AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0064110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0064110 MtrunA17_Chr1g0165771 93.103 928 35 3 1 928 1 899 0.0 1696
Msa0064110 MtrunA17_Chr4g0021051 61.680 976 230 14 11 928 23 912 0.0 1036
Msa0064110 MtrunA17_Chr3g0142991 62.270 652 136 13 15 664 14 557 0.0 664
Msa0064110 MtrunA17_Chr3g0143181 57.884 482 133 13 9 489 7 419 1.15e-137 418
Msa0064110 MtrunA17_Chr3g0143201 71.685 279 48 2 666 913 13 291 2.38e-127 387
Msa0064110 MtrunA17_Chr3g0143131 54.183 502 144 14 9 489 7 443 5.88e-126 389
Msa0064110 MtrunA17_Chr3g0143091 69.919 246 42 2 666 907 52 269 2.46e-108 335
Msa0064110 MtrunA17_Chr3g0143191 79.545 176 36 0 489 664 3 178 1.69e-91 287
Msa0064110 MtrunA17_Chr3g0143001 69.767 172 37 1 666 822 33 204 2.59e-73 240
Msa0064110 MtrunA17_Chr3g0143111 81.132 53 10 0 519 571 9 61 9.46e-26 102
Msa0064110 MtrunA17_Chr3g0143101 88.636 44 5 0 621 664 2 45 6.42e-18 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0064110 AT5G55310.1 57.369 821 264 14 149 928 136 911 0.0 867
Msa0064110 AT5G55300.1 58.314 842 279 16 127 928 104 913 0.0 863
Msa0064110 AT5G55300.2 58.284 839 278 16 127 925 104 910 0.0 856
Msa0064110 AT5G55300.3 71.591 264 70 1 670 928 298 561 4.67e-126 393
Msa0064110 AT4G26701.1 85.294 68 10 0 861 928 2 69 3.46e-35 128

Find 240 sgRNAs with CRISPR-Local

Find 609 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATTCAAATACGTGTTTC+TGG 0.158393 1_2:+25073296 Msa0064110:CDS
GCTACAGAATAATAATAATT+TGG 0.158467 1_2:+25069915 Msa0064110:CDS
AATTGTTCATTTAACTAATC+TGG 0.187536 1_2:+25076380 Msa0064110:three_prime_UTR
ATTTAACCCATTGTCTATTC+TGG 0.203141 1_2:-25071837 None:intergenic
TTTGTATGTCTTCATCTTAT+AGG 0.217698 1_2:-25076244 None:intergenic
TGGCATGCTTATTCATTCTT+TGG 0.234370 1_2:-25070215 None:intergenic
AGAATTATATAGAGAGAATT+AGG 0.239346 1_2:+25073496 Msa0064110:intron
ATCATTCACTTTGGATGATA+TGG 0.241509 1_2:+25074589 Msa0064110:CDS
AATAGACAATGGGTTAAATT+TGG 0.243652 1_2:+25071841 Msa0064110:CDS
ATCCCTGTCCCCTTTCTTCA+TGG 0.254289 1_2:+25076411 Msa0064110:three_prime_UTR
GACTGACTGGAAGGTGATAT+TGG 0.273127 1_2:+25071058 Msa0064110:CDS
TCGGAGGAGGGAAGGGAGTT+GGG 0.275437 1_2:-25067731 None:intergenic
AGTTCAAAATTTGCGTCATT+TGG 0.285153 1_2:+25069607 Msa0064110:CDS
TTGAATAACTTATTATTGAT+TGG 0.287792 1_2:-25073282 None:intergenic
CAAAATTCAAGGAAAACTTT+TGG 0.292105 1_2:+25071036 Msa0064110:CDS
TTCTGGGAGCTAGTAGTTCT+TGG 0.297922 1_2:+25073313 Msa0064110:CDS
AACCCTACCTCCTCTTGTTC+AGG 0.307792 1_2:-25070504 None:intergenic
TATATAGATGTTAGATAATC+AGG 0.312545 1_2:+25067647 Msa0064110:five_prime_UTR
CAGATGATTTGATGAAGTTC+AGG 0.333592 1_2:-25067680 None:intergenic
TTATCTAGTGGTCTCTTAAC+AGG 0.340703 1_2:-25070054 None:intergenic
TCACCAGGAATAGGACATTC+AGG 0.342349 1_2:-25073090 None:intergenic
AAATCATGTGATTCAGAATC+TGG 0.343166 1_2:+25071085 Msa0064110:CDS
TGGGGTAAAGATGCTCTATA+AGG 0.344361 1_2:+25070461 Msa0064110:CDS
GGCATGCTTATTCATTCTTT+GGG 0.347185 1_2:-25070214 None:intergenic
CCATTTGCAGAAGGCACGTC+AGG 0.348723 1_2:-25069448 None:intergenic
AGTGATGTCGTAATTAATAT+TGG 0.351510 1_2:+25073051 Msa0064110:CDS
TCCTTGGTAAAGATTCTATC+AGG 0.354466 1_2:+25074315 Msa0064110:CDS
ATTGTTATTGTTATTATGTA+TGG 0.358468 1_2:+25076528 Msa0064110:three_prime_UTR
GGCTTGTGGTAAATTAAATA+TGG 0.359173 1_2:+25069294 Msa0064110:exon
CGGAGGAGGGAAGGGAGTTG+GGG 0.360947 1_2:-25067730 None:intergenic
AAGTTCCGTTTGGTCTTTAG+AGG 0.361026 1_2:-25075373 None:intergenic
GTGGATAATGAGGCAAAGTT+TGG 0.363017 1_2:+25076483 Msa0064110:three_prime_UTR
TATATGACAACAGTTGAATA+AGG 0.363255 1_2:+25074931 Msa0064110:intron
CAGTTACTTGGTTGGCGTAT+TGG 0.364362 1_2:+25073253 Msa0064110:CDS
CTACAGAATAATAATAATTT+GGG 0.367356 1_2:+25069916 Msa0064110:CDS
AAAGCTGTATATTACGCTTC+AGG 0.368246 1_2:-25075400 None:intergenic
TTCAAAATGGCATTGTAAAC+AGG 0.369518 1_2:-25074365 None:intergenic
CACTGCTGGAAAAGTTTGCT+TGG 0.371389 1_2:+25076186 Msa0064110:CDS
TGAGATTTCTTGACAACAAC+AGG 0.374720 1_2:-25069808 None:intergenic
CCACAGCTATTTGTCAACTA+TGG 0.375194 1_2:-25069270 None:intergenic
TCCCGTTCATGTTCATGTTA+AGG 0.378735 1_2:+25069663 Msa0064110:CDS
CGTTCTGTGAGCTAGAACTT+TGG 0.378900 1_2:-25069471 None:intergenic
TGAATAACTTATTATTGATT+GGG 0.379082 1_2:-25073281 None:intergenic
TTTACCCCATGGGGCTTGTA+AGG 0.383102 1_2:-25070447 None:intergenic
ATTGTTCATTTAACTAATCT+GGG 0.383476 1_2:+25076381 Msa0064110:three_prime_UTR
GTCGGAGGAGGGAAGGGAGT+TGG 0.384859 1_2:-25067732 None:intergenic
GGGATCTAGGTAGTTTATCT+TGG 0.388665 1_2:-25075592 None:intergenic
TTCCACGGCAGATGCCTTAG+AGG 0.390932 1_2:-25069515 None:intergenic
AACTGTTCTGATTTATTGCC+TGG 0.391976 1_2:-25070339 None:intergenic
TGTCTCAACCTCAACCTCTA+AGG 0.400713 1_2:+25069501 Msa0064110:CDS
TATTGACAAACTAGCTTTGA+GGG 0.401248 1_2:+25073587 Msa0064110:CDS
ACCTATGTGAGGTCCCCTTC+AGG 0.407241 1_2:+25069583 Msa0064110:CDS
AAAAGTTCTTGTCTATAATC+AGG 0.410472 1_2:+25074979 Msa0064110:CDS
TTAAGGAGGAAGATAGTTCT+AGG 0.414217 1_2:+25069680 Msa0064110:CDS
GCACCAGGCAACTGATATCC+TGG 0.414673 1_2:-25075613 None:intergenic
GGAATAGGACATTCAGGAAT+TGG 0.414990 1_2:-25073084 None:intergenic
ATTCCTGAATGTCCTATTCC+TGG 0.417771 1_2:+25073087 Msa0064110:CDS
TTTGATGAAGTTCAGGTTGC+CGG 0.420700 1_2:-25067673 None:intergenic
TGAGATTGTGTGGTCGGAGG+AGG 0.422932 1_2:-25067744 None:intergenic
TTGTGTGGTCGGAGGAGGGA+AGG 0.428133 1_2:-25067739 None:intergenic
ATTTGGCACCAATCATAAAT+CGG 0.428927 1_2:-25071125 None:intergenic
TTATTCATTCTTTGGGAAAG+AGG 0.430629 1_2:-25070207 None:intergenic
AAATACCTTTCACCAGGAAT+AGG 0.432646 1_2:-25073099 None:intergenic
TCCTTAACATGAACATGAAC+GGG 0.432745 1_2:-25069664 None:intergenic
CCTGACGTGCCTTCTGCAAA+TGG 0.434901 1_2:+25069448 Msa0064110:CDS
TGAACCGAAGGTTGCGGAGG+TGG 0.437744 1_2:+25070164 Msa0064110:CDS
TTCAGGAGCCAAGTTCCGTT+TGG 0.438748 1_2:-25075383 None:intergenic
TTATTCAAATACGTGTTTCT+GGG 0.442275 1_2:+25073297 Msa0064110:CDS
TGAAAAGATTGATGAACTTA+AGG 0.443289 1_2:+25075174 Msa0064110:CDS
ACTTTACACCGATTTATGAT+TGG 0.443998 1_2:+25071117 Msa0064110:CDS
ATTCAATGCATCATTCACTT+TGG 0.446415 1_2:+25074580 Msa0064110:CDS
TCTAAAGACCAAACGGAACT+TGG 0.446555 1_2:+25075375 Msa0064110:CDS
TTCTGCCCATCACCGGAGCT+TGG 0.447038 1_2:-25070381 None:intergenic
CCTTTCTGAACATTTGAAAG+TGG 0.447386 1_2:-25069979 None:intergenic
TGTGTGGTCGGAGGAGGGAA+GGG 0.447543 1_2:-25067738 None:intergenic
GGGGTAAAGATGCTCTATAA+GGG 0.452829 1_2:+25070462 Msa0064110:CDS
TGAGAAAGCAAGGGCGTTGA+AGG 0.458385 1_2:+25073362 Msa0064110:CDS
TTAGCATTAATTGACGGAGC+TGG 0.460524 1_2:-25070123 None:intergenic
CAACTGATATCCTGGGATCT+AGG 0.463630 1_2:-25075605 None:intergenic
GGGAGCTAGTAGTTCTTGGA+AGG 0.463756 1_2:+25073317 Msa0064110:CDS
GTCTGTTTAGCATTAATTGA+CGG 0.464545 1_2:-25070129 None:intergenic
TCATCCACCTCCGCAACCTT+CGG 0.465576 1_2:-25070168 None:intergenic
TGAGATTTGTTGACAACAGC+AGG 0.466273 1_2:-25069853 None:intergenic
CTATAATCAGGCAAACAAAC+AGG 0.466715 1_2:+25074991 Msa0064110:CDS
ATCTTCAACCTAGCACTCAA+TGG 0.467359 1_2:-25069757 None:intergenic
ACTGCTGGAAAAGTTTGCTT+GGG 0.469370 1_2:+25076187 Msa0064110:CDS
TTCTTGTTTAATACCAACAT+TGG 0.470994 1_2:-25070016 None:intergenic
TATATTATCCATCTCGTCTT+CGG 0.471173 1_2:-25069734 None:intergenic
GAATTATATAGAGAGAATTA+GGG 0.478214 1_2:+25073497 Msa0064110:intron
TTAATGCAGTTTGACTTCCT+TGG 0.478589 1_2:+25074299 Msa0064110:intron
ATAATATACCATTGAGTGCT+AGG 0.479439 1_2:+25069749 Msa0064110:CDS
TTGGGGAGTAGCTGAAGAAC+AGG 0.479535 1_2:-25067713 None:intergenic
CACCTCCTTACAAGCCCCAT+GGG 0.479803 1_2:+25070442 Msa0064110:CDS
AGCTGAAAACAGATTACGAC+AGG 0.483270 1_2:+25075332 Msa0064110:CDS
CCAGGACTGTTCCGTGGACG+TGG 0.487654 1_2:+25072831 Msa0064110:CDS
GGCAGATGCCTTAGAGGTTG+AGG 0.488896 1_2:-25069509 None:intergenic
GACAAACTAGCTTTGAGGGC+TGG 0.489859 1_2:+25073591 Msa0064110:CDS
TTATTGACAAACTAGCTTTG+AGG 0.490023 1_2:+25073586 Msa0064110:CDS
GAAGGTTGTAAAATAACAAA+AGG 0.492536 1_2:-25071815 None:intergenic
TGATTGGTGCCAAATTGAAA+AGG 0.492961 1_2:+25071133 Msa0064110:CDS
TAGCATTAATTGACGGAGCT+GGG 0.493076 1_2:-25070122 None:intergenic
TTTGACAGTCCATGAAGAAA+GGG 0.497273 1_2:-25076420 None:intergenic
TTCCTCCAAGCTCCGGTGAT+GGG 0.501424 1_2:+25070376 Msa0064110:CDS
AACCTCGTGCCGCTTGCACC+AGG 0.501592 1_2:-25075628 None:intergenic
AACCTTCCAGAATAGACAAT+GGG 0.501595 1_2:+25071831 Msa0064110:CDS
ACCCTACCTCCTCTTGTTCA+GGG 0.502153 1_2:-25070503 None:intergenic
CCACCTCCTTACAAGCCCCA+TGG 0.506147 1_2:+25070441 Msa0064110:CDS
TTGAATAAGGATACTAAAGA+TGG 0.506735 1_2:+25074944 Msa0064110:CDS
ATCAGGAAAAGAAGGCCCTA+AGG 0.508963 1_2:+25072333 Msa0064110:intron
GTTTGACAGTCCATGAAGAA+AGG 0.510083 1_2:-25076421 None:intergenic
ATCCCAGGATATCAGTTGCC+TGG 0.512138 1_2:+25075610 Msa0064110:CDS
ATCTGCCGTGGAATCTTCTG+TGG 0.512707 1_2:+25069525 Msa0064110:CDS
TGTTCAGGGGTCAAAGTCAC+CGG 0.512937 1_2:-25070489 None:intergenic
TACATGTGGGCTATTGTTGA+TGG 0.514793 1_2:+25072383 Msa0064110:CDS
ATATTAATTACGACATCACT+TGG 0.514862 1_2:-25073048 None:intergenic
AGGTCTCAGAATCTGAAGTC+AGG 0.515223 1_2:-25076224 None:intergenic
GAGATTGTGTGGTCGGAGGA+GGG 0.515890 1_2:-25067743 None:intergenic
TGCCCATCACCGGAGCTTGG+AGG 0.518261 1_2:-25070378 None:intergenic
ATGGTTAAATGTGGATAATG+AGG 0.518372 1_2:+25076473 Msa0064110:three_prime_UTR
CCACGTCCACGGAACAGTCC+TGG 0.521504 1_2:-25072831 None:intergenic
CTTCCTCCAAGCTCCGGTGA+TGG 0.522085 1_2:+25070375 Msa0064110:CDS
AGTCCATGAAGAAAGGGGAC+AGG 0.522762 1_2:-25076414 None:intergenic
GACATGATAATACAGTTACT+TGG 0.523194 1_2:+25073241 Msa0064110:CDS
GCACGAGGTTCCTATTGAAA+AGG 0.523214 1_2:+25075641 Msa0064110:CDS
ACTGACTGGAAGGTGATATT+GGG 0.524562 1_2:+25071059 Msa0064110:CDS
TGTTGATGGTGTTAAAGAGA+AGG 0.524705 1_2:+25072397 Msa0064110:CDS
CACATTATATGCAGTCATGC+GGG 0.524764 1_2:+25070992 Msa0064110:CDS
ATAGAGCATCTTTACCCCAT+GGG 0.525433 1_2:-25070457 None:intergenic
ACCCCATGGGGCTTGTAAGG+AGG 0.526519 1_2:-25070444 None:intergenic
TGATAATACAGTTACTTGGT+TGG 0.529080 1_2:+25073245 Msa0064110:CDS
CCATGGGGCTTGTAAGGAGG+TGG 0.531241 1_2:-25070441 None:intergenic
CGAGGTTGAGATTGTGTGGT+CGG 0.531526 1_2:-25067750 None:intergenic
AACCCATTGTCTATTCTGGA+AGG 0.538832 1_2:-25071833 None:intergenic
CCACTTTCAAATGTTCAGAA+AGG 0.540475 1_2:+25069979 Msa0064110:CDS
ATGTCGTAATTAATATTGGA+AGG 0.545288 1_2:+25073055 Msa0064110:CDS
CACCAGGCAACTGATATCCT+GGG 0.546235 1_2:-25075612 None:intergenic
GGAAAAGTTTGCTTGGGCAA+TGG 0.546584 1_2:+25076193 Msa0064110:CDS
TTTCTTAACAGAAGAATGCA+AGG 0.546793 1_2:-25070085 None:intergenic
TTGTGCTCTTGGCAGCTGGA+AGG 0.546863 1_2:+25073212 Msa0064110:intron
CTCTTAACAGGCAGTGTAGA+CGG 0.549550 1_2:-25070042 None:intergenic
TATAGAGCATCTTTACCCCA+TGG 0.551768 1_2:-25070458 None:intergenic
CTCCTTAACATGAACATGAA+CGG 0.552075 1_2:-25069665 None:intergenic
CAGCAACATGGCTCCAATGT+TGG 0.552456 1_2:+25070003 Msa0064110:CDS
TACATTAAATAGTCATCTGA+AGG 0.554760 1_2:+25074520 Msa0064110:CDS
GACTTTGACCCCTGAACAAG+AGG 0.554890 1_2:+25070494 Msa0064110:CDS
GGTAAATTGAAAAGACGCAT+TGG 0.555799 1_2:+25073024 Msa0064110:CDS
GGAGGAGAAAATGAAACAAG+AGG 0.557340 1_2:+25072355 Msa0064110:CDS
CACGAATTTGATGATGAAGA+TGG 0.559170 1_2:+25069319 Msa0064110:CDS
ACTAAACTTCCTCCAAGCTC+CGG 0.560775 1_2:+25070369 Msa0064110:CDS
AGATGATTTATTCACTGATG+TGG 0.561330 1_2:-25070235 None:intergenic
TGAAGATTCCGAAGACGAGA+TGG 0.562000 1_2:+25069726 Msa0064110:CDS
TGAATGATGCATTGAATGTA+CGG 0.565223 1_2:-25074574 None:intergenic
CTCAATTGCATTCAGAAACA+AGG 0.566548 1_2:+25069380 Msa0064110:CDS
ATGTTAGATAATCAGGTCAC+CGG 0.567008 1_2:+25067654 Msa0064110:five_prime_UTR
AGAAGGTGACAACAAGTTGA+AGG 0.567237 1_2:+25074157 Msa0064110:CDS
CATTTGCAGAAGGCACGTCA+GGG 0.569400 1_2:-25069447 None:intergenic
GAACTTTGGCCATTTGCAGA+AGG 0.570536 1_2:-25069457 None:intergenic
ATGTTGGTATTAAACAAGAA+AGG 0.570563 1_2:+25070019 Msa0064110:CDS
TGTCACCTCTAAAGACCAAA+CGG 0.571272 1_2:+25075368 Msa0064110:CDS
ATGATATTCCTTTGTCAGCA+AGG 0.571899 1_2:+25069890 Msa0064110:CDS
TGCCTGGTGCAAGCGGCACG+AGG 0.576438 1_2:+25075626 Msa0064110:CDS
TCAGGAAAAGAAGGCCCTAA+GGG 0.578782 1_2:+25072334 Msa0064110:intron
GTAGAAAATGTGACTGCAGA+AGG 0.580405 1_2:+25074140 Msa0064110:CDS
GAAATCTGAACCGAAGGTTG+CGG 0.580628 1_2:+25070158 Msa0064110:CDS
AGGAAAAGTATGAGAAAGCA+AGG 0.580780 1_2:+25073352 Msa0064110:CDS
AACCTCTAAGGCATCTGCCG+TGG 0.583051 1_2:+25069513 Msa0064110:CDS
AATGTCCTATTCCTGGTGAA+AGG 0.583669 1_2:+25073094 Msa0064110:CDS
GTGAAAACCATGGTTAAATG+TGG 0.584352 1_2:+25076464 Msa0064110:three_prime_UTR
TCATTATCCACATTTAACCA+TGG 0.588062 1_2:-25076471 None:intergenic
GATGAGTGAGGAAGAGAACG+AGG 0.588596 1_2:-25067768 None:intergenic
ATCGGTGAAATCTGAACCGA+AGG 0.590409 1_2:+25070152 Msa0064110:CDS
ATCTGAACCGAAGGTTGCGG+AGG 0.591598 1_2:+25070161 Msa0064110:CDS
AGATAAACTACCTAGATCCC+AGG 0.592465 1_2:+25075595 Msa0064110:CDS
TGGGATGCTCTCCACGTCCA+CGG 0.594039 1_2:-25072842 None:intergenic
GATAGAGATGAAGATGAGTG+AGG 0.594540 1_2:-25067780 None:intergenic
TATCAGTTGCCTGGTGCAAG+CGG 0.597542 1_2:+25075619 Msa0064110:CDS
CAACCTTCCAGAATAGACAA+TGG 0.597885 1_2:+25071830 Msa0064110:CDS
CATACAAATACAATTATGCA+AGG 0.599976 1_2:+25076259 Msa0064110:three_prime_UTR
GATGCTCTATAAGGGGAAGC+CGG 0.601756 1_2:+25070470 Msa0064110:CDS
TTTGAGGGCTGGCAATGAGA+AGG 0.602681 1_2:+25073602 Msa0064110:CDS
CGTTCATGTTCATGTTAAGG+AGG 0.603003 1_2:+25069666 Msa0064110:CDS
ATTATTTAACGTGAAAACCA+TGG 0.605404 1_2:+25076454 Msa0064110:three_prime_UTR
GTATGAAAATACAGTTGAGG+TGG 0.606610 1_2:+25074337 Msa0064110:CDS
GTAATTGTAGGCTCTTTCGA+AGG 0.610961 1_2:+25075309 Msa0064110:intron
TGTAGCCGCCTTGCTGACAA+AGG 0.611232 1_2:-25069898 None:intergenic
GCTGAAGAACAGGTGTGGCA+CGG 0.612422 1_2:-25067703 None:intergenic
GGGTAAAGATGCTCTATAAG+GGG 0.613483 1_2:+25070463 Msa0064110:CDS
TCCTGAAGGGGACCTCACAT+AGG 0.613650 1_2:-25069584 None:intergenic
GTCCATGAAGAAAGGGGACA+GGG 0.615243 1_2:-25076413 None:intergenic
AACAGTAAATACCTTTCACC+AGG 0.615831 1_2:-25073105 None:intergenic
TGGACTACTTTGGTTCACAA+TGG 0.616634 1_2:+25070408 Msa0064110:CDS
TAGTTGACAAATAGCTGTGG+AGG 0.616997 1_2:+25069273 Msa0064110:five_prime_UTR
AAATCTAGTAATAACAATGG+TGG 0.618035 1_2:+25069940 Msa0064110:CDS
CCACATTATATGCAGTCATG+CGG 0.618794 1_2:+25070991 Msa0064110:CDS
AATTAATGCTAAACAGACAT+CGG 0.620417 1_2:+25070134 Msa0064110:CDS
TTGTTCATTTAACTAATCTG+GGG 0.621104 1_2:+25076382 Msa0064110:three_prime_UTR
CCGCATGACTGCATATAATG+TGG 0.622713 1_2:-25070991 None:intergenic
TCTGCCGTGGAATCTTCTGT+GGG 0.622872 1_2:+25069526 Msa0064110:CDS
GTTCAGAAAGGACAGCAACA+TGG 0.631048 1_2:+25069991 Msa0064110:CDS
TAGAGCATCTTTACCCCATG+GGG 0.631056 1_2:-25070456 None:intergenic
TGTCGTAATTAATATTGGAA+GGG 0.631715 1_2:+25073056 Msa0064110:CDS
CCCTACCTCCTCTTGTTCAG+GGG 0.632769 1_2:-25070502 None:intergenic
TATACCCACAGAAGATTCCA+CGG 0.633738 1_2:-25069530 None:intergenic
GGAGCTAGTAGTTCTTGGAA+GGG 0.634366 1_2:+25073318 Msa0064110:CDS
GAGCTAGTAGTTCTTGGAAG+GGG 0.635071 1_2:+25073319 Msa0064110:CDS
TTCTAGCTCACAGAACGGCA+AGG 0.636392 1_2:+25069477 Msa0064110:CDS
AGAACGAGGTTGAGATTGTG+TGG 0.636979 1_2:-25067754 None:intergenic
CGTGCTGTTTCAAAATCTCA+CGG 0.637487 1_2:+25075130 Msa0064110:CDS
ATTTGCAGAAGGCACGTCAG+GGG 0.639024 1_2:-25069446 None:intergenic
CATGGGGCTTGTAAGGAGGT+GGG 0.640775 1_2:-25070440 None:intergenic
CAAATAGCTGTGGAGGCTTG+TGG 0.641729 1_2:+25069280 Msa0064110:five_prime_UTR
GACGAAGCTGCTGACACAGT+TGG 0.641967 1_2:+25074101 Msa0064110:CDS
GGAAAATCTAGTAATAACAA+TGG 0.642336 1_2:+25069937 Msa0064110:CDS
CTTCTCATAGTCACGATGGA+CGG 0.642362 1_2:+25069410 Msa0064110:CDS
TTGGAAGGGGCAAAGCGACA+AGG 0.644508 1_2:+25073332 Msa0064110:CDS
GGTTGAGATTGTGTGGTCGG+AGG 0.644573 1_2:-25067747 None:intergenic
GAACCACCAGGACTGTTCCG+TGG 0.646064 1_2:+25072825 Msa0064110:CDS
TGGACGTGGAGAGCATCCCA+AGG 0.646324 1_2:+25072845 Msa0064110:CDS
AAGGAATCAGTCTTATCTAG+TGG 0.649319 1_2:-25070066 None:intergenic
CAAAGTTCTAGCTCACAGAA+CGG 0.651831 1_2:+25069472 Msa0064110:CDS
ACAAGAGGAGAAATACATGT+GGG 0.652557 1_2:+25072370 Msa0064110:CDS
CCATAGTTGACAAATAGCTG+TGG 0.655992 1_2:+25069270 Msa0064110:five_prime_UTR
AAAATGGCATTGTAAACAGG+AGG 0.658280 1_2:-25074362 None:intergenic
GGAAAAGAAGGCCCTAAGGG+AGG 0.660903 1_2:+25072337 Msa0064110:intron
CAAATCTCAAAACCTATGTG+AGG 0.661711 1_2:+25069572 Msa0064110:CDS
ATACAAATACAATTATGCAA+GGG 0.664339 1_2:+25076260 Msa0064110:three_prime_UTR
TTTGACCCCTGAACAAGAGG+AGG 0.669124 1_2:+25070497 Msa0064110:CDS
ACCTGATAGAATCTTTACCA+AGG 0.670504 1_2:-25074316 None:intergenic
AACAAGAGGAGAAATACATG+TGG 0.673205 1_2:+25072369 Msa0064110:CDS
TCAACTTCTCATAGTCACGA+TGG 0.681705 1_2:+25069406 Msa0064110:CDS
TTGACAGTCCATGAAGAAAG+GGG 0.682317 1_2:-25076419 None:intergenic
AAACGTCACTAAAGTCAACA+AGG 0.682671 1_2:+25070275 Msa0064110:CDS
GGAAAAGTATGAGAAAGCAA+GGG 0.683454 1_2:+25073353 Msa0064110:CDS
GAGTAGCTGAAGAACAGGTG+TGG 0.685987 1_2:-25067708 None:intergenic
CAGGTATGAAAATACAGTTG+AGG 0.687734 1_2:+25074334 Msa0064110:CDS
TTATATAGAGAGAATTAGGG+CGG 0.700748 1_2:+25073500 Msa0064110:CDS
CGTCCACGGAACAGTCCTGG+TGG 0.703564 1_2:-25072828 None:intergenic
ACCTCCTTACAAGCCCCATG+GGG 0.724905 1_2:+25070443 Msa0064110:CDS
ATATTCCTTTGTCAGCAAGG+CGG 0.731343 1_2:+25069893 Msa0064110:CDS
GCTGAAAACAGATTACGACA+GGG 0.763147 1_2:+25075333 Msa0064110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGATTATATATTTTTTAGT+TGG + chr1_2:25068060-25068079 Msa0064110:intron 10.0%
!! ATACTAATTTATTTAATGTT+AGG - chr1_2:25071424-25071443 None:intergenic 10.0%
!!! TATTTTTTGTTAAATCTTTT+AGG + chr1_2:25072785-25072804 Msa0064110:intron 10.0%
!!! TTATACTTTATTTTATTAGA+TGG + chr1_2:25073002-25073021 Msa0064110:intron 10.0%
!!! TATACTTTATTTTATTAGAT+GGG + chr1_2:25073003-25073022 Msa0064110:intron 10.0%
!!! TATCAAATTTTTATTCATCT+TGG + chr1_2:25067899-25067918 Msa0064110:intron 15.0%
!!! ATTTTTGTTATTTTGTTGAT+TGG + chr1_2:25067978-25067997 Msa0064110:intron 15.0%
!! ATTATGATTATGATTAAGAT+TGG + chr1_2:25068019-25068038 Msa0064110:intron 15.0%
!!! AACACAAAAAATATAGATTT+TGG + chr1_2:25068321-25068340 Msa0064110:intron 15.0%
!!! GTTTTATTCATTATTAAGAT+GGG + chr1_2:25068580-25068599 Msa0064110:intron 15.0%
!! CTACAGAATAATAATAATTT+GGG + chr1_2:25069916-25069935 Msa0064110:CDS 15.0%
!!! TTTACAAGTATATATTTTGT+GGG + chr1_2:25070657-25070676 Msa0064110:intron 15.0%
!! TTTAGAAAAATAAAACTCTT+CGG - chr1_2:25070863-25070882 None:intergenic 15.0%
!!! TGATAATTGTTATTGTTTAT+TGG + chr1_2:25072874-25072893 Msa0064110:intron 15.0%
!!! TGAATAACTTATTATTGATT+GGG - chr1_2:25073284-25073303 None:intergenic 15.0%
!! TTGAATAACTTATTATTGAT+TGG - chr1_2:25073285-25073304 None:intergenic 15.0%
!!! TAAAAGAACCTTTTTAATTT+TGG + chr1_2:25073452-25073471 Msa0064110:intron 15.0%
!!! ACTTCAATATAGTTTTTAAA+AGG - chr1_2:25074818-25074837 None:intergenic 15.0%
!!! TCTTTAAAAGATCAAATTAA+AGG + chr1_2:25074846-25074865 Msa0064110:intron 15.0%
!!! TGATAATATTCTTTAGAATT+TGG + chr1_2:25075197-25075216 Msa0064110:intron 15.0%
!!! TTATTTGTTTTTCATCAATT+GGG - chr1_2:25075765-25075784 None:intergenic 15.0%
!!! CTTTTTCTTATATATAAGAT+CGG - chr1_2:25075921-25075940 None:intergenic 15.0%
!!! TAAATAAAAGTTGATGTATA+TGG + chr1_2:25075946-25075965 Msa0064110:intron 15.0%
!!! TTATTTTGATTTCATGTAAA+AGG - chr1_2:25076310-25076329 None:intergenic 15.0%
!!! ATTGTTATTGTTATTATGTA+TGG + chr1_2:25076528-25076547 Msa0064110:three_prime_UTR 15.0%
!! TATATAGATGTTAGATAATC+AGG + chr1_2:25067647-25067666 Msa0064110:five_prime_UTR 20.0%
!!! TTGTGATTATGTTTTTGTTA+TGG - chr1_2:25067811-25067830 None:intergenic 20.0%
!! ATAACAAAAACATAATCACA+AGG + chr1_2:25067810-25067829 Msa0064110:five_prime_UTR 20.0%
!! CTGAAATTGATGAAAATAAA+GGG - chr1_2:25067841-25067860 None:intergenic 20.0%
!! ACTGAAATTGATGAAAATAA+AGG - chr1_2:25067842-25067861 None:intergenic 20.0%
!!! ATATATTTTTTAGTTGGTTG+TGG + chr1_2:25068066-25068085 Msa0064110:intron 20.0%
!!! TTATTCTGTTCATTGATAAT+GGG + chr1_2:25068558-25068577 Msa0064110:intron 20.0%
!!! GGTTTTATTCATTATTAAGA+TGG + chr1_2:25068579-25068598 Msa0064110:intron 20.0%
!! ATGAAGCAATAATTGATATT+TGG + chr1_2:25068963-25068982 Msa0064110:intron 20.0%
!! TGAAGCAATAATTGATATTT+GGG + chr1_2:25068964-25068983 Msa0064110:intron 20.0%
!!! GAAATCCTTTTAAAAATTAC+TGG - chr1_2:25069346-25069365 None:intergenic 20.0%
!! GCTACAGAATAATAATAATT+TGG + chr1_2:25069915-25069934 Msa0064110:CDS 20.0%
!!! CTTTACAAGTATATATTTTG+TGG + chr1_2:25070656-25070675 Msa0064110:intron 20.0%
!!! TTAGTTTTTTTGTGAAATTG+AGG + chr1_2:25070885-25070904 Msa0064110:intron 20.0%
!!! TTGAGTATTAATTTTGCATT+TGG + chr1_2:25071300-25071319 Msa0064110:intron 20.0%
!! TAATTCCTAATATCATCATA+CGG + chr1_2:25071567-25071586 Msa0064110:intron 20.0%
!!! ACATTTCTTTTTCAATCTTT+GGG + chr1_2:25072117-25072136 Msa0064110:intron 20.0%
!! TTAAAAAGACAAACAAGTTT+GGG - chr1_2:25072449-25072468 None:intergenic 20.0%
!! ATTAAAAAGACAAACAAGTT+TGG - chr1_2:25072450-25072469 None:intergenic 20.0%
!!! TTTTGTTAAATCTTTTAGGT+TGG + chr1_2:25072789-25072808 Msa0064110:intron 20.0%
!!! AAAAAAATGTAAACTTGCTT+CGG + chr1_2:25072902-25072921 Msa0064110:intron 20.0%
!! TTAAAAGCAAATGAATACTA+TGG + chr1_2:25073152-25073171 Msa0064110:intron 20.0%
!!! AAGGTATTCCAAAATTAAAA+AGG - chr1_2:25073463-25073482 None:intergenic 20.0%
!! AGAATTATATAGAGAGAATT+AGG + chr1_2:25073496-25073515 Msa0064110:intron 20.0%
!! GAATTATATAGAGAGAATTA+GGG + chr1_2:25073497-25073516 Msa0064110:intron 20.0%
!! ATTTGAAAAATACACATTGA+AGG - chr1_2:25073869-25073888 None:intergenic 20.0%
!!! TTATATAAGATTTTACCAAG+AGG + chr1_2:25073890-25073909 Msa0064110:intron 20.0%
!!! TACACTTTGAAAATGAAATA+AGG - chr1_2:25073940-25073959 None:intergenic 20.0%
!! AATTATAACAATGAAGTGTA+TGG - chr1_2:25075434-25075453 None:intergenic 20.0%
!! TAAAGAAGATTTAAAAACTG+TGG + chr1_2:25075557-25075576 Msa0064110:CDS 20.0%
!!! TATTTGTTTTTCATCAATTG+GGG - chr1_2:25075764-25075783 None:intergenic 20.0%
!!! GTTATTTGTTTTTCATCAAT+TGG - chr1_2:25075766-25075785 None:intergenic 20.0%
!! TCAACAAAAGTTTATGTATT+CGG - chr1_2:25075985-25076004 None:intergenic 20.0%
!!! ACTATAGTATTGATTTTGAT+TGG + chr1_2:25076108-25076127 Msa0064110:intron 20.0%
!! ATACAAATACAATTATGCAA+GGG + chr1_2:25076260-25076279 Msa0064110:three_prime_UTR 20.0%
!!! TTTGTTTTATTTAAGTTCAG+CGG + chr1_2:25076343-25076362 Msa0064110:three_prime_UTR 20.0%
!! AATTGTTCATTTAACTAATC+TGG + chr1_2:25076380-25076399 Msa0064110:three_prime_UTR 20.0%
!! ATTGTTCATTTAACTAATCT+GGG + chr1_2:25076381-25076400 Msa0064110:three_prime_UTR 20.0%
! ATGATTAAGATTGGATTCAT+TGG + chr1_2:25068028-25068047 Msa0064110:intron 25.0%
! TTCAGTTATTGTATGTGATT+AGG + chr1_2:25068167-25068186 Msa0064110:intron 25.0%
! CTTATTCTGTTCATTGATAA+TGG + chr1_2:25068557-25068576 Msa0064110:intron 25.0%
!!! GGAAAGTTCATTTTTTTAGT+TGG + chr1_2:25068601-25068620 Msa0064110:intron 25.0%
!!! TTCATTTTTTTAGTTGGTTG+TGG + chr1_2:25068607-25068626 Msa0064110:intron 25.0%
! GACTGGATATTGTTTAAATT+TGG + chr1_2:25068718-25068737 Msa0064110:intron 25.0%
!! ATGTTAGGGTTTTTAAATAG+CGG - chr1_2:25068909-25068928 None:intergenic 25.0%
! AGTTATTAGTACTAGTTACT+AGG - chr1_2:25069203-25069222 None:intergenic 25.0%
!! ATGGTCCAGTAATTTTTAAA+AGG + chr1_2:25069338-25069357 Msa0064110:CDS 25.0%
! GGAAAATCTAGTAATAACAA+TGG + chr1_2:25069937-25069956 Msa0064110:CDS 25.0%
! AAATCTAGTAATAACAATGG+TGG + chr1_2:25069940-25069959 Msa0064110:CDS 25.0%
!! TTCTTGTTTAATACCAACAT+TGG - chr1_2:25070019-25070038 None:intergenic 25.0%
! ATGTTGGTATTAAACAAGAA+AGG + chr1_2:25070019-25070038 Msa0064110:CDS 25.0%
! AATTAATGCTAAACAGACAT+CGG + chr1_2:25070134-25070153 Msa0064110:CDS 25.0%
!! TTTGCCTTTTTCTTAAAAGA+TGG - chr1_2:25070309-25070328 None:intergenic 25.0%
!! ACAAATGTTTTCACTGTTTT+GGG + chr1_2:25070536-25070555 Msa0064110:intron 25.0%
! AAAATAAAACTCTTCGGATT+TGG - chr1_2:25070857-25070876 None:intergenic 25.0%
! TAAACTTAGTATGTATATGC+AGG + chr1_2:25070965-25070984 Msa0064110:intron 25.0%
!! CAAAATTCAAGGAAAACTTT+TGG + chr1_2:25071036-25071055 Msa0064110:CDS 25.0%
! GAATATCTCAAATCATCATT+TGG + chr1_2:25071223-25071242 Msa0064110:intron 25.0%
!! GTATTAATTTTGCATTTGGT+TGG + chr1_2:25071304-25071323 Msa0064110:intron 25.0%
! TGTTATATAAGCTATAAGCT+TGG + chr1_2:25071530-25071549 Msa0064110:intron 25.0%
! GTATGATGATATTAGGAATT+AGG - chr1_2:25071568-25071587 None:intergenic 25.0%
! GAAGGTTGTAAAATAACAAA+AGG - chr1_2:25071818-25071837 None:intergenic 25.0%
!!! AATAGACAATGGGTTAAATT+TGG + chr1_2:25071841-25071860 Msa0064110:CDS 25.0%
! GTATGATGTACTTCATTATT+TGG - chr1_2:25072080-25072099 None:intergenic 25.0%
!!! GACATTTCTTTTTCAATCTT+TGG + chr1_2:25072116-25072135 Msa0064110:intron 25.0%
!!! ATGCATTGGGTTTTAATATA+TGG + chr1_2:25072164-25072183 Msa0064110:intron 25.0%
!!! TGCATTGGGTTTTAATATAT+GGG + chr1_2:25072165-25072184 Msa0064110:intron 25.0%
!! TTAATATATGGGATTTGTTC+CGG + chr1_2:25072176-25072195 Msa0064110:intron 25.0%
! CTAATAAAAAGCTTCACAAA+AGG - chr1_2:25072238-25072257 None:intergenic 25.0%
!! TCTTTTTAATGTTTGATCAG+CGG + chr1_2:25072460-25072479 Msa0064110:intron 25.0%
!!! AGAAGTTTCTTTTTAAGCAT+AGG + chr1_2:25072507-25072526 Msa0064110:intron 25.0%
!!! ACAATTTTTCCCTTTTGTTT+TGG + chr1_2:25072610-25072629 Msa0064110:intron 25.0%
! AGTTAACAGAAGAAAAGTTA+AGG - chr1_2:25072696-25072715 None:intergenic 25.0%
! ACATTTCAAATGTAAAAGCT+TGG - chr1_2:25072724-25072743 None:intergenic 25.0%
! ACAATTATCATAACAACCTT+GGG - chr1_2:25072864-25072883 None:intergenic 25.0%
! AACAATTATCATAACAACCT+TGG - chr1_2:25072865-25072884 None:intergenic 25.0%
! ATATTAATTACGACATCACT+TGG - chr1_2:25073051-25073070 None:intergenic 25.0%
! AGTGATGTCGTAATTAATAT+TGG + chr1_2:25073051-25073070 Msa0064110:CDS 25.0%
! ATGTCGTAATTAATATTGGA+AGG + chr1_2:25073055-25073074 Msa0064110:CDS 25.0%
! TGTCGTAATTAATATTGGAA+GGG + chr1_2:25073056-25073075 Msa0064110:CDS 25.0%
! TTATTCAAATACGTGTTTCT+GGG + chr1_2:25073297-25073316 Msa0064110:CDS 25.0%
!!! TTTTGGAATACCTTAACATT+TGG + chr1_2:25073469-25073488 Msa0064110:intron 25.0%
!! TTTGGAATACCTTAACATTT+GGG + chr1_2:25073470-25073489 Msa0064110:intron 25.0%
!!! TATTTGATTTGCAAAAGTCA+CGG - chr1_2:25074047-25074066 None:intergenic 25.0%
!! AGAATAAACCAATTTAAGAC+CGG - chr1_2:25074231-25074250 None:intergenic 25.0%
! TCTTAACTGCTAATACTTAA+AGG + chr1_2:25074248-25074267 Msa0064110:intron 25.0%
! CTTAACTGCTAATACTTAAA+GGG + chr1_2:25074249-25074268 Msa0064110:intron 25.0%
!! TAAACATTTTCTCACCTTTT+TGG - chr1_2:25074394-25074413 None:intergenic 25.0%
! TACATTAAATAGTCATCTGA+AGG + chr1_2:25074520-25074539 Msa0064110:CDS 25.0%
! ACTGTTGTCATATAATTCAA+GGG - chr1_2:25074925-25074944 None:intergenic 25.0%
! AACTGTTGTCATATAATTCA+AGG - chr1_2:25074926-25074945 None:intergenic 25.0%
! TATATGACAACAGTTGAATA+AGG + chr1_2:25074931-25074950 Msa0064110:intron 25.0%
! TTGAATAAGGATACTAAAGA+TGG + chr1_2:25074944-25074963 Msa0064110:CDS 25.0%
! AAAAGTTCTTGTCTATAATC+AGG + chr1_2:25074979-25074998 Msa0064110:CDS 25.0%
! TGAAAAGATTGATGAACTTA+AGG + chr1_2:25075174-25075193 Msa0064110:CDS 25.0%
!!! TCATTTTGTTTGAAATTCAG+AGG + chr1_2:25075254-25075273 Msa0064110:intron 25.0%
!!! CATTTTGTTTGAAATTCAGA+GGG + chr1_2:25075255-25075274 Msa0064110:intron 25.0%
! TTGTGATTTATGTAACATAC+AGG + chr1_2:25075472-25075491 Msa0064110:intron 25.0%
! ATACAGGATAAAGAAAAAGA+TGG + chr1_2:25075488-25075507 Msa0064110:intron 25.0%
!!! ATTTGTTTTTCATCAATTGG+GGG - chr1_2:25075763-25075782 None:intergenic 25.0%
! AAAACACATTAAAGCCTTTA+TGG - chr1_2:25075880-25075899 None:intergenic 25.0%
! TTTCTTATATATAAGATCGG+AGG - chr1_2:25075918-25075937 None:intergenic 25.0%
! TCAAACCAAAAACAACATTT+GGG - chr1_2:25076072-25076091 None:intergenic 25.0%
! TTCAAACCAAAAACAACATT+TGG - chr1_2:25076073-25076092 None:intergenic 25.0%
! TTTGTATGTCTTCATCTTAT+AGG - chr1_2:25076247-25076266 None:intergenic 25.0%
! CATACAAATACAATTATGCA+AGG + chr1_2:25076259-25076278 Msa0064110:three_prime_UTR 25.0%
! TTGTTCATTTAACTAATCTG+GGG + chr1_2:25076382-25076401 Msa0064110:three_prime_UTR 25.0%
! ATTATTTAACGTGAAAACCA+TGG + chr1_2:25076454-25076473 Msa0064110:three_prime_UTR 25.0%
TCAAGAAGTAACAGACAAAA+GGG - chr1_2:25067867-25067886 None:intergenic 30.0%
ATCAAGAAGTAACAGACAAA+AGG - chr1_2:25067868-25067887 None:intergenic 30.0%
! TTTGTGTGGAATATGTGTTT+TGG + chr1_2:25067930-25067949 Msa0064110:intron 30.0%
ATGTTAAGCTTGCAATTCTT+TGG + chr1_2:25068096-25068115 Msa0064110:intron 30.0%
TGTATGTGATTAGGATGAAT+TGG + chr1_2:25068176-25068195 Msa0064110:intron 30.0%
GGAAAACAAATAGAGTTCTA+GGG - chr1_2:25068468-25068487 None:intergenic 30.0%
AGGAAAACAAATAGAGTTCT+AGG - chr1_2:25068469-25068488 None:intergenic 30.0%
!! GAACTCTATTTGTTTTCCTT+AGG + chr1_2:25068470-25068489 Msa0064110:intron 30.0%
GATGTTTCTTTCTTATTGAC+TGG + chr1_2:25068701-25068720 Msa0064110:intron 30.0%
TGGTTATTGCATATAGATTG+TGG + chr1_2:25068738-25068757 Msa0064110:intron 30.0%
! TGATATTTGGGTGTTCTTTT+TGG + chr1_2:25068976-25068995 Msa0064110:intron 30.0%
GGCTTGTGGTAAATTAAATA+TGG + chr1_2:25069294-25069313 Msa0064110:exon 30.0%
! AAATTTTGAACTTCCTGAAG+GGG - chr1_2:25069599-25069618 None:intergenic 30.0%
! CAAATTTTGAACTTCCTGAA+GGG - chr1_2:25069600-25069619 None:intergenic 30.0%
AGTTCAAAATTTGCGTCATT+TGG + chr1_2:25069607-25069626 Msa0064110:CDS 30.0%
!! GAAGATAGTTCTAGGAAAAA+TGG + chr1_2:25069688-25069707 Msa0064110:CDS 30.0%
TATATTATCCATCTCGTCTT+CGG - chr1_2:25069737-25069756 None:intergenic 30.0%
ATAATATACCATTGAGTGCT+AGG + chr1_2:25069749-25069768 Msa0064110:CDS 30.0%
TTTCTTAACAGAAGAATGCA+AGG - chr1_2:25070088-25070107 None:intergenic 30.0%
GTCTGTTTAGCATTAATTGA+CGG - chr1_2:25070132-25070151 None:intergenic 30.0%
! TTATTCATTCTTTGGGAAAG+AGG - chr1_2:25070210-25070229 None:intergenic 30.0%
AGATGATTTATTCACTGATG+TGG - chr1_2:25070238-25070257 None:intergenic 30.0%
!! TGCTCCATCTTTTAAGAAAA+AGG + chr1_2:25070302-25070321 Msa0064110:CDS 30.0%
AAGGCAAATTTCAAAAAACC+AGG + chr1_2:25070321-25070340 Msa0064110:CDS 30.0%
! GACAAATGTTTTCACTGTTT+TGG + chr1_2:25070535-25070554 Msa0064110:intron 30.0%
!! TGTTTTTGTGAGTTTCACAT+TGG + chr1_2:25070585-25070604 Msa0064110:intron 30.0%
ACATTGGATGTTATATGACT+TGG + chr1_2:25070601-25070620 Msa0064110:intron 30.0%
!! TTGGAAAAAGTGTTCATAAG+TGG + chr1_2:25070620-25070639 Msa0064110:intron 30.0%
!! TGGAAAAAGTGTTCATAAGT+GGG + chr1_2:25070621-25070640 Msa0064110:intron 30.0%
!! TATATTTTGTGGGTTGAGTT+TGG + chr1_2:25070667-25070686 Msa0064110:intron 30.0%
ACATTTCTTACCTTACATGT+TGG + chr1_2:25070805-25070824 Msa0064110:intron 30.0%
CATGCAAAAAGCAAAATTCA+AGG + chr1_2:25071025-25071044 Msa0064110:CDS 30.0%
AAATCATGTGATTCAGAATC+TGG + chr1_2:25071085-25071104 Msa0064110:CDS 30.0%
!! ACTTTACACCGATTTATGAT+TGG + chr1_2:25071117-25071136 Msa0064110:CDS 30.0%
ATTTGGCACCAATCATAAAT+CGG - chr1_2:25071128-25071147 None:intergenic 30.0%
! TCTTCTTCTCCTTTTCAATT+TGG - chr1_2:25071145-25071164 None:intergenic 30.0%
AAACAACTAATATCTGCATG+TGG - chr1_2:25071281-25071300 None:intergenic 30.0%
CAAGTTCGTAAATCTTACAT+TGG + chr1_2:25071354-25071373 Msa0064110:intron 30.0%
TCGTAAATCTTACATTGGAT+TGG + chr1_2:25071359-25071378 Msa0064110:intron 30.0%
TTCAAGTCTGAGAAATTTCA+AGG + chr1_2:25071467-25071486 Msa0064110:intron 30.0%
TTTGTCAGTTACTTCTATCA+GGG - chr1_2:25071493-25071512 None:intergenic 30.0%
! TTTTGTCAGTTACTTCTATC+AGG - chr1_2:25071494-25071513 None:intergenic 30.0%
CAAAAGGAAAAAGAATCTCA+AGG - chr1_2:25071802-25071821 None:intergenic 30.0%
ATTTAACCCATTGTCTATTC+TGG - chr1_2:25071840-25071859 None:intergenic 30.0%
!!! TTCTTTTTCAATCTTTGGGA+AGG + chr1_2:25072121-25072140 Msa0064110:intron 30.0%
ATATGAAGTACATCATGCAT+TGG + chr1_2:25072150-25072169 Msa0064110:intron 30.0%
TATGAAGTACATCATGCATT+GGG + chr1_2:25072151-25072170 Msa0064110:intron 30.0%
ATGTATATGCCTGTATTAAC+CGG - chr1_2:25072198-25072217 None:intergenic 30.0%
!! TCGTTTTTATCAGGAAAAGA+AGG + chr1_2:25072325-25072344 Msa0064110:intron 30.0%
!! GTTTCTTTTTAAGCATAGGT+AGG + chr1_2:25072511-25072530 Msa0064110:intron 30.0%
AGGTAGGAAAACAAAGTAAT+TGG + chr1_2:25072527-25072546 Msa0064110:intron 30.0%
!!! TTTTTCCCTTTTGTTTTGGT+TGG + chr1_2:25072614-25072633 Msa0064110:intron 30.0%
! TAAACTTGCTTCGGATATAA+TGG + chr1_2:25072911-25072930 Msa0064110:intron 30.0%
AGCAAATGAATACTATGGAT+TGG + chr1_2:25073157-25073176 Msa0064110:intron 30.0%
!!! ATCATTGATTTTTGTGCTCT+TGG + chr1_2:25073201-25073220 Msa0064110:intron 30.0%
GACATGATAATACAGTTACT+TGG + chr1_2:25073241-25073260 Msa0064110:CDS 30.0%
TGATAATACAGTTACTTGGT+TGG + chr1_2:25073245-25073264 Msa0064110:CDS 30.0%
GTTATTCAAATACGTGTTTC+TGG + chr1_2:25073296-25073315 Msa0064110:CDS 30.0%
TTATATAGAGAGAATTAGGG+CGG + chr1_2:25073500-25073519 Msa0064110:CDS 30.0%
!! TTATTGACAAACTAGCTTTG+AGG + chr1_2:25073586-25073605 Msa0064110:CDS 30.0%
!! TATTGACAAACTAGCTTTGA+GGG + chr1_2:25073587-25073606 Msa0064110:CDS 30.0%
ATCTATATGTTATCTAGGGA+AGG - chr1_2:25073678-25073697 None:intergenic 30.0%
GCACATCTATATGTTATCTA+GGG - chr1_2:25073682-25073701 None:intergenic 30.0%
AGCACATCTATATGTTATCT+AGG - chr1_2:25073683-25073702 None:intergenic 30.0%
ACATATAGATGTGCTAAAAG+AGG + chr1_2:25073688-25073707 Msa0064110:intron 30.0%
GTCAAAGTATGCTAAATACT+TGG + chr1_2:25073767-25073786 Msa0064110:intron 30.0%
AAGTATGCTAAATACTTGGA+AGG + chr1_2:25073771-25073790 Msa0064110:intron 30.0%
CATAAATAATTGCCATGAGA+TGG - chr1_2:25073969-25073988 None:intergenic 30.0%
ATAAAACGCAATGAAGAGAT+AGG - chr1_2:25074011-25074030 None:intergenic 30.0%
CTTATGATTTACATTTGCTC+AGG + chr1_2:25074073-25074092 Msa0064110:intron 30.0%
TTCAAAATGGCATTGTAAAC+AGG - chr1_2:25074368-25074387 None:intergenic 30.0%
!!! ACCTTTTTGGAACTTCAAAA+TGG - chr1_2:25074381-25074400 None:intergenic 30.0%
ATATATTGCCTATTAGACTG+AGG + chr1_2:25074423-25074442 Msa0064110:intron 30.0%
!! ATCTGCTTTTCTCAATTATC+AGG + chr1_2:25074455-25074474 Msa0064110:intron 30.0%
TGAATGATGCATTGAATGTA+CGG - chr1_2:25074577-25074596 None:intergenic 30.0%
ATTCAATGCATCATTCACTT+TGG + chr1_2:25074580-25074599 Msa0064110:CDS 30.0%
ATCATTCACTTTGGATGATA+TGG + chr1_2:25074589-25074608 Msa0064110:CDS 30.0%
! CAGATTGTTGTGTATTTTAC+TGG + chr1_2:25075046-25075065 Msa0064110:intron 30.0%
! TGATGTATCTTTTCCATAAC+AGG + chr1_2:25075084-25075103 Msa0064110:intron 30.0%
!! TCTTTAGAATTTGGAAACCA+TGG + chr1_2:25075206-25075225 Msa0064110:intron 30.0%
! CATTTTCTTAATTTTTGCGC+TGG - chr1_2:25075520-25075539 None:intergenic 30.0%
CAGCGCAAAAATTAAGAAAA+TGG + chr1_2:25075518-25075537 Msa0064110:CDS 30.0%
AATAACAGTCAAGCTTCTAT+TGG + chr1_2:25075780-25075799 Msa0064110:intron 30.0%
TAAGCAAGATCATACAAACA+AGG - chr1_2:25075812-25075831 None:intergenic 30.0%
!! GTATGATCTTGCTTATTTTC+CGG + chr1_2:25075817-25075836 Msa0064110:intron 30.0%
! ATTACTAGTCTGATTCTGAT+GGG - chr1_2:25075857-25075876 None:intergenic 30.0%
ATCAGACTAGTAATCCATAA+AGG + chr1_2:25075863-25075882 Msa0064110:intron 30.0%
! GATGTATATGGTCTAAAACT+TGG + chr1_2:25075958-25075977 Msa0064110:intron 30.0%
AAACCAAAAACAACATTTGG+GGG - chr1_2:25076070-25076089 None:intergenic 30.0%
CAAACCAAAAACAACATTTG+GGG - chr1_2:25076071-25076090 None:intergenic 30.0%
!! TGACTAACATACTCTTGTTT+TGG + chr1_2:25076135-25076154 Msa0064110:intron 30.0%
!!! GACTAACATACTCTTGTTTT+GGG + chr1_2:25076136-25076155 Msa0064110:intron 30.0%
TCATTATCCACATTTAACCA+TGG - chr1_2:25076474-25076493 None:intergenic 30.0%
ATGGTTAAATGTGGATAATG+AGG + chr1_2:25076473-25076492 Msa0064110:three_prime_UTR 30.0%
ATGTTAGATAATCAGGTCAC+CGG + chr1_2:25067654-25067673 Msa0064110:five_prime_UTR 35.0%
CAGATGATTTGATGAAGTTC+AGG - chr1_2:25067683-25067702 None:intergenic 35.0%
!!! TCTTGGTTTTGTTGTTTGTG+TGG + chr1_2:25067916-25067935 Msa0064110:intron 35.0%
GACAGGAGATAAGTAAAATC+CGG - chr1_2:25068272-25068291 None:intergenic 35.0%
ACATAAACCACAAACACAGA+AGG - chr1_2:25068367-25068386 None:intergenic 35.0%
! CTTATGCAGTTTCATTTTGC+TGG + chr1_2:25068408-25068427 Msa0064110:intron 35.0%
!! TCCTTAGGCATTTTAGCATT+TGG + chr1_2:25068485-25068504 Msa0064110:intron 35.0%
!! CCTTAGGCATTTTAGCATTT+GGG + chr1_2:25068486-25068505 Msa0064110:intron 35.0%
!! CTTAGGCATTTTAGCATTTG+GGG + chr1_2:25068487-25068506 Msa0064110:intron 35.0%
TTTGGGGATGTTGTTAATCA+CGG + chr1_2:25068503-25068522 Msa0064110:intron 35.0%
ATGTTGTTAATCACGGATAG+TGG + chr1_2:25068510-25068529 Msa0064110:intron 35.0%
!! AATCACGGATAGTGGAAAAA+AGG + chr1_2:25068518-25068537 Msa0064110:intron 35.0%
!! ATCACGGATAGTGGAAAAAA+GGG + chr1_2:25068519-25068538 Msa0064110:intron 35.0%
TTATTGTAAGCCCTAGCATT+TGG + chr1_2:25068815-25068834 Msa0064110:intron 35.0%
!! CACGAATTTGATGATGAAGA+TGG + chr1_2:25069319-25069338 Msa0064110:CDS 35.0%
CTCAATTGCATTCAGAAACA+AGG + chr1_2:25069380-25069399 Msa0064110:CDS 35.0%
CAAATCTCAAAACCTATGTG+AGG + chr1_2:25069572-25069591 Msa0064110:CDS 35.0%
! GCAAATTTTGAACTTCCTGA+AGG - chr1_2:25069601-25069620 None:intergenic 35.0%
TCCTTAACATGAACATGAAC+GGG - chr1_2:25069667-25069686 None:intergenic 35.0%
CTCCTTAACATGAACATGAA+CGG - chr1_2:25069668-25069687 None:intergenic 35.0%
TTAAGGAGGAAGATAGTTCT+AGG + chr1_2:25069680-25069699 Msa0064110:CDS 35.0%
TGAGATTTCTTGACAACAAC+AGG - chr1_2:25069811-25069830 None:intergenic 35.0%
ATGATATTCCTTTGTCAGCA+AGG + chr1_2:25069890-25069909 Msa0064110:CDS 35.0%
CCTTTCTGAACATTTGAAAG+TGG - chr1_2:25069982-25070001 None:intergenic 35.0%
CCACTTTCAAATGTTCAGAA+AGG + chr1_2:25069979-25069998 Msa0064110:CDS 35.0%
TTATCTAGTGGTCTCTTAAC+AGG - chr1_2:25070057-25070076 None:intergenic 35.0%
! AAGGAATCAGTCTTATCTAG+TGG - chr1_2:25070069-25070088 None:intergenic 35.0%
GGCATGCTTATTCATTCTTT+GGG - chr1_2:25070217-25070236 None:intergenic 35.0%
TGGCATGCTTATTCATTCTT+TGG - chr1_2:25070218-25070237 None:intergenic 35.0%
AAACGTCACTAAAGTCAACA+AGG + chr1_2:25070275-25070294 Msa0064110:CDS 35.0%
AACTGTTCTGATTTATTGCC+TGG - chr1_2:25070342-25070361 None:intergenic 35.0%
!! GCAGAAAAAATGGACTACTT+TGG + chr1_2:25070398-25070417 Msa0064110:CDS 35.0%
!!! TACCTTACATGTTGGTTTTG+TGG + chr1_2:25070813-25070832 Msa0064110:intron 35.0%
!!! ACCTTACATGTTGGTTTTGT+GGG + chr1_2:25070814-25070833 Msa0064110:intron 35.0%
AAACTCTTCGGATTTGGATA+GGG - chr1_2:25070851-25070870 None:intergenic 35.0%
AAAACTCTTCGGATTTGGAT+AGG - chr1_2:25070852-25070871 None:intergenic 35.0%
!! TGATTGGTGCCAAATTGAAA+AGG + chr1_2:25071133-25071152 Msa0064110:CDS 35.0%
!!! ATCATCATTTGGTTTTGACG+TGG + chr1_2:25071234-25071253 Msa0064110:intron 35.0%
GACCATGTAATACATGTGAT+AGG + chr1_2:25071381-25071400 Msa0064110:intron 35.0%
TGCCTATCACATGTATTACA+TGG - chr1_2:25071386-25071405 None:intergenic 35.0%
GTGGGAAAACGATATTGTAA+GGG - chr1_2:25071602-25071621 None:intergenic 35.0%
AGTGGGAAAACGATATTGTA+AGG - chr1_2:25071603-25071622 None:intergenic 35.0%
!! AAAGGTTGTTTTCCAGAAGT+GGG - chr1_2:25071620-25071639 None:intergenic 35.0%
! ATTTCAAGTACTTTCGGGAA+AGG - chr1_2:25071638-25071657 None:intergenic 35.0%
! TCGTCATTTCAAGTACTTTC+GGG - chr1_2:25071643-25071662 None:intergenic 35.0%
! GTCGTCATTTCAAGTACTTT+CGG - chr1_2:25071644-25071663 None:intergenic 35.0%
AACCTTCCAGAATAGACAAT+GGG + chr1_2:25071831-25071850 Msa0064110:CDS 35.0%
!! GACAATGGGTTAAATTTGGT+AGG + chr1_2:25071845-25071864 Msa0064110:intron 35.0%
TAAACTCTGTATGAGATACG+TGG - chr1_2:25071927-25071946 None:intergenic 35.0%
AACTCAGAACTCGTTATGTT+GGG - chr1_2:25071976-25071995 None:intergenic 35.0%
!! AACATAACGAGTTCTGAGTT+GGG + chr1_2:25071976-25071995 Msa0064110:intron 35.0%
CTGATAAAAACGAGAGAAGA+GGG - chr1_2:25072318-25072337 None:intergenic 35.0%
! TTTCATTTTCTCCTCCCTTA+GGG - chr1_2:25072351-25072370 None:intergenic 35.0%
AACAAGAGGAGAAATACATG+TGG + chr1_2:25072369-25072388 Msa0064110:CDS 35.0%
ACAAGAGGAGAAATACATGT+GGG + chr1_2:25072370-25072389 Msa0064110:CDS 35.0%
!! TGTTGATGGTGTTAAAGAGA+AGG + chr1_2:25072397-25072416 Msa0064110:CDS 35.0%
AGTAATTGGCAATTCCTTCT+TGG + chr1_2:25072541-25072560 Msa0064110:intron 35.0%
GTAATTGGCAATTCCTTCTT+GGG + chr1_2:25072542-25072561 Msa0064110:intron 35.0%
CTGATCCAACCAAAACAAAA+GGG - chr1_2:25072622-25072641 None:intergenic 35.0%
ATCAGCTTCTTGTGCATTAA+TGG + chr1_2:25072637-25072656 Msa0064110:intron 35.0%
TGCATTAATGGAACTTGAGT+GGG + chr1_2:25072649-25072668 Msa0064110:intron 35.0%
GGTAAATTGAAAAGACGCAT+TGG + chr1_2:25073024-25073043 Msa0064110:CDS 35.0%
AAATACCTTTCACCAGGAAT+AGG - chr1_2:25073102-25073121 None:intergenic 35.0%
AACAGTAAATACCTTTCACC+AGG - chr1_2:25073108-25073127 None:intergenic 35.0%
! AGGAAAAGTATGAGAAAGCA+AGG + chr1_2:25073352-25073371 Msa0064110:CDS 35.0%
! GGAAAAGTATGAGAAAGCAA+GGG + chr1_2:25073353-25073372 Msa0064110:CDS 35.0%
AATTCTGCACCCAAATGTTA+AGG - chr1_2:25073482-25073501 None:intergenic 35.0%
TATATGTTATCTAGGGAAGG+AGG - chr1_2:25073675-25073694 None:intergenic 35.0%
TATGCTAAATACTTGGAAGG+TGG + chr1_2:25073774-25073793 Msa0064110:intron 35.0%
! AGATAGGAAAGGTATATGCT+TGG - chr1_2:25073995-25074014 None:intergenic 35.0%
!! CTTCATTGCGTTTTATTGTC+TGG + chr1_2:25074015-25074034 Msa0064110:intron 35.0%
! ATAAACCAATTTAAGACCGG+AGG - chr1_2:25074228-25074247 None:intergenic 35.0%
ATTAAACCAGCAAGGAATCA+CGG - chr1_2:25074284-25074303 None:intergenic 35.0%
! TTAATGCAGTTTGACTTCCT+TGG + chr1_2:25074299-25074318 Msa0064110:intron 35.0%
TCCTTGGTAAAGATTCTATC+AGG + chr1_2:25074315-25074334 Msa0064110:CDS 35.0%
ACCTGATAGAATCTTTACCA+AGG - chr1_2:25074319-25074338 None:intergenic 35.0%
CAGGTATGAAAATACAGTTG+AGG + chr1_2:25074334-25074353 Msa0064110:CDS 35.0%
GTATGAAAATACAGTTGAGG+TGG + chr1_2:25074337-25074356 Msa0064110:CDS 35.0%
AAAATGGCATTGTAAACAGG+AGG - chr1_2:25074365-25074384 None:intergenic 35.0%
!!! GCCATTTTGAAGTTCCAAAA+AGG + chr1_2:25074377-25074396 Msa0064110:CDS 35.0%
TGTCTGAGCACTAATTTCAA+AGG - chr1_2:25074624-25074643 None:intergenic 35.0%
ACACAGACACAAATGACAAA+GGG - chr1_2:25074712-25074731 None:intergenic 35.0%
! TAATCAAATTCTAGAGGTGG+CGG - chr1_2:25074754-25074773 None:intergenic 35.0%
! TCCTAATCAAATTCTAGAGG+TGG - chr1_2:25074757-25074776 None:intergenic 35.0%
CTCTCCTAATCAAATTCTAG+AGG - chr1_2:25074760-25074779 None:intergenic 35.0%
CTATAATCAGGCAAACAAAC+AGG + chr1_2:25074991-25075010 Msa0064110:CDS 35.0%
CAATCTGTGCACATTAACAA+AGG - chr1_2:25075033-25075052 None:intergenic 35.0%
CAAATGATTGCAACCTGTTA+TGG - chr1_2:25075100-25075119 None:intergenic 35.0%
TGAGAAATTTATCCACACCA+TGG - chr1_2:25075226-25075245 None:intergenic 35.0%
GTGGATAAATTTCTCATCAC+TGG + chr1_2:25075230-25075249 Msa0064110:intron 35.0%
TGCTGACACTTTGTAATTGT+AGG + chr1_2:25075297-25075316 Msa0064110:intron 35.0%
AAAGCTGTATATTACGCTTC+AGG - chr1_2:25075403-25075422 None:intergenic 35.0%
TCACAATCACACATTACACT+TGG - chr1_2:25075458-25075477 None:intergenic 35.0%
GATTTAAAAACTGTGGCACT+TGG + chr1_2:25075564-25075583 Msa0064110:CDS 35.0%
! GATTACTAGTCTGATTCTGA+TGG - chr1_2:25075858-25075877 None:intergenic 35.0%
TTACGTATATATAGAACCCG+AGG + chr1_2:25076013-25076032 Msa0064110:intron 35.0%
TACGTATATATAGAACCCGA+GGG + chr1_2:25076014-25076033 Msa0064110:intron 35.0%
! GATTTTCAGTAAAACACTGC+TGG + chr1_2:25076172-25076191 Msa0064110:intron 35.0%
TTTGACAGTCCATGAAGAAA+GGG - chr1_2:25076423-25076442 None:intergenic 35.0%
GTGAAAACCATGGTTAAATG+TGG + chr1_2:25076464-25076483 Msa0064110:three_prime_UTR 35.0%
!! TTTGATGAAGTTCAGGTTGC+CGG - chr1_2:25067676-25067695 None:intergenic 40.0%
GATAGAGATGAAGATGAGTG+AGG - chr1_2:25067783-25067802 None:intergenic 40.0%
TCCCCATAGGAAGATTTGAT+CGG + chr1_2:25068208-25068227 Msa0064110:intron 40.0%
TCCCGATCAAATCTTCCTAT+GGG - chr1_2:25068213-25068232 None:intergenic 40.0%
TTCCCGATCAAATCTTCCTA+TGG - chr1_2:25068214-25068233 None:intergenic 40.0%
GAAAACCCTAGTTCGATTCT+GGG + chr1_2:25068231-25068250 Msa0064110:intron 40.0%
ATTCTGGGTGGAACAATTCT+TGG + chr1_2:25068246-25068265 Msa0064110:intron 40.0%
TGATAATCCAGAGTTTGGAC+AGG - chr1_2:25068289-25068308 None:intergenic 40.0%
TGTCCAAACTCTGGATTATC+AGG + chr1_2:25068288-25068307 Msa0064110:intron 40.0%
GTCCAAACTCTGGATTATCA+GGG + chr1_2:25068289-25068308 Msa0064110:intron 40.0%
TCCAAACTCTGGATTATCAG+GGG + chr1_2:25068290-25068309 Msa0064110:intron 40.0%
CACAAACACAGAAGGAAGAT+TGG - chr1_2:25068359-25068378 None:intergenic 40.0%
CAATCTTCCTTCTGTGTTTG+TGG + chr1_2:25068357-25068376 Msa0064110:intron 40.0%
CCCAAATGCTAAAATGCCTA+AGG - chr1_2:25068489-25068508 None:intergenic 40.0%
GACAGAGCATGTGTATAAGT+CGG - chr1_2:25068675-25068694 None:intergenic 40.0%
AACAACACCACCAAATGCTA+GGG - chr1_2:25068828-25068847 None:intergenic 40.0%
!! TTTGGTGGTGTTGTTGATTG+TGG + chr1_2:25068833-25068852 Msa0064110:intron 40.0%
! GTGTTGTTGATTGTGGATAG+TGG + chr1_2:25068840-25068859 Msa0064110:intron 40.0%
!! TTGTGGATAGTGGAAAACAG+AGG + chr1_2:25068850-25068869 Msa0064110:intron 40.0%
CCGAATCAGACGAAATGTTA+GGG - chr1_2:25068923-25068942 None:intergenic 40.0%
CCCTAACATTTCGTCTGATT+CGG + chr1_2:25068920-25068939 Msa0064110:intron 40.0%
ACCGAATCAGACGAAATGTT+AGG - chr1_2:25068924-25068943 None:intergenic 40.0%
!!! TGGGTGTTCTTTTTGGTTCA+TGG + chr1_2:25068983-25069002 Msa0064110:intron 40.0%
!!! GGGTGTTCTTTTTGGTTCAT+GGG + chr1_2:25068984-25069003 Msa0064110:intron 40.0%
!!! GGTGTTCTTTTTGGTTCATG+GGG + chr1_2:25068985-25069004 Msa0064110:intron 40.0%
CCACAGCTATTTGTCAACTA+TGG - chr1_2:25069273-25069292 None:intergenic 40.0%
CCATAGTTGACAAATAGCTG+TGG + chr1_2:25069270-25069289 Msa0064110:five_prime_UTR 40.0%
TAGTTGACAAATAGCTGTGG+AGG + chr1_2:25069273-25069292 Msa0064110:five_prime_UTR 40.0%
TCAACTTCTCATAGTCACGA+TGG + chr1_2:25069406-25069425 Msa0064110:CDS 40.0%
!! CAAAGTTCTAGCTCACAGAA+CGG + chr1_2:25069472-25069491 Msa0064110:CDS 40.0%
TATACCCACAGAAGATTCCA+CGG - chr1_2:25069533-25069552 None:intergenic 40.0%
TCCCGTTCATGTTCATGTTA+AGG + chr1_2:25069663-25069682 Msa0064110:CDS 40.0%
CGTTCATGTTCATGTTAAGG+AGG + chr1_2:25069666-25069685 Msa0064110:CDS 40.0%
ATCTTCAACCTAGCACTCAA+TGG - chr1_2:25069760-25069779 None:intergenic 40.0%
!! TGAGATTTGTTGACAACAGC+AGG - chr1_2:25069856-25069875 None:intergenic 40.0%
ATATTCCTTTGTCAGCAAGG+CGG + chr1_2:25069893-25069912 Msa0064110:CDS 40.0%
TAGCATTAATTGACGGAGCT+GGG - chr1_2:25070125-25070144 None:intergenic 40.0%
TTAGCATTAATTGACGGAGC+TGG - chr1_2:25070126-25070145 None:intergenic 40.0%
! TGGACTACTTTGGTTCACAA+TGG + chr1_2:25070408-25070427 Msa0064110:CDS 40.0%
! ATAGAGCATCTTTACCCCAT+GGG - chr1_2:25070460-25070479 None:intergenic 40.0%
! TATAGAGCATCTTTACCCCA+TGG - chr1_2:25070461-25070480 None:intergenic 40.0%
TGGGGTAAAGATGCTCTATA+AGG + chr1_2:25070461-25070480 Msa0064110:CDS 40.0%
GGGGTAAAGATGCTCTATAA+GGG + chr1_2:25070462-25070481 Msa0064110:CDS 40.0%
GGGTAAAGATGCTCTATAAG+GGG + chr1_2:25070463-25070482 Msa0064110:CDS 40.0%
!! TCACTGTTTTGGGTGACTTT+TGG + chr1_2:25070546-25070565 Msa0064110:intron 40.0%
ACATTCATGATGTCCAGTCA+TGG + chr1_2:25070703-25070722 Msa0064110:intron 40.0%
CATTCATGATGTCCAGTCAT+GGG + chr1_2:25070704-25070723 Msa0064110:intron 40.0%
!!! CCTTACATGTTGGTTTTGTG+GGG + chr1_2:25070815-25070834 Msa0064110:intron 40.0%
CCACATTATATGCAGTCATG+CGG + chr1_2:25070991-25071010 Msa0064110:CDS 40.0%
CACATTATATGCAGTCATGC+GGG + chr1_2:25070992-25071011 Msa0064110:CDS 40.0%
! AGGAAAACTTTTGGACTGAC+TGG + chr1_2:25071045-25071064 Msa0064110:CDS 40.0%
! AAACTTTTGGACTGACTGGA+AGG + chr1_2:25071049-25071068 Msa0064110:CDS 40.0%
ACTGACTGGAAGGTGATATT+GGG + chr1_2:25071059-25071078 Msa0064110:CDS 40.0%
!! TGGTTGGTTTAGTTTCTCTC+CGG + chr1_2:25071320-25071339 Msa0064110:intron 40.0%
CGAACTTGACAACTATGATC+CGG - chr1_2:25071342-25071361 None:intergenic 40.0%
CCTAATATCATCATACGGCA+CGG + chr1_2:25071572-25071591 Msa0064110:intron 40.0%
! CAATATCGTTTTCCCACTTC+TGG + chr1_2:25071605-25071624 Msa0064110:intron 40.0%
!! GAAAGGTTGTTTTCCAGAAG+TGG - chr1_2:25071621-25071640 None:intergenic 40.0%
!! CTGTGATTCCCACTGTTTTT+GGG - chr1_2:25071669-25071688 None:intergenic 40.0%
! TCTGTGATTCCCACTGTTTT+TGG - chr1_2:25071670-25071689 None:intergenic 40.0%
CAACCTTCCAGAATAGACAA+TGG + chr1_2:25071830-25071849 Msa0064110:CDS 40.0%
AACCCATTGTCTATTCTGGA+AGG - chr1_2:25071836-25071855 None:intergenic 40.0%
ATATTCCAGGGCAAACTAGA+GGG - chr1_2:25071877-25071896 None:intergenic 40.0%
CCAAATCCAACCATATTCCA+GGG - chr1_2:25071889-25071908 None:intergenic 40.0%
GACTGGTAAAATTGCAAGCT+TGG - chr1_2:25071954-25071973 None:intergenic 40.0%
CAACTCAGAACTCGTTATGT+TGG - chr1_2:25071977-25071996 None:intergenic 40.0%
!! CAACATAACGAGTTCTGAGT+TGG + chr1_2:25071975-25071994 Msa0064110:intron 40.0%
! GGATTTGTTCCGGTTAATAC+AGG + chr1_2:25072186-25072205 Msa0064110:intron 40.0%
CCTGATAAAAACGAGAGAAG+AGG - chr1_2:25072319-25072338 None:intergenic 40.0%
!! CCTCTTCTCTCGTTTTTATC+AGG + chr1_2:25072316-25072335 Msa0064110:intron 40.0%
! GTTTCATTTTCTCCTCCCTT+AGG - chr1_2:25072352-25072371 None:intergenic 40.0%
GGAGGAGAAAATGAAACAAG+AGG + chr1_2:25072355-25072374 Msa0064110:CDS 40.0%
! TACATGTGGGCTATTGTTGA+TGG + chr1_2:25072383-25072402 Msa0064110:CDS 40.0%
CAAGTTTGGGCAAAGAAAGA+GGG - chr1_2:25072436-25072455 None:intergenic 40.0%
ACAAGTTTGGGCAAAGAAAG+AGG - chr1_2:25072437-25072456 None:intergenic 40.0%
GCTGATCCAACCAAAACAAA+AGG - chr1_2:25072623-25072642 None:intergenic 40.0%
GTGCATTAATGGAACTTGAG+TGG + chr1_2:25072648-25072667 Msa0064110:intron 40.0%
!!! AATTTTAGAGCTGAACCACC+AGG + chr1_2:25072813-25072832 Msa0064110:CDS 40.0%
GGAATAGGACATTCAGGAAT+TGG - chr1_2:25073087-25073106 None:intergenic 40.0%
ATTCCTGAATGTCCTATTCC+TGG + chr1_2:25073087-25073106 Msa0064110:CDS 40.0%
AATGTCCTATTCCTGGTGAA+AGG + chr1_2:25073094-25073113 Msa0064110:CDS 40.0%
! CACACTGTTTTCAATCCTCT+TGG - chr1_2:25073908-25073927 None:intergenic 40.0%
AGTGTAACAGTTCCATCTCA+TGG + chr1_2:25073954-25073973 Msa0064110:intron 40.0%
ACGCAATGAAGAGATAGGAA+AGG - chr1_2:25074006-25074025 None:intergenic 40.0%
GTAGAAAATGTGACTGCAGA+AGG + chr1_2:25074140-25074159 Msa0064110:CDS 40.0%
! AGAAGGTGACAACAAGTTGA+AGG + chr1_2:25074157-25074176 Msa0064110:CDS 40.0%
! TTGTTTGTCCTTTTTGCCTC+CGG + chr1_2:25074209-25074228 Msa0064110:intron 40.0%
! ATTTAAGACCGGAGGCAAAA+AGG - chr1_2:25074220-25074239 None:intergenic 40.0%
! TTTTGCCTCCGGTCTTAAAT+TGG + chr1_2:25074220-25074239 Msa0064110:intron 40.0%
CAAACTGCATTAAACCAGCA+AGG - chr1_2:25074292-25074311 None:intergenic 40.0%
CTTAACGACCTCAGTCTAAT+AGG - chr1_2:25074434-25074453 None:intergenic 40.0%
ATCAGGTAAAAAACCTAGCG+AGG + chr1_2:25074472-25074491 Msa0064110:intron 40.0%
TTGTCAAAAAGTTCCTCGCT+AGG - chr1_2:25074488-25074507 None:intergenic 40.0%
!! AAGACTTTTGCTGTCAGGTT+GGG - chr1_2:25074554-25074573 None:intergenic 40.0%
CACACAGACACAAATGACAA+AGG - chr1_2:25074713-25074732 None:intergenic 40.0%
! CTTTGTCATTTGTGTCTGTG+TGG + chr1_2:25074711-25074730 Msa0064110:intron 40.0%
! AATCAAATTCTAGAGGTGGC+GGG - chr1_2:25074753-25074772 None:intergenic 40.0%
!! GCCACCTCTAGAATTTGATT+AGG + chr1_2:25074753-25074772 Msa0064110:intron 40.0%
!! CGTGCTGTTTCAAAATCTCA+CGG + chr1_2:25075130-25075149 Msa0064110:CDS 40.0%
AGAATTTGGAAACCATGGTG+TGG + chr1_2:25075211-25075230 Msa0064110:intron 40.0%
GTAATTGTAGGCTCTTTCGA+AGG + chr1_2:25075309-25075328 Msa0064110:intron 40.0%
AGCTGAAAACAGATTACGAC+AGG + chr1_2:25075332-25075351 Msa0064110:CDS 40.0%
GCTGAAAACAGATTACGACA+GGG + chr1_2:25075333-25075352 Msa0064110:CDS 40.0%
GATTACGACAGGGCAAAAAA+AGG + chr1_2:25075343-25075362 Msa0064110:CDS 40.0%
! TGTCACCTCTAAAGACCAAA+CGG + chr1_2:25075368-25075387 Msa0064110:CDS 40.0%
! AAGTTCCGTTTGGTCTTTAG+AGG - chr1_2:25075376-25075395 None:intergenic 40.0%
TCTAAAGACCAAACGGAACT+TGG + chr1_2:25075375-25075394 Msa0064110:CDS 40.0%
GGGATCTAGGTAGTTTATCT+TGG - chr1_2:25075595-25075614 None:intergenic 40.0%
AGATAAACTACCTAGATCCC+AGG + chr1_2:25075595-25075614 Msa0064110:CDS 40.0%
AGGTTCCTATTGAAAAGGTC+TGG + chr1_2:25075646-25075665 Msa0064110:intron 40.0%
! GAAGTCCAGACCTTTTCAAT+AGG - chr1_2:25075654-25075673 None:intergenic 40.0%
!! TTGCTTATTTTCCGGAAGCT+AGG + chr1_2:25075825-25075844 Msa0064110:intron 40.0%
GGTATATGTTATACTCCCTC+GGG - chr1_2:25076032-25076051 None:intergenic 40.0%
CGGTATATGTTATACTCCCT+CGG - chr1_2:25076033-25076052 None:intergenic 40.0%
TGGGGGACTACATCAAAAAA+CGG - chr1_2:25076053-25076072 None:intergenic 40.0%
!!! AGTCCCCCAAATGTTGTTTT+TGG + chr1_2:25076064-25076083 Msa0064110:intron 40.0%
! ACTGCTGGAAAAGTTTGCTT+GGG + chr1_2:25076187-25076206 Msa0064110:CDS 40.0%
TTGACAGTCCATGAAGAAAG+GGG - chr1_2:25076422-25076441 None:intergenic 40.0%
GTTTGACAGTCCATGAAGAA+AGG - chr1_2:25076424-25076443 None:intergenic 40.0%
GTGGATAATGAGGCAAAGTT+TGG + chr1_2:25076483-25076502 Msa0064110:three_prime_UTR 40.0%
AGAACGAGGTTGAGATTGTG+TGG - chr1_2:25067757-25067776 None:intergenic 45.0%
TTGGTTAATGAGCTCCCCAT+AGG + chr1_2:25068195-25068214 Msa0064110:intron 45.0%
CCCGATCAAATCTTCCTATG+GGG - chr1_2:25068212-25068231 None:intergenic 45.0%
CCCCATAGGAAGATTTGATC+GGG + chr1_2:25068209-25068228 Msa0064110:intron 45.0%
GGAAAACCCTAGTTCGATTC+TGG + chr1_2:25068230-25068249 Msa0064110:intron 45.0%
TTCCACCCAGAATCGAACTA+GGG - chr1_2:25068239-25068258 None:intergenic 45.0%
CTTATCTCCTGTCCAAACTC+TGG + chr1_2:25068279-25068298 Msa0064110:intron 45.0%
CCAAACTCTGGATTATCAGG+GGG + chr1_2:25068291-25068310 Msa0064110:intron 45.0%
TTGTAAGCCCTAGCATTTGG+TGG + chr1_2:25068818-25068837 Msa0064110:intron 45.0%
CAACAACACCACCAAATGCT+AGG - chr1_2:25068829-25068848 None:intergenic 45.0%
TAATCACAACATGCTCTGCG+TGG - chr1_2:25069236-25069255 None:intergenic 45.0%
CTTCTCATAGTCACGATGGA+CGG + chr1_2:25069410-25069429 Msa0064110:CDS 45.0%
GAACTTTGGCCATTTGCAGA+AGG - chr1_2:25069460-25069479 None:intergenic 45.0%
CGTTCTGTGAGCTAGAACTT+TGG - chr1_2:25069474-25069493 None:intergenic 45.0%
TGTCTCAACCTCAACCTCTA+AGG + chr1_2:25069501-25069520 Msa0064110:CDS 45.0%
TGAAGATTCCGAAGACGAGA+TGG + chr1_2:25069726-25069745 Msa0064110:CDS 45.0%
GTTCAGAAAGGACAGCAACA+TGG + chr1_2:25069991-25070010 Msa0064110:CDS 45.0%
CTCTTAACAGGCAGTGTAGA+CGG - chr1_2:25070045-25070064 None:intergenic 45.0%
ATCGGTGAAATCTGAACCGA+AGG + chr1_2:25070152-25070171 Msa0064110:CDS 45.0%
GAAATCTGAACCGAAGGTTG+CGG + chr1_2:25070158-25070177 Msa0064110:CDS 45.0%
ACTAAACTTCCTCCAAGCTC+CGG + chr1_2:25070369-25070388 Msa0064110:CDS 45.0%
!!! CCATTTTTTCTGCCCATCAC+CGG - chr1_2:25070391-25070410 None:intergenic 45.0%
! TAGAGCATCTTTACCCCATG+GGG - chr1_2:25070459-25070478 None:intergenic 45.0%
! ACATCTAATCTGAGACCCTC+AGG - chr1_2:25070751-25070770 None:intergenic 45.0%
CCCCACAAAACCAACATGTA+AGG - chr1_2:25070818-25070837 None:intergenic 45.0%
CCGCATGACTGCATATAATG+TGG - chr1_2:25070994-25071013 None:intergenic 45.0%
GACTGACTGGAAGGTGATAT+TGG + chr1_2:25071058-25071077 Msa0064110:CDS 45.0%
CCGTGCCGTATGATGATATT+AGG - chr1_2:25071575-25071594 None:intergenic 45.0%
TGACGACAACCCAAAAACAG+TGG + chr1_2:25071657-25071676 Msa0064110:intron 45.0%
GACGACAACCCAAAAACAGT+GGG + chr1_2:25071658-25071677 Msa0064110:intron 45.0%
CATATTCCAGGGCAAACTAG+AGG - chr1_2:25071878-25071897 None:intergenic 45.0%
! CTCTAGTTTGCCCTGGAATA+TGG + chr1_2:25071876-25071895 Msa0064110:intron 45.0%
AGTTTGCCCTGGAATATGGT+TGG + chr1_2:25071880-25071899 Msa0064110:intron 45.0%
CCCTGGAATATGGTTGGATT+TGG + chr1_2:25071886-25071905 Msa0064110:intron 45.0%
GCCAAATCCAACCATATTCC+AGG - chr1_2:25071890-25071909 None:intergenic 45.0%
! TTGGATTTGGCTTCTCAGCA+GGG + chr1_2:25071899-25071918 Msa0064110:intron 45.0%
AGAACTCGTTATGTTGGGAC+TGG - chr1_2:25071971-25071990 None:intergenic 45.0%
ATCAGGAAAAGAAGGCCCTA+AGG + chr1_2:25072333-25072352 Msa0064110:intron 45.0%
TCAGGAAAAGAAGGCCCTAA+GGG + chr1_2:25072334-25072353 Msa0064110:intron 45.0%
TTGGCAATTCCTTCTTGGGA+AGG + chr1_2:25072546-25072565 Msa0064110:intron 45.0%
TGGCAATTCCTTCTTGGGAA+GGG + chr1_2:25072547-25072566 Msa0064110:intron 45.0%
TCACCAGGAATAGGACATTC+AGG - chr1_2:25073093-25073112 None:intergenic 45.0%
! ATTTTTGTGCTCTTGGCAGC+TGG + chr1_2:25073208-25073227 Msa0064110:intron 45.0%
CAGTTACTTGGTTGGCGTAT+TGG + chr1_2:25073253-25073272 Msa0064110:CDS 45.0%
! TTCTGGGAGCTAGTAGTTCT+TGG + chr1_2:25073313-25073332 Msa0064110:CDS 45.0%
GGAGCTAGTAGTTCTTGGAA+GGG + chr1_2:25073318-25073337 Msa0064110:CDS 45.0%
GAGCTAGTAGTTCTTGGAAG+GGG + chr1_2:25073319-25073338 Msa0064110:CDS 45.0%
TAATGACCGTGATTCCTTGC+TGG + chr1_2:25074275-25074294 Msa0064110:intron 45.0%
! CGAGGAACTTTTTGACAAGC+TGG + chr1_2:25074490-25074509 Msa0064110:CDS 45.0%
!! GAAGACTTTTGCTGTCAGGT+TGG - chr1_2:25074555-25074574 None:intergenic 45.0%
!! TACGGAAGACTTTTGCTGTC+AGG - chr1_2:25074559-25074578 None:intergenic 45.0%
TGTCTGTGTGGCGTTAATGT+TGG + chr1_2:25074723-25074742 Msa0064110:intron 45.0%
! ATCAAATTCTAGAGGTGGCG+GGG - chr1_2:25074752-25074771 None:intergenic 45.0%
CAACTGATATCCTGGGATCT+AGG - chr1_2:25075608-25075627 None:intergenic 45.0%
GCACGAGGTTCCTATTGAAA+AGG + chr1_2:25075641-25075660 Msa0064110:CDS 45.0%
! CACTGCTGGAAAAGTTTGCT+TGG + chr1_2:25076186-25076205 Msa0064110:CDS 45.0%
! GGAAAAGTTTGCTTGGGCAA+TGG + chr1_2:25076193-25076212 Msa0064110:CDS 45.0%
! AGGTCTCAGAATCTGAAGTC+AGG - chr1_2:25076227-25076246 None:intergenic 45.0%
GAGTAGCTGAAGAACAGGTG+TGG - chr1_2:25067711-25067730 None:intergenic 50.0%
TTGGGGAGTAGCTGAAGAAC+AGG - chr1_2:25067716-25067735 None:intergenic 50.0%
CGAGGTTGAGATTGTGTGGT+CGG - chr1_2:25067753-25067772 None:intergenic 50.0%
GATGAGTGAGGAAGAGAACG+AGG - chr1_2:25067771-25067790 None:intergenic 50.0%
AACCCTAGTTCGATTCTGGG+TGG + chr1_2:25068234-25068253 Msa0064110:intron 50.0%
GTTCCACCCAGAATCGAACT+AGG - chr1_2:25068240-25068259 None:intergenic 50.0%
TGGGTGGAACAATTCTTGGC+CGG + chr1_2:25068250-25068269 Msa0064110:intron 50.0%
CCCCCTGATAATCCAGAGTT+TGG - chr1_2:25068294-25068313 None:intergenic 50.0%
ACTCTGGATTATCAGGGGGA+AGG + chr1_2:25068295-25068314 Msa0064110:intron 50.0%
CTCTGGATTATCAGGGGGAA+GGG + chr1_2:25068296-25068315 Msa0064110:intron 50.0%
CAAATAGCTGTGGAGGCTTG+TGG + chr1_2:25069280-25069299 Msa0064110:five_prime_UTR 50.0%
! ATTTGCAGAAGGCACGTCAG+GGG - chr1_2:25069449-25069468 None:intergenic 50.0%
! CATTTGCAGAAGGCACGTCA+GGG - chr1_2:25069450-25069469 None:intergenic 50.0%
!! TTCTAGCTCACAGAACGGCA+AGG + chr1_2:25069477-25069496 Msa0064110:CDS 50.0%
ATCTGCCGTGGAATCTTCTG+TGG + chr1_2:25069525-25069544 Msa0064110:CDS 50.0%
TCTGCCGTGGAATCTTCTGT+GGG + chr1_2:25069526-25069545 Msa0064110:CDS 50.0%
CAGCAACATGGCTCCAATGT+TGG + chr1_2:25070003-25070022 Msa0064110:CDS 50.0%
!! CCGGTGATGGGCAGAAAAAA+TGG + chr1_2:25070388-25070407 Msa0064110:CDS 50.0%
TTTACCCCATGGGGCTTGTA+AGG - chr1_2:25070450-25070469 None:intergenic 50.0%
GATGCTCTATAAGGGGAAGC+CGG + chr1_2:25070470-25070489 Msa0064110:CDS 50.0%
TGTTCAGGGGTCAAAGTCAC+CGG - chr1_2:25070492-25070511 None:intergenic 50.0%
GACTTTGACCCCTGAACAAG+AGG + chr1_2:25070494-25070513 Msa0064110:CDS 50.0%
TTTGACCCCTGAACAAGAGG+AGG + chr1_2:25070497-25070516 Msa0064110:CDS 50.0%
ACCCTACCTCCTCTTGTTCA+GGG - chr1_2:25070506-25070525 None:intergenic 50.0%
AACCCTACCTCCTCTTGTTC+AGG - chr1_2:25070507-25070526 None:intergenic 50.0%
ACTTCACTTGAGTGCCACCT+GGG - chr1_2:25071709-25071728 None:intergenic 50.0%
AACTTCACTTGAGTGCCACC+TGG - chr1_2:25071710-25071729 None:intergenic 50.0%
GCGACTGCAAACTGAATGCT+TGG - chr1_2:25071740-25071759 None:intergenic 50.0%
!! CTTTTCCCTCTAGTTTGCCC+TGG + chr1_2:25071869-25071888 Msa0064110:intron 50.0%
! GTTGGATTTGGCTTCTCAGC+AGG + chr1_2:25071898-25071917 Msa0064110:intron 50.0%
! TGGATTTGGCTTCTCAGCAG+GGG + chr1_2:25071900-25071919 Msa0064110:intron 50.0%
!! ACGAGTTCTGAGTTGGGTTC+AGG + chr1_2:25071982-25072001 Msa0064110:intron 50.0%
AGCGGTTCACAGCACAATGT+GGG + chr1_2:25072478-25072497 Msa0064110:intron 50.0%
TCTCTAGTCCCTTCCCAAGA+AGG - chr1_2:25072558-25072577 None:intergenic 50.0%
GGGAGCTAGTAGTTCTTGGA+AGG + chr1_2:25073317-25073336 Msa0064110:CDS 50.0%
!! TGAGAAAGCAAGGGCGTTGA+AGG + chr1_2:25073362-25073381 Msa0064110:CDS 50.0%
!! GACAAACTAGCTTTGAGGGC+TGG + chr1_2:25073591-25073610 Msa0064110:CDS 50.0%
! TTTGAGGGCTGGCAATGAGA+AGG + chr1_2:25073602-25073621 Msa0064110:CDS 50.0%
TTCAGGAGCCAAGTTCCGTT+TGG - chr1_2:25075386-25075405 None:intergenic 50.0%
ATCCCAGGATATCAGTTGCC+TGG + chr1_2:25075610-25075629 Msa0064110:CDS 50.0%
CACCAGGCAACTGATATCCT+GGG - chr1_2:25075615-25075634 None:intergenic 50.0%
TATCAGTTGCCTGGTGCAAG+CGG + chr1_2:25075619-25075638 Msa0064110:CDS 50.0%
ATGGGAAGCAACCTAGCTTC+CGG - chr1_2:25075839-25075858 None:intergenic 50.0%
ATCCCTGTCCCCTTTCTTCA+TGG + chr1_2:25076411-25076430 Msa0064110:three_prime_UTR 50.0%
GTCCATGAAGAAAGGGGACA+GGG - chr1_2:25076416-25076435 None:intergenic 50.0%
AGTCCATGAAGAAAGGGGAC+AGG - chr1_2:25076417-25076436 None:intergenic 50.0%
GCTGAAGAACAGGTGTGGCA+CGG - chr1_2:25067706-25067725 None:intergenic 55.0%
GAGATTGTGTGGTCGGAGGA+GGG - chr1_2:25067746-25067765 None:intergenic 55.0%
TGAGATTGTGTGGTCGGAGG+AGG - chr1_2:25067747-25067766 None:intergenic 55.0%
GGTTGAGATTGTGTGGTCGG+AGG - chr1_2:25067750-25067769 None:intergenic 55.0%
! CCATTTGCAGAAGGCACGTC+AGG - chr1_2:25069451-25069470 None:intergenic 55.0%
CCTGACGTGCCTTCTGCAAA+TGG + chr1_2:25069448-25069467 Msa0064110:CDS 55.0%
GGCAGATGCCTTAGAGGTTG+AGG - chr1_2:25069512-25069531 None:intergenic 55.0%
!! AACCTCTAAGGCATCTGCCG+TGG + chr1_2:25069513-25069532 Msa0064110:CDS 55.0%
TTCCACGGCAGATGCCTTAG+AGG - chr1_2:25069518-25069537 None:intergenic 55.0%
ACCTATGTGAGGTCCCCTTC+AGG + chr1_2:25069583-25069602 Msa0064110:CDS 55.0%
TCCTGAAGGGGACCTCACAT+AGG - chr1_2:25069587-25069606 None:intergenic 55.0%
TGTAGCCGCCTTGCTGACAA+AGG - chr1_2:25069901-25069920 None:intergenic 55.0%
ATCTGAACCGAAGGTTGCGG+AGG + chr1_2:25070161-25070180 Msa0064110:CDS 55.0%
TCATCCACCTCCGCAACCTT+CGG - chr1_2:25070171-25070190 None:intergenic 55.0%
TTCCTCCAAGCTCCGGTGAT+GGG + chr1_2:25070376-25070395 Msa0064110:CDS 55.0%
CATGGGGCTTGTAAGGAGGT+GGG - chr1_2:25070443-25070462 None:intergenic 55.0%
CACCTCCTTACAAGCCCCAT+GGG + chr1_2:25070442-25070461 Msa0064110:CDS 55.0%
ACCTCCTTACAAGCCCCATG+GGG + chr1_2:25070443-25070462 Msa0064110:CDS 55.0%
ACCCCTGAACAAGAGGAGGT+AGG + chr1_2:25070501-25070520 Msa0064110:intron 55.0%
CCCTACCTCCTCTTGTTCAG+GGG - chr1_2:25070505-25070524 None:intergenic 55.0%
CCCCTGAACAAGAGGAGGTA+GGG + chr1_2:25070502-25070521 Msa0064110:intron 55.0%
ATGTCCAGTCATGGGCGTGA+GGG + chr1_2:25070712-25070731 Msa0064110:intron 55.0%
AACTTGTCCTGTGTCCTCCC+AGG + chr1_2:25071689-25071708 Msa0064110:intron 55.0%
GGAAAAGAAGGCCCTAAGGG+AGG + chr1_2:25072337-25072356 Msa0064110:intron 55.0%
CAGCGGTTCACAGCACAATG+TGG + chr1_2:25072477-25072496 Msa0064110:intron 55.0%
TTGTGCTCTTGGCAGCTGGA+AGG + chr1_2:25073212-25073231 Msa0064110:intron 55.0%
TTGGAAGGGGCAAAGCGACA+AGG + chr1_2:25073332-25073351 Msa0064110:CDS 55.0%
GACGAAGCTGCTGACACAGT+TGG + chr1_2:25074101-25074120 Msa0064110:CDS 55.0%
GCACCAGGCAACTGATATCC+TGG - chr1_2:25075616-25075635 None:intergenic 55.0%
TCGGAGGAGGGAAGGGAGTT+GGG - chr1_2:25067734-25067753 None:intergenic 60.0%
TGTGTGGTCGGAGGAGGGAA+GGG - chr1_2:25067741-25067760 None:intergenic 60.0%
TTGTGTGGTCGGAGGAGGGA+AGG - chr1_2:25067742-25067761 None:intergenic 60.0%
TGAACCGAAGGTTGCGGAGG+TGG + chr1_2:25070164-25070183 Msa0064110:CDS 60.0%
CTTCCTCCAAGCTCCGGTGA+TGG + chr1_2:25070375-25070394 Msa0064110:CDS 60.0%
TTCTGCCCATCACCGGAGCT+TGG - chr1_2:25070384-25070403 None:intergenic 60.0%
CCATGGGGCTTGTAAGGAGG+TGG - chr1_2:25070444-25070463 None:intergenic 60.0%
CCACCTCCTTACAAGCCCCA+TGG + chr1_2:25070441-25070460 Msa0064110:CDS 60.0%
ACCCCATGGGGCTTGTAAGG+AGG - chr1_2:25070447-25070466 None:intergenic 60.0%
GATGTCCAGTCATGGGCGTG+AGG + chr1_2:25070711-25070730 Msa0064110:intron 60.0%
! GGAGGTGTGTTGAGGCCTGA+GGG + chr1_2:25070733-25070752 Msa0064110:intron 60.0%
TTGTCCTGTGTCCTCCCAGG+TGG + chr1_2:25071692-25071711 Msa0064110:intron 60.0%
TCACTTGAGTGCCACCTGGG+AGG - chr1_2:25071706-25071725 None:intergenic 60.0%
GAACCACCAGGACTGTTCCG+TGG + chr1_2:25072825-25072844 Msa0064110:CDS 60.0%
TGGGATGCTCTCCACGTCCA+CGG - chr1_2:25072845-25072864 None:intergenic 60.0%
!! TGGACGTGGAGAGCATCCCA+AGG + chr1_2:25072845-25072864 Msa0064110:CDS 60.0%
CGGAGGAGGGAAGGGAGTTG+GGG - chr1_2:25067733-25067752 None:intergenic 65.0%
GTCGGAGGAGGGAAGGGAGT+TGG - chr1_2:25067735-25067754 None:intergenic 65.0%
TGCCCATCACCGGAGCTTGG+AGG - chr1_2:25070381-25070400 None:intergenic 65.0%
TCCAGTCATGGGCGTGAGGG+AGG + chr1_2:25070715-25070734 Msa0064110:intron 65.0%
ACCTCCCTCACGCCCATGAC+TGG - chr1_2:25070719-25070738 None:intergenic 65.0%
! GGCGTGAGGGAGGTGTGTTG+AGG + chr1_2:25070725-25070744 Msa0064110:intron 65.0%
! GGGAGGTGTGTTGAGGCCTG+AGG + chr1_2:25070732-25070751 Msa0064110:intron 65.0%
AGTGCCACCTGGGAGGACAC+AGG - chr1_2:25071699-25071718 None:intergenic 65.0%
CGTCCACGGAACAGTCCTGG+TGG - chr1_2:25072831-25072850 None:intergenic 65.0%
CCACGTCCACGGAACAGTCC+TGG - chr1_2:25072834-25072853 None:intergenic 65.0%
CCAGGACTGTTCCGTGGACG+TGG + chr1_2:25072831-25072850 Msa0064110:CDS 65.0%
!! AACCTCGTGCCGCTTGCACC+AGG - chr1_2:25075631-25075650 None:intergenic 65.0%
TGCCTGGTGCAAGCGGCACG+AGG + chr1_2:25075626-25075645 Msa0064110:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 25067634 25076560 25067634 ID=Msa0064110;Name=Msa0064110
chr1_2 mRNA 25067634 25076560 25067634 ID=Msa0064110-mRNA-1;Parent=Msa0064110;Name=Msa0064110-mRNA-1;_AED=0.12;_eAED=0.12;_QI=270|0.87|0.94|0.94|0.93|0.88|17|319|928
chr1_2 exon 25067634 25067831 25067634 ID=Msa0064110-mRNA-1:exon:8913;Parent=Msa0064110-mRNA-1
chr1_2 exon 25069241 25070518 25069241 ID=Msa0064110-mRNA-1:exon:8914;Parent=Msa0064110-mRNA-1
chr1_2 exon 25070987 25071181 25070987 ID=Msa0064110-mRNA-1:exon:8915;Parent=Msa0064110-mRNA-1
chr1_2 exon 25071791 25071862 25071791 ID=Msa0064110-mRNA-1:exon:8916;Parent=Msa0064110-mRNA-1
chr1_2 exon 25072338 25072418 25072338 ID=Msa0064110-mRNA-1:exon:8917;Parent=Msa0064110-mRNA-1
chr1_2 exon 25072807 25072866 25072807 ID=Msa0064110-mRNA-1:exon:8918;Parent=Msa0064110-mRNA-1
chr1_2 exon 25073021 25073115 25073021 ID=Msa0064110-mRNA-1:exon:8919;Parent=Msa0064110-mRNA-1
chr1_2 exon 25073227 25073383 25073227 ID=Msa0064110-mRNA-1:exon:8920;Parent=Msa0064110-mRNA-1
chr1_2 exon 25073498 25073623 25073498 ID=Msa0064110-mRNA-1:exon:8921;Parent=Msa0064110-mRNA-1
chr1_2 exon 25074095 25074178 25074095 ID=Msa0064110-mRNA-1:exon:8922;Parent=Msa0064110-mRNA-1
chr1_2 exon 25074308 25074398 25074308 ID=Msa0064110-mRNA-1:exon:8923;Parent=Msa0064110-mRNA-1
chr1_2 exon 25074477 25074610 25074477 ID=Msa0064110-mRNA-1:exon:8924;Parent=Msa0064110-mRNA-1
chr1_2 exon 25074944 25075012 25074944 ID=Msa0064110-mRNA-1:exon:8925;Parent=Msa0064110-mRNA-1
chr1_2 exon 25075106 25075195 25075106 ID=Msa0064110-mRNA-1:exon:8926;Parent=Msa0064110-mRNA-1
chr1_2 exon 25075319 25075407 25075319 ID=Msa0064110-mRNA-1:exon:8927;Parent=Msa0064110-mRNA-1
chr1_2 exon 25075494 25075662 25075494 ID=Msa0064110-mRNA-1:exon:8928;Parent=Msa0064110-mRNA-1
chr1_2 exon 25076173 25076560 25076173 ID=Msa0064110-mRNA-1:exon:8929;Parent=Msa0064110-mRNA-1
chr1_2 five_prime_UTR 25067634 25067831 25067634 ID=Msa0064110-mRNA-1:five_prime_utr;Parent=Msa0064110-mRNA-1
chr1_2 five_prime_UTR 25069241 25069312 25069241 ID=Msa0064110-mRNA-1:five_prime_utr;Parent=Msa0064110-mRNA-1
chr1_2 CDS 25069313 25070518 25069313 ID=Msa0064110-mRNA-1:cds;Parent=Msa0064110-mRNA-1
chr1_2 CDS 25070987 25071181 25070987 ID=Msa0064110-mRNA-1:cds;Parent=Msa0064110-mRNA-1
chr1_2 CDS 25071791 25071862 25071791 ID=Msa0064110-mRNA-1:cds;Parent=Msa0064110-mRNA-1
chr1_2 CDS 25072338 25072418 25072338 ID=Msa0064110-mRNA-1:cds;Parent=Msa0064110-mRNA-1
chr1_2 CDS 25072807 25072866 25072807 ID=Msa0064110-mRNA-1:cds;Parent=Msa0064110-mRNA-1
chr1_2 CDS 25073021 25073115 25073021 ID=Msa0064110-mRNA-1:cds;Parent=Msa0064110-mRNA-1
chr1_2 CDS 25073227 25073383 25073227 ID=Msa0064110-mRNA-1:cds;Parent=Msa0064110-mRNA-1
chr1_2 CDS 25073498 25073623 25073498 ID=Msa0064110-mRNA-1:cds;Parent=Msa0064110-mRNA-1
chr1_2 CDS 25074095 25074178 25074095 ID=Msa0064110-mRNA-1:cds;Parent=Msa0064110-mRNA-1
chr1_2 CDS 25074308 25074398 25074308 ID=Msa0064110-mRNA-1:cds;Parent=Msa0064110-mRNA-1
chr1_2 CDS 25074477 25074610 25074477 ID=Msa0064110-mRNA-1:cds;Parent=Msa0064110-mRNA-1
chr1_2 CDS 25074944 25075012 25074944 ID=Msa0064110-mRNA-1:cds;Parent=Msa0064110-mRNA-1
chr1_2 CDS 25075106 25075195 25075106 ID=Msa0064110-mRNA-1:cds;Parent=Msa0064110-mRNA-1
chr1_2 CDS 25075319 25075407 25075319 ID=Msa0064110-mRNA-1:cds;Parent=Msa0064110-mRNA-1
chr1_2 CDS 25075494 25075662 25075494 ID=Msa0064110-mRNA-1:cds;Parent=Msa0064110-mRNA-1
chr1_2 CDS 25076173 25076241 25076173 ID=Msa0064110-mRNA-1:cds;Parent=Msa0064110-mRNA-1
chr1_2 three_prime_UTR 25076242 25076560 25076242 ID=Msa0064110-mRNA-1:three_prime_utr;Parent=Msa0064110-mRNA-1
Gene Sequence

>Msa0064110

ATGGCGCACGAATTTGATGATGAAGATGGTCCAGTAATTTTTAAAAGGATTTCAGTGTCGAAGAGTACTCAATTGCATTCAGAAACAAGGAAGTCAACTTCTCATAGTCACGATGGACGGTCATTTAAAAAGACCCCTGACGTGCCTTCTGCAAATGGCCAAAGTTCTAGCTCACAGAACGGCAAGGTTGTCTCAACCTCAACCTCTAAGGCATCTGCCGTGGAATCTTCTGTGGGTATATCAAAAGCATCAACATCAACAAATCTCAAAACCTATGTGAGGTCCCCTTCAGGAAGTTCAAAATTTGCGTCATTTGGAAATAAAAAAGAGTCTCTTACAGAGAAGAAAGTTCCCGTTCATGTTCATGTTAAGGAGGAAGATAGTTCTAGGAAAAATGGTAAAGAAGAAAGTTGTGAAGATTCCGAAGACGAGATGGATAATATACCATTGAGTGCTAGGTTGAAGATGAAAGACGACAGTGCTAAGAAAACAACTCCTGTTGTTGTCAAGAAATCTCATGAAGATTCTAAGAAAACAACTCCTGCTGTTGTCAACAAATCTCACGAAGATTCTGATGATGATATTCCTTTGTCAGCAAGGCGGCTACAGAATAATAATAATTTGGGAAAATCTAGTAATAACAATGGTGGCTCTGATCATAAGAAACCACTTTCAAATGTTCAGAAAGGACAGCAACATGGCTCCAATGTTGGTATTAAACAAGAAAGGCCGTCTACACTGCCTGTTAAGAGACCACTAGATAAGACTGATTCCTTGCATTCTTCTGTTAAGAAATCAAAACTCTCAGACCCAGCTCCGTCAATTAATGCTAAACAGACATCGGTGAAATCTGAACCGAAGGTTGCGGAGGTGGATGATGATGATGATGATGTTCCTCTTTCCCAAAGAATGAATAAGCATGCCACATCAGTGAATAAATCATCTTCTGTGAAGAAGACGACAAACGTCACTAAAGTCAACAAGGCTTCTGCTCCATCTTTTAAGAAAAAGGCAAATTTCAAAAAACCAGGCAATAAATCAGAACAGTTCAAATCTACTAAACTTCCTCCAAGCTCCGGTGATGGGCAGAAAAAATGGACTACTTTGGTTCACAATGGTATCATCTTCCCACCTCCTTACAAGCCCCATGGGGTAAAGATGCTCTATAAGGGGAAGCCGGTGACTTTGACCCCTGAACAAGAGGAGGTTGCCACATTATATGCAGTCATGCGGGATACAGAATACATGCAAAAAGCAAAATTCAAGGAAAACTTTTGGACTGACTGGAAGGTGATATTGGGAAAAAATCATGTGATTCAGAATCTGGAAGATTGTGACTTTACACCGATTTATGATTGGTGCCAAATTGAAAAGGAGAAGAAGAAACAAATGAGCGCAGCATTTGTCAGCCTTGAGATTCTTTTTCCTTTTGTTATTTTACAACCTTCCAGAATAGACAATGGGTTAAATTTGGAAAAGAAGGCCCTAAGGGAGGAGAAAATGAAACAAGAGGAGAAATACATGTGGGCTATTGTTGATGGTGTTAAAGAGAAGGTTGGCAATTTTAGAGCTGAACCACCAGGACTGTTCCGTGGACGTGGAGAGCATCCCAAGATGGGTAAATTGAAAAGACGCATTGGTCCAAGTGATGTCGTAATTAATATTGGAAGGGATGCACCAATTCCTGAATGTCCTATTCCTGGTGAAAGCTGGAAGGAGATAAGACATGATAATACAGTTACTTGGTTGGCGTATTGGAATGACCCAATCAATAATAAGTTATTCAAATACGTGTTTCTGGGAGCTAGTAGTTCTTGGAAGGGGCAAAGCGACAAGGAAAAGTATGAGAAAGCAAGGGCGTTGAAGAATTATATAGAGAGAATTAGGGCGGCATATACGAAAGATTTCACGAGCAAAGATATTACAAAGCAGCAAATTGCTGTTGCTACTTATTTTATTGACAAACTAGCTTTGAGGGCTGGCAATGAGAAGGATGATGACGAAGCTGCTGACACAGTTGGTTGTTGCACATTAAAAGTAGAAAATGTGACTGCAGAAGGTGACAACAAGTTGAAGTTTGACTTCCTTGGTAAAGATTCTATCAGGTATGAAAATACAGTTGAGGTGGAGCCTCCTGTTTACAATGCCATTTTGAAGTTCCAAAAAGGTAAAAAACCTAGCGAGGAACTTTTTGACAAGCTGGATACAAGTACATTAAATAGTCATCTGAAGGAACTCATGCCCAACCTGACAGCAAAAGTCTTCCGTACATTCAATGCATCATTCACTTTGGATGATATGTTGAATAAGGATACTAAAGATGGAGATGTTGCAGAAAAAGTTCTTGTCTATAATCAGGCAAACAAACAGGTTGCAATCATTTGTAATCATCAACGTGCTGTTTCAAAATCTCACGGCACACAAATTTCAAAGTTGAATGAAAAGATTGATGAACTTAAGGCTCTTTCGAAGGAGCTGAAAACAGATTACGACAGGGCAAAAAAAGGAATGTCACCTCTAAAGACCAAACGGAACTTGGCTCCTGAAGCGATAAAGAAAAAGATGGATCAAACCAGCGCAAAAATTAAGAAAATGGAACGTGATATGATGACTAAAGAAGATTTAAAAACTGTGGCACTTGGCACGTCCAAGATAAACTACCTAGATCCCAGGATATCAGTTGCCTGGTGCAAGCGGCACGAGGTTCCTATTGAAAAGATTTTCAGTAAAACACTGCTGGAAAAGTTTGCTTGGGCAATGGATGTAGATCCTGACTTCAGATTCTGA
Protein sequence

>Msa0064110

MAHEFDDEDGPVIFKRISVSKSTQLHSETRKSTSHSHDGRSFKKTPDVPSANGQSSSSQNGKVVSTSTSKASAVESSVGISKASTSTNLKTYVRSPSGSSKFASFGNKKESLTEKKVPVHVHVKEEDSSRKNGKEESCEDSEDEMDNIPLSARLKMKDDSAKKTTPVVVKKSHEDSKKTTPAVVNKSHEDSDDDIPLSARRLQNNNNLGKSSNNNGGSDHKKPLSNVQKGQQHGSNVGIKQERPSTLPVKRPLDKTDSLHSSVKKSKLSDPAPSINAKQTSVKSEPKVAEVDDDDDDVPLSQRMNKHATSVNKSSSVKKTTNVTKVNKASAPSFKKKANFKKPGNKSEQFKSTKLPPSSGDGQKKWTTLVHNGIIFPPPYKPHGVKMLYKGKPVTLTPEQEEVATLYAVMRDTEYMQKAKFKENFWTDWKVILGKNHVIQNLEDCDFTPIYDWCQIEKEKKKQMSAAFVSLEILFPFVILQPSRIDNGLNLEKKALREEKMKQEEKYMWAIVDGVKEKVGNFRAEPPGLFRGRGEHPKMGKLKRRIGPSDVVINIGRDAPIPECPIPGESWKEIRHDNTVTWLAYWNDPINNKLFKYVFLGASSSWKGQSDKEKYEKARALKNYIERIRAAYTKDFTSKDITKQQIAVATYFIDKLALRAGNEKDDDEAADTVGCCTLKVENVTAEGDNKLKFDFLGKDSIRYENTVEVEPPVYNAILKFQKGKKPSEELFDKLDTSTLNSHLKELMPNLTAKVFRTFNASFTLDDMLNKDTKDGDVAEKVLVYNQANKQVAIICNHQRAVSKSHGTQISKLNEKIDELKALSKELKTDYDRAKKGMSPLKTKRNLAPEAIKKKMDQTSAKIKKMERDMMTKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFSKTLLEKFAWAMDVDPDFRF*