Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399160 | KEH27200.1 | 97.505 | 521 | 13 | 0 | 1 | 521 | 1 | 521 | 0.0 | 1064 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399160 | A0A072UMW0 | 97.505 | 521 | 13 | 0 | 1 | 521 | 1 | 521 | 0.0 | 1064 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0684500 | Msa1399160 | 0.812834 | 3.473345e-51 | -8.615850e-47 |
| Msa1108790 | Msa1399160 | 0.800025 | 1.749144e-48 | -8.615850e-47 |
| Msa0548620 | Msa1399160 | 0.816163 | 6.372690e-52 | -8.615850e-47 |
| Msa0900730 | Msa1399160 | 0.822913 | 1.836898e-53 | -8.615850e-47 |
| Msa0926340 | Msa1399160 | 0.847282 | 1.276086e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399160 | MtrunA17_Chr6g0486901 | 91.778 | 523 | 15 | 2 | 27 | 521 | 3 | 525 | 0.0 | 992 |
| Msa1399160 | MtrunA17_Chr8g0389871 | 77.519 | 516 | 116 | 0 | 4 | 519 | 1 | 516 | 0.0 | 861 |
| Msa1399160 | MtrunA17_Chr8g0389861 | 59.149 | 470 | 129 | 7 | 55 | 495 | 1 | 436 | 0.0 | 547 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399160 | AT2G19880.2 | 73.654 | 520 | 133 | 2 | 1 | 519 | 1 | 517 | 0.0 | 810 |
| Msa1399160 | AT2G19880.1 | 73.410 | 519 | 135 | 1 | 1 | 519 | 1 | 516 | 0.0 | 809 |
Find 124 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCAACTGATCTTAATTT+TGG | 0.142854 | tig0022333:-27531 | Msa1399160:CDS |
| ATTTGCTTAGTCTTAGCTTT+TGG | 0.183862 | tig0022333:-30157 | Msa1399160:CDS |
| GTGAACACAATCTCCATAAT+TGG | 0.204953 | tig0022333:-29714 | Msa1399160:CDS |
| GATTTACCATCTGGAAGTTT+AGG | 0.240624 | tig0022333:-28429 | Msa1399160:CDS |
| TCAGAATTCTCTTCTCCTTT+TGG | 0.243862 | tig0022333:-30882 | Msa1399160:CDS |
| ATTTCTCTCAATCTATTAAT+TGG | 0.244531 | tig0022333:-26043 | Msa1399160:CDS |
| TTTCTATTGTTAACTATAAC+TGG | 0.262552 | tig0022333:-26788 | Msa1399160:CDS |
| AGCACTACAGTTTCACTATA+AGG | 0.268141 | tig0022333:-27276 | Msa1399160:CDS |
| GTTTGTATTGCCATACATTA+TGG | 0.268751 | tig0022333:-27318 | Msa1399160:CDS |
| ATTTACCATCTGGAAGTTTA+GGG | 0.283503 | tig0022333:-28428 | Msa1399160:CDS |
| ATACCTGAGTCCTCCAATTA+TGG | 0.293207 | tig0022333:+29701 | None:intergenic |
| ACGCCATTCCGTGTATTTCT+TGG | 0.293850 | tig0022333:+25569 | Msa1399150:three_prime_UTR |
| GGCATAATTACTGTTACTTT+TGG | 0.301670 | tig0022333:+29751 | None:intergenic |
| GAGGAAACAAACATTTGTTT+TGG | 0.302949 | tig0022333:-27414 | Msa1399160:CDS |
| GTTCCACAGCCTTGTTCAAT+AGG | 0.305475 | tig0022333:-28074 | Msa1399160:intron |
| ACAGAAAATGACATAGAAAT+AGG | 0.314734 | tig0022333:-31055 | Msa1399160:five_prime_UTR |
| ATGCAGTTAACATCTCTATA+TGG | 0.320655 | tig0022333:-29593 | Msa1399160:intron |
| TGTTCACCAAACCCCTTTAG+AGG | 0.321880 | tig0022333:+29730 | None:intergenic |
| CCAGCCAAGTCTGTGAAAAC+TGG | 0.324887 | tig0022333:+25651 | Msa1399150:three_prime_UTR |
| GAGGAAATTGCCTACACTTC+TGG | 0.325062 | tig0022333:-27242 | Msa1399160:CDS |
| AAAGAGAGATAAGAAGAATA+AGG | 0.327477 | tig0022333:-29855 | Msa1399160:CDS |
| GAAGGAATCAAGAGAATCTA+AGG | 0.335564 | tig0022333:+30920 | None:intergenic |
| TGAGAACGAATTGCAGATAT+AGG | 0.345163 | tig0022333:+26065 | Msa1399150:three_prime_UTR |
| TTGGGTTTCGAAGGCTCGTC+AGG | 0.346305 | tig0022333:-25462 | Msa1399160:three_prime_UTR |
| TTGTAGTTATTCAGATCTCT+TGG | 0.360716 | tig0022333:+25542 | Msa1399150:three_prime_UTR |
| CTTGAGGTCTGCCTTGGTCC+TGG | 0.367170 | tig0022333:+25438 | Msa1399150:three_prime_UTR |
| TTAGTGAAACAAAATCGTTT+TGG | 0.372588 | tig0022333:-25505 | Msa1399160:three_prime_UTR |
| CAACAGATATTTATACAAAC+TGG | 0.383560 | tig0022333:-28462 | Msa1399160:intron |
| ACTGGAGCCATATCCTTGTT+TGG | 0.388189 | tig0022333:+25669 | Msa1399150:three_prime_UTR |
| CCGTTCACTGTTATTTGTCA+TGG | 0.389579 | tig0022333:-27343 | Msa1399160:CDS |
| GGGCTTCAGCTGCTTGTGTC+AGG | 0.391633 | tig0022333:-30132 | Msa1399160:intron |
| TACAAAGGCTTAAGTGAGTT+GGG | 0.394097 | tig0022333:-25480 | Msa1399160:three_prime_UTR |
| GCACTACAGTTTCACTATAA+GGG | 0.400260 | tig0022333:-27275 | Msa1399160:CDS |
| CGTTCACTGTTATTTGTCAT+GGG | 0.402189 | tig0022333:-27342 | Msa1399160:CDS |
| ACAGTAATTATGCCTCTAAA+GGG | 0.403158 | tig0022333:-29742 | Msa1399160:CDS |
| TCTCAATCTATTAATTGGTC+TGG | 0.404186 | tig0022333:-26038 | Msa1399160:CDS |
| GACTCAACCAAACAAGGATA+TGG | 0.406315 | tig0022333:-25676 | Msa1399160:CDS |
| AACAGTAATTATGCCTCTAA+AGG | 0.410626 | tig0022333:-29743 | Msa1399160:CDS |
| TATCCTCTTGATTTACCATC+TGG | 0.416747 | tig0022333:-28438 | Msa1399160:CDS |
| CGATCAACCATGTGGGAGAT+AGG | 0.421434 | tig0022333:+25387 | Msa1399150:three_prime_UTR |
| TGTAGTTATTCAGATCTCTT+GGG | 0.431677 | tig0022333:+25543 | Msa1399150:three_prime_UTR |
| AAGATTACTATCAGAATTTG+AGG | 0.432221 | tig0022333:-29507 | Msa1399160:intron |
| AGAAAAGGGTTTCCTTCAAA+AGG | 0.435386 | tig0022333:-25612 | Msa1399160:CDS |
| GAGAACGAATTGCAGATATA+GGG | 0.440054 | tig0022333:+26066 | Msa1399150:three_prime_UTR |
| CCTTCTCTCAGGGTTATCAC+TGG | 0.443034 | tig0022333:-26916 | Msa1399160:intron |
| TTCAAAGAATAACAGAAAGA+AGG | 0.452911 | tig0022333:-30966 | Msa1399160:five_prime_UTR |
| ATTATGCCTCTAAAGGGGTT+TGG | 0.453265 | tig0022333:-29736 | Msa1399160:CDS |
| ATAGAAAGAGGAGGTTCCTC+TGG | 0.454463 | tig0022333:+26804 | None:intergenic |
| TTCGAAGGCTCGTCAGGGCC+AGG | 0.456451 | tig0022333:-25456 | Msa1399160:three_prime_UTR |
| TGAACCATTGCCATAATGTA+TGG | 0.465949 | tig0022333:+27308 | None:intergenic |
| ATATTTGCTGTCTTTATCCA+TGG | 0.470720 | tig0022333:+28828 | None:intergenic |
| AGCCTACATCCTGGATCAAT+TGG | 0.471767 | tig0022333:-28781 | Msa1399160:CDS |
| AAGCTCAAGAAGAGTGCATA+TGG | 0.473573 | tig0022333:+26881 | None:intergenic |
| TGAACTTGAGCATTCCAATC+AGG | 0.475510 | tig0022333:-29782 | Msa1399160:CDS |
| AGATCAGTTGCAAGCGGGTG+AGG | 0.481446 | tig0022333:+27540 | None:intergenic |
| ATGACTCTTGCAGCCATAGC+TGG | 0.488562 | tig0022333:-27850 | Msa1399160:intron |
| ATGCTCCTTGAGGTCTGCCT+TGG | 0.492567 | tig0022333:+25432 | Msa1399150:three_prime_UTR |
| CTTGATACAGCATGGTAAGC+AGG | 0.492748 | tig0022333:+29527 | None:intergenic |
| ATACAAAGGCTTAAGTGAGT+TGG | 0.494076 | tig0022333:-25481 | Msa1399160:three_prime_UTR |
| ACAGGTACTGGAATTATTTG+AGG | 0.502463 | tig0022333:-27433 | Msa1399160:intron |
| TGGTGCACTCGCTCGTGAGA+TGG | 0.517702 | tig0022333:-28761 | Msa1399160:CDS |
| GCGAGTGCACCAATTGATCC+AGG | 0.527955 | tig0022333:+28772 | None:intergenic |
| TAGAAAGAGGAGGTTCCTCT+GGG | 0.529248 | tig0022333:+26805 | None:intergenic |
| TTGCATCTATGAATACCATA+TGG | 0.530535 | tig0022333:-28400 | Msa1399160:intron |
| TCAAAGAATAACAGAAAGAA+GGG | 0.535873 | tig0022333:-30965 | Msa1399160:five_prime_UTR |
| CAGGACCAAGGCAGACCTCA+AGG | 0.537760 | tig0022333:-25437 | Msa1399160:three_prime_UTR |
| GTAGTCTCAGAACTTCGAAA+TGG | 0.539131 | tig0022333:-27889 | Msa1399160:CDS |
| GGTATTCATTGCTATGTTGG+TGG | 0.540526 | tig0022333:-26102 | Msa1399160:CDS |
| GGGTGAGGAAAGACAGCGAC+TGG | 0.541222 | tig0022333:+27555 | None:intergenic |
| GCAGGTATTCATTGCTATGT+TGG | 0.542529 | tig0022333:-26105 | Msa1399160:intron |
| TTAAGTGAGTTGGGTTTCGA+AGG | 0.543611 | tig0022333:-25471 | Msa1399160:three_prime_UTR |
| ATTGCCATACATTATGGCAA+TGG | 0.548542 | tig0022333:-27312 | Msa1399160:CDS |
| GTCTCAGAACTTCGAAATGG+TGG | 0.551163 | tig0022333:-27886 | Msa1399160:CDS |
| GAGGCTAGGATAATTGTAGC+TGG | 0.552525 | tig0022333:-29381 | Msa1399160:CDS |
| TGTTCAATAGGATTTGCCAC+TGG | 0.556712 | tig0022333:-28062 | Msa1399160:CDS |
| ATAAGGAGAAGTATGCAGAA+TGG | 0.562928 | tig0022333:-29838 | Msa1399160:CDS |
| TCAATAGGATTTGCCACTGG+TGG | 0.565490 | tig0022333:-28059 | Msa1399160:CDS |
| GTTCACTGTTATTTGTCATG+GGG | 0.566659 | tig0022333:-27341 | Msa1399160:CDS |
| CTTCCAGATGGTAAATCAAG+AGG | 0.568638 | tig0022333:+28435 | None:intergenic |
| ATATATGCAGGGTTCTGTAG+AGG | 0.569292 | tig0022333:-29400 | Msa1399160:intron |
| TTTCAATGTGGAACTTGACA+AGG | 0.569660 | tig0022333:-26857 | Msa1399160:CDS |
| TATCAATTACTCACCAGCTA+TGG | 0.571387 | tig0022333:+27837 | None:intergenic |
| AACACAATCTCCATAATTGG+AGG | 0.573745 | tig0022333:-29711 | Msa1399160:CDS |
| GACAATTGAACAGGTTGGAG+TGG | 0.576476 | tig0022333:-28854 | Msa1399160:intron |
| TTCTTGAGCTTCTTTCAATG+TGG | 0.576638 | tig0022333:-26869 | Msa1399160:CDS |
| GATGATGTGAGCCTACATCC+TGG | 0.578008 | tig0022333:-28790 | Msa1399160:CDS |
| AATTAAGATCAGTTGCAAGC+GGG | 0.578085 | tig0022333:+27535 | None:intergenic |
| GCTCGTCAGGGCCAGGACCA+AGG | 0.581447 | tig0022333:-25449 | Msa1399160:three_prime_UTR |
| TGTCCAAGAAATACACGGAA+TGG | 0.590755 | tig0022333:-25572 | Msa1399160:CDS |
| TTATAGTTAACAATAGAAAG+AGG | 0.591156 | tig0022333:+26792 | None:intergenic |
| TCTCCATAATTGGAGGACTC+AGG | 0.594738 | tig0022333:-29704 | Msa1399160:intron |
| AGATAGGACTCAACCAAACA+AGG | 0.601132 | tig0022333:-25682 | Msa1399160:CDS |
| TGCAGGGTTCTGTAGAGGCT+AGG | 0.601922 | tig0022333:-29395 | Msa1399160:intron |
| CACCAATTGATCCAGGATGT+AGG | 0.603231 | tig0022333:+28779 | None:intergenic |
| ATAGTGCGCGGTTCATCACA+CGG | 0.603482 | tig0022333:+27369 | None:intergenic |
| ATTCTCACCACCAGAAGTGT+AGG | 0.604998 | tig0022333:+27232 | None:intergenic |
| TGAGCTGAGAGAAAAGAGGA+AGG | 0.610119 | tig0022333:+30902 | None:intergenic |
| TTCACTGTTATTTGTCATGG+GGG | 0.612659 | tig0022333:-27340 | Msa1399160:CDS |
| TTTGTGGGGAGGTTGCATGA+TGG | 0.615178 | tig0022333:-28024 | Msa1399160:intron |
| TGGGTTTCGAAGGCTCGTCA+GGG | 0.615860 | tig0022333:-25461 | Msa1399160:three_prime_UTR |
| ATTCTGAGCTGAGAGAAAAG+AGG | 0.616714 | tig0022333:+30898 | None:intergenic |
| CGTATATTGTATGCTCCTTG+AGG | 0.617384 | tig0022333:+25422 | Msa1399150:three_prime_UTR |
| CAGTAATTATGCCTCTAAAG+GGG | 0.620606 | tig0022333:-29741 | Msa1399160:CDS |
| ATAGTAATCTTGATACAGCA+TGG | 0.621568 | tig0022333:+29519 | None:intergenic |
| ACAACTAAAATAAATTCTAG+AGG | 0.625172 | tig0022333:+29566 | None:intergenic |
| GAATCAAGAGAATCTAAGGA+AGG | 0.625526 | tig0022333:+30924 | None:intergenic |
| CAGTTAACATCTCTATATGG+TGG | 0.629135 | tig0022333:-29590 | Msa1399160:CDS |
| CCATGACAAATAACAGTGAA+CGG | 0.629945 | tig0022333:+27343 | None:intergenic |
| TAACTCCCTAAACTTCCAGA+TGG | 0.632432 | tig0022333:+28423 | None:intergenic |
| GAAATTGCCTACACTTCTGG+TGG | 0.632664 | tig0022333:-27239 | Msa1399160:intron |
| AGAAGTGTAGGCAATTTCCT+CGG | 0.638387 | tig0022333:+27244 | None:intergenic |
| TGAGGAAAGACAGCGACTGG+CGG | 0.638947 | tig0022333:+27558 | None:intergenic |
| GACTTTATGCAAGATAATTG+TGG | 0.643767 | tig0022333:-27913 | Msa1399160:CDS |
| AAATTAAGATCAGTTGCAAG+CGG | 0.644079 | tig0022333:+27534 | None:intergenic |
| ACAGGTTGGAGTGGAGACCA+TGG | 0.650787 | tig0022333:-28845 | Msa1399160:intron |
| CTATAAGGGTTACTCAGCCG+AGG | 0.654656 | tig0022333:-27261 | Msa1399160:CDS |
| GTGGCAAATCCTATTGAACA+AGG | 0.668813 | tig0022333:+28065 | None:intergenic |
| TTGCAACATGTTGTCCCCAG+AGG | 0.669715 | tig0022333:-26820 | Msa1399160:CDS |
| TAGTTAACAATAGAAAGAGG+AGG | 0.671598 | tig0022333:+26795 | None:intergenic |
| TGAGATGGAAAGAAATCCTG+AGG | 0.674371 | tig0022333:-28746 | Msa1399160:intron |
| TTCATTGTCCAAGAAATACA+CGG | 0.678174 | tig0022333:-25577 | Msa1399160:CDS |
| ATTTCTTGGACAATGAACTG+AGG | 0.701305 | tig0022333:+25583 | Msa1399150:three_prime_UTR |
| AGTGAACGGTGAATAGTGCG+CGG | 0.735851 | tig0022333:+27357 | None:intergenic |
| AGAAAGAGGAGGTTCCTCTG+GGG | 0.759136 | tig0022333:+26806 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAAGACATTAAATATA+TGG | + | tig0022333:26258-26277 | None:intergenic | 10.0% |
| !! | ATTTAATGTCTTAAAATATT+AGG | - | tig0022333:26261-26280 | Msa1399160:intron | 10.0% |
| !! | AAAAAATATATGCAATAAAA+AGG | + | tig0022333:27229-27248 | None:intergenic | 10.0% |
| !!! | TATTATTTTCAAACAATTTA+AGG | - | tig0022333:27250-27269 | Msa1399160:CDS | 10.0% |
| !!! | AAAATAAGATAAAATTGTTT+TGG | - | tig0022333:30103-30122 | Msa1399160:intron | 10.0% |
| !! | ATTGTATGCATATATATAAA+AGG | + | tig0022333:25825-25844 | Msa1399150:intron | 15.0% |
| !! | ATGTACTTTAATTGAAAATT+GGG | + | tig0022333:26139-26158 | None:intergenic | 15.0% |
| !! | TATGTACTTTAATTGAAAAT+TGG | + | tig0022333:26140-26159 | None:intergenic | 15.0% |
| !! | ATTAAAGTACATATAAAACA+AGG | - | tig0022333:26147-26166 | Msa1399160:intron | 15.0% |
| !!! | TTTGTTTTCTTAAACTATTA+CGG | + | tig0022333:26497-26516 | None:intergenic | 15.0% |
| !!! | TAATAATCTTTTATATATGC+AGG | - | tig0022333:27127-27146 | Msa1399160:intron | 15.0% |
| !!! | AATAATCTTTTATATATGCA+GGG | - | tig0022333:27128-27147 | Msa1399160:intron | 15.0% |
| !!! | TAAATTTTCAATTCAAGATT+AGG | - | tig0022333:27466-27485 | Msa1399160:intron | 15.0% |
| !! | TCTTGAATATCAATTTATTA+TGG | - | tig0022333:28282-28301 | Msa1399160:intron | 15.0% |
| !!! | TTTTTTCGTATTTATCATAT+AGG | - | tig0022333:28899-28918 | Msa1399160:intron | 15.0% |
| !! | ATTATATACCATTTGAAAAA+TGG | - | tig0022333:30525-30544 | Msa1399160:intron | 15.0% |
| !! | ACTTATAACAATAAACTATT+TGG | - | tig0022333:30719-30738 | Msa1399160:intron | 15.0% |
| !! | ATTTGAATGAAAAATCCAAA+AGG | + | tig0022333:25675-25694 | Msa1399150:three_prime_UTR | 20.0% |
| !!! | AGTTTGATTTAATAATCTCA+AGG | - | tig0022333:26050-26069 | Msa1399160:CDS | 20.0% |
| !! | TGTACTTTAATTGAAAATTG+GGG | + | tig0022333:26138-26157 | None:intergenic | 20.0% |
| !! | TGAACATAAAATTCAGATTA+TGG | + | tig0022333:26345-26364 | None:intergenic | 20.0% |
| !! | TTTAAGAAAACAAAAGTGAT+TGG | - | tig0022333:26503-26522 | Msa1399160:intron | 20.0% |
| !! | TGCAATATTTAATGTTATAG+TGG | + | tig0022333:26874-26893 | None:intergenic | 20.0% |
| !! | ACAACTAAAATAAATTCTAG+AGG | + | tig0022333:26976-26995 | None:intergenic | 20.0% |
| !! | TCAAAAAATTCACAATCAAT+TGG | - | tig0022333:27199-27218 | Msa1399160:intron | 20.0% |
| !!! | TTTTGTATTGAATTGAGATA+CGG | + | tig0022333:27406-27425 | None:intergenic | 20.0% |
| !! | ATTTGAATCTAGATTCAATA+TGG | - | tig0022333:27511-27530 | Msa1399160:intron | 20.0% |
| !!! | TCTACACATGTTTTTAATTT+CGG | + | tig0022333:27986-28005 | None:intergenic | 20.0% |
| !!! | GACGTTATTTGAAATATTTA+TGG | - | tig0022333:28004-28023 | Msa1399160:intron | 20.0% |
| !! | GAGTGTAATCAAATAATTAT+AGG | + | tig0022333:28039-28058 | None:intergenic | 20.0% |
| !! | ATACATGTATGAATTTAGTA+TGG | + | tig0022333:28246-28265 | None:intergenic | 20.0% |
| !! | ACTAAATTCATACATGTATT+TGG | - | tig0022333:28247-28266 | Msa1399160:intron | 20.0% |
| !! | TTATTATGAATCATAAGACA+CGG | + | tig0022333:28324-28343 | None:intergenic | 20.0% |
| !! | AAACCAAAGAAAAAGAAAAA+AGG | + | tig0022333:28554-28573 | None:intergenic | 20.0% |
| !!! | GAATACTACTTTTTCTTTTT+AGG | - | tig0022333:29326-29345 | Msa1399160:intron | 20.0% |
| !! | CAATATGTGTTTAAATACTA+CGG | + | tig0022333:29376-29395 | None:intergenic | 20.0% |
| !! | TTATAGTTAACAATAGAAAG+AGG | + | tig0022333:29750-29769 | None:intergenic | 20.0% |
| !! | TTTCTATTGTTAACTATAAC+TGG | - | tig0022333:29751-29770 | Msa1399160:CDS | 20.0% |
| !!! | GGATAAAAGACTTATTATTT+TGG | + | tig0022333:29808-29827 | None:intergenic | 20.0% |
| !!! | GAAAAACCAAAATTTTGAAT+TGG | - | tig0022333:29886-29905 | Msa1399160:intron | 20.0% |
| !! | AATGTGTATTTCTCATATAT+TGG | + | tig0022333:30365-30384 | None:intergenic | 20.0% |
| !! | ATTTCTCTCAATCTATTAAT+TGG | - | tig0022333:30496-30515 | Msa1399160:intron | 20.0% |
| !!! | AGATTTTTCCATTTTTCAAA+TGG | + | tig0022333:30536-30555 | None:intergenic | 20.0% |
| !! | TCTGAATAACTACAAAAAAA+TGG | - | tig0022333:31005-31024 | Msa1399160:five_prime_UTR | 20.0% |
| ! | ACAGAAAATGACATAGAAAT+AGG | - | tig0022333:25484-25503 | Msa1399160:three_prime_UTR | 25.0% |
| ! | TCTTACATCACAAAAATACA+AGG | + | tig0022333:25537-25556 | Msa1399150:three_prime_UTR | 25.0% |
| ! | TTCAAAGAATAACAGAAAGA+AGG | - | tig0022333:25573-25592 | Msa1399160:CDS | 25.0% |
| ! | TCAAAGAATAACAGAAAGAA+GGG | - | tig0022333:25574-25593 | Msa1399160:CDS | 25.0% |
| !! | TGGATTTTTCATTCAAATTC+AGG | - | tig0022333:25677-25696 | Msa1399160:CDS | 25.0% |
| !! | TTTTTCATTCAAATTCAGGT+AGG | - | tig0022333:25681-25700 | Msa1399160:CDS | 25.0% |
| ! | CATATGGAATTGCAAAAAAA+GGG | + | tig0022333:25791-25810 | Msa1399150:intron | 25.0% |
| ! | ACATATGGAATTGCAAAAAA+AGG | + | tig0022333:25792-25811 | Msa1399150:intron | 25.0% |
| !! | AAAGGTTTCAGTTTTACATA+TGG | + | tig0022333:25807-25826 | Msa1399150:intron | 25.0% |
| !!! | AATAGTTATTTTACGATCGT+TGG | + | tig0022333:26090-26109 | Msa1399150:three_prime_UTR | 25.0% |
| ! | AACGATCGTAAAATAACTAT+TGG | - | tig0022333:26089-26108 | Msa1399160:CDS | 25.0% |
| !!! | TAAAACAAGGTCATTTTTGT+TGG | - | tig0022333:26160-26179 | Msa1399160:intron | 25.0% |
| ! | TTGAACAATATACAAGTGAA+AGG | - | tig0022333:26230-26249 | Msa1399160:intron | 25.0% |
| !! | AATTTTATGTTCAATGTGCA+GGG | - | tig0022333:26352-26371 | Msa1399160:intron | 25.0% |
| ! | AAAGAGAGATAAGAAGAATA+AGG | - | tig0022333:26684-26703 | Msa1399160:intron | 25.0% |
| ! | AAGATTACTATCAGAATTTG+AGG | - | tig0022333:27032-27051 | Msa1399160:intron | 25.0% |
| ! | ACTGAAATAGAGTGATTAAA+GGG | + | tig0022333:27089-27108 | None:intergenic | 25.0% |
| ! | AACTGAAATAGAGTGATTAA+AGG | + | tig0022333:27090-27109 | None:intergenic | 25.0% |
| !! | TAATCACTCTATTTCAGTTT+TGG | - | tig0022333:27091-27110 | Msa1399160:intron | 25.0% |
| ! | ATATAAGCAAGAAAAAAACC+AGG | + | tig0022333:27293-27312 | None:intergenic | 25.0% |
| ! | TATCATAGCTGTATCATTTA+TGG | - | tig0022333:27353-27372 | Msa1399160:CDS | 25.0% |
| ! | CAATTCAAGATTAGGAAAAT+AGG | - | tig0022333:27474-27493 | Msa1399160:intron | 25.0% |
| ! | TTAAGCAAAGATATCTATGA+AGG | - | tig0022333:27560-27579 | Msa1399160:CDS | 25.0% |
| ! | TATTGTAAGACTAAGATAGT+TGG | + | tig0022333:27660-27679 | None:intergenic | 25.0% |
| !!! | AATAGTATTGACAATTGAAC+AGG | - | tig0022333:27676-27695 | Msa1399160:intron | 25.0% |
| !! | CAGCAAATATGTATTGTTTT+TGG | - | tig0022333:27724-27743 | Msa1399160:intron | 25.0% |
| ! | CAACAGATATTTATACAAAC+TGG | - | tig0022333:28077-28096 | Msa1399160:intron | 25.0% |
| ! | TTAAAGAGACATAAATCTAG+AGG | + | tig0022333:28175-28194 | None:intergenic | 25.0% |
| ! | TTATGTCTCTTTAATGATCA+TGG | - | tig0022333:28181-28200 | Msa1399160:intron | 25.0% |
| !!! | CTACCTTTTTTCTTTTTCTT+TGG | - | tig0022333:28548-28567 | Msa1399160:intron | 25.0% |
| ! | TTCTGTTTATTATCCTTTAC+AGG | - | tig0022333:28933-28952 | Msa1399160:intron | 25.0% |
| ! | TTAATTAGTTCAACATGTAC+AGG | - | tig0022333:29088-29107 | Msa1399160:intron | 25.0% |
| !!! | ACTACTTTTTCTTTTTAGGT+AGG | - | tig0022333:29330-29349 | Msa1399160:intron | 25.0% |
| ! | TTCAAATTATTACACAAGCT+TGG | + | tig0022333:29829-29848 | None:intergenic | 25.0% |
| !! | CTTCTTCCAATTCAAAATTT+TGG | + | tig0022333:29895-29914 | None:intergenic | 25.0% |
| ! | ATAAGTAGTTTATCCAAACA+AGG | + | tig0022333:30014-30033 | None:intergenic | 25.0% |
| ! | CTTTCTCTATTTCATATTGA+GGG | + | tig0022333:30266-30285 | None:intergenic | 25.0% |
| ! | ACTTTCTCTATTTCATATTG+AGG | + | tig0022333:30267-30286 | None:intergenic | 25.0% |
| ! | GAATTTGAGTGAATATATGT+TGG | - | tig0022333:30294-30313 | Msa1399160:intron | 25.0% |
| ! | ATGAGAAATACACATTTACT+AGG | - | tig0022333:30369-30388 | Msa1399160:intron | 25.0% |
| !!! | TCTTTAATTTTTTCTTGAGC+AGG | - | tig0022333:30416-30435 | Msa1399160:intron | 25.0% |
| ! | CTTATCTGATAAGTACTTAT+TGG | + | tig0022333:30630-30649 | None:intergenic | 25.0% |
| ! | AAAAACTCTAGATGAGAAAA+AGG | + | tig0022333:30816-30835 | None:intergenic | 25.0% |
| !! | TGTATTTTCTTCAGATAGAT+AGG | - | tig0022333:30841-30860 | Msa1399160:intron | 25.0% |
| !! | AAACTTTTACATGGAAGAAA+AGG | - | tig0022333:30912-30931 | Msa1399160:CDS | 25.0% |
| !! | AACTTTTACATGGAAGAAAA+GGG | - | tig0022333:30913-30932 | Msa1399160:CDS | 25.0% |
| !! | TTAGTGAAACAAAATCGTTT+TGG | - | tig0022333:31034-31053 | Msa1399160:five_prime_UTR | 25.0% |
| !!! | AAAATCGTTTTGGAATACAA+AGG | - | tig0022333:31044-31063 | Msa1399160:five_prime_UTR | 25.0% |
| TACGAATAAGAGTTTCACAT+TGG | - | tig0022333:26192-26211 | Msa1399160:intron | 30.0% | |
| AATAAGAGTTTCACATTGGA+TGG | - | tig0022333:26196-26215 | Msa1399160:intron | 30.0% | |
| ! | GAATTTTATGTTCAATGTGC+AGG | - | tig0022333:26351-26370 | Msa1399160:intron | 30.0% |
| !!! | ATTTGCTTAGTCTTAGCTTT+TGG | - | tig0022333:26382-26401 | Msa1399160:intron | 30.0% |
| !!! | TTTGCTTAGTCTTAGCTTTT+GGG | - | tig0022333:26383-26402 | Msa1399160:intron | 30.0% |
| ! | TTGTGTCCATAAGAATTTTG+AGG | - | tig0022333:26641-26660 | Msa1399160:intron | 30.0% |
| ! | AAAGTGCCTCAAAATTCTTA+TGG | + | tig0022333:26650-26669 | None:intergenic | 30.0% |
| !!! | GGCATAATTACTGTTACTTT+TGG | + | tig0022333:26791-26810 | None:intergenic | 30.0% |
| AACAGTAATTATGCCTCTAA+AGG | - | tig0022333:26796-26815 | Msa1399160:CDS | 30.0% | |
| ACAGTAATTATGCCTCTAAA+GGG | - | tig0022333:26797-26816 | Msa1399160:CDS | 30.0% | |
| ATGCAGTTAACATCTCTATA+TGG | - | tig0022333:26946-26965 | Msa1399160:intron | 30.0% | |
| ATAGTAATCTTGATACAGCA+TGG | + | tig0022333:27023-27042 | None:intergenic | 30.0% | |
| GTCATACTATATATGAAACC+TGG | - | tig0022333:27272-27291 | Msa1399160:CDS | 30.0% | |
| ! | TCATATTGATGATCTACATG+TGG | - | tig0022333:27329-27348 | Msa1399160:CDS | 30.0% |
| !! | ATATTTGCTGTCTTTATCCA+TGG | + | tig0022333:27714-27733 | None:intergenic | 30.0% |
| TGCCTTAAAAATTCGAAATC+CGG | - | tig0022333:27818-27837 | Msa1399160:intron | 30.0% | |
| ! | ATCCGGATTTCGAATTTTTA+AGG | + | tig0022333:27823-27842 | None:intergenic | 30.0% |
| TAAAAATTCGAAATCCGGAT+TGG | - | tig0022333:27823-27842 | Msa1399160:intron | 30.0% | |
| ! | TTTTTCTTTGATAAGCGAGT+TGG | + | tig0022333:27910-27929 | None:intergenic | 30.0% |
| ATTTACCATCTGGAAGTTTA+GGG | - | tig0022333:28111-28130 | Msa1399160:intron | 30.0% | |
| TTGCATCTATGAATACCATA+TGG | - | tig0022333:28139-28158 | Msa1399160:intron | 30.0% | |
| TTTAGTATGGAATCGAGATA+TGG | + | tig0022333:28233-28252 | None:intergenic | 30.0% | |
| ! | TTTGATAACCATGATCTTGA+TGG | - | tig0022333:28385-28404 | Msa1399160:intron | 30.0% |
| ! | TGGAAAAACCTTCTTTTTGT+GGG | - | tig0022333:28500-28519 | Msa1399160:intron | 30.0% |
| GACTTTATGCAAGATAATTG+TGG | - | tig0022333:28626-28645 | Msa1399160:intron | 30.0% | |
| AGTACACACATATTTGATCA+CGG | + | tig0022333:28870-28889 | None:intergenic | 30.0% | |
| AAATTAAGATCAGTTGCAAG+CGG | + | tig0022333:29008-29027 | None:intergenic | 30.0% | |
| ! | CTTGCAACTGATCTTAATTT+TGG | - | tig0022333:29008-29027 | Msa1399160:intron | 30.0% |
| ! | CAACTGATCTTAATTTTGGA+AGG | - | tig0022333:29012-29031 | Msa1399160:intron | 30.0% |
| ! | GAGGAAACAAACATTTGTTT+TGG | - | tig0022333:29125-29144 | Msa1399160:intron | 30.0% |
| GTTTGTATTGCCATACATTA+TGG | - | tig0022333:29221-29240 | Msa1399160:intron | 30.0% | |
| CATAGTAGTCATTCTGTAAA+TGG | - | tig0022333:29430-29449 | Msa1399160:intron | 30.0% | |
| ! | GTATTTGCTTTCTTTTGAAC+CGG | - | tig0022333:29517-29536 | Msa1399160:CDS | 30.0% |
| ! | TATTTGCTTTCTTTTGAACC+GGG | - | tig0022333:29518-29537 | Msa1399160:CDS | 30.0% |
| TAGTTAACAATAGAAAGAGG+AGG | + | tig0022333:29747-29766 | None:intergenic | 30.0% | |
| TTTCATATTGAGGGTCTATT+TGG | + | tig0022333:30257-30276 | None:intergenic | 30.0% | |
| AGAAATACACATTTACTAGG+TGG | - | tig0022333:30372-30391 | Msa1399160:intron | 30.0% | |
| TCTCAATCTATTAATTGGTC+TGG | - | tig0022333:30501-30520 | Msa1399160:intron | 30.0% | |
| GAAAAATGGAAAAATCTGCA+AGG | - | tig0022333:30539-30558 | Msa1399160:intron | 30.0% | |
| TACAATCAAAGAGAGAATGT+AGG | - | tig0022333:30672-30691 | Msa1399160:intron | 30.0% | |
| TTCATTGTCCAAGAAATACA+CGG | - | tig0022333:30962-30981 | Msa1399160:five_prime_UTR | 30.0% | |
| TGTAGTTATTCAGATCTCTT+GGG | + | tig0022333:30999-31018 | None:intergenic | 30.0% | |
| TTGTAGTTATTCAGATCTCT+TGG | + | tig0022333:31000-31019 | None:intergenic | 30.0% | |
| GAATCAAGAGAATCTAAGGA+AGG | + | tig0022333:25618-25637 | Msa1399150:three_prime_UTR | 35.0% | |
| GAAGGAATCAAGAGAATCTA+AGG | + | tig0022333:25622-25641 | Msa1399150:three_prime_UTR | 35.0% | |
| ! | TCAGAATTCTCTTCTCCTTT+TGG | - | tig0022333:25657-25676 | Msa1399160:CDS | 35.0% |
| TTTCACATTGGATGGAAAAG+TGG | - | tig0022333:26204-26223 | Msa1399160:intron | 35.0% | |
| !! | GTTTTGAGCAACTACACAAA+TGG | + | tig0022333:26307-26326 | None:intergenic | 35.0% |
| !!! | GAGGCACTTTTTTGTCTTAT+AGG | - | tig0022333:26660-26679 | Msa1399160:intron | 35.0% |
| ! | ATAAGGAGAAGTATGCAGAA+TGG | - | tig0022333:26701-26720 | Msa1399160:intron | 35.0% |
| ! | TTTTGGCAAATTGACCTGAT+TGG | + | tig0022333:26774-26793 | None:intergenic | 35.0% |
| ! | CAGTAATTATGCCTCTAAAG+GGG | - | tig0022333:26798-26817 | Msa1399160:CDS | 35.0% |
| GTGAACACAATCTCCATAAT+TGG | - | tig0022333:26825-26844 | Msa1399160:CDS | 35.0% | |
| AACACAATCTCCATAATTGG+AGG | - | tig0022333:26828-26847 | Msa1399160:CDS | 35.0% | |
| CAGTTAACATCTCTATATGG+TGG | - | tig0022333:26949-26968 | Msa1399160:intron | 35.0% | |
| TCTAGATTCAAATCGCGAAT+CGG | + | tig0022333:27504-27523 | None:intergenic | 35.0% | |
| AGACAAAGCAATTGATCAAC+AGG | + | tig0022333:27620-27639 | None:intergenic | 35.0% | |
| ! | GTATTGACAATTGAACAGGT+TGG | - | tig0022333:27680-27699 | Msa1399160:intron | 35.0% |
| !!! | GAATTTTTAAGGCATACCTC+AGG | + | tig0022333:27812-27831 | None:intergenic | 35.0% |
| GCAATTAGATCGAAATCAGA+CGG | - | tig0022333:27883-27902 | Msa1399160:CDS | 35.0% | |
| TATCCTCTTGATTTACCATC+TGG | - | tig0022333:28101-28120 | Msa1399160:intron | 35.0% | |
| GATTTACCATCTGGAAGTTT+AGG | - | tig0022333:28110-28129 | Msa1399160:intron | 35.0% | |
| AGAGACATAAATCTAGAGGT+AGG | + | tig0022333:28171-28190 | None:intergenic | 35.0% | |
| TATGGAATCGAGATATGGAT+CGG | + | tig0022333:28228-28247 | None:intergenic | 35.0% | |
| TCATAAGACACGGTCAATAA+TGG | + | tig0022333:28314-28333 | None:intergenic | 35.0% | |
| TCGAGATTGAAATCGTGAAT+TGG | + | tig0022333:28365-28384 | None:intergenic | 35.0% | |
| TATAGTAGCCATCAAGATCA+TGG | + | tig0022333:28396-28415 | None:intergenic | 35.0% | |
| ! | GTGGAAAAACCTTCTTTTTG+TGG | - | tig0022333:28499-28518 | Msa1399160:intron | 35.0% |
| ! | GGAAAAACCTTCTTTTTGTG+GGG | - | tig0022333:28501-28520 | Msa1399160:intron | 35.0% |
| TATCAATTACTCACCAGCTA+TGG | + | tig0022333:28705-28724 | None:intergenic | 35.0% | |
| ACATATTTGATCACGGAGTT+TGG | + | tig0022333:28863-28882 | None:intergenic | 35.0% | |
| ! | CTTTTTATGAGCTCCTGTAA+AGG | + | tig0022333:28949-28968 | None:intergenic | 35.0% |
| AATTAAGATCAGTTGCAAGC+GGG | + | tig0022333:29007-29026 | None:intergenic | 35.0% | |
| !! | ACAGGTACTGGAATTATTTG+AGG | - | tig0022333:29106-29125 | Msa1399160:intron | 35.0% |
| CCATGACAAATAACAGTGAA+CGG | + | tig0022333:29199-29218 | None:intergenic | 35.0% | |
| ! | CGTTCACTGTTATTTGTCAT+GGG | - | tig0022333:29197-29216 | Msa1399160:intron | 35.0% |
| ! | GTTCACTGTTATTTGTCATG+GGG | - | tig0022333:29198-29217 | Msa1399160:intron | 35.0% |
| ! | TTCACTGTTATTTGTCATGG+GGG | - | tig0022333:29199-29218 | Msa1399160:intron | 35.0% |
| ATTGCCATACATTATGGCAA+TGG | - | tig0022333:29227-29246 | Msa1399160:intron | 35.0% | |
| TGAACCATTGCCATAATGTA+TGG | + | tig0022333:29234-29253 | None:intergenic | 35.0% | |
| AGCACTACAGTTTCACTATA+AGG | - | tig0022333:29263-29282 | Msa1399160:intron | 35.0% | |
| GCACTACAGTTTCACTATAA+GGG | - | tig0022333:29264-29283 | Msa1399160:intron | 35.0% | |
| !! | CAAGTTTTGATCACTGAGTT+CGG | + | tig0022333:29474-29493 | None:intergenic | 35.0% |
| CTATCAGATACCTATGATTC+AGG | - | tig0022333:29549-29568 | Msa1399160:CDS | 35.0% | |
| GCATGTTATTCCTGAATCAT+AGG | + | tig0022333:29562-29581 | None:intergenic | 35.0% | |
| TGTAAAACCTAGGATAGAGT+AGG | + | tig0022333:29598-29617 | None:intergenic | 35.0% | |
| GAAGGAAAACTGTAAAACCT+AGG | + | tig0022333:29608-29627 | None:intergenic | 35.0% | |
| ! | TTTACAGTTTTCCTTCTCTC+AGG | - | tig0022333:29612-29631 | Msa1399160:intron | 35.0% |
| ! | TTACAGTTTTCCTTCTCTCA+GGG | - | tig0022333:29613-29632 | Msa1399160:intron | 35.0% |
| TTCTTGAGCTTCTTTCAATG+TGG | - | tig0022333:29670-29689 | Msa1399160:intron | 35.0% | |
| TTTCAATGTGGAACTTGACA+AGG | - | tig0022333:29682-29701 | Msa1399160:intron | 35.0% | |
| AGAAACTGAAGCATGATACA+TGG | - | tig0022333:29936-29955 | Msa1399160:intron | 35.0% | |
| AACAAGGATTGACATCAACA+TGG | - | tig0022333:29963-29982 | Msa1399160:intron | 35.0% | |
| TAGTTTATCCAAACAAGGCA+TGG | + | tig0022333:30009-30028 | None:intergenic | 35.0% | |
| TTTGCAGCTTATAGCATAAG+CGG | - | tig0022333:30033-30052 | Msa1399160:intron | 35.0% | |
| GAGAACGAATTGCAGATATA+GGG | + | tig0022333:30476-30495 | None:intergenic | 35.0% | |
| TGAGAACGAATTGCAGATAT+AGG | + | tig0022333:30477-30496 | None:intergenic | 35.0% | |
| GAAAAATCTGCAAGGTAAGT+TGG | - | tig0022333:30547-30566 | Msa1399160:intron | 35.0% | |
| ! | TTGGCTGGAAAACTTTTACA+TGG | - | tig0022333:30903-30922 | Msa1399160:CDS | 35.0% |
| AGAAAAGGGTTTCCTTCAAA+AGG | - | tig0022333:30927-30946 | Msa1399160:CDS | 35.0% | |
| ATTTCTTGGACAATGAACTG+AGG | + | tig0022333:30959-30978 | None:intergenic | 35.0% | |
| ATACAAAGGCTTAAGTGAGT+TGG | - | tig0022333:31058-31077 | Msa1399160:five_prime_UTR | 35.0% | |
| TACAAAGGCTTAAGTGAGTT+GGG | - | tig0022333:31059-31078 | Msa1399160:five_prime_UTR | 35.0% | |
| ATTCTGAGCTGAGAGAAAAG+AGG | + | tig0022333:25644-25663 | Msa1399150:three_prime_UTR | 40.0% | |
| GAGAGAGAGTAATGCAGAAA+TGG | + | tig0022333:25711-25730 | Msa1399150:intron | 40.0% | |
| TAAACCTAGACGCGTTTCAA+TGG | - | tig0022333:26023-26042 | Msa1399160:CDS | 40.0% | |
| !!! | CTTAGTCTTAGCTTTTGGGT+GGG | - | tig0022333:26387-26406 | Msa1399160:intron | 40.0% |
| CGTTAAACACCAACACATGT+CGG | - | tig0022333:26545-26564 | Msa1399160:intron | 40.0% | |
| ACTATTTAGCACCAACACCT+CGG | + | tig0022333:26584-26603 | None:intergenic | 40.0% | |
| TGAACTTGAGCATTCCAATC+AGG | - | tig0022333:26757-26776 | Msa1399160:intron | 40.0% | |
| ! | ATTATGCCTCTAAAGGGGTT+TGG | - | tig0022333:26803-26822 | Msa1399160:CDS | 40.0% |
| ATACCTGAGTCCTCCAATTA+TGG | + | tig0022333:26841-26860 | None:intergenic | 40.0% | |
| ATATATGCAGGGTTCTGTAG+AGG | - | tig0022333:27139-27158 | Msa1399160:intron | 40.0% | |
| TGAGATGGAAAGAAATCCTG+AGG | - | tig0022333:27793-27812 | Msa1399160:intron | 40.0% | |
| ! | CTGTGTGGAATTATTGACTG+CGG | + | tig0022333:27849-27868 | None:intergenic | 40.0% |
| CTTCCAGATGGTAAATCAAG+AGG | + | tig0022333:28107-28126 | None:intergenic | 40.0% | |
| TAACTCCCTAAACTTCCAGA+TGG | + | tig0022333:28119-28138 | None:intergenic | 40.0% | |
| AATCCTATTGAACAAGGCTG+TGG | + | tig0022333:28471-28490 | None:intergenic | 40.0% | |
| GTGGCAAATCCTATTGAACA+AGG | + | tig0022333:28477-28496 | None:intergenic | 40.0% | |
| TGTTCAATAGGATTTGCCAC+TGG | - | tig0022333:28477-28496 | Msa1399160:intron | 40.0% | |
| ! | AAAGAAGGTTTTTCCACCAG+TGG | + | tig0022333:28496-28515 | None:intergenic | 40.0% |
| ! | AAAACCTTCTTTTTGTGGGG+AGG | - | tig0022333:28504-28523 | Msa1399160:intron | 40.0% |
| GTAGTCTCAGAACTTCGAAA+TGG | - | tig0022333:28650-28669 | Msa1399160:intron | 40.0% | |
| AGTTCAACATGTACAGGTAC+TGG | - | tig0022333:29094-29113 | Msa1399160:intron | 40.0% | |
| ! | CCGTTCACTGTTATTTGTCA+TGG | - | tig0022333:29196-29215 | Msa1399160:intron | 40.0% |
| ! | AGAAGTGTAGGCAATTTCCT+CGG | + | tig0022333:29298-29317 | None:intergenic | 40.0% |
| AATGGAGACGTAGACACAAT+TGG | - | tig0022333:29448-29467 | Msa1399160:intron | 40.0% | |
| TATCTGATAGCACAACATCC+CGG | + | tig0022333:29539-29558 | None:intergenic | 40.0% | |
| CTTGTTACCTACTCTATCCT+AGG | - | tig0022333:29588-29607 | Msa1399160:CDS | 40.0% | |
| ! | AAGCTCAAGAAGAGTGCATA+TGG | + | tig0022333:29661-29680 | None:intergenic | 40.0% |
| CATGATACATGGACACAACA+AGG | - | tig0022333:29947-29966 | Msa1399160:intron | 40.0% | |
| GCAGGTATTCATTGCTATGT+TGG | - | tig0022333:30434-30453 | Msa1399160:intron | 40.0% | |
| GGTATTCATTGCTATGTTGG+TGG | - | tig0022333:30437-30456 | Msa1399160:intron | 40.0% | |
| AGATAGGACTCAACCAAACA+AGG | - | tig0022333:30857-30876 | Msa1399160:intron | 40.0% | |
| GACTCAACCAAACAAGGATA+TGG | - | tig0022333:30863-30882 | Msa1399160:CDS | 40.0% | |
| ! | CTGAGGATTGATCCTTTTGA+AGG | + | tig0022333:30942-30961 | None:intergenic | 40.0% |
| TGTCCAAGAAATACACGGAA+TGG | - | tig0022333:30967-30986 | Msa1399160:five_prime_UTR | 40.0% | |
| ! | TTAAGTGAGTTGGGTTTCGA+AGG | - | tig0022333:31068-31087 | Msa1399160:five_prime_UTR | 40.0% |
| CGTATATTGTATGCTCCTTG+AGG | + | tig0022333:31120-31139 | None:intergenic | 40.0% | |
| TGAGCTGAGAGAAAAGAGGA+AGG | + | tig0022333:25640-25659 | Msa1399150:three_prime_UTR | 45.0% | |
| CTTACCATTGAAACGCGTCT+AGG | + | tig0022333:26030-26049 | Msa1399150:three_prime_UTR | 45.0% | |
| !!! | GCTTAGTCTTAGCTTTTGGG+TGG | - | tig0022333:26386-26405 | Msa1399160:intron | 45.0% |
| GTGTTTAACGTCGAGACATG+TGG | + | tig0022333:26535-26554 | None:intergenic | 45.0% | |
| TGTTCACCAAACCCCTTTAG+AGG | + | tig0022333:26812-26831 | None:intergenic | 45.0% | |
| TCTCCATAATTGGAGGACTC+AGG | - | tig0022333:26835-26854 | Msa1399160:CDS | 45.0% | |
| CTTGATACAGCATGGTAAGC+AGG | + | tig0022333:27015-27034 | None:intergenic | 45.0% | |
| GAGGCTAGGATAATTGTAGC+TGG | - | tig0022333:27158-27177 | Msa1399160:intron | 45.0% | |
| CTTGCGCATCAAGTAACAGT+AGG | + | tig0022333:27587-27606 | None:intergenic | 45.0% | |
| ! | GACAATTGAACAGGTTGGAG+TGG | - | tig0022333:27685-27704 | Msa1399160:intron | 45.0% |
| AGCCTACATCCTGGATCAAT+TGG | - | tig0022333:27758-27777 | Msa1399160:intron | 45.0% | |
| CACCAATTGATCCAGGATGT+AGG | + | tig0022333:27763-27782 | None:intergenic | 45.0% | |
| ! | ATTATTGACTGCGGCCAATC+CGG | + | tig0022333:27840-27859 | None:intergenic | 45.0% |
| TGCATTCACGCATTCAGAGT+TGG | + | tig0022333:27940-27959 | None:intergenic | 45.0% | |
| AGAGGTAGGTGTGTACCATA+TGG | + | tig0022333:28157-28176 | None:intergenic | 45.0% | |
| !! | GTTCCACAGCCTTGTTCAAT+AGG | - | tig0022333:28465-28484 | Msa1399160:intron | 45.0% |
| TCAATAGGATTTGCCACTGG+TGG | - | tig0022333:28480-28499 | Msa1399160:intron | 45.0% | |
| GTCTCAGAACTTCGAAATGG+TGG | - | tig0022333:28653-28672 | Msa1399160:intron | 45.0% | |
| TACCGCGATCACTTTACAGT+CGG | - | tig0022333:28819-28838 | Msa1399160:CDS | 45.0% | |
| CACTTTACAGTCGGAGACTT+TGG | - | tig0022333:28828-28847 | Msa1399160:CDS | 45.0% | |
| GTCGGAGACTTTGGCAAAAT+TGG | - | tig0022333:28837-28856 | Msa1399160:CDS | 45.0% | |
| GAGGAAATTGCCTACACTTC+TGG | - | tig0022333:29297-29316 | Msa1399160:intron | 45.0% | |
| GAAATTGCCTACACTTCTGG+TGG | - | tig0022333:29300-29319 | Msa1399160:intron | 45.0% | |
| ! | ATTCTCACCACCAGAAGTGT+AGG | + | tig0022333:29310-29329 | None:intergenic | 45.0% |
| TAGAAAGAGGAGGTTCCTCT+GGG | + | tig0022333:29737-29756 | None:intergenic | 45.0% | |
| ATAGAAAGAGGAGGTTCCTC+TGG | + | tig0022333:29738-29757 | None:intergenic | 45.0% | |
| !! | TCTGCAAGGTAAGTTGGTCA+AGG | - | tig0022333:30553-30572 | Msa1399160:intron | 45.0% |
| ACTGGAGCCATATCCTTGTT+TGG | + | tig0022333:30873-30892 | None:intergenic | 45.0% | |
| ACGCCATTCCGTGTATTTCT+TGG | + | tig0022333:30973-30992 | None:intergenic | 45.0% | |
| ATGCCCTAAATCCGAGGTGT+TGG | - | tig0022333:26570-26589 | Msa1399160:intron | 50.0% | |
| GCACCAACACCTCGGATTTA+GGG | + | tig0022333:26576-26595 | None:intergenic | 50.0% | |
| AGCACCAACACCTCGGATTT+AGG | + | tig0022333:26577-26596 | None:intergenic | 50.0% | |
| GATGATGTGAGCCTACATCC+TGG | - | tig0022333:27749-27768 | Msa1399160:intron | 50.0% | |
| GCAACCTCCCCACAAAAAGA+AGG | + | tig0022333:28511-28530 | None:intergenic | 50.0% | |
| TTTGTGGGGAGGTTGCATGA+TGG | - | tig0022333:28515-28534 | Msa1399160:intron | 50.0% | |
| ATGACTCTTGCAGCCATAGC+TGG | - | tig0022333:28689-28708 | Msa1399160:intron | 50.0% | |
| CTCCGACTGTAAAGTGATCG+CGG | + | tig0022333:28824-28843 | None:intergenic | 50.0% | |
| ATAGTGCGCGGTTCATCACA+CGG | + | tig0022333:29173-29192 | None:intergenic | 50.0% | |
| AGTGAACGGTGAATAGTGCG+CGG | + | tig0022333:29185-29204 | None:intergenic | 50.0% | |
| CTATAAGGGTTACTCAGCCG+AGG | - | tig0022333:29278-29297 | Msa1399160:intron | 50.0% | |
| CCAGTGATAACCCTGAGAGA+AGG | + | tig0022333:29626-29645 | None:intergenic | 50.0% | |
| CCTTCTCTCAGGGTTATCAC+TGG | - | tig0022333:29623-29642 | Msa1399160:intron | 50.0% | |
| TTGCAACATGTTGTCCCCAG+AGG | - | tig0022333:29719-29738 | Msa1399160:CDS | 50.0% | |
| AGAAAGAGGAGGTTCCTCTG+GGG | + | tig0022333:29736-29755 | None:intergenic | 50.0% | |
| ! | TCAAGCTGCCATGCCTTGTT+TGG | - | tig0022333:29998-30017 | Msa1399160:intron | 50.0% |
| ! | GGCTCCAGTTTTCACAGACT+TGG | - | tig0022333:30884-30903 | Msa1399160:CDS | 50.0% |
| CCAGCCAAGTCTGTGAAAAC+TGG | + | tig0022333:30891-30910 | None:intergenic | 50.0% | |
| ! | CCAGTTTTCACAGACTTGGC+TGG | - | tig0022333:30888-30907 | Msa1399160:CDS | 50.0% |
| AGGGCATGTCCGACATGTGT+TGG | + | tig0022333:26557-26576 | None:intergenic | 55.0% | |
| TCGGACATGCCCTAAATCCG+AGG | - | tig0022333:26564-26583 | Msa1399160:intron | 55.0% | |
| TGCAGGGTTCTGTAGAGGCT+AGG | - | tig0022333:27144-27163 | Msa1399160:intron | 55.0% | |
| ! | ACAGGTTGGAGTGGAGACCA+TGG | - | tig0022333:27694-27713 | Msa1399160:intron | 55.0% |
| GCGAGTGCACCAATTGATCC+AGG | + | tig0022333:27770-27789 | None:intergenic | 55.0% | |
| !! | CCATCGATGTGCTGACTGTG+TGG | + | tig0022333:27864-27883 | None:intergenic | 55.0% |
| CCACACAGTCAGCACATCGA+TGG | - | tig0022333:27861-27880 | Msa1399160:CDS | 55.0% | |
| TGAGGAAAGACAGCGACTGG+CGG | + | tig0022333:28984-29003 | None:intergenic | 55.0% | |
| AGATCAGTTGCAAGCGGGTG+AGG | + | tig0022333:29002-29021 | None:intergenic | 55.0% | |
| TTGGGTTTCGAAGGCTCGTC+AGG | - | tig0022333:31077-31096 | Msa1399160:five_prime_UTR | 55.0% | |
| TGGGTTTCGAAGGCTCGTCA+GGG | - | tig0022333:31078-31097 | Msa1399160:five_prime_UTR | 55.0% | |
| ATGCTCCTTGAGGTCTGCCT+TGG | + | tig0022333:31110-31129 | None:intergenic | 55.0% | |
| GGGCTTCAGCTGCTTGTGTC+AGG | - | tig0022333:26407-26426 | Msa1399160:intron | 60.0% | |
| TGGTGCACTCGCTCGTGAGA+TGG | - | tig0022333:27778-27797 | Msa1399160:intron | 60.0% | |
| GGGTGAGGAAAGACAGCGAC+TGG | + | tig0022333:28987-29006 | None:intergenic | 60.0% | |
| CTTGAGGTCTGCCTTGGTCC+TGG | + | tig0022333:31104-31123 | None:intergenic | 60.0% | |
| CAGGACCAAGGCAGACCTCA+AGG | - | tig0022333:31102-31121 | Msa1399160:five_prime_UTR | 60.0% | |
| TTCGAAGGCTCGTCAGGGCC+AGG | - | tig0022333:31083-31102 | Msa1399160:five_prime_UTR | 65.0% | |
| GCTCGTCAGGGCCAGGACCA+AGG | - | tig0022333:31090-31109 | Msa1399160:five_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022333 | gene | 25401 | 31160 | 25401 | ID=Msa1399160;Name=Msa1399160 |
| tig0022333 | mRNA | 25401 | 31160 | 25401 | ID=Msa1399160-mRNA-1;Parent=Msa1399160;Name=Msa1399160-mRNA-1;_AED=0.14;_eAED=0.14;_QI=211|1|1|1|1|1|14|147|521 |
| tig0022333 | exon | 25401 | 25706 | 25401 | ID=Msa1399160-mRNA-1:exon:17055;Parent=Msa1399160-mRNA-1 |
| tig0022333 | exon | 26001 | 26123 | 26001 | ID=Msa1399160-mRNA-1:exon:17054;Parent=Msa1399160-mRNA-1 |
| tig0022333 | exon | 26782 | 26927 | 26782 | ID=Msa1399160-mRNA-1:exon:17053;Parent=Msa1399160-mRNA-1 |
| tig0022333 | exon | 27240 | 27451 | 27240 | ID=Msa1399160-mRNA-1:exon:17052;Parent=Msa1399160-mRNA-1 |
| tig0022333 | exon | 27528 | 27606 | 27528 | ID=Msa1399160-mRNA-1:exon:17051;Parent=Msa1399160-mRNA-1 |
| tig0022333 | exon | 27851 | 27947 | 27851 | ID=Msa1399160-mRNA-1:exon:17050;Parent=Msa1399160-mRNA-1 |
| tig0022333 | exon | 28025 | 28087 | 28025 | ID=Msa1399160-mRNA-1:exon:17049;Parent=Msa1399160-mRNA-1 |
| tig0022333 | exon | 28401 | 28478 | 28401 | ID=Msa1399160-mRNA-1:exon:17048;Parent=Msa1399160-mRNA-1 |
| tig0022333 | exon | 28747 | 28863 | 28747 | ID=Msa1399160-mRNA-1:exon:17047;Parent=Msa1399160-mRNA-1 |
| tig0022333 | exon | 29341 | 29412 | 29341 | ID=Msa1399160-mRNA-1:exon:17046;Parent=Msa1399160-mRNA-1 |
| tig0022333 | exon | 29508 | 29609 | 29508 | ID=Msa1399160-mRNA-1:exon:17045;Parent=Msa1399160-mRNA-1 |
| tig0022333 | exon | 29705 | 29879 | 29705 | ID=Msa1399160-mRNA-1:exon:17044;Parent=Msa1399160-mRNA-1 |
| tig0022333 | exon | 30133 | 30188 | 30133 | ID=Msa1399160-mRNA-1:exon:17043;Parent=Msa1399160-mRNA-1 |
| tig0022333 | exon | 30863 | 31160 | 30863 | ID=Msa1399160-mRNA-1:exon:17042;Parent=Msa1399160-mRNA-1 |
| tig0022333 | five_prime_UTR | 30950 | 31160 | 30950 | ID=Msa1399160-mRNA-1:five_prime_utr;Parent=Msa1399160-mRNA-1 |
| tig0022333 | CDS | 30863 | 30949 | 30863 | ID=Msa1399160-mRNA-1:cds;Parent=Msa1399160-mRNA-1 |
| tig0022333 | CDS | 30133 | 30188 | 30133 | ID=Msa1399160-mRNA-1:cds;Parent=Msa1399160-mRNA-1 |
| tig0022333 | CDS | 29705 | 29879 | 29705 | ID=Msa1399160-mRNA-1:cds;Parent=Msa1399160-mRNA-1 |
| tig0022333 | CDS | 29508 | 29609 | 29508 | ID=Msa1399160-mRNA-1:cds;Parent=Msa1399160-mRNA-1 |
| tig0022333 | CDS | 29341 | 29412 | 29341 | ID=Msa1399160-mRNA-1:cds;Parent=Msa1399160-mRNA-1 |
| tig0022333 | CDS | 28747 | 28863 | 28747 | ID=Msa1399160-mRNA-1:cds;Parent=Msa1399160-mRNA-1 |
| tig0022333 | CDS | 28401 | 28478 | 28401 | ID=Msa1399160-mRNA-1:cds;Parent=Msa1399160-mRNA-1 |
| tig0022333 | CDS | 28025 | 28087 | 28025 | ID=Msa1399160-mRNA-1:cds;Parent=Msa1399160-mRNA-1 |
| tig0022333 | CDS | 27851 | 27947 | 27851 | ID=Msa1399160-mRNA-1:cds;Parent=Msa1399160-mRNA-1 |
| tig0022333 | CDS | 27528 | 27606 | 27528 | ID=Msa1399160-mRNA-1:cds;Parent=Msa1399160-mRNA-1 |
| tig0022333 | CDS | 27240 | 27451 | 27240 | ID=Msa1399160-mRNA-1:cds;Parent=Msa1399160-mRNA-1 |
| tig0022333 | CDS | 26782 | 26927 | 26782 | ID=Msa1399160-mRNA-1:cds;Parent=Msa1399160-mRNA-1 |
| tig0022333 | CDS | 26001 | 26123 | 26001 | ID=Msa1399160-mRNA-1:cds;Parent=Msa1399160-mRNA-1 |
| tig0022333 | CDS | 25548 | 25706 | 25548 | ID=Msa1399160-mRNA-1:cds;Parent=Msa1399160-mRNA-1 |
| tig0022333 | three_prime_UTR | 25401 | 25547 | 25401 | ID=Msa1399160-mRNA-1:three_prime_utr;Parent=Msa1399160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
