATCTTAAGGAAA+AGG 0.466933 7_4:+18218974 Msa1143020:CDS
TCACTTCCTATAGGAATTGA+AGG 0.467315 7_4:+18223419 Msa1143020:three_prime_UTR
AGTGATGTTGCTACACAACC+TGG 0.472891 7_4:+18218726 Msa1143020:CDS
TCAAAGGAAGTTATGTTCCT+AGG 0.480411 7_4:+18219698 Msa1143020:CDS
AACTTGCTGATACAATCATA+AGG 0.482131 7_4:+18219642 Msa1143020:CDS
AGAATCATCATCTTCATATC+GGG 0.486218 7_4:+18218520 Msa1143020:five_prime_UTR
TGTGATGGGTTGGCCAAGAA+AGG 0.487462 7_4:+18223373 Msa1143020:three_prime_UTR
CAGAACAAACACAAAGAAGA+AGG 0.490537 7_4:-18218584 None:intergenic
ATTTGTTGCATCACCTGAGC+TGG 0.492210 7_4:+18219232 Msa1143020:CDS
ATGGTGAAAATTAGAGAAGT+GGG 0.492325 7_4:+18218449 Msa1143020:five_prime_UTR
TTGATTGATTTCCTGATGAA+AGG 0.494201 7_4:-18219395 None:intergenic
CGAAGCCACATGGAAACGCT+TGG 0.500307 7_4:+18223198 Msa1143020:CDS
CAGCAGGGCGCGAAGCCACA+TGG 0.503391 7_4:+18223188 Msa1143020:CDS
TGATACATTGCTAAGCACTT+TGG 0.506415 7_4:-18219572 None:intergenic
TTTCCTTAAGATGCTTAGTA+GGG 0.507948 7_4:-18218971 None:intergenic
GCACTACCTCGCAAATCTGC+AGG 0.509546 7_4:+18223274 Msa1143020:CDS
ATTTGAAAATGTCTTTGCAT+CGG 0.516512 7_4:+18219345 Msa1143020:CDS
AGTTATGTTCCTAGGTGAGT+TGG 0.516615 7_4:+18219706 Msa1143020:CDS
TCATAAACAATTTGCAAATG+AGG 0.517103 7_4:-18219197 None:intergenic
AGGTGAGTTGGAGGAAGTCT+TGG 0.518621 7_4:+18219718 Msa1143020:CDS
TATGGTGAAAATTAGAGAAG+TGG 0.520205 7_4:+18218448 Msa1143020:five_prime_UTR
GGCTATTTATTATTAAGTAG+TGG 0.520358 7_4:+18223440 Msa1143020:three_prime_UTR
AAGGAAGGTGAAGTGACAGC+AGG 0.527915 7_4:+18223172 Msa1143020:CDS
GAGATCAGAAACAGTGGTGG+TGG 0.531625 7_4:-18218351 None:intergenic
TATGTTCCTAGGTGAGTTGG+AGG 0.533910 7_4:+18219709 Msa1143020:CDS
AAGCACTTTGGTTTGTGCAA+CGG 0.534767 7_4:-18219560 None:intergenic
TTCGGAACATCCCTAAATGC+TGG 0.537273 7_4:-18218882 None:intergenic
TACTGAGAATGTAATGCAAG+AGG 0.549162 7_4:+18219058 Msa1143020:CDS
TGGCGTTGAATTAGAGGAGG+AGG 0.556878 7_4:+18219151 Msa1143020:CDS
GCCGATAACAAATAGTTCAA+AGG 0.558222 7_4:+18219682 Msa1143020:CDS
CAAGGACAGTTTCATAGTCA+TGG 0.562679 7_4:+18218795 Msa1143020:CDS
CACATGGAAACGCTTGGAGG+AGG 0.564031 7_4:+18223204 Msa1143020:CDS
AGCCTTCGATGGATCCTTCG+TGG 0.564901 7_4:+18219174 Msa1143020:CDS
TTTGTATTTCTCTCCAACGC+GGG 0.566060 7_4:-18223034 None:intergenic
AAATTTAATACCTGAAAATG+GGG 0.572594 7_4:-18219815 None:intergenic
GTTTGAGCAAGACGAATCAA+AGG 0.576642 7_4:+18223153 Msa1143020:CDS
TCTTCTTTGAATGCAGGACA+AGG 0.584808 7_4:+18218777 Msa1143020:CDS
GGTTCTGAGAATCGTGAACA+AGG 0.586207 7_4:+18218663 Msa1143020:CDS
AATGCAAGAGGTTGTTAAGA+TGG 0.587807 7_4:+18219070 Msa1143020:CDS
AGAGGAGGAGGAGCCTTCGA+TGG 0.596230 7_4:+18219163 Msa1143020:CDS
ACAATAGCACCATACATCGC+TGG 0.596620 7_4:-18219763 None:intergenic
TCCAACGCGGGAAAGATGAT+GGG 0.597175 7_4:-18223022 None:intergenic
CTTGCTGATACAATCATAAG+GGG 0.598460 7_4:+18219644 Msa1143020:CDS
GGTGGAAATTCAAGAAGCCA+TGG 0.599824 7_4:+18218684 Msa1143020:CDS
CCTATGAATGAGAATTCCAA+TGG 0.604698 7_4:+18218834 Msa1143020:CDS
GTTTGATTAAGTTCACGATG+TGG 0.613263 7_4:-18222979 None:intergenic
ATCTAACCTGCAGATTTGCG+AGG 0.619938 7_4:-18223280 None:intergenic
AGCCACATGGAAACGCTTGG+AGG 0.620869 7_4:+18223201 Msa1143020:CDS
CTCCTCCAAGCGTTTCCATG+TGG 0.625054 7_4:-18223203 None:intergenic
AGACTTCCTCCAACTCACCT+AGG 0.632209 7_4:-18219715 None:intergenic
AGGAAGGTGAAGTGACAGCA+GGG 0.635472 7_4:+18223173 Msa1143020:CDS
GAGCAAGACGAATCAAAGGA+AGG 0.642249 7_4:+18223157 Msa1143020:CDS
TGATGGCGTTGAATTAGAGG+AGG 0.644796 7_4:+18219148 Msa1143020:CDS
ATTTGCAAATGAGGCCACGA+AGG 0.651420 7_4:-18219188 None:intergenic
GGCCACGAAGGATCCATCGA+AGG 0.651471 7_4:-18219176 None:intergenic
TTTGAGATCAGAAACAGTGG+TGG 0.652847 7_4:-18218354 None:intergenic
GTGATGTTGCTACACAACCT+GGG 0.664966 7_4:+18218727 Msa1143020:CDS
AATTTAATACCTGAAAATGG+GGG 0.674910 7_4:-18219814 None:intergenic
ATACATCGCTGGAATTCTGG+AGG 0.675794 7_4:-18219752 None:intergenic
TATTCAAACAATGAGAAACA+CGG 0.684922 7_4:-18219790 None:intergenic
TCTGAGAATCGTGAACAAGG+TGG 0.686992 7_4:+18218666 Msa1143020:CDS
TCAATGAGCTTATTCTCACG+CGG 0.708503 7_4:-18219128 None:intergenic
TTGCTGATACAATCATAAGG+GGG 0.715338 7_4:+18219645 Msa1143020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGAATTAAAATTACCAT+TGG - chr7_4:18218853-18218872 None:intergenic 15.0%
!! AAAATTTAATACCTGAAAAT+GGG - chr7_4:18219819-18219838 None:intergenic 15.0%
!!! AAATTATATAAAGCGTTTTA+TGG + chr7_4:18221618-18221637 Msa1143020:intron 15.0%
!! AGTTCAATTCAAAATCATTA+TGG + chr7_4:18218430-18218449 Msa1143020:five_prime_UTR 20.0%
!!! TGTTTTCTAGATTTGAAAAA+AGG + chr7_4:18218549-18218568 Msa1143020:five_prime_UTR 20.0%
!!! GTTTTCTAGATTTGAAAAAA+GGG + chr7_4:18218550-18218569 Msa1143020:five_prime_UTR 20.0%
!! AAATTTAATACCTGAAAATG+GGG - chr7_4:18219818-18219837 None:intergenic 20.0%
!! GAAAATTTAATACCTGAAAA+TGG - chr7_4:18219820-18219839 None:intergenic 20.0%
!! AAAAACATCATCTTAAAGTT+AGG + chr7_4:18219888-18219907 Msa1143020:intron 20.0%
!! CATATATGCATAACTAATTA+AGG + chr7_4:18220166-18220185 Msa1143020:intron 20.0%
!! TTAGCTAATTTAAAAGCTTA+TGG + chr7_4:18220432-18220451 Msa1143020:intron 20.0%
!! AAGAATAATCCAAAAGTTAA+AGG - chr7_4:18220548-18220567 None:intergenic 20.0%
!! ATATAAAAGTAACTTTGTAG+AGG - chr7_4:18221703-18221722 None:intergenic 20.0%
!!! TTTTGTCTAGTAATTGTAAT+AGG + chr7_4:18222089-18222108 Msa1143020:intron 20.0%
!! AACAATTATATGCTATATGT+TGG + chr7_4:18222165-18222184 Msa1143020:intron 20.0%
!!! GCTCTAAAAATTCAATAAAT+TGG - chr7_4:18222372-18222391 None:intergenic 20.0%
!! TTTACATTTAGAAGGTTTAA+GGG - chr7_4:18222492-18222511 None:intergenic 20.0%
!!! AATTATTGTTTGGCTTTTAT+TGG - chr7_4:18222830-18222849 None:intergenic 20.0%
!!! ATAGCTTCATTTTTTAAGAA+CGG + chr7_4:18223328-18223347 Msa1143020:three_prime_UTR 20.0%
!!! CGGATTTTATAGTATTTTTT+TGG + chr7_4:18223348-18223367 Msa1143020:three_prime_UTR 20.0%
!!! CTTAATCTTCTTTGTTGTTT+GGG - chr7_4:18218277-18218296 None:intergenic 25.0%
! TTGATGAACTATGTTCAAAA+AGG + chr7_4:18218608-18218627 Msa1143020:exon 25.0%
!!! ACTATGTTCAAAAAGGTATT+TGG + chr7_4:18218615-18218634 Msa1143020:exon 25.0%
!!! AGCTTTTTTATAAACAAGCT+CGG - chr7_4:18218918-18218937 None:intergenic 25.0%
! TCATAAACAATTTGCAAATG+AGG - chr7_4:18219200-18219219 None:intergenic 25.0%
!!! TTGATCAATCGTTTATTTTG+AGG + chr7_4:18219279-18219298 Msa1143020:CDS 25.0%
! ATTTGAAAATGTCTTTGCAT+CGG + chr7_4:18219345-18219364 Msa1143020:CDS 25.0%
! AATTTATGCTCTTCTTTCAA+TGG - chr7_4:18219518-18219537 None:intergenic 25.0%
!!! TCCTTTGAACTATTTGTTAT+CGG - chr7_4:18219686-18219705 None:intergenic 25.0%
! TATTCAAACAATGAGAAACA+CGG - chr7_4:18219793-18219812 None:intergenic 25.0%
! AATTTAATACCTGAAAATGG+GGG - chr7_4:18219817-18219836 None:intergenic 25.0%
!!! TTTTTTCAACGAAAAAAGAG+CGG - chr7_4:18219872-18219891 None:intergenic 25.0%
! CAATAAGTACAACAATCATA+TGG - chr7_4:18219938-18219957 None:intergenic 25.0%
!!! TGAAAAGTATATCCTTTTCT+TGG - chr7_4:18219980-18219999 None:intergenic 25.0%
! CATATGATTATGACATTCTA+TGG - chr7_4:18220137-18220156 None:intergenic 25.0%
! GTTATAAGACACATATTTAC+TGG - chr7_4:18220214-18220233 None:intergenic 25.0%
! ATTTAAAAGCTTATGGTCTT+AGG + chr7_4:18220439-18220458 Msa1143020:intron 25.0%
!! TTAGTTGATGTTGCATTATT+GGG - chr7_4:18220471-18220490 None:intergenic 25.0%
!! TTTAGTTGATGTTGCATTAT+TGG - chr7_4:18220472-18220491 None:intergenic 25.0%
!!! CTTCTTTTACCTTTAACTTT+TGG + chr7_4:18220536-18220555 Msa1143020:intron 25.0%
! AATTCAGATAATATTCACAG+TGG - chr7_4:18220657-18220676 None:intergenic 25.0%
! TTTATGGGGAAAAATAGAAT+CGG - chr7_4:18220701-18220720 None:intergenic 25.0%
! ATAAGAATGTTATGTTGGAT+AGG - chr7_4:18220728-18220747 None:intergenic 25.0%
! CAGAAATAAGAATGTTATGT+TGG - chr7_4:18220733-18220752 None:intergenic 25.0%
!!! AATTTTCCTTTAAGCTTTAG+AGG + chr7_4:18220837-18220856 Msa1143020:intron 25.0%
! AAGTAGAAAAGATGAAATGA+AGG - chr7_4:18220896-18220915 None:intergenic 25.0%
! ACCAAAACTATAGAAATTTG+TGG - chr7_4:18221062-18221081 None:intergenic 25.0%
! TTCCATGCATATGTTTAAAA+AGG - chr7_4:18221209-18221228 None:intergenic 25.0%
!!! GAACAAACTGTAACTTTTTT+CGG - chr7_4:18221284-18221303 None:intergenic 25.0%
! AAGATCTATTGTTATGTATG+AGG + chr7_4:18221409-18221428 Msa1143020:intron 25.0%
! AGATCTATTGTTATGTATGA+GGG + chr7_4:18221410-18221429 Msa1143020:intron 25.0%
! ATCAAAAATAACTGCTAACA+GGG - chr7_4:18221495-18221514 None:intergenic 25.0%
! AATCAAAAATAACTGCTAAC+AGG - chr7_4:18221496-18221515 None:intergenic 25.0%
! TTTCTATTGATATGTCAAAC+AGG + chr7_4:18221667-18221686 Msa1143020:intron 25.0%
! AAACCTTCCTAAATTATGAA+GGG - chr7_4:18221733-18221752 None:intergenic 25.0%
! TAAACCTTCCTAAATTATGA+AGG - chr7_4:18221734-18221753 None:intergenic 25.0%
! TCATTCTTGTCTATTATACA+CGG - chr7_4:18221951-18221970 None:intergenic 25.0%
! CAATTACTAGACAAAACTTA+TGG - chr7_4:18222085-18222104 None:intergenic 25.0%
!! CTTCATAGTTTCAAGTAAAA+TGG - chr7_4:18222335-18222354 None:intergenic 25.0%
!! TTTTCTTTCATTACATGTCT+CGG + chr7_4:18222410-18222429 Msa1143020:intron 25.0%
! CTTTACATTTAGAAGGTTTA+AGG - chr7_4:18222493-18222512 None:intergenic 25.0%
! CTTTGTTCTTTACATTTAGA+AGG - chr7_4:18222500-18222519 None:intergenic 25.0%
!!! AAACACTTCTAGAATGAAAT+TGG - chr7_4:18222547-18222566 None:intergenic 25.0%
! ACTCTGCATAAATTATTGTT+TGG - chr7_4:18222840-18222859 None:intergenic 25.0%
! AGAGAAATACAAAAACTCAT+TGG + chr7_4:18223044-18223063 Msa1143020:CDS 25.0%
!! GAACATTTAAAGTCAAACTA+TGG - chr7_4:18223081-18223100 None:intergenic 25.0%
! GGCTATTTATTATTAAGTAG+TGG + chr7_4:18223440-18223459 Msa1143020:three_prime_UTR 25.0%
!! GCTTAATCTTCTTTGTTGTT+TGG - chr7_4:18218278-18218297 None:intergenic 30.0%
AAACTTTGATTCACCGAATT+GGG + chr7_4:18218397-18218416 Msa1143020:five_prime_UTR 30.0%
TATGGTGAAAATTAGAGAAG+TGG + chr7_4:18218448-18218467 Msa1143020:five_prime_UTR 30.0%
ATGGTGAAAATTAGAGAAGT+GGG + chr7_4:18218449-18218468 Msa1143020:five_prime_UTR 30.0%
! CCTTTTTCTTATCTAGGTAA+GGG - chr7_4:18218482-18218501 None:intergenic 30.0%
CCTTACCTAGATAAGAAAAA+GGG + chr7_4:18218480-18218499 Msa1143020:five_prime_UTR 30.0%
! ACAAACCCTTTTTCTTATCT+AGG - chr7_4:18218488-18218507 None:intergenic 30.0%
CAGAATCATCATCTTCATAT+CGG + chr7_4:18218519-18218538 Msa1143020:five_prime_UTR 30.0%
AGAATCATCATCTTCATATC+GGG + chr7_4:18218520-18218539 Msa1143020:five_prime_UTR 30.0%
ATTCCTAAAAAGTCCTCAAA+AGG + chr7_4:18218642-18218661 Msa1143020:CDS 30.0%
TCTAATTCTTCTTTGAATGC+AGG + chr7_4:18218771-18218790 Msa1143020:CDS 30.0%
! TATAAACAAGCTCGGTTTTT+CGG - chr7_4:18218910-18218929 None:intergenic 30.0%
TTTCCTTAAGATGCTTAGTA+GGG - chr7_4:18218974-18218993 None:intergenic 30.0%
! TTTTCCTTAAGATGCTTAGT+AGG - chr7_4:18218975-18218994 None:intergenic 30.0%
TACTAAGCATCTTAAGGAAA+AGG + chr7_4:18218974-18218993 Msa1143020:CDS 30.0%
TTCAAATACTCTCTTTCTCT+AGG - chr7_4:18219332-18219351 None:intergenic 30.0%
! TTGATTGATTTCCTGATGAA+AGG - chr7_4:18219398-18219417 None:intergenic 30.0%
! TAATGGAATTGCTGAGTTTT+TGG + chr7_4:18219457-18219476 Msa1143020:CDS 30.0%
! AGAAGAGCATAAATTGTTTC+TGG + chr7_4:18219523-18219542 Msa1143020:CDS 30.0%
TTATTGCATTACTCAGTTTG+TGG + chr7_4:18219607-18219626 Msa1143020:CDS 30.0%
!! AACTTGCTGATACAATCATA+AGG + chr7_4:18219642-18219661 Msa1143020:CDS 30.0%
! ACTTGCTGATACAATCATAA+GGG + chr7_4:18219643-18219662 Msa1143020:CDS 30.0%
AGTTGTAAGTATGTGTCTTA+AGG - chr7_4:18220038-18220057 None:intergenic 30.0%
TGGATTACAACAAATAACCA+GGG - chr7_4:18220117-18220136 None:intergenic 30.0%
! ATGGATTACAACAAATAACC+AGG - chr7_4:18220118-18220137 None:intergenic 30.0%
!! ATTTTTCAAACACCTTTTGC+AGG - chr7_4:18220317-18220336 None:intergenic 30.0%
TTAATCTTGATGCAAGCTTA+AGG + chr7_4:18220351-18220370 Msa1143020:intron 30.0%
! CTCTCTTGTGCTATTAATTT+CGG + chr7_4:18220400-18220419 Msa1143020:intron 30.0%
!! AAAGTACCTCTAAAGCTTAA+AGG - chr7_4:18220846-18220865 None:intergenic 30.0%
! TGGAAATTTTCAGCTGTAAT+TGG - chr7_4:18220960-18220979 None:intergenic 30.0%
TGTACTTTCACTTTCATCAA+TGG - chr7_4:18220983-18221002 None:intergenic 30.0%
! GCCACAAATTTCTATAGTTT+TGG + chr7_4:18221058-18221077 Msa1143020:intron 30.0%
! CACCTTTTTAAACATATGCA+TGG + chr7_4:18221204-18221223 Msa1143020:intron 30.0%
!!! ACTGTAACTTTTTTCGGATT+GGG - chr7_4:18221278-18221297 None:intergenic 30.0%
!!! AACTGTAACTTTTTTCGGAT+TGG - chr7_4:18221279-18221298 None:intergenic 30.0%
AGTGAGTTCAATATCTCATA+TGG + chr7_4:18221333-18221352 Msa1143020:intron 30.0%
! GGTGTCATAAATGTAGTAAT+TGG - chr7_4:18221474-18221493 None:intergenic 30.0%
AGTATCATAAACTCTTCTCA+AGG - chr7_4:18221592-18221611 None:intergenic 30.0%
!! TAAAAGTGTTTGTAAGCTTG+TGG + chr7_4:18221765-18221784 Msa1143020:intron 30.0%
! CTTGAAGGTAATTTTTGTGT+TGG + chr7_4:18221788-18221807 Msa1143020:intron 30.0%
AGCTGTGACGATAAATAATT+AGG + chr7_4:18221975-18221994 Msa1143020:intron 30.0%
TGTGACGATAAATAATTAGG+TGG + chr7_4:18221978-18221997 Msa1143020:intron 30.0%
ATAAAGTATAGACGATTTGC+AGG - chr7_4:18222015-18222034 None:intergenic 30.0%
AAGACATACTATATTCTGTC+AGG + chr7_4:18222129-18222148 Msa1143020:intron 30.0%
GACGAATCTAAATTTGACAT+GGG - chr7_4:18222265-18222284 None:intergenic 30.0%
TGACGAATCTAAATTTGACA+TGG - chr7_4:18222266-18222285 None:intergenic 30.0%
AAGAAAAAATGACAGAACAC+TGG - chr7_4:18222397-18222416 None:intergenic 30.0%
! ATTTTTCTTCGTCTTTTGCA+TGG + chr7_4:18222609-18222628 Msa1143020:intron 30.0%
!! TTTGTTGCTTTCTTCATTGA+TGG + chr7_4:18222636-18222655 Msa1143020:intron 30.0%
!! TTGTTGCTTTCTTCATTGAT+GGG + chr7_4:18222637-18222656 Msa1143020:intron 30.0%
AATTCAAGATTTAGGCACAT+AGG - chr7_4:18222667-18222686 None:intergenic 30.0%
TCTACAGCAATTCAAGATTT+AGG - chr7_4:18222675-18222694 None:intergenic 30.0%
AAATCTTGAATTGCTGTAGA+AGG + chr7_4:18222675-18222694 Msa1143020:intron 30.0%
GATTATATGCATCAAGTGAA+TGG + chr7_4:18222773-18222792 Msa1143020:intron 30.0%
!! TTTTGAGAAAGATCCAACTT+TGG + chr7_4:18222803-18222822 Msa1143020:intron 30.0%
TTTGAGAAAGATCCAACTTT+GGG + chr7_4:18222804-18222823 Msa1143020:intron 30.0%
! ACTGATATTGTCTTTGTTTC+AGG + chr7_4:18222922-18222941 Msa1143020:intron 30.0%
!!! AGTATTTTTTTGGCATGTGA+TGG + chr7_4:18223358-18223377 Msa1143020:three_prime_UTR 30.0%
!!! GTATTTTTTTGGCATGTGAT+GGG + chr7_4:18223359-18223378 Msa1143020:three_prime_UTR 30.0%
ATTCAAGAAATTGCCTTTCT+TGG - chr7_4:18223389-18223408 None:intergenic 30.0%
AAATAGCCTTCAATTCCTAT+AGG - chr7_4:18223428-18223447 None:intergenic 30.0%
ATAAGCAAAATGCACTAGTT+AGG - chr7_4:18223496-18223515 None:intergenic 30.0%
!!! CTTTTTGAGATCAGAAACAG+TGG - chr7_4:18218360-18218379 None:intergenic 35.0%
CAAACTTTGATTCACCGAAT+TGG + chr7_4:18218396-18218415 Msa1143020:five_prime_UTR 35.0%
!! ACTTTGAAGCATACCCAATT+CGG - chr7_4:18218413-18218432 None:intergenic 35.0%
CCCTTACCTAGATAAGAAAA+AGG + chr7_4:18218479-18218498 Msa1143020:five_prime_UTR 35.0%
! CCCTTTTTCTTATCTAGGTA+AGG - chr7_4:18218483-18218502 None:intergenic 35.0%
CGATATGAAGATGATGATTC+TGG - chr7_4:18218521-18218540 None:intergenic 35.0%
CAGAACAAACACAAAGAAGA+AGG - chr7_4:18218587-18218606 None:intergenic 35.0%
!! GAACCTTTTGAGGACTTTTT+AGG - chr7_4:18218648-18218667 None:intergenic 35.0%
!!! AGCAACATCACTGTTTTTTG+AGG - chr7_4:18218718-18218737 None:intergenic 35.0%
CCATTGGAATTCTCATTCAT+AGG - chr7_4:18218837-18218856 None:intergenic 35.0%
CCTATGAATGAGAATTCCAA+TGG + chr7_4:18218834-18218853 Msa1143020:CDS 35.0%
ATGAAGCTTTACCAGCATTT+AGG + chr7_4:18218871-18218890 Msa1143020:CDS 35.0%
TGAAGCTTTACCAGCATTTA+GGG + chr7_4:18218872-18218891 Msa1143020:CDS 35.0%
TACTGAGAATGTAATGCAAG+AGG + chr7_4:18219058-18219077 Msa1143020:CDS 35.0%
AATGCAAGAGGTTGTTAAGA+TGG + chr7_4:18219070-18219089 Msa1143020:CDS 35.0%
! TTTGAGACTGAGAAGCATAA+TGG + chr7_4:18219440-18219459 Msa1143020:CDS 35.0%
!! TGCTGAGTTTTTGGAAATTC+TGG + chr7_4:18219466-18219485 Msa1143020:CDS 35.0%
!! GCTGAGTTTTTGGAAATTCT+GGG + chr7_4:18219467-18219486 Msa1143020:CDS 35.0%
!! CTGAGTTTTTGGAAATTCTG+GGG + chr7_4:18219468-18219487 Msa1143020:CDS 35.0%
!! ATTCTGGGGAGTATCATTAA+TGG + chr7_4:18219482-18219501 Msa1143020:CDS 35.0%
TGATACATTGCTAAGCACTT+TGG - chr7_4:18219575-18219594 None:intergenic 35.0%
CTTGCTGATACAATCATAAG+GGG + chr7_4:18219644-18219663 Msa1143020:CDS 35.0%
TTGCTGATACAATCATAAGG+GGG + chr7_4:18219645-18219664 Msa1143020:CDS 35.0%
GCCGATAACAAATAGTTCAA+AGG + chr7_4:18219682-18219701 Msa1143020:CDS 35.0%
TCAAAGGAAGTTATGTTCCT+AGG + chr7_4:18219698-18219717 Msa1143020:CDS 35.0%
GGTAAAAGAAAATGAGCTTG+AGG - chr7_4:18219851-18219870 None:intergenic 35.0%
CAAAAATCGTTCCTGAACTA+CGG + chr7_4:18220066-18220085 Msa1143020:intron 35.0%
ACACATATTTACTGGAAACC+TGG - chr7_4:18220206-18220225 None:intergenic 35.0%
GTTTAGCAGCTTTCTATGAA+GGG - chr7_4:18220248-18220267 None:intergenic 35.0%
TGTTTAGCAGCTTTCTATGA+AGG - chr7_4:18220249-18220268 None:intergenic 35.0%
TAATAGCACAAGAGAGATGA+GGG - chr7_4:18220396-18220415 None:intergenic 35.0%
TTAATAGCACAAGAGAGATG+AGG - chr7_4:18220397-18220416 None:intergenic 35.0%
TATATGCCAACCATTAAGAG+TGG - chr7_4:18220504-18220523 None:intergenic 35.0%
!! GAGCTATAGAAGCATTGATA+AGG - chr7_4:18220586-18220605 None:intergenic 35.0%
TAGTAGAATCTTGTCCTATG+CGG - chr7_4:18220628-18220647 None:intergenic 35.0%
!!! TGTTGGATAGGTGGTTTTAT+GGG - chr7_4:18220716-18220735 None:intergenic 35.0%
!! ATGTTGGATAGGTGGTTTTA+TGG - chr7_4:18220717-18220736 None:intergenic 35.0%
AGAATGTTATGTTGGATAGG+TGG - chr7_4:18220725-18220744 None:intergenic 35.0%
! TCTTTTCTACTTGAACCCTA+TGG + chr7_4:18220904-18220923 Msa1143020:intron 35.0%
ACATTTGTGATTCCCAACAA+TGG - chr7_4:18220933-18220952 None:intergenic 35.0%
ACTTTCACTTTCATCAATGG+TGG - chr7_4:18220980-18220999 None:intergenic 35.0%
AATTTGTGGCATCGTTTCAA+AGG - chr7_4:18221048-18221067 None:intergenic 35.0%
!!! TCTATAGTTTTGGTCCTAAG+AGG + chr7_4:18221068-18221087 Msa1143020:intron 35.0%
TCTATACACAGACTACATAG+AGG - chr7_4:18221097-18221116 None:intergenic 35.0%
ACCTTCTTTCTCTATCAAGA+AGG + chr7_4:18221383-18221402 Msa1143020:intron 35.0%
CTATTGTTATGTATGAGGGA+TGG + chr7_4:18221414-18221433 Msa1143020:intron 35.0%
TAACATACAACTCCCATTGT+AGG + chr7_4:18221522-18221541 Msa1143020:intron 35.0%
AACATACAACTCCCATTGTA+GGG + chr7_4:18221523-18221542 Msa1143020:intron 35.0%
TCCTAGTAACTTCACATTGA+AGG + chr7_4:18221547-18221566 Msa1143020:intron 35.0%
TCCTTCAATGTGAAGTTACT+AGG - chr7_4:18221551-18221570 None:intergenic 35.0%
AGTACGTCCCTTCATAATTT+AGG + chr7_4:18221723-18221742 Msa1143020:intron 35.0%
! AATGACTATCTTTTCCCTAG+AGG + chr7_4:18221841-18221860 Msa1143020:intron 35.0%
GTTGATGTCTTTATCTGAAG+AGG + chr7_4:18222050-18222069 Msa1143020:intron 35.0%
CAAAGATACACTATCACTAG+TGG - chr7_4:18222233-18222252 None:intergenic 35.0%
CTAAGCATGGCATACATAAA+AGG - chr7_4:18222459-18222478 None:intergenic 35.0%
AAAGAACAAAGCATGTGTCA+AGG + chr7_4:18222509-18222528 Msa1143020:intron 35.0%
AAGAACAAAGCATGTGTCAA+GGG + chr7_4:18222510-18222529 Msa1143020:intron 35.0%
TGAGTAATAGAGACATCATG+CGG - chr7_4:18222735-18222754 None:intergenic 35.0%
! GATATTGTCTTTGTTTCAGG+TGG + chr7_4:18222925-18222944 Msa1143020:intron 35.0%
GTTTGATTAAGTTCACGATG+TGG - chr7_4:18222982-18223001 None:intergenic 35.0%
! TTTTGTATTTCTCTCCAACG+CGG - chr7_4:18223038-18223057 None:intergenic 35.0%
ATCTGCAGGTTAGATAGAAA+TGG + chr7_4:18223288-18223307 Msa1143020:exon 35.0%
CTTTGACATTCACTTCCTAT+AGG + chr7_4:18223410-18223429 Msa1143020:three_prime_UTR 35.0%
TCACTTCCTATAGGAATTGA+AGG + chr7_4:18223419-18223438 Msa1143020:three_prime_UTR 35.0%
AAAATGCACTAGTTAGGCTT+TGG - chr7_4:18223490-18223509 None:intergenic 35.0%
! TGGGTTGAAAAGAGAGAGAA+AGG - chr7_4:18218258-18218277 None:intergenic 40.0%
! TTTGAGATCAGAAACAGTGG+TGG - chr7_4:18218357-18218376 None:intergenic 40.0%
! ACGATTCTCAGAACCTTTTG+AGG - chr7_4:18218658-18218677 None:intergenic 40.0%
!!! TTTTTGAGGTTGCAACACCA+TGG - chr7_4:18218704-18218723 None:intergenic 40.0%
TCTTCTTTGAATGCAGGACA+AGG + chr7_4:18218777-18218796 Msa1143020:CDS 40.0%
CAAGGACAGTTTCATAGTCA+TGG + chr7_4:18218795-18218814 Msa1143020:CDS 40.0%
!! AAGCTCGGTTTTTCGGAATT+CGG - chr7_4:18218903-18218922 None:intergenic 40.0%
TGACCCTACTAAGCATCTTA+AGG + chr7_4:18218968-18218987 Msa1143020:CDS 40.0%
GGAGATTAAGAGACAAGCTT+TGG + chr7_4:18218995-18219014 Msa1143020:CDS 40.0%
TCAATGAGCTTATTCTCACG+CGG - chr7_4:18219131-18219150 None:intergenic 40.0%
CGTGAGAATAAGCTCATTGA+TGG + chr7_4:18219131-18219150 Msa1143020:CDS 40.0%
!! CATTGATGGCGTTGAATTAG+AGG + chr7_4:18219145-18219164 Msa1143020:CDS 40.0%
!! CTCTCTTTCTCTAGGATCTT+CGG - chr7_4:18219324-18219343 None:intergenic 40.0%
ATGTCTTTGCATCGGATCTA+TGG + chr7_4:18219353-18219372 Msa1143020:CDS 40.0%
TCGGATCTATGGCAAGTTAA+TGG + chr7_4:18219364-18219383 Msa1143020:CDS 40.0%
!! AAGCACTTTGGTTTGTGCAA+CGG - chr7_4:18219563-18219582 None:intergenic 40.0%
TAAGGGGGTTATTGAAGTAC+TGG + chr7_4:18219660-18219679 Msa1143020:CDS 40.0%
AGTTATGTTCCTAGGTGAGT+TGG + chr7_4:18219706-18219725 Msa1143020:CDS 40.0%
! TTTGAATAGCCCCCATTTTC+AGG + chr7_4:18219805-18219824 Msa1143020:CDS 40.0%
GATTATATGCAACAAGTCCC+TGG + chr7_4:18220097-18220116 Msa1143020:intron 40.0%
AGAAAGCTGCTAAACATGCT+AGG + chr7_4:18220253-18220272 Msa1143020:intron 40.0%
ATCTTGATGCAAGCTTAAGG+TGG + chr7_4:18220354-18220373 Msa1143020:intron 40.0%
AATAGCACAAGAGAGATGAG+GGG - chr7_4:18220395-18220414 None:intergenic 40.0%
! AAGCTTATGGTCTTAGGAGA+TGG + chr7_4:18220445-18220464 Msa1143020:intron 40.0%
!! ACCTCTGAAACCACTCTTAA+TGG + chr7_4:18220491-18220510 Msa1143020:intron 40.0%
ACCATTAAGAGTGGTTTCAG+AGG - chr7_4:18220495-18220514 None:intergenic 40.0%
CTGAAACCACTCTTAATGGT+TGG + chr7_4:18220495-18220514 Msa1143020:intron 40.0%
GGTTGGCATATAGTTCTTCT+TGG + chr7_4:18220512-18220531 Msa1143020:intron 40.0%
!!! GTTGGATAGGTGGTTTTATG+GGG - chr7_4:18220715-18220734 None:intergenic 40.0%
GTTGTACGTGAGTGAATGTT+GGG - chr7_4:18220790-18220809 None:intergenic 40.0%
TGTTGTACGTGAGTGAATGT+TGG - chr7_4:18220791-18220810 None:intergenic 40.0%
AACCCTATGGTTTCCATTGT+TGG + chr7_4:18220917-18220936 Msa1143020:intron 40.0%
ACCCTATGGTTTCCATTGTT+GGG + chr7_4:18220918-18220937 Msa1143020:intron 40.0%
TCCCAACAATGGAAACCATA+GGG - chr7_4:18220922-18220941 None:intergenic 40.0%
TTCCCAACAATGGAAACCAT+AGG - chr7_4:18220923-18220942 None:intergenic 40.0%
GTCTGTGTATAGACTTTCCT+TGG + chr7_4:18221104-18221123 Msa1143020:intron 40.0%
! CTTACTGTTTTGTGTCTGCT+TGG - chr7_4:18221315-18221334 None:intergenic 40.0%
CATATGGACTCATTTCAGCA+TGG + chr7_4:18221349-18221368 Msa1143020:intron 40.0%
GCCTTCTTGATAGAGAAAGA+AGG - chr7_4:18221387-18221406 None:intergenic 40.0%
GTTACTAGGATCCCTACAAT+GGG - chr7_4:18221537-18221556 None:intergenic 40.0%
AGTTACTAGGATCCCTACAA+TGG - chr7_4:18221538-18221557 None:intergenic 40.0%
CGTCCCTTCATAATTTAGGA+AGG + chr7_4:18221727-18221746 Msa1143020:intron 40.0%
TTTGTAAGCTTGTGGCTTGA+AGG + chr7_4:18221773-18221792 Msa1143020:intron 40.0%
CATAAGATCAGCTTCCTCTA+GGG - chr7_4:18221858-18221877 None:intergenic 40.0%
ACATAAGATCAGCTTCCTCT+AGG - chr7_4:18221859-18221878 None:intergenic 40.0%
GCTGATCTTATGTTCATCTG+AGG + chr7_4:18221866-18221885 Msa1143020:intron 40.0%
!! TGCCGACTTTCTGTTCATTA+TGG + chr7_4:18221925-18221944 Msa1143020:intron 40.0%
GGCCATAATGAACAGAAAGT+CGG - chr7_4:18221930-18221949 None:intergenic 40.0%
GTCTTTATCTGAAGAGGTGA+AGG + chr7_4:18222056-18222075 Msa1143020:intron 40.0%
GGGATCGTAAAAACTAAGCA+TGG - chr7_4:18222472-18222491 None:intergenic 40.0%
!! TCTAGAAGTGTTTGCATGAC+TGG + chr7_4:18222554-18222573 Msa1143020:intron 40.0%
CTACTGCAATTTGCAAGACT+TGG + chr7_4:18222699-18222718 Msa1143020:intron 40.0%
! ATTGTCTTTGTTTCAGGTGG+CGG + chr7_4:18222928-18222947 Msa1143020:intron 40.0%
TTTGTATTTCTCTCCAACGC+GGG - chr7_4:18223037-18223056 None:intergenic 40.0%
GTTTGAGCAAGACGAATCAA+AGG + chr7_4:18223153-18223172 Msa1143020:CDS 40.0%
GTTACTTGCAGCTTTCTTTG+CGG - chr7_4:18223233-18223252 None:intergenic 40.0%
!!! TTTTTTGGCATGTGATGGGT+TGG + chr7_4:18223363-18223382 Msa1143020:three_prime_UTR 40.0%
!! GGTTCTGAGAATCGTGAACA+AGG + chr7_4:18218663-18218682 Msa1143020:CDS 45.0%
TCTGAGAATCGTGAACAAGG+TGG + chr7_4:18218666-18218685 Msa1143020:CDS 45.0%
GGTGGAAATTCAAGAAGCCA+TGG + chr7_4:18218684-18218703 Msa1143020:CDS 45.0%
AGTGATGTTGCTACACAACC+TGG + chr7_4:18218726-18218745 Msa1143020:CDS 45.0%
GTGATGTTGCTACACAACCT+GGG + chr7_4:18218727-18218746 Msa1143020:CDS 45.0%
! TTACCAGTTTTGCTACTCCC+AGG - chr7_4:18218747-18218766 None:intergenic 45.0%
TTCGGAACATCCCTAAATGC+TGG - chr7_4:18218885-18218904 None:intergenic 45.0%
! TGATGGCGTTGAATTAGAGG+AGG + chr7_4:18219148-18219167 Msa1143020:CDS 45.0%
ATTTGCAAATGAGGCCACGA+AGG - chr7_4:18219191-18219210 None:intergenic 45.0%
! ATTTGTTGCATCACCTGAGC+TGG + chr7_4:18219232-18219251 Msa1143020:CDS 45.0%
! TATGTTCCTAGGTGAGTTGG+AGG + chr7_4:18219709-18219728 Msa1143020:CDS 45.0%
ATACATCGCTGGAATTCTGG+AGG - chr7_4:18219755-18219774 None:intergenic 45.0%
TCCAGAATTCCAGCGATGTA+TGG + chr7_4:18219754-18219773 Msa1143020:CDS 45.0%
ACCATACATCGCTGGAATTC+TGG - chr7_4:18219758-18219777 None:intergenic 45.0%
ACAATAGCACCATACATCGC+TGG - chr7_4:18219766-18219785 None:intergenic 45.0%
GCAGTGTTCTTGCCAAGAAA+AGG + chr7_4:18219965-18219984 Msa1143020:intron 45.0%
ATCAAGCAAGTCCGTAGTTC+AGG - chr7_4:18220080-18220099 None:intergenic 45.0%
! AAGGAGTACAGTCAGATTCC+AGG + chr7_4:18220185-18220204 Msa1143020:intron 45.0%
! TCAAACACCTTTTGCAGGCA+GGG - chr7_4:18220312-18220331 None:intergenic 45.0%
! TTCAAACACCTTTTGCAGGC+AGG - chr7_4:18220313-18220332 None:intergenic 45.0%
ATGCAAGCTTAAGGTGGTGA+GGG + chr7_4:18220360-18220379 Msa1143020:intron 45.0%
ATAGCACAAGAGAGATGAGG+GGG - chr7_4:18220394-18220413 None:intergenic 45.0%
AATCTTGTCCTATGCGGTCT+GGG - chr7_4:18220622-18220641 None:intergenic 45.0%
CTACATAGAGGCTTCCTCTT+AGG - chr7_4:18221085-18221104 None:intergenic 45.0%
ACCCTACTGCTTTCTGACTT+AGG + chr7_4:18221228-18221247 Msa1143020:intron 45.0%
CCCTAAGTCAGAAAGCAGTA+GGG - chr7_4:18221232-18221251 None:intergenic 45.0%
CCCTACTGCTTTCTGACTTA+GGG + chr7_4:18221229-18221248 Msa1143020:intron 45.0%
ACCCTAAGTCAGAAAGCAGT+AGG - chr7_4:18221233-18221252 None:intergenic 45.0%
TTGTGTCTGCTTGGTCATCA+AGG - chr7_4:18221306-18221325 None:intergenic 45.0%
ACATGCAAAAAGTCGTGCAG+AGG - chr7_4:18221451-18221470 None:intergenic 45.0%
CAAAGCATGTGTCAAGGGAT+TGG + chr7_4:18222515-18222534 Msa1143020:intron 45.0%
! GGCTTTTATTGGCCCAAAGT+TGG - chr7_4:18222819-18222838 None:intergenic 45.0%
!! CGGAAAGAGCTTTGTTCTTG+TGG + chr7_4:18222948-18222967 Msa1143020:CDS 45.0%
GAGCAAGACGAATCAAAGGA+AGG + chr7_4:18223157-18223176 Msa1143020:CDS 45.0%
ATCTAACCTGCAGATTTGCG+AGG - chr7_4:18223283-18223302 None:intergenic 45.0%
GAGATCAGAAACAGTGGTGG+TGG - chr7_4:18218354-18218373 None:intergenic 50.0%
CAACCTGGGAGTAGCAAAAC+TGG + chr7_4:18218741-18218760 Msa1143020:CDS 50.0%
AGCTTATTCTCACGCGGTTG+AGG - chr7_4:18219125-18219144 None:intergenic 50.0%
! TGGCGTTGAATTAGAGGAGG+AGG + chr7_4:18219151-18219170 Msa1143020:CDS 50.0%
ACCTGAGCTGGATGCAAAGT+TGG + chr7_4:18219244-18219263 Msa1143020:CDS 50.0%
AGACTTCCTCCAACTCACCT+AGG - chr7_4:18219718-18219737 None:intergenic 50.0%
! AGGTGAGTTGGAGGAAGTCT+TGG + chr7_4:18219718-18219737 Msa1143020:CDS 50.0%
! CAGGCAGGGTTTGGAGTAAA+AGG - chr7_4:18220298-18220317 None:intergenic 50.0%
GATGCAAGCTTAAGGTGGTG+AGG + chr7_4:18220359-18220378 Msa1143020:intron 50.0%
GAATCTTGTCCTATGCGGTC+TGG - chr7_4:18220623-18220642 None:intergenic 50.0%
AACACAGCGAAACTGCTCCA+AGG - chr7_4:18221124-18221143 None:intergenic 50.0%
TTTCCTGACCTGGAGTGTGT+CGG - chr7_4:18221152-18221171 None:intergenic 50.0%
TCCAGGTCAGGAAACAGTCA+GGG + chr7_4:18221158-18221177 Msa1143020:intron 50.0%
TCCAGTTCCTTCGTGACCAA+TGG + chr7_4:18222867-18222886 Msa1143020:intron 50.0%
TCCATTGGTCACGAAGGAAC+TGG - chr7_4:18222871-18222890 None:intergenic 50.0%
CATTGCAACTGCAGCTCCAT+TGG - chr7_4:18222886-18222905 None:intergenic 50.0%
TCCAACGCGGGAAAGATGAT+GGG - chr7_4:18223025-18223044 None:intergenic 50.0%
AAGGAAGGTGAAGTGACAGC+AGG + chr7_4:18223172-18223191 Msa1143020:CDS 50.0%
AGGAAGGTGAAGTGACAGCA+GGG + chr7_4:18223173-18223192 Msa1143020:CDS 50.0%
!! TGTGATGGGTTGGCCAAGAA+AGG + chr7_4:18223373-18223392 Msa1143020:three_prime_UTR 50.0%
AGCCTTCGATGGATCCTTCG+TGG + chr7_4:18219174-18219193 Msa1143020:CDS 55.0%
GCCAACTTTGCATCCAGCTC+AGG - chr7_4:18219248-18219267 None:intergenic 55.0%
! TGGCGCATCGACCTTTCATC+AGG + chr7_4:18219384-18219403 Msa1143020:CDS 55.0%
CTCCAAACCCTGCCTGCAAA+AGG + chr7_4:18220302-18220321 Msa1143020:intron 55.0%
! CACCTTTTGCAGGCAGGGTT+TGG - chr7_4:18220307-18220326 None:intergenic 55.0%
AGCTTAAGGTGGTGAGGGTG+AGG + chr7_4:18220365-18220384 Msa1143020:intron 55.0%
GCTTAAGGTGGTGAGGGTGA+GGG + chr7_4:18220366-18220385 Msa1143020:intron 55.0%
CATTTGTGCCCAGACCGCAT+AGG + chr7_4:18220611-18220630 Msa1143020:intron 55.0%
CTCCAGGTCAGGAAACAGTC+AGG + chr7_4:18221157-18221176 Msa1143020:intron 55.0%
TGCAGCTCCATTGGTCACGA+AGG - chr7_4:18222877-18222896 None:intergenic 55.0%
TCCCATCATCTTTCCCGCGT+TGG + chr7_4:18223021-18223040 Msa1143020:CDS 55.0%
CTCCAACGCGGGAAAGATGA+TGG - chr7_4:18223026-18223045 None:intergenic 55.0%
CGAAGCCACATGGAAACGCT+TGG + chr7_4:18223198-18223217 Msa1143020:CDS 55.0%
AGCCACATGGAAACGCTTGG+AGG + chr7_4:18223201-18223220 Msa1143020:CDS 55.0%
CTCCTCCAAGCGTTTCCATG+TGG - chr7_4:18223206-18223225 None:intergenic 55.0%
CACATGGAAACGCTTGGAGG+AGG + chr7_4:18223204-18223223 Msa1143020:CDS 55.0%
GCACTACCTCGCAAATCTGC+AGG + chr7_4:18223274-18223293 Msa1143020:CDS 55.0%
AGAGGAGGAGGAGCCTTCGA+TGG + chr7_4:18219163-18219182 Msa1143020:CDS 60.0%
GGCCACGAAGGATCCATCGA+AGG - chr7_4:18219179-18219198 None:intergenic 60.0%
GTTAGCTGCCGACACACTCC+AGG + chr7_4:18221141-18221160 Msa1143020:intron 60.0%
GCCCTGACTGTTTCCTGACC+TGG - chr7_4:18221162-18221181 None:intergenic 60.0%
CTGCCGACACACTCCAGGTC+AGG + chr7_4:18221146-18221165 Msa1143020:intron 65.0%
CAGCAGGGCGCGAAGCCACA+TGG + chr7_4:18223188-18223207 Msa1143020:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 18218224 18223568 18218224 ID=Msa1143020;Name=Msa1143020
chr7_4 mRNA 18218224 18223568 18218224 ID=Msa1143020-mRNA-1;Parent=Msa1143020;Name=Msa1143020-mRNA-1;_AED=0.02;_eAED=0.02;_QI=394|1|1|1|1|1|2|268|521
chr7_4 exon 18218224 18219826 18218224 ID=Msa1143020-mRNA-1:exon:3994;Parent=Msa1143020-mRNA-1
chr7_4 exon 18222944 18223568 18222944 ID=Msa1143020-mRNA-1:exon:3995;Parent=Msa1143020-mRNA-1
chr7_4 five_prime_UTR 18218224 18218617 18218224 ID=Msa1143020-mRNA-1:five_prime_utr;Parent=Msa1143020-mRNA-1
chr7_4 CDS 18218618 18219826 18218618 ID=Msa1143020-mRNA-1:cds;Parent=Msa1143020-mRNA-1
chr7_4 CDS 18222944 18223300 18222944 ID=Msa1143020-mRNA-1:cds;Parent=Msa1143020-mRNA-1
chr7_4 three_prime_UTR 18223301 18223568 18223301 ID=Msa1143020-mRNA-1:three_prime_utr;Parent=Msa1143020-mRNA-1
Gene Sequence

>Msa1143020

ATGTTCAAAAAGGTATTTGGTAAAATTCCTAAAAAGTCCTCAAAAGGTTCTGAGAATCGTGAACAAGGTGGAAATTCAAGAAGCCATGGTGTTGCAACCTCAAAAAACAGTGATGTTGCTACACAACCTGGGAGTAGCAAAACTGGTAATTCTTCTAATTCTTCTTTGAATGCAGGACAAGGACAGTTTCATAGTCATGGTAACAAATCTTCATTACCTATGAATGAGAATTCCAATGGTAATTTTAATTCTTATGAAGCTTTACCAGCATTTAGGGATGTTCCGAATTCCGAAAAACCGAGCTTGTTTATAAAAAAGCTTAAGATGTGTAGTGTTGTTTTTGACTTCACTGACCCTACTAAGCATCTTAAGGAAAAGGAGATTAAGAGACAAGCTTTGGTTGAGCTTGTTGATTATGTGTCTTCTGTTAATGCTAAATTTACTGAGAATGTAATGCAAGAGGTTGTTAAGATGGTGTCTGTAAATATATTCAGAACACTAAGTCCTCAACCGCGTGAGAATAAGCTCATTGATGGCGTTGAATTAGAGGAGGAGGAGCCTTCGATGGATCCTTCGTGGCCTCATTTGCAAATTGTTTATGAGCTTTTTCTTAGATTTGTTGCATCACCTGAGCTGGATGCAAAGTTGGCTAAGAGATTCATTGATCAATCGTTTATTTTGAGGCTGCTTGATTTGTTTGACTCCGAAGATCCTAGAGAAAGAGAGTATTTGAAAATGTCTTTGCATCGGATCTATGGCAAGTTAATGGCGCATCGACCTTTCATCAGGAAATCAATCAATAACATCTTTTTGAACTTTGTTTTTGAGACTGAGAAGCATAATGGAATTGCTGAGTTTTTGGAAATTCTGGGGAGTATCATTAATGGTTTTGCATTGCCATTGAAAGAAGAGCATAAATTGTTTCTGGTTCGAATATTGATTCCGTTGCACAAACCAAAGTGCTTAGCAATGTATCATCAGCAGTTATCTTATTGCATTACTCAGTTTGTGGAGAAAGACTGCAAACTTGCTGATACAATCATAAGGGGGTTATTGAAGTACTGGCCGATAACAAATAGTTCAAAGGAAGTTATGTTCCTAGGTGAGTTGGAGGAAGTCTTGGAAGCAACTCAACCTCCAGAATTCCAGCGATGTATGGTGCTATTGTTTCGCCGTGTTTCTCATTGTTTGAATAGCCCCCATTTTCAGGTGGCGGAAAGAGCTTTGTTCTTGTGGAATAACGACCACATCGTGAACTTAATCAAACAAAACTGCAAAGTGATACTTCCCATCATCTTTCCCGCGTTGGAGAGAAATACAAAAACTCATTGGAATCAAGCTGTCCATAGTTTGACTTTAAATGTTCAGAAGATTTTTCACGATCTCGATCTCGATCTGTACAAAGAATGTTTACAAAAGTTTGAGCAAGACGAATCAAAGGAAGGTGAAGTGACAGCAGGGCGCGAAGCCACATGGAAACGCTTGGAGGAGGTTGCCGCAAAGAAAGCTGCAAGTAACGAAGCTGTGCTTATTAGTAAAGCACTACCTCGCAAATCTGCAGGTTAG

Protein sequence

>Msa1143020

MFKKVFGKIPKKSSKGSENREQGGNSRSHGVATSKNSDVATQPGSSKTGNSSNSSLNAGQGQFHSHGNKSSLPMNENSNGNFNSYEALPAFRDVPNSEKPSLFIKKLKMCSVVFDFTDPTKHLKEKEIKRQALVELVDYVSSVNAKFTENVMQEVVKMVSVNIFRTLSPQPRENKLIDGVELEEEEPSMDPSWPHLQIVYELFLRFVASPELDAKLAKRFIDQSFILRLLDLFDSEDPREREYLKMSLHRIYGKLMAHRPFIRKSINNIFLNFVFETEKHNGIAEFLEILGSIINGFALPLKEEHKLFLVRILIPLHKPKCLAMYHQQLSYCITQFVEKDCKLADTIIRGLLKYWPITNSSKEVMFLGELEEVLEATQPPEFQRCMVLLFRRVSHCLNSPHFQVAERALFLWNNDHIVNLIKQNCKVILPIIFPALERNTKTHWNQAVHSLTLNVQKIFHDLDLDLYKECLQKFEQDESKEGEVTAGREATWKRLEEVAAKKAASNEAVLISKALPRKSAG*