AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0548620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548620 MtrunA17_Chr4g0032401 96.418 335 7 3 1 333 1 332 0.0 658
Msa0548620 MtrunA17_Chr2g0328771 58.286 350 92 13 1 328 1 318 2.27e-112 329
Msa0548620 MtrunA17_Chr3g0088461 84.000 125 15 1 1 120 3 127 1.65e-72 228
Msa0548620 MtrunA17_Chr1g0193371 80.374 107 21 0 14 120 11 117 4.26e-59 194
Msa0548620 MtrunA17_Chr2g0330041 75.229 109 27 0 11 119 8 116 9.97e-58 191
Msa0548620 MtrunA17_Chr7g0270891 77.570 107 24 0 14 120 11 117 6.19e-57 188
Msa0548620 MtrunA17_Chr3g0117091 79.245 106 22 0 14 119 11 116 7.78e-57 187
Msa0548620 MtrunA17_Chr4g0058631 78.302 106 23 0 14 119 11 116 9.14e-57 188
Msa0548620 MtrunA17_Chr1g0211161 77.358 106 24 0 14 119 12 117 2.67e-56 182
Msa0548620 MtrunA17_Chr1g0193801 75.701 107 26 0 14 120 11 117 7.51e-56 186
Msa0548620 MtrunA17_Chr7g0271241 82.828 99 17 0 14 112 11 109 3.43e-55 184
Msa0548620 MtrunA17_Chr8g0342521 62.774 137 44 2 11 147 8 137 6.10e-55 182
Msa0548620 MtrunA17_Chr8g0342541 71.560 109 31 0 11 119 8 116 1.30e-54 182
Msa0548620 MtrunA17_Chr8g0387421 68.182 110 35 0 11 120 8 117 2.77e-53 177
Msa0548620 MtrunA17_Chr5g0397231 56.579 152 58 3 11 162 8 151 4.59e-52 175
Msa0548620 MtrunA17_Chr1g0203441 71.818 110 31 0 10 119 8 117 4.62e-52 173
Msa0548620 MtrunA17_Chr2g0309911 50.000 182 80 5 14 188 10 187 8.14e-51 171
Msa0548620 MtrunA17_Chr8g0342481 69.027 113 34 1 8 119 5 117 1.32e-50 173
Msa0548620 MtrunA17_Chr6g0470971 58.955 134 52 1 5 135 4 137 9.87e-50 167
Msa0548620 MtrunA17_Chr4g0042671 54.861 144 58 1 15 158 12 148 1.20e-49 170
Msa0548620 MtrunA17_Chr2g0281071 66.667 111 37 0 12 122 10 120 3.04e-49 168
Msa0548620 MtrunA17_Chr3g0131121 69.903 103 31 0 17 119 14 116 9.70e-49 165
Msa0548620 MtrunA17_Chr5g0435101 52.632 152 56 3 1 152 1 136 1.29e-48 162
Msa0548620 MtrunA17_Chr4g0048511 64.602 113 40 0 10 122 8 120 1.62e-48 166
Msa0548620 MtrunA17_Chr4g0037141 48.824 170 73 3 17 184 14 171 1.82e-48 164
Msa0548620 MtrunA17_Chr2g0323411 60.000 130 45 1 13 142 10 132 4.74e-48 164
Msa0548620 MtrunA17_Chr8g0385321 66.990 103 34 0 17 119 14 116 8.68e-48 163
Msa0548620 MtrunA17_Chr3g0115821 62.500 112 42 0 11 122 8 119 1.32e-47 163
Msa0548620 MtrunA17_Chr7g0228891 58.140 129 51 1 15 140 12 140 4.81e-47 160
Msa0548620 MtrunA17_Chr2g0323351 64.286 112 40 0 15 126 12 123 5.85e-47 159
Msa0548620 MtrunA17_Chr7g0217741 64.815 108 38 0 15 122 12 119 6.37e-47 160
Msa0548620 MtrunA17_Chr5g0434571 57.895 133 49 1 15 140 48 180 6.39e-47 162
Msa0548620 MtrunA17_Chr3g0110351 66.667 108 36 0 15 122 12 119 7.94e-47 160
Msa0548620 MtrunA17_Chr7g0274581 42.857 203 95 5 15 217 12 193 1.91e-46 156
Msa0548620 MtrunA17_Chr1g0203411 57.895 114 48 0 15 128 12 125 2.33e-46 159
Msa0548620 MtrunA17_Chr5g0410961 55.814 129 50 1 15 143 12 133 4.45e-46 159
Msa0548620 MtrunA17_Chr4g0057031 63.889 108 39 0 15 122 12 119 9.92e-46 156
Msa0548620 MtrunA17_Chr4g0044421 48.538 171 73 4 1 161 1 166 1.22e-45 154
Msa0548620 MtrunA17_Chr4g0070611 45.732 164 89 0 15 178 12 175 1.63e-45 157
Msa0548620 MtrunA17_Chr4g0039971 55.385 130 51 1 13 142 11 133 2.91e-45 157
Msa0548620 MtrunA17_Chr7g0228231 44.776 201 95 5 1 193 1 193 4.87e-45 152
Msa0548620 MtrunA17_Chr5g0395281 52.817 142 56 2 1 142 2 132 5.37e-45 155
Msa0548620 MtrunA17_Chr8g0349261 61.062 113 43 1 11 122 9 121 7.43e-45 155
Msa0548620 MtrunA17_Chr1g0187761 60.345 116 46 0 15 130 12 127 7.87e-45 154
Msa0548620 MtrunA17_Chr6g0452271 57.143 112 48 0 11 122 8 119 3.17e-44 154
Msa0548620 MtrunA17_Chr6g0453471 41.827 208 96 3 15 197 12 219 7.05e-44 154
Msa0548620 MtrunA17_Chr4g0070641 49.635 137 69 0 15 151 12 148 9.38e-44 148
Msa0548620 MtrunA17_Chr4g0068061 57.627 118 46 1 15 128 12 129 2.11e-43 152
Msa0548620 MtrunA17_Chr1g0167661 62.162 111 42 0 15 125 12 122 2.66e-43 149
Msa0548620 MtrunA17_Chr3g0103281 61.111 108 42 0 15 122 12 119 3.05e-43 151
Msa0548620 MtrunA17_Chr7g0275911 59.813 107 43 0 15 121 12 118 6.51e-43 149
Msa0548620 MtrunA17_Chr4g0022931 57.018 114 49 0 8 121 6 119 1.13e-42 149
Msa0548620 MtrunA17_Chr8g0343831 61.111 108 42 0 17 124 10 117 1.43e-42 147
Msa0548620 MtrunA17_Chr1g0167691 62.857 105 39 0 15 119 12 116 2.08e-42 147
Msa0548620 MtrunA17_Chr3g0121241 59.813 107 43 0 15 121 42 148 2.09e-42 149
Msa0548620 MtrunA17_Chr1g0209661 52.500 120 57 0 3 122 15 134 2.88e-42 149
Msa0548620 MtrunA17_Chr6g0450101 56.757 111 48 0 12 122 11 121 3.07e-42 145
Msa0548620 MtrunA17_Chr7g0261281 61.905 105 40 0 15 119 12 116 5.93e-42 147
Msa0548620 MtrunA17_Chr4g0022901 57.895 114 47 1 13 125 11 124 9.50e-42 146
Msa0548620 MtrunA17_Chr1g0168661 62.264 106 40 0 16 121 22 127 2.65e-41 144
Msa0548620 MtrunA17_Chr4g0055981 52.381 126 60 0 9 134 49 174 2.86e-41 144
Msa0548620 MtrunA17_Chr5g0417821 61.111 108 42 0 15 122 7 114 4.72e-41 145
Msa0548620 MtrunA17_Chr8g0346561 59.434 106 43 0 15 120 12 117 6.05e-41 145
Msa0548620 MtrunA17_Chr1g0194951 59.633 109 44 0 15 123 12 120 1.42e-40 145
Msa0548620 MtrunA17_Chr4g0022911 56.140 114 49 1 13 125 11 124 1.73e-40 143
Msa0548620 MtrunA17_Chr2g0311221 61.165 103 40 0 11 113 10 112 2.60e-40 144
Msa0548620 MtrunA17_Chr7g0254411 54.701 117 53 0 15 131 12 128 3.45e-40 144
Msa0548620 MtrunA17_Chr4g0060721 52.756 127 59 1 15 140 13 139 3.86e-40 144
Msa0548620 MtrunA17_Chr3g0092401 52.893 121 57 0 15 135 13 133 5.64e-40 142
Msa0548620 MtrunA17_Chr7g0217221 59.434 106 43 0 15 120 12 117 7.33e-40 141
Msa0548620 MtrunA17_Chr1g0152011 41.618 173 90 3 15 176 12 184 3.16e-39 141
Msa0548620 MtrunA17_Chr3g0099131 57.547 106 45 0 15 120 41 146 3.18e-39 145
Msa0548620 MtrunA17_Chr1g0151941 53.271 107 49 1 14 119 11 117 3.85e-39 139
Msa0548620 MtrunA17_Chr1g0186061 59.259 108 44 0 14 121 19 126 4.07e-39 139
Msa0548620 MtrunA17_Chr5g0400821 40.541 185 100 3 11 185 8 192 6.11e-39 140
Msa0548620 MtrunA17_Chr1g0154031 58.654 104 43 0 15 118 76 179 1.22e-38 141
Msa0548620 MtrunA17_Chr8g0354661 57.692 104 44 0 15 118 37 140 1.36e-38 144
Msa0548620 MtrunA17_Chr1g0194301 50.833 120 59 0 7 126 25 144 1.51e-38 138
Msa0548620 MtrunA17_Chr6g0453211 61.616 99 38 0 15 113 12 110 1.51e-38 139
Msa0548620 MtrunA17_Chr1g0194291 51.667 120 58 0 7 126 13 132 1.61e-38 137
Msa0548620 MtrunA17_Chr1g0180391 50.847 118 58 0 3 120 7 124 3.51e-38 135
Msa0548620 MtrunA17_Chr3g0080861 55.660 106 47 0 15 120 37 142 5.90e-38 141
Msa0548620 MtrunA17_Chr4g0028311 52.991 117 54 1 11 126 8 124 1.26e-37 137
Msa0548620 MtrunA17_Chr7g0247131 60.204 98 37 1 47 142 10 107 5.14e-37 134
Msa0548620 MtrunA17_Chr4g0022881 56.863 102 44 0 16 117 13 114 1.06e-36 132
Msa0548620 MtrunA17_Chr4g0022891 55.882 102 45 0 15 116 12 113 1.23e-36 132
Msa0548620 MtrunA17_Chr8g0342531 67.073 82 27 0 11 92 8 89 1.38e-36 129
Msa0548620 MtrunA17_Chr8g0342511 70.000 80 24 0 11 90 8 87 1.63e-36 127
Msa0548620 MtrunA17_Chr2g0327821 45.985 137 61 1 14 137 5 141 2.25e-36 131
Msa0548620 MtrunA17_Chr3g0135311 52.727 110 51 1 11 119 8 117 2.61e-36 134
Msa0548620 MtrunA17_Chr2g0322521 57.547 106 45 0 15 120 29 134 2.89e-36 135
Msa0548620 MtrunA17_Chr2g0293911 56.481 108 47 0 15 122 24 131 3.33e-36 133
Msa0548620 MtrunA17_Chr1g0192411 51.754 114 55 0 7 120 4 117 4.75e-36 134
Msa0548620 MtrunA17_Chr7g0269831 56.522 115 50 0 15 129 12 126 8.99e-36 132
Msa0548620 MtrunA17_Chr7g0264641 52.294 109 51 1 15 122 12 120 9.94e-36 130
Msa0548620 MtrunA17_Chr4g0068921 51.282 117 57 0 6 122 15 131 1.53e-35 127
Msa0548620 MtrunA17_Chr2g0327351 58.000 100 41 1 15 113 12 111 2.96e-35 130
Msa0548620 MtrunA17_Chr7g0240821 51.786 112 54 0 20 131 6 117 3.20e-35 128
Msa0548620 MtrunA17_Chr4g0030881 49.167 120 54 1 16 128 8 127 7.81e-35 127
Msa0548620 MtrunA17_Chr5g0434831 54.286 105 48 0 15 119 7 111 1.41e-34 125
Msa0548620 MtrunA17_Chr5g0434911 54.286 105 48 0 15 119 21 125 1.47e-34 127
Msa0548620 MtrunA17_Chr5g0434931 52.381 105 50 0 15 119 35 139 2.06e-34 127
Msa0548620 MtrunA17_Chr8g0342461 66.279 86 28 1 8 92 5 90 2.50e-34 122
Msa0548620 MtrunA17_Chr8g0342471 66.279 86 28 1 8 92 5 90 3.40e-34 122
Msa0548620 MtrunA17_Chr4g0054391 55.340 103 45 1 11 112 8 110 6.60e-34 126
Msa0548620 MtrunA17_Chr8g0360111 52.830 106 50 0 10 115 20 125 6.45e-33 122
Msa0548620 MtrunA17_Chr5g0440781 41.667 144 77 3 16 158 13 150 7.35e-33 120
Msa0548620 MtrunA17_Chr4g0042611 62.821 78 29 0 14 91 11 88 7.73e-33 117
Msa0548620 MtrunA17_Chr4g0072751 53.922 102 46 1 13 113 10 111 1.02e-32 124
Msa0548620 MtrunA17_Chr6g0487491 48.413 126 56 2 11 127 8 133 1.09e-32 122
Msa0548620 MtrunA17_Chr7g0220341 51.351 111 52 1 11 119 21 131 1.92e-32 122
Msa0548620 MtrunA17_Chr5g0440761 41.667 144 77 3 16 158 13 150 2.28e-32 121
Msa0548620 MtrunA17_Chr5g0441141 41.667 144 77 3 16 158 13 150 2.71e-32 121
Msa0548620 MtrunA17_Chr5g0434841 51.429 105 51 0 15 119 20 124 2.79e-32 122
Msa0548620 MtrunA17_Chr7g0228991 51.429 105 51 0 15 119 29 133 8.26e-32 120
Msa0548620 MtrunA17_Chr8g0334881 41.447 152 76 3 10 149 5 155 3.88e-31 119
Msa0548620 MtrunA17_Chr5g0441131 50.000 106 52 1 16 120 10 115 3.66e-30 113
Msa0548620 MtrunA17_Chr5g0395221 62.500 80 30 0 12 91 9 88 1.70e-29 108
Msa0548620 MtrunA17_Chr4g0013361 45.833 120 64 1 15 133 10 129 2.82e-29 114
Msa0548620 MtrunA17_Chr4g0053431 39.205 176 88 5 17 180 5 173 9.45e-29 112
Msa0548620 MtrunA17_Chr2g0323321 60.000 85 34 0 11 95 7 91 2.00e-28 106
Msa0548620 MtrunA17_Chr3g0099141 52.941 85 40 0 13 97 38 122 5.41e-28 106
Msa0548620 MtrunA17_Chr6g0454921 48.113 106 54 1 17 122 15 119 1.03e-27 107
Msa0548620 MtrunA17_Chr5g0401731 48.113 106 54 1 17 122 15 119 1.16e-27 110
Msa0548620 MtrunA17_Chr5g0429661 40.288 139 79 2 15 150 120 257 1.43e-27 110
Msa0548620 MtrunA17_Chr2g0294811 59.740 77 31 0 15 91 12 88 2.02e-27 103
Msa0548620 MtrunA17_Chr4g0008551 50.980 102 49 1 17 118 38 138 5.17e-27 108
Msa0548620 MtrunA17_Chr3g0133601 47.863 117 60 1 17 133 37 152 4.44e-26 103
Msa0548620 MtrunA17_Chr7g0238631 46.296 108 57 1 12 119 108 214 1.23e-25 107
Msa0548620 MtrunA17_Chr3g0139671 46.296 108 57 1 12 119 80 186 1.42e-25 107
Msa0548620 MtrunA17_Chr3g0117511 44.444 117 62 2 2 118 170 283 3.70e-25 105
Msa0548620 MtrunA17_Chr5g0434901 60.294 68 27 0 49 116 7 74 3.38e-24 95.5
Msa0548620 MtrunA17_Chr7g0229101 60.000 70 28 0 47 116 4 73 4.44e-24 97.8
Msa0548620 MtrunA17_Chr6g0460661 40.171 117 67 2 12 127 11 125 4.52e-24 96.7
Msa0548620 MtrunA17_Chr5g0437321 47.664 107 55 1 9 115 11 116 1.03e-23 98.6
Msa0548620 MtrunA17_Chr4g0058991 41.818 110 63 1 9 118 201 309 1.16e-23 100
Msa0548620 MtrunA17_Chr6g0480581 45.545 101 54 1 17 117 4 103 1.25e-23 97.4
Msa0548620 MtrunA17_Chr7g0229131 57.746 71 30 0 47 117 4 74 1.29e-23 95.5
Msa0548620 MtrunA17_Chr5g0425591 51.220 82 39 1 16 96 10 91 1.31e-23 93.2
Msa0548620 MtrunA17_Chr6g0460671 42.735 117 65 2 12 127 93 208 1.81e-23 99.4
Msa0548620 MtrunA17_Chr5g0417621 41.441 111 64 1 13 123 130 239 4.26e-23 99.4
Msa0548620 MtrunA17_Chr1g0157731 43.519 108 60 1 12 119 86 192 4.38e-23 100
Msa0548620 MtrunA17_Chr4g0042501 39.850 133 76 3 5 136 94 223 4.56e-23 99.0
Msa0548620 MtrunA17_Chr6g0453751 46.392 97 43 2 9 96 14 110 2.12e-21 88.6
Msa0548620 MtrunA17_Chr1g0177901 40.000 130 68 3 27 156 7 126 3.78e-21 90.1
Msa0548620 MtrunA17_Chr3g0093811 47.674 86 42 1 40 122 4 89 1.48e-20 89.7
Msa0548620 MtrunA17_Chr7g0228531 42.202 109 60 3 17 125 220 325 2.32e-20 91.3
Msa0548620 MtrunA17_Chr5g0397841 44.118 102 56 1 11 112 104 204 4.15e-20 90.9
Msa0548620 MtrunA17_Chr3g0125801 42.593 108 59 2 17 123 16 121 4.95e-20 88.6
Msa0548620 MtrunA17_Chr7g0228401 47.191 89 44 2 36 124 298 383 1.97e-19 89.0
Msa0548620 MtrunA17_Chr7g0254261 42.157 102 58 1 17 118 89 189 1.13e-18 85.9
Msa0548620 MtrunA17_Chr7g0233061 38.261 115 68 3 17 131 180 291 4.72e-18 84.0
Msa0548620 MtrunA17_Chr7g0228481 39.450 109 63 3 17 125 220 325 5.39e-17 81.3
Msa0548620 MtrunA17_Chr1g0193901 50.000 92 44 2 7 96 3 94 1.46e-16 74.7
Msa0548620 MtrunA17_Chr1g0193891 50.000 92 44 2 7 96 3 94 1.46e-16 74.7
Msa0548620 MtrunA17_Chr1g0193871 50.000 92 44 2 7 96 3 94 1.46e-16 74.7
Msa0548620 MtrunA17_Chr1g0193881 50.000 92 44 2 7 96 3 94 1.46e-16 74.7
Msa0548620 MtrunA17_Chr7g0238651 39.362 94 55 1 20 111 10 103 6.59e-16 77.8
Msa0548620 MtrunA17_Chr5g0416341 36.634 101 63 1 20 120 29 128 7.93e-16 78.2
Msa0548620 MtrunA17_Chr8g0362231 36.283 113 70 2 20 131 25 136 1.29e-15 77.4
Msa0548620 MtrunA17_Chr5g0434871 60.465 43 17 0 77 119 2 44 1.39e-13 65.1
Msa0548620 MtrunA17_Chr3g0104491 38.272 81 45 2 56 132 1 80 1.48e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548620 AT3G08500.1 46.448 366 133 15 1 331 3 340 8.31e-75 234
Msa0548620 AT5G12870.1 82.540 126 19 1 1 123 1 126 4.26e-71 223
Msa0548620 AT1G09540.1 79.439 107 22 0 14 120 11 117 7.50e-59 194
Msa0548620 AT5G26660.1 79.439 107 22 0 14 120 11 117 7.86e-58 191
Msa0548620 AT1G57560.1 78.302 106 23 0 14 119 11 116 1.07e-57 189
Msa0548620 AT1G57560.2 78.302 106 23 0 14 119 11 116 1.17e-57 188
Msa0548620 AT3G13890.2 75.229 109 27 0 11 119 8 116 1.47e-57 190
Msa0548620 AT4G01680.3 77.570 107 24 0 14 120 11 117 2.49e-57 186
Msa0548620 AT4G01680.1 77.570 107 24 0 14 120 11 117 1.77e-56 187
Msa0548620 AT3G13890.1 69.492 118 27 1 11 119 8 125 1.58e-54 182
Msa0548620 AT1G63910.1 68.182 110 35 0 11 120 8 117 5.71e-53 179
Msa0548620 AT4G01680.2 69.748 119 24 1 14 120 11 129 6.38e-53 178
Msa0548620 AT3G12720.1 67.925 106 34 0 14 119 21 126 3.72e-50 169
Msa0548620 AT4G05100.1 68.519 108 34 0 15 122 13 120 9.24e-50 169
Msa0548620 AT4G21440.1 68.519 108 34 0 15 122 12 119 3.01e-49 168
Msa0548620 AT2G16720.1 51.829 164 66 2 17 178 14 166 6.08e-49 165
Msa0548620 AT5G54230.1 67.593 108 35 0 15 122 12 119 1.38e-48 166
Msa0548620 AT1G22640.1 61.864 118 43 1 13 130 10 125 3.28e-48 163
Msa0548620 AT3G02940.2 56.061 132 51 1 11 142 8 132 5.45e-48 164
Msa0548620 AT5G10280.1 63.393 112 41 0 11 122 8 119 8.24e-48 164
Msa0548620 AT3G02940.1 56.061 132 51 1 11 142 8 132 9.92e-48 163
Msa0548620 AT3G02940.3 56.061 132 51 1 11 142 8 132 9.92e-48 163
Msa0548620 AT4G12350.1 63.717 113 41 0 15 127 12 124 1.20e-47 162
Msa0548620 AT4G09460.1 66.990 103 34 0 17 119 14 116 1.35e-47 160
Msa0548620 AT4G34990.1 67.961 103 33 0 17 119 14 116 1.49e-47 162
Msa0548620 AT3G01140.2 65.741 108 37 0 15 122 12 119 2.49e-47 163
Msa0548620 AT4G38620.1 66.667 105 35 0 17 121 14 118 4.44e-47 160
Msa0548620 AT5G65230.1 64.815 108 38 0 15 122 12 119 5.42e-47 161
Msa0548620 AT4G28110.1 66.667 105 35 0 15 119 12 116 6.52e-47 160
Msa0548620 AT3G01140.1 63.393 112 41 0 11 122 51 162 6.77e-47 163
Msa0548620 AT5G15310.4 64.815 108 38 0 15 122 12 119 7.69e-47 159
Msa0548620 AT5G15310.1 64.815 108 38 0 15 122 12 119 9.49e-47 161
Msa0548620 AT5G15310.2 64.815 108 38 0 15 122 12 119 1.10e-46 160
Msa0548620 AT5G61420.2 46.988 166 87 1 15 180 12 176 1.36e-46 162
Msa0548620 AT2G31180.1 53.147 143 64 2 15 156 12 152 1.64e-46 158
Msa0548620 AT5G60890.1 53.125 128 56 1 15 138 12 139 2.22e-46 159
Msa0548620 AT3G48920.1 64.815 108 38 0 10 117 13 120 2.92e-46 158
Msa0548620 AT5G14340.1 56.923 130 53 1 15 141 24 153 5.34e-46 157
Msa0548620 AT5G14750.1 57.500 120 50 1 1 119 1 120 5.94e-46 155
Msa0548620 AT1G66230.1 65.741 108 37 0 15 122 12 119 7.54e-46 157
Msa0548620 AT4G25560.1 63.025 119 43 1 6 123 1 119 1.15e-45 157
Msa0548620 AT1G34670.1 62.963 108 40 0 15 122 12 119 1.94e-45 159
Msa0548620 AT3G27920.1 48.649 148 70 1 10 157 9 150 2.28e-45 154
Msa0548620 AT3G61250.1 62.037 108 41 0 15 122 12 119 2.44e-45 157
Msa0548620 AT5G16600.1 63.889 108 39 0 15 122 12 119 2.89e-45 157
Msa0548620 AT5G16770.4 54.688 128 51 1 15 142 12 132 4.24e-45 157
Msa0548620 AT5G16770.3 54.688 128 51 1 15 142 12 132 4.24e-45 157
Msa0548620 AT3G23250.1 60.748 107 42 0 15 121 12 118 5.08e-45 155
Msa0548620 AT1G35515.1 60.550 109 43 0 13 121 10 118 6.22e-45 153
Msa0548620 AT1G74430.1 64.762 105 37 0 15 119 12 116 7.32e-45 154
Msa0548620 AT5G16770.1 54.688 128 51 1 15 142 12 132 7.59e-45 156
Msa0548620 AT5G16770.2 54.688 128 51 1 15 142 12 132 7.59e-45 156
Msa0548620 AT1G18570.1 64.762 105 37 0 15 119 13 117 8.20e-45 157
Msa0548620 AT5G52600.1 43.503 177 90 2 5 173 2 176 9.96e-45 152
Msa0548620 AT3G27810.1 46.429 168 80 2 13 179 18 176 1.06e-44 153
Msa0548620 AT4G22680.1 62.963 108 40 0 15 122 12 119 1.21e-44 154
Msa0548620 AT1G06180.1 66.667 105 35 0 15 119 12 116 1.83e-44 153
Msa0548620 AT5G52260.1 69.903 103 31 0 16 118 13 115 2.02e-44 153
Msa0548620 AT5G40330.1 48.951 143 68 1 16 158 13 150 2.81e-44 151
Msa0548620 AT3G01530.1 56.452 124 53 1 3 125 12 135 9.07e-44 150
Msa0548620 AT2G47460.1 61.111 108 42 0 15 122 12 119 2.51e-43 153
Msa0548620 AT5G56110.1 60.550 109 43 0 15 123 12 120 3.62e-43 151
Msa0548620 AT5G07690.1 54.331 127 56 1 15 141 12 136 5.28e-43 151
Msa0548620 AT5G40350.1 57.407 108 46 0 12 119 14 121 5.79e-43 148
Msa0548620 AT5G07700.1 60.952 105 41 0 15 119 12 116 5.83e-43 151
Msa0548620 AT5G07700.2 60.952 105 41 0 15 119 12 116 5.83e-43 151
Msa0548620 AT1G56160.1 54.135 133 61 0 14 146 13 145 7.71e-43 150
Msa0548620 AT1G79180.1 56.000 125 55 0 11 135 10 134 9.87e-43 150
Msa0548620 AT4G17785.2 60.185 108 43 0 15 122 13 120 1.05e-42 151
Msa0548620 AT4G17785.1 60.185 108 43 0 15 122 13 120 1.24e-42 151
Msa0548620 AT1G16490.1 45.614 171 78 2 11 169 10 177 1.71e-42 148
Msa0548620 AT3G62610.1 56.198 121 48 1 15 130 12 132 4.08e-42 149
Msa0548620 AT5G62320.1 45.833 168 63 3 15 175 13 159 1.40e-41 145
Msa0548620 AT1G68320.1 55.856 111 49 0 12 122 16 126 2.26e-41 146
Msa0548620 AT5G49330.1 61.905 105 40 0 15 119 12 116 3.00e-41 147
Msa0548620 AT5G35550.1 63.208 106 39 0 14 119 13 118 4.15e-41 144
Msa0548620 AT3G13540.1 57.143 105 45 0 15 119 23 127 5.62e-41 144
Msa0548620 AT3G12820.1 58.716 109 45 0 11 119 10 118 5.97e-41 143
Msa0548620 AT1G74080.1 60.952 105 41 0 15 119 12 116 8.47e-41 145
Msa0548620 AT3G30210.1 62.037 108 41 0 16 123 28 135 1.94e-40 143
Msa0548620 AT1G18710.1 58.095 105 44 0 15 119 12 116 2.19e-40 143
Msa0548620 AT3G47600.1 57.407 108 46 0 15 122 12 119 2.99e-40 144
Msa0548620 AT1G08810.1 59.048 105 43 0 15 119 12 116 5.33e-40 142
Msa0548620 AT3G24310.1 61.321 106 41 0 16 121 19 124 5.67e-40 142
Msa0548620 AT1G48000.1 46.405 153 76 2 14 164 31 179 6.65e-40 140
Msa0548620 AT5G62470.2 56.481 108 47 0 15 122 12 119 1.45e-39 143
Msa0548620 AT4G26930.1 42.857 168 92 1 15 182 19 182 1.95e-39 143
Msa0548620 AT4G13480.1 57.658 111 47 0 16 126 7 117 2.05e-39 140
Msa0548620 AT1G74650.1 57.798 109 46 0 14 122 11 119 2.18e-39 142
Msa0548620 AT5G55020.1 57.547 106 45 0 15 120 26 131 2.73e-39 145
Msa0548620 AT2G47190.1 49.600 125 63 0 10 134 15 139 3.22e-39 140
Msa0548620 AT2G26960.1 43.293 164 82 2 17 170 22 184 3.44e-39 144
Msa0548620 AT3G49690.1 59.259 108 43 1 15 121 12 119 4.84e-39 140
Msa0548620 AT5G26660.2 78.481 79 17 0 42 120 8 86 5.90e-39 140
Msa0548620 AT2G32460.1 56.604 106 46 0 15 120 18 123 6.12e-39 144
Msa0548620 AT3G28470.1 59.223 103 42 0 11 113 8 110 6.72e-39 140
Msa0548620 AT2G32460.2 56.604 106 46 0 15 120 6 111 7.01e-39 144
Msa0548620 AT5G06100.1 57.547 106 45 0 15 120 32 137 7.47e-39 143
Msa0548620 AT5G65790.1 56.250 112 48 1 11 121 8 119 1.24e-38 141
Msa0548620 AT3G28910.1 54.464 112 51 0 15 126 12 123 1.54e-38 139
Msa0548620 AT5G06100.5 57.547 106 45 0 15 120 32 137 2.17e-38 143
Msa0548620 AT5G06100.2 57.547 106 45 0 15 120 32 137 2.17e-38 143
Msa0548620 AT5G06100.3 57.547 106 45 0 15 120 32 137 2.17e-38 143
Msa0548620 AT5G06100.4 57.547 106 45 0 15 120 32 137 2.17e-38 143
Msa0548620 AT1G25340.1 54.206 107 49 0 16 122 19 125 2.38e-38 138
Msa0548620 AT3G11440.2 54.630 108 49 0 13 120 39 146 5.40e-38 141
Msa0548620 AT5G62470.1 56.481 108 46 1 15 122 12 118 8.74e-38 138
Msa0548620 AT3G11440.3 54.630 108 49 0 13 120 39 146 2.01e-37 140
Msa0548620 AT3G11440.4 54.630 108 49 0 13 120 39 146 2.01e-37 140
Msa0548620 AT3G11440.1 54.630 108 49 0 13 120 39 146 2.01e-37 140
Msa0548620 AT5G23000.1 55.556 108 47 1 13 119 10 117 3.76e-37 136
Msa0548620 AT3G06490.1 57.407 108 46 0 15 122 19 126 8.11e-37 135
Msa0548620 AT1G79180.2 44.937 158 54 1 11 135 10 167 8.21e-37 135
Msa0548620 AT5G57620.1 56.604 106 45 1 15 119 12 117 1.33e-36 134
Msa0548620 AT5G59780.3 52.212 113 54 0 16 128 9 121 5.51e-36 130
Msa0548620 AT3G46130.1 51.327 113 55 0 16 128 10 122 1.14e-35 130
Msa0548620 AT3G53200.1 54.128 109 50 0 10 118 4 112 5.80e-35 127
Msa0548620 AT2G36890.1 51.818 110 52 1 11 119 8 117 2.02e-34 128
Msa0548620 AT2G36890.2 51.818 110 52 1 11 119 49 158 3.82e-34 128
Msa0548620 AT5G49620.1 51.786 112 54 0 15 126 26 137 5.96e-34 127
Msa0548620 AT4G37780.1 52.830 106 49 1 15 119 12 117 6.89e-34 127
Msa0548620 AT1G25340.2 51.402 107 47 1 16 122 19 120 1.68e-33 125
Msa0548620 AT1G66370.1 50.909 110 54 0 9 118 2 111 2.25e-33 124
Msa0548620 AT1G25340.3 51.402 107 47 1 16 122 19 120 2.87e-33 125
Msa0548620 AT2G26950.1 45.378 119 64 1 17 135 18 135 2.79e-32 124
Msa0548620 AT5G35550.2 72.727 77 21 0 43 119 45 121 3.83e-32 121
Msa0548620 AT3G27810.2 46.617 133 61 2 48 179 4 127 1.38e-31 117
Msa0548620 AT1G66380.1 48.819 127 57 1 15 133 8 134 3.39e-31 115
Msa0548620 AT3G47600.2 48.819 127 58 3 27 153 22 141 3.40e-31 120
Msa0548620 AT3G60460.1 44.898 147 75 3 1 146 1 142 9.10e-31 118
Msa0548620 AT3G12820.2 72.464 69 19 0 51 119 2 70 2.31e-30 114
Msa0548620 AT5G49620.2 46.032 126 54 1 15 126 26 151 2.48e-30 117
Msa0548620 AT5G14750.3 68.116 69 22 0 51 119 18 86 3.49e-30 113
Msa0548620 AT5G40350.2 63.514 74 27 0 46 119 3 76 5.48e-30 112
Msa0548620 AT1G56650.1 54.808 104 47 0 15 118 8 111 7.01e-30 114
Msa0548620 AT1G66390.1 54.808 104 47 0 15 118 8 111 3.78e-29 112
Msa0548620 AT3G46130.3 57.317 82 35 0 47 128 9 90 7.14e-29 111
Msa0548620 AT5G59780.2 58.025 81 34 0 48 128 20 100 1.19e-28 110
Msa0548620 AT3G46130.4 58.025 81 34 0 48 128 20 100 1.55e-28 110
Msa0548620 AT3G53200.2 64.789 71 25 0 48 118 9 79 3.59e-27 106
Msa0548620 AT5G11050.1 28.899 218 143 3 17 232 105 312 1.48e-26 109
Msa0548620 AT4G18770.1 41.135 141 79 3 13 152 213 350 3.29e-26 108
Msa0548620 AT5G67300.1 42.063 126 63 2 17 142 6 121 8.65e-26 105
Msa0548620 AT3G50060.1 40.625 128 75 1 17 144 6 132 1.35e-25 104
Msa0548620 AT5G40360.1 40.678 118 68 2 10 127 151 266 1.61e-25 105
Msa0548620 AT3G09230.1 43.284 134 71 2 8 137 46 178 1.95e-25 105
Msa0548620 AT3G55730.1 38.922 167 92 4 17 181 56 214 2.01e-25 105
Msa0548620 AT2G39880.1 49.107 112 55 2 7 118 41 150 6.70e-25 103
Msa0548620 AT4G37260.1 46.789 109 57 1 10 118 6 113 7.60e-25 102
Msa0548620 AT1G69560.1 31.250 208 124 5 11 204 101 303 1.02e-24 102
Msa0548620 AT3G27785.1 42.857 119 63 3 1 118 175 289 1.09e-24 103
Msa0548620 AT5G02320.3 42.623 122 67 2 12 131 62 182 1.10e-24 104
Msa0548620 AT5G02320.1 42.623 122 67 2 12 131 122 242 1.23e-24 104
Msa0548620 AT5G02320.2 42.623 122 67 2 12 131 122 242 1.23e-24 104
Msa0548620 AT1G69560.2 31.250 208 124 5 11 204 117 319 1.41e-24 102
Msa0548620 AT1G22640.3 65.714 70 22 1 61 130 1 68 1.58e-24 99.4
Msa0548620 AT3G09370.1 45.794 107 57 1 12 118 125 230 6.97e-24 102
Msa0548620 AT3G09370.2 45.794 107 57 1 12 118 130 235 7.49e-24 102
Msa0548620 AT5G58850.1 40.602 133 73 3 7 134 94 225 8.30e-24 101
Msa0548620 AT3G09370.3 45.794 107 57 1 12 118 138 243 9.56e-24 102
Msa0548620 AT2G23290.1 47.059 102 53 1 17 118 13 113 1.61e-23 99.0
Msa0548620 AT3G23250.2 65.574 61 21 0 61 121 1 61 2.77e-23 96.7
Msa0548620 AT1G17950.1 43.925 107 59 1 17 123 5 110 3.82e-23 96.7
Msa0548620 AT1G26780.1 44.144 111 59 2 15 124 96 204 5.97e-23 97.1
Msa0548620 AT1G26780.2 44.144 111 59 2 15 124 96 204 6.19e-23 98.2
Msa0548620 AT5G11510.3 43.519 108 60 1 12 119 76 182 6.89e-23 100
Msa0548620 AT5G11510.1 43.519 108 60 1 12 119 76 182 6.89e-23 100
Msa0548620 AT5G11510.4 43.519 108 60 1 12 119 76 182 6.89e-23 100
Msa0548620 AT2G25230.1 42.991 107 59 2 20 126 29 133 8.11e-23 95.5
Msa0548620 AT5G11510.2 43.519 108 60 1 12 119 76 182 8.65e-23 99.8
Msa0548620 AT5G11510.5 43.519 108 60 1 12 119 76 182 1.04e-22 99.4
Msa0548620 AT1G66380.3 50.526 95 39 1 47 133 7 101 1.08e-22 91.3
Msa0548620 AT4G32730.5 41.667 108 62 1 12 119 82 188 6.54e-22 97.4
Msa0548620 AT4G32730.4 41.667 108 62 1 12 119 82 188 6.54e-22 97.4
Msa0548620 AT4G32730.3 41.667 108 62 1 12 119 82 188 6.54e-22 97.4
Msa0548620 AT4G32730.2 41.667 108 62 1 12 119 82 188 6.54e-22 97.4
Msa0548620 AT4G32730.1 41.667 108 62 1 12 119 82 188 6.90e-22 97.1
Msa0548620 AT3G29020.1 36.719 128 79 2 17 144 65 190 1.45e-21 92.0
Msa0548620 AT3G29020.2 36.719 128 79 2 17 144 67 192 2.83e-21 92.8
Msa0548620 AT5G14750.4 62.712 59 22 0 61 119 1 59 3.57e-21 88.6
Msa0548620 AT5G14750.2 62.712 59 22 0 61 119 1 59 3.57e-21 88.6
Msa0548620 AT1G73410.1 43.925 107 59 1 17 123 6 111 3.70e-21 91.3
Msa0548620 AT5G17800.1 39.823 113 67 1 8 120 84 195 5.96e-21 92.0
Msa0548620 AT4G33450.1 38.393 112 68 1 16 127 18 128 6.98e-21 90.5
Msa0548620 AT1G73410.2 43.925 107 59 1 17 123 6 111 1.04e-20 89.0
Msa0548620 AT1G71030.2 55.072 69 31 0 54 122 5 73 5.63e-20 86.3
Msa0548620 AT1G71030.1 55.072 69 31 0 54 122 19 87 7.88e-20 86.3
Msa0548620 AT4G00540.2 41.739 115 61 3 15 125 101 213 5.62e-19 87.4
Msa0548620 AT4G00540.1 41.739 115 61 3 15 125 99 211 9.64e-19 87.0
Msa0548620 AT1G18960.1 39.815 108 58 4 17 122 10 112 9.83e-19 85.5
Msa0548620 AT5G40430.1 37.302 126 74 4 3 126 38 160 1.07e-18 84.7
Msa0548620 AT2G02820.3 40.196 102 60 1 20 121 33 133 2.14e-18 85.1
Msa0548620 AT2G02820.1 40.196 102 60 1 20 121 33 133 2.45e-18 85.9
Msa0548620 AT2G02820.2 40.196 102 60 1 20 121 33 133 3.85e-18 85.5
Msa0548620 AT1G66380.2 53.846 78 36 0 15 92 8 85 4.24e-18 79.3
Msa0548620 AT2G37630.1 38.017 121 72 2 20 137 7 127 6.11e-17 81.3
Msa0548620 AT5G39700.1 33.088 136 84 2 13 148 52 180 3.62e-16 76.3
Msa0548620 AT1G14350.2 38.235 102 62 1 20 121 28 128 6.02e-16 78.6
Msa0548620 AT1G14350.1 38.235 102 62 1 20 121 28 128 6.02e-16 78.6
Msa0548620 AT5G59780.1 50.000 56 28 0 73 128 1 56 7.40e-14 69.3
Msa0548620 AT3G46130.2 50.000 56 28 0 73 128 1 56 1.17e-13 68.9
Msa0548620 AT4G25560.2 63.462 52 18 1 73 123 2 53 3.20e-13 68.6
Msa0548620 AT1G74650.3 64.286 42 15 0 81 122 2 43 8.24e-12 65.1
Msa0548620 AT5G61420.1 39.175 97 58 1 84 180 2 97 1.28e-11 64.7
Msa0548620 AT1G14350.3 44.444 63 35 0 59 121 23 85 1.66e-11 65.1
Msa0548620 AT1G14350.4 44.444 63 35 0 59 121 23 85 1.66e-11 65.1
Msa0548620 AT3G28910.2 54.348 46 21 0 81 126 2 47 2.29e-11 63.5

Find 75 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCATGTTACAACATTATTT+TGG 0.086652 4_1:+42865797 Msa0548620:three_prime_UTR
TTGCTTATTAATAGAGTTTC+TGG 0.138793 4_1:+42865945 Msa0548620:three_prime_UTR
ATCCATTTGCATTCCCTTCT+TGG 0.153405 4_1:+42863194 Msa0548620:CDS
TGACAGCAAAAGTTTCTATT+TGG 0.177929 4_1:+42865116 Msa0548620:CDS
CCCATGTTATGGTCTTTGTT+AGG 0.202900 4_1:-42864907 None:intergenic
GGTATAGAAGTTCATATCTT+AGG 0.250716 4_1:+42865839 Msa0548620:three_prime_UTR
AATACCATTATGTCTGGTTC+TGG 0.257266 4_1:+42865039 Msa0548620:CDS
ACAATGAAATCAAGAACTTT+TGG 0.281358 4_1:+42864806 Msa0548620:CDS
GGGAGTGTAAATATTATTAA+TGG 0.283826 4_1:+42865150 Msa0548620:CDS
ATTTCATTGTCTGTTCTTCC+AGG 0.287022 4_1:-42864793 None:intergenic
GAAAACACTTTGTTGAATCT+TGG 0.318474 4_1:-42865502 None:intergenic
TGCATTCCCTTCTTGGAAAC+AGG 0.336319 4_1:+42863201 Msa0548620:CDS
GAGATTTATCTGTTGGAGAT+TGG 0.356328 4_1:+42865415 Msa0548620:CDS
CAAATTGCGGCGCGCTTACC+TGG 0.371371 4_1:+42864775 Msa0548620:CDS
CCATGTTATGGTCTTTGTTA+GGG 0.387108 4_1:-42864906 None:intergenic
ATCTGTTGGAGATTGGGATT+TGG 0.391051 4_1:+42865422 Msa0548620:CDS
AGATTTATCTGTTGGAGATT+GGG 0.394773 4_1:+42865416 Msa0548620:CDS
AATATTATTAATGGTGTAGA+AGG 0.397124 4_1:+42865159 Msa0548620:CDS
TAAATAGTGGACAAGGTTGT+TGG 0.399936 4_1:+42863048 Msa0548620:CDS
ATACCATTATGTCTGGTTCT+GGG 0.402889 4_1:+42865040 Msa0548620:CDS
TTATAAAACCTCCCATGTTA+TGG 0.404725 4_1:-42864918 None:intergenic
GAGGTGGAGAATTTATTTCA+TGG 0.406594 4_1:+42865393 Msa0548620:CDS
CACAGAAAAGTTATTATATG+TGG 0.414549 4_1:+42865889 Msa0548620:three_prime_UTR
GAGGATTCATCGCTTGCGTT+TGG 0.417571 4_1:-42864877 None:intergenic
TTTGGGATGGTTTATTTGGA+GGG 0.422493 4_1:+42865815 Msa0548620:three_prime_UTR
ATACAGTACAGGGATTAATA+AGG 0.423386 4_1:+42865570 Msa0548620:three_prime_UTR
ATTATGTCTGGTTCTGGGTG+TGG 0.433859 4_1:+42865045 Msa0548620:CDS
TTTCATGGAGATTTATCTGT+TGG 0.445436 4_1:+42865408 Msa0548620:CDS
ATAAGCTTCTCATCTTCCTC+TGG 0.451621 4_1:-42863014 None:intergenic
ACACCCAGAACCAGACATAA+TGG 0.452955 4_1:-42865043 None:intergenic
AACAACTCTAAGCTTAGAAA+AGG 0.456430 4_1:+42862981 Msa0548620:CDS
GGGATGGTTTATTTGGAGGG+AGG 0.458406 4_1:+42865818 Msa0548620:three_prime_UTR
AGGAAGCCAGAGATTGCATC+TGG 0.463580 4_1:+42862954 Msa0548620:CDS
AGTTACACATTAACTTTATG+TGG 0.475439 4_1:+42865768 Msa0548620:three_prime_UTR
TTCCAAGAAGGGAATGCAAA+TGG 0.481023 4_1:-42863196 None:intergenic
TGGTGTAGAAGGAGATGAGA+TGG 0.483693 4_1:+42865170 Msa0548620:CDS
ATGAACTACATGTTAAATAG+TGG 0.487097 4_1:+42863035 Msa0548620:CDS
CCCAAAATAATGTTGTAACA+TGG 0.501705 4_1:-42865798 None:intergenic
TTCTTCAATAATAGTACTAC+AGG 0.501923 4_1:+42865069 Msa0548620:CDS
CCAAAATAATGTTGTAACAT+GGG 0.508155 4_1:-42865797 None:intergenic
GAAAAGTTATTATATGTGGT+TGG 0.509703 4_1:+42865893 Msa0548620:three_prime_UTR
AGTGATGTTGCTAGAAATGC+TGG 0.514684 4_1:+42863071 Msa0548620:CDS
TAACTACAGTAGGTTTCTGT+GGG 0.517033 4_1:-42865673 None:intergenic
TGTATATATTTAACTACAGT+AGG 0.521635 4_1:-42865683 None:intergenic
CAAAATAATGTTGTAACATG+GGG 0.530136 4_1:-42865796 None:intergenic
AATGCACCACGTTTAAGATC+AGG 0.532050 4_1:-42863146 None:intergenic
AATGCATGCAATGGAGAAGA+TGG 0.536091 4_1:+42865270 Msa0548620:CDS
TTAACTACAGTAGGTTTCTG+TGG 0.545247 4_1:-42865674 None:intergenic
TCTACATCAAGGTGAGGGTG+AGG 0.553196 4_1:+42862914 None:intergenic
TCAAAGATGGTCTCAAATTG+CGG 0.554550 4_1:+42864762 Msa0548620:intron
AAGTGGACCTGTTTCCAAGA+AGG 0.565199 4_1:-42863208 None:intergenic
AGTGGACCTGTTTCCAAGAA+GGG 0.574708 4_1:-42863207 None:intergenic
GGAGATGAAGTATTGAACAT+AGG 0.583399 4_1:-42864985 None:intergenic
CTAAGCTTAGAAAAGGATTG+TGG 0.585725 4_1:+42862988 Msa0548620:CDS
CTACATCAAGGTGAGGGTGA+GGG 0.586014 4_1:+42862915 None:intergenic
ATGATATGTTCTTCTTCCTG+TGG 0.588188 4_1:-42863173 None:intergenic
CCCTAACAAAGACCATAACA+TGG 0.603188 4_1:+42864906 Msa0548620:CDS
TAGAGCTGATCATGATGAGG+TGG 0.613651 4_1:+42865377 Msa0548620:CDS
AATGCTGGATTGCAAAGATG+TGG 0.617901 4_1:+42863086 Msa0548620:CDS
TAAGATGGATCAATTACTTG+AGG 0.619133 4_1:+42863123 Msa0548620:CDS
GTCTTTGTTAGGGTCGTACG+AGG 0.620442 4_1:-42864896 None:intergenic
ACGTGGTGCATTCTCACCAC+AGG 0.629748 4_1:+42863157 Msa0548620:CDS
AAAAGGATTGTGGTCACCAG+AGG 0.635321 4_1:+42862998 Msa0548620:CDS
AAAATGGAGAATGCATGCAA+TGG 0.638345 4_1:+42865261 Msa0548620:CDS
TTAGTATTAACACTCTCTAG+AGG 0.641496 4_1:-42865210 None:intergenic
AGTACAGGGATTAATAAGGT+AGG 0.643047 4_1:+42865574 Msa0548620:three_prime_UTR
GTATTAACACTCTCTAGAGG+AGG 0.651371 4_1:-42865207 None:intergenic
AAAATAATGTTGTAACATGG+GGG 0.657543 4_1:-42865795 None:intergenic
TACATGTTAAATAGTGGACA+AGG 0.672810 4_1:+42863041 Msa0548620:CDS
AAATAATGTTGTAACATGGG+GGG 0.672902 4_1:-42865794 None:intergenic
AACAAAGACCATAACATGGG+AGG 0.678788 4_1:+42864910 Msa0548620:CDS
TTGAGGCCTGATCTTAAACG+TGG 0.683943 4_1:+42863140 Msa0548620:CDS
CCTAACAAAGACCATAACAT+GGG 0.690044 4_1:+42864907 Msa0548620:CDS
AGGGATTCAATAGTACAATG+AGG 0.697652 4_1:+42862934 Msa0548620:exon
AAATAGAGCTGATCATGATG+AGG 0.716489 4_1:+42865374 Msa0548620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTATAATAATAAAAAA+AGG + chr4_1:42863529-42863548 Msa0548620:intron 0.0%
!!! ATTTTATAATAATAAAAAAA+GGG + chr4_1:42863530-42863549 Msa0548620:intron 0.0%
!!! TTCATCATTTTATTAAAAAT+TGG - chr4_1:42863511-42863530 None:intergenic 10.0%
!! TTCTCAAATTAAGATAAATT+TGG - chr4_1:42863329-42863348 None:intergenic 15.0%
!!! AATTCTAAAAAATAGTCTAA+AGG - chr4_1:42863606-42863625 None:intergenic 15.0%
!! TCATAAATTAAAACATGAAA+AGG + chr4_1:42863974-42863993 Msa0548620:intron 15.0%
!!! AAATATAAAGGTGTAAAAAA+TGG - chr4_1:42865536-42865555 None:intergenic 15.0%
!!! GATAAATAAATTGATGATCT+AGG - chr4_1:42863244-42863263 None:intergenic 20.0%
!! ATATTATACATACTCATGTT+TGG - chr4_1:42863455-42863474 None:intergenic 20.0%
!! AAACATGAGTATGTATAATA+TGG + chr4_1:42863454-42863473 Msa0548620:intron 20.0%
!!! CATCTTTAAAACATTTTTTG+AGG - chr4_1:42863481-42863500 None:intergenic 20.0%
!!! CTCAAAAAATGTTTTAAAGA+TGG + chr4_1:42863479-42863498 Msa0548620:intron 20.0%
!!! TACATAGCTATTTTTTTCAT+GGG - chr4_1:42863695-42863714 None:intergenic 20.0%
!!! ATACATAGCTATTTTTTTCA+TGG - chr4_1:42863696-42863715 None:intergenic 20.0%
!! ATACACAACAATATAGTATA+TGG + chr4_1:42863783-42863802 Msa0548620:intron 20.0%
!! TTTCTATATCATAAATGATC+AGG - chr4_1:42863862-42863881 None:intergenic 20.0%
!! GTCTAAAAAATCTAAATCTT+TGG - chr4_1:42863950-42863969 None:intergenic 20.0%
!! ACAACAAATTTAAATCACTT+GGG - chr4_1:42864099-42864118 None:intergenic 20.0%
!! AACAACAAATTTAAATCACT+TGG - chr4_1:42864100-42864119 None:intergenic 20.0%
!! TACAATTGAAAACAACATAT+AGG + chr4_1:42864344-42864363 Msa0548620:intron 20.0%
!! TTTACTGTCTATTTCATAAA+TGG + chr4_1:42864543-42864562 Msa0548620:intron 20.0%
!! AAAGATTATACATGAATAGA+AGG - chr4_1:42864662-42864681 None:intergenic 20.0%
!! TTCTATTTGGAAAAAATGTT+TGG + chr4_1:42865129-42865148 Msa0548620:CDS 20.0%
!! TCTATTTGGAAAAAATGTTT+GGG + chr4_1:42865130-42865149 Msa0548620:CDS 20.0%
!! AATATTATTAATGGTGTAGA+AGG + chr4_1:42865159-42865178 Msa0548620:CDS 20.0%
!! CAGCAAAAATACAAATATAA+AGG - chr4_1:42865548-42865567 None:intergenic 20.0%
!! TGTATATATTTAACTACAGT+AGG - chr4_1:42865686-42865705 None:intergenic 20.0%
! ATGAACTACATGTTAAATAG+TGG + chr4_1:42863035-42863054 Msa0548620:CDS 25.0%
! CCAATATATGGAATCAAATT+TGG - chr4_1:42863276-42863295 None:intergenic 25.0%
! CCAAATTTGATTCCATATAT+TGG + chr4_1:42863273-42863292 Msa0548620:intron 25.0%
! TAAATTAAGGAGCCAATATA+TGG - chr4_1:42863288-42863307 None:intergenic 25.0%
!!! GAAGATAACCATTTTTACAT+TGG + chr4_1:42863346-42863365 Msa0548620:intron 25.0%
! GATAACTTGAGAGAAAAAAA+TGG - chr4_1:42863642-42863661 None:intergenic 25.0%
! TAACTAAATAGTATTACGAG+AGG + chr4_1:42864591-42864610 Msa0548620:intron 25.0%
!! ACAATGAAATCAAGAACTTT+TGG + chr4_1:42864806-42864825 Msa0548620:CDS 25.0%
! TTCTTCAATAATAGTACTAC+AGG + chr4_1:42865069-42865088 Msa0548620:CDS 25.0%
!! GGGAGTGTAAATATTATTAA+TGG + chr4_1:42865150-42865169 Msa0548620:CDS 25.0%
! TTGTGAACATAGTGTAAAAA+TGG + chr4_1:42865245-42865264 Msa0548620:CDS 25.0%
! CAGTTTGAAAAATCAAGAAA+TGG - chr4_1:42865477-42865496 None:intergenic 25.0%
! AGTTACACATTAACTTTATG+TGG + chr4_1:42865768-42865787 Msa0548620:three_prime_UTR 25.0%
! AAAATAATGTTGTAACATGG+GGG - chr4_1:42865798-42865817 None:intergenic 25.0%
! CAAAATAATGTTGTAACATG+GGG - chr4_1:42865799-42865818 None:intergenic 25.0%
! CCAAAATAATGTTGTAACAT+GGG - chr4_1:42865800-42865819 None:intergenic 25.0%
!! CCATGTTACAACATTATTTT+GGG + chr4_1:42865798-42865817 Msa0548620:three_prime_UTR 25.0%
!!! TTATTTTGGGATGGTTTATT+TGG + chr4_1:42865811-42865830 Msa0548620:three_prime_UTR 25.0%
! CACAGAAAAGTTATTATATG+TGG + chr4_1:42865889-42865908 Msa0548620:three_prime_UTR 25.0%
! GAAAAGTTATTATATGTGGT+TGG + chr4_1:42865893-42865912 Msa0548620:three_prime_UTR 25.0%
AACAACTCTAAGCTTAGAAA+AGG + chr4_1:42862981-42863000 Msa0548620:CDS 30.0%
!! TACATGTTAAATAGTGGACA+AGG + chr4_1:42863041-42863060 Msa0548620:CDS 30.0%
AAAGATGTGGAAAAAGTTGT+AGG + chr4_1:42863099-42863118 Msa0548620:CDS 30.0%
TAAGATGGATCAATTACTTG+AGG + chr4_1:42863123-42863142 Msa0548620:CDS 30.0%
TTAAGGAGCCAATGTAAAAA+TGG - chr4_1:42863357-42863376 None:intergenic 30.0%
CTCCTTAATTCACAATTTAG+TGG + chr4_1:42863369-42863388 Msa0548620:intron 30.0%
GTCCACTAAATTGTGAATTA+AGG - chr4_1:42863374-42863393 None:intergenic 30.0%
!!! ATTTTGAAACAGTTGTGCTA+TGG + chr4_1:42863716-42863735 Msa0548620:intron 30.0%
AAATTGTCTGTCTCTCTAAA+TGG - chr4_1:42864160-42864179 None:intergenic 30.0%
! GAGACAGACAATTTTGTAAA+AGG + chr4_1:42864166-42864185 Msa0548620:intron 30.0%
AATTAGTTGTGTCGTATCTT+AGG - chr4_1:42864227-42864246 None:intergenic 30.0%
! TTGTACTTTTGTCTTCTACA+AGG - chr4_1:42864329-42864348 None:intergenic 30.0%
ACTGTGATTTCGTCTTTATT+TGG + chr4_1:42864368-42864387 Msa0548620:intron 30.0%
TTTGAACAATACACGTAGTA+TGG - chr4_1:42864413-42864432 None:intergenic 30.0%
ATAGTATTACGAGAGGAAAT+AGG + chr4_1:42864598-42864617 Msa0548620:intron 30.0%
! TTGTGCTTCATTTTCAAAGA+TGG + chr4_1:42864749-42864768 Msa0548620:intron 30.0%
TTATAAAACCTCCCATGTTA+TGG - chr4_1:42864921-42864940 None:intergenic 30.0%
! AAAACTGTGTTTTGCATTGT+TGG - chr4_1:42865018-42865037 None:intergenic 30.0%
! GTTTTCAATACCATTATGTC+TGG + chr4_1:42865033-42865052 Msa0548620:CDS 30.0%
TGACAGCAAAAGTTTCTATT+TGG + chr4_1:42865116-42865135 Msa0548620:CDS 30.0%
TTAGTATTAACACTCTCTAG+AGG - chr4_1:42865213-42865232 None:intergenic 30.0%
TTTCATGGAGATTTATCTGT+TGG + chr4_1:42865408-42865427 Msa0548620:CDS 30.0%
AGATTTATCTGTTGGAGATT+GGG + chr4_1:42865416-42865435 Msa0548620:CDS 30.0%
GAAAACACTTTGTTGAATCT+TGG - chr4_1:42865505-42865524 None:intergenic 30.0%
!!! TTTTTGCTGTTATACAGTAC+AGG + chr4_1:42865559-42865578 Msa0548620:three_prime_UTR 30.0%
!!! TTTTGCTGTTATACAGTACA+GGG + chr4_1:42865560-42865579 Msa0548620:three_prime_UTR 30.0%
ATACAGTACAGGGATTAATA+AGG + chr4_1:42865570-42865589 Msa0548620:three_prime_UTR 30.0%
AAATAATGTTGTAACATGGG+GGG - chr4_1:42865797-42865816 None:intergenic 30.0%
! CCCATGTTACAACATTATTT+TGG + chr4_1:42865797-42865816 Msa0548620:three_prime_UTR 30.0%
CCCAAAATAATGTTGTAACA+TGG - chr4_1:42865801-42865820 None:intergenic 30.0%
!!! GTTACAACATTATTTTGGGA+TGG + chr4_1:42865802-42865821 Msa0548620:three_prime_UTR 30.0%
GGTATAGAAGTTCATATCTT+AGG + chr4_1:42865839-42865858 Msa0548620:three_prime_UTR 30.0%
! CATATCTTAGGTTTTCAGAT+TGG + chr4_1:42865851-42865870 Msa0548620:three_prime_UTR 30.0%
AGGGATTCAATAGTACAATG+AGG + chr4_1:42862934-42862953 Msa0548620:exon 35.0%
!!! TTTTTTCCAGATGCAATCTC+TGG - chr4_1:42862963-42862982 None:intergenic 35.0%
CTAAGCTTAGAAAAGGATTG+TGG + chr4_1:42862988-42863007 Msa0548620:CDS 35.0%
!! TAAATAGTGGACAAGGTTGT+TGG + chr4_1:42863048-42863067 Msa0548620:CDS 35.0%
GAAAAAGTTGTAGGCTAAGA+TGG + chr4_1:42863108-42863127 Msa0548620:CDS 35.0%
ATGATATGTTCTTCTTCCTG+TGG - chr4_1:42863176-42863195 None:intergenic 35.0%
ATCTAGGTAGAAAAGTGAAG+TGG - chr4_1:42863228-42863247 None:intergenic 35.0%
TAGATTTCACCTCTTGATGT+GGG - chr4_1:42863668-42863687 None:intergenic 35.0%
ATAGATTTCACCTCTTGATG+TGG - chr4_1:42863669-42863688 None:intergenic 35.0%
TCAAAGATGGTCTCAAATTG+CGG + chr4_1:42864762-42864781 Msa0548620:intron 35.0%
ATTTCATTGTCTGTTCTTCC+AGG - chr4_1:42864796-42864815 None:intergenic 35.0%
CCATGTTATGGTCTTTGTTA+GGG - chr4_1:42864909-42864928 None:intergenic 35.0%
CCTAACAAAGACCATAACAT+GGG + chr4_1:42864907-42864926 Msa0548620:CDS 35.0%
!! GGAGATGAAGTATTGAACAT+AGG - chr4_1:42864988-42865007 None:intergenic 35.0%
! AATACCATTATGTCTGGTTC+TGG + chr4_1:42865039-42865058 Msa0548620:CDS 35.0%
!! ATACCATTATGTCTGGTTCT+GGG + chr4_1:42865040-42865059 Msa0548620:CDS 35.0%
AAAATGGAGAATGCATGCAA+TGG + chr4_1:42865261-42865280 Msa0548620:CDS 35.0%
AAATAGAGCTGATCATGATG+AGG + chr4_1:42865374-42865393 Msa0548620:CDS 35.0%
GAGGTGGAGAATTTATTTCA+TGG + chr4_1:42865393-42865412 Msa0548620:CDS 35.0%
GAGATTTATCTGTTGGAGAT+TGG + chr4_1:42865415-42865434 Msa0548620:CDS 35.0%
AGTACAGGGATTAATAAGGT+AGG + chr4_1:42865574-42865593 Msa0548620:three_prime_UTR 35.0%
TAACTACAGTAGGTTTCTGT+GGG - chr4_1:42865676-42865695 None:intergenic 35.0%
TTAACTACAGTAGGTTTCTG+TGG - chr4_1:42865677-42865696 None:intergenic 35.0%
!!! TTTTGGGATGGTTTATTTGG+AGG + chr4_1:42865814-42865833 Msa0548620:three_prime_UTR 35.0%
! TTTGGGATGGTTTATTTGGA+GGG + chr4_1:42865815-42865834 Msa0548620:three_prime_UTR 35.0%
ATAAGCTTCTCATCTTCCTC+TGG - chr4_1:42863017-42863036 None:intergenic 40.0%
AGTGATGTTGCTAGAAATGC+TGG + chr4_1:42863071-42863090 Msa0548620:CDS 40.0%
AATGCTGGATTGCAAAGATG+TGG + chr4_1:42863086-42863105 Msa0548620:CDS 40.0%
! AATGCACCACGTTTAAGATC+AGG - chr4_1:42863149-42863168 None:intergenic 40.0%
ATCCATTTGCATTCCCTTCT+TGG + chr4_1:42863194-42863213 Msa0548620:CDS 40.0%
TTCCAAGAAGGGAATGCAAA+TGG - chr4_1:42863199-42863218 None:intergenic 40.0%
TAAGCAGATCAAGACTTGTG+TGG + chr4_1:42863918-42863937 Msa0548620:intron 40.0%
! TTGTGTCGTATCTTAGGTTG+AGG - chr4_1:42864221-42864240 None:intergenic 40.0%
ACGAGAGGAAATAGGTCTAA+AGG + chr4_1:42864606-42864625 Msa0548620:intron 40.0%
!! ATAGGTCTAAAGGCATCTAG+CGG + chr4_1:42864616-42864635 Msa0548620:intron 40.0%
CCCTAACAAAGACCATAACA+TGG + chr4_1:42864906-42864925 Msa0548620:CDS 40.0%
CCCATGTTATGGTCTTTGTT+AGG - chr4_1:42864910-42864929 None:intergenic 40.0%
AACAAAGACCATAACATGGG+AGG + chr4_1:42864910-42864929 Msa0548620:CDS 40.0%
!!! TTTTGCATTGTTGGTGGTGA+TGG - chr4_1:42865009-42865028 None:intergenic 40.0%
! ACTGTGTTTTGCATTGTTGG+TGG - chr4_1:42865015-42865034 None:intergenic 40.0%
! GTATTAACACTCTCTAGAGG+AGG - chr4_1:42865210-42865229 None:intergenic 40.0%
AATGCATGCAATGGAGAAGA+TGG + chr4_1:42865270-42865289 Msa0548620:CDS 40.0%
ATCTGTTGGAGATTGGGATT+TGG + chr4_1:42865422-42865441 Msa0548620:CDS 40.0%
AAAAGGATTGTGGTCACCAG+AGG + chr4_1:42862998-42863017 Msa0548620:CDS 45.0%
TTGAGGCCTGATCTTAAACG+TGG + chr4_1:42863140-42863159 Msa0548620:CDS 45.0%
TGCATTCCCTTCTTGGAAAC+AGG + chr4_1:42863201-42863220 Msa0548620:CDS 45.0%
AGTGGACCTGTTTCCAAGAA+GGG - chr4_1:42863210-42863229 None:intergenic 45.0%
AAGTGGACCTGTTTCCAAGA+AGG - chr4_1:42863211-42863230 None:intergenic 45.0%
GTTATCTCACCCACATCAAG+AGG + chr4_1:42863656-42863675 Msa0548620:intron 45.0%
!! TGTCGTATCTTAGGTTGAGG+AGG - chr4_1:42864218-42864237 None:intergenic 45.0%
ACACCCAGAACCAGACATAA+TGG - chr4_1:42865046-42865065 None:intergenic 45.0%
!! ATTATGTCTGGTTCTGGGTG+TGG + chr4_1:42865045-42865064 Msa0548620:CDS 45.0%
TGGTGTAGAAGGAGATGAGA+TGG + chr4_1:42865170-42865189 Msa0548620:CDS 45.0%
TAGAGCTGATCATGATGAGG+TGG + chr4_1:42865377-42865396 Msa0548620:CDS 45.0%
!! ATAATAAGATAAATAAATTA+AGG - chr4_1:42863301-42863320 None:intergenic 5.0%
AGGAAGCCAGAGATTGCATC+TGG + chr4_1:42862954-42862973 Msa0548620:CDS 50.0%
CTGATGTCAAACACGCTGTC+AGG - chr4_1:42863754-42863773 None:intergenic 50.0%
CTGACAGCGTGTTTGACATC+AGG + chr4_1:42863752-42863771 Msa0548620:intron 50.0%
GAGGATTCATCGCTTGCGTT+TGG - chr4_1:42864880-42864899 None:intergenic 50.0%
GTCTTTGTTAGGGTCGTACG+AGG - chr4_1:42864899-42864918 None:intergenic 50.0%
GGGATGGTTTATTTGGAGGG+AGG + chr4_1:42865818-42865837 Msa0548620:three_prime_UTR 50.0%
ACGTGGTGCATTCTCACCAC+AGG + chr4_1:42863157-42863176 Msa0548620:CDS 55.0%
CAAATTGCGGCGCGCTTACC+TGG + chr4_1:42864775-42864794 Msa0548620:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 42862925 42865966 42862925 ID=Msa0548620;Name=Msa0548620
chr4_1 mRNA 42862925 42865966 42862925 ID=Msa0548620-mRNA-1;Parent=Msa0548620;Name=Msa0548620-mRNA-1;_AED=0.02;_eAED=0.02;_QI=26|1|1|1|1|1|2|469|333
chr4_1 exon 42862925 42863222 42862925 ID=Msa0548620-mRNA-1:exon:11055;Parent=Msa0548620-mRNA-1
chr4_1 exon 42864768 42865966 42864768 ID=Msa0548620-mRNA-1:exon:11056;Parent=Msa0548620-mRNA-1
chr4_1 five_prime_UTR 42862925 42862950 42862925 ID=Msa0548620-mRNA-1:five_prime_utr;Parent=Msa0548620-mRNA-1
chr4_1 CDS 42862951 42863222 42862951 ID=Msa0548620-mRNA-1:cds;Parent=Msa0548620-mRNA-1
chr4_1 CDS 42864768 42865497 42864768 ID=Msa0548620-mRNA-1:cds;Parent=Msa0548620-mRNA-1
chr4_1 three_prime_UTR 42865498 42865966 42865498 ID=Msa0548620-mRNA-1:three_prime_utr;Parent=Msa0548620-mRNA-1
Gene Sequence

>Msa0548620

ATGAGGAAGCCAGAGATTGCATCTGGAAAAAACAACTCTAAGCTTAGAAAAGGATTGTGGTCACCAGAGGAAGATGAGAAGCTTATGAACTACATGTTAAATAGTGGACAAGGTTGTTGGAGTGATGTTGCTAGAAATGCTGGATTGCAAAGATGTGGAAAAAGTTGTAGGCTAAGATGGATCAATTACTTGAGGCCTGATCTTAAACGTGGTGCATTCTCACCACAGGAAGAAGAACATATCATCCATTTGCATTCCCTTCTTGGAAACAGATGGTCTCAAATTGCGGCGCGCTTACCTGGAAGAACAGACAATGAAATCAAGAACTTTTGGAATTCAACAATAAAGAAAAGACTCAAGAACATGTCGTCGAACACTTCACCAAACGCAAGCGATGAATCCTCGTACGACCCTAACAAAGACCATAACATGGGAGGTTTTATAACTTCTTCAACACAAGATCAACAACATATTGATAATCATTTTATGCCTATGTTCAATACTTCATCTCCATCACCACCAACAATGCAAAACACAGTTTTCAATACCATTATGTCTGGTTCTGGGTGTGGATTCTTCAATAATAGTACTACAGGAACATACTTGTCACAGAATAATCATGACAGCAAAAGTTTCTATTTGGAAAAAATGTTTGGGAGTGTAAATATTATTAATGGTGTAGAAGGAGATGAGATGGAAATTTACAATGTTCCTCCTCTAGAGAGTGTTAATACTAATAGTACTATTACTTGTGAACATAGTGTAAAAATGGAGAATGCATGCAATGGAGAAGATGGTAATTACAATAGTAGTTATAACTTTGATGACATAAACAACATTGTTATTAACAACTGCAATGTTGTTAGTAAGAGAAGTGAAAATAGAGCTGATCATGATGAGGTGGAGAATTTATTTCATGGAGATTTATCTGTTGGAGATTGGGATTTGGAAGATTTGATGAAAGATGTTTCATCATTTCCATTTCTTGATTTTTCAAACTGA
Protein sequence

>Msa0548620

MRKPEIASGKNNSKLRKGLWSPEEDEKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEEHIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSNTSPNASDESSYDPNKDHNMGGFITSSTQDQQHIDNHFMPMFNTSSPSPPTMQNTVFNTIMSGSGCGFFNNSTTGTYLSQNNHDSKSFYLEKMFGSVNIINGVEGDEMEIYNVPPLESVNTNSTITCEHSVKMENACNGEDGNYNSSYNFDDINNIVINNCNVVSKRSENRADHDEVENLFHGDLSVGDWDLEDLMKDVSSFPFLDFSN*