Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900730 | KEH27200.1 | 98.273 | 521 | 9 | 0 | 1 | 521 | 1 | 521 | 0.0 | 1068 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900730 | A0A072UMW0 | 98.273 | 521 | 9 | 0 | 1 | 521 | 1 | 521 | 0.0 | 1068 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0615420 | Msa0900730 | 0.806218 | 9.153638e-50 | -8.615850e-47 |
| Msa0691050 | Msa0900730 | 0.812219 | 4.733308e-51 | -8.615850e-47 |
| Msa0698640 | Msa0900730 | 0.803255 | 3.804516e-49 | -8.615850e-47 |
| Msa0900730 | Msa0926340 | 0.868746 | 5.190682e-66 | -8.615850e-47 |
| Msa0900730 | Msa0974060 | 0.826642 | 2.425277e-54 | -8.615850e-47 |
| Msa0900730 | Msa1024740 | 0.831454 | 1.654353e-55 | -8.615850e-47 |
| Msa0900730 | Msa1108790 | 0.816377 | 5.706166e-52 | -8.615850e-47 |
| Msa0900730 | Msa1152510 | 0.816792 | 4.607695e-52 | -8.615850e-47 |
| Msa0900730 | Msa1399160 | 0.822913 | 1.836898e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900730 | MtrunA17_Chr6g0486901 | 92.543 | 523 | 11 | 2 | 27 | 521 | 3 | 525 | 0.0 | 997 |
| Msa0900730 | MtrunA17_Chr8g0389871 | 77.326 | 516 | 117 | 0 | 4 | 519 | 1 | 516 | 0.0 | 857 |
| Msa0900730 | MtrunA17_Chr8g0389861 | 58.723 | 470 | 131 | 7 | 55 | 495 | 1 | 436 | 0.0 | 545 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900730 | AT2G19880.2 | 74.038 | 520 | 131 | 2 | 1 | 519 | 1 | 517 | 0.0 | 810 |
| Msa0900730 | AT2G19880.1 | 73.796 | 519 | 133 | 1 | 1 | 519 | 1 | 516 | 0.0 | 808 |
Find 124 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCAACTGATCTTAATTT+TGG | 0.129373 | 6_1:-96942347 | Msa0900730:CDS |
| ATTTGCTTAGTCTTAGCTTT+TGG | 0.183862 | 6_1:-96944946 | Msa0900730:CDS |
| ACAGGTACTGGAATTATTTA+AGG | 0.195387 | 6_1:-96942249 | Msa0900730:intron |
| GTGAACACAATCTCCATAAT+TGG | 0.204953 | 6_1:-96944513 | Msa0900730:CDS |
| GATTTACCATCTGGAAGTTT+AGG | 0.240624 | 6_1:-96943246 | Msa0900730:CDS |
| TCAGAATTCTCTTCTCCTTT+TGG | 0.243862 | 6_1:-96945619 | Msa0900730:CDS |
| ATTTCTCTCAATCTATTAAT+TGG | 0.244531 | 6_1:-96940718 | Msa0900730:CDS |
| GGCACTACAGTTTCGCTATA+AGG | 0.260877 | 6_1:-96942092 | Msa0900730:CDS |
| TTTCTATTGTTAACTATAAC+TGG | 0.262552 | 6_1:-96941463 | Msa0900730:CDS |
| ATTTGTATTGCCATACATTA+TGG | 0.268751 | 6_1:-96942134 | Msa0900730:CDS |
| ATTTACCATCTGGAAGTTTA+GGG | 0.283503 | 6_1:-96943245 | Msa0900730:CDS |
| ATACCTGAGTCCTCCAATTA+TGG | 0.293207 | 6_1:+96944500 | None:intergenic |
| ACGCCATTCCGTGTATTTCT+TGG | 0.293850 | 6_1:+96940244 | Msa0900720:three_prime_UTR |
| AAGGAAACAAACATTTGTTT+TGG | 0.300867 | 6_1:-96942230 | Msa0900730:CDS |
| GGCATAATTACTGTTACTTT+TGG | 0.301670 | 6_1:+96944550 | None:intergenic |
| GTTCCACAGCCTTGTTCAAT+AGG | 0.305475 | 6_1:-96942889 | Msa0900730:intron |
| ATGCAGTTAACATCTCTATA+TGG | 0.320655 | 6_1:-96944392 | Msa0900730:intron |
| TGTTCACCAAACCCCTTTAG+AGG | 0.321880 | 6_1:+96944529 | None:intergenic |
| CCAGCCAAGTCTGTGAAAAC+TGG | 0.324887 | 6_1:+96940326 | Msa0900720:three_prime_UTR |
| GAAGGAATCAAGAGAATCTA+AGG | 0.335564 | 6_1:+96945657 | None:intergenic |
| TGAGAACGAATTGCAGATAT+AGG | 0.345163 | 6_1:+96940740 | Msa0900720:three_prime_UTR |
| TTGGGTTTCGAAGGCTCGTC+AGG | 0.346305 | 6_1:-96940136 | Msa0900730:three_prime_UTR |
| AAAGAGAGATAAGAAGAATA+AGG | 0.346928 | 6_1:-96944654 | Msa0900730:CDS |
| TTGTAGTTATTCAGATCTCT+TGG | 0.360716 | 6_1:+96940217 | Msa0900720:three_prime_UTR |
| CTTGAGGTCTGCCTTGGTCC+TGG | 0.367170 | 6_1:+96940112 | Msa0900720:three_prime_UTR |
| CAACAGATATTTATACAAAC+TGG | 0.383560 | 6_1:-96943279 | Msa0900730:intron |
| ACTGGAGCCATATCCTTGTT+TGG | 0.388189 | 6_1:+96940344 | Msa0900720:three_prime_UTR |
| GGGCTTCAGCTGCTTGTGTC+AGG | 0.391633 | 6_1:-96944921 | Msa0900730:intron |
| TACAAAGGCTTAAGTGAGTT+GGG | 0.394097 | 6_1:-96940154 | Msa0900730:three_prime_UTR |
| GCACTACAGTTTCGCTATAA+GGG | 0.398072 | 6_1:-96942091 | Msa0900730:CDS |
| ACAGTAATTATGCCTCTAAA+GGG | 0.403158 | 6_1:-96944541 | Msa0900730:CDS |
| TCTCAATCTATTAATTGGTC+TGG | 0.404186 | 6_1:-96940713 | Msa0900730:CDS |
| GACTCAACCAAACAAGGATA+TGG | 0.406315 | 6_1:-96940351 | Msa0900730:CDS |
| AACAGTAATTATGCCTCTAA+AGG | 0.410626 | 6_1:-96944542 | Msa0900730:CDS |
| TATCCTCTTGATTTACCATC+TGG | 0.416747 | 6_1:-96943255 | Msa0900730:CDS |
| CGATCAACCATGTGGGAGAT+AGG | 0.421434 | 6_1:+96940061 | Msa0900720:three_prime_UTR |
| TGTAGTTATTCAGATCTCTT+GGG | 0.431677 | 6_1:+96940218 | Msa0900720:three_prime_UTR |
| AAGATTACTATCAGAATTTG+AGG | 0.432221 | 6_1:-96944306 | Msa0900730:intron |
| GAGGAAATGACCTACACTTC+TGG | 0.432765 | 6_1:-96942058 | Msa0900730:CDS |
| GAGAACGAATTGCAGATATA+GGG | 0.440054 | 6_1:+96940741 | Msa0900720:three_prime_UTR |
| CCTTCTCTCAGGGTTATCAC+TGG | 0.443034 | 6_1:-96941591 | Msa0900730:intron |
| CCGTTCACTGTTATTTGTCG+TGG | 0.446755 | 6_1:-96942159 | Msa0900730:CDS |
| CGTTCACTGTTATTTGTCGT+GGG | 0.446873 | 6_1:-96942158 | Msa0900730:CDS |
| AGAAAAGGGTTTCCTTCAAA+AGG | 0.452780 | 6_1:-96940287 | Msa0900730:CDS |
| TTCAAAGAATAACAGAAAGA+AGG | 0.452911 | 6_1:-96945703 | Msa0900730:five_prime_UTR |
| ATTATGCCTCTAAAGGGGTT+TGG | 0.453265 | 6_1:-96944535 | Msa0900730:CDS |
| ATAGAAAGAGGAGGTTCCTC+TGG | 0.454463 | 6_1:+96941479 | None:intergenic |
| AAAGCTAATTTCTTCTCCTC+CGG | 0.455520 | 6_1:-96942390 | Msa0900730:CDS |
| TTCGAAGGCTCGTCAGGGCC+AGG | 0.456451 | 6_1:-96940130 | Msa0900730:three_prime_UTR |
| TGAACTATCGCCATAATGTA+TGG | 0.467601 | 6_1:+96942124 | None:intergenic |
| AGATCAGTTGCAAGCGGATG+AGG | 0.470134 | 6_1:+96942356 | None:intergenic |
| ATATTTGCTGTCTTTATCCA+TGG | 0.470720 | 6_1:+96943648 | None:intergenic |
| AGCCTACATCCTGGATCAAT+TGG | 0.471767 | 6_1:-96943601 | Msa0900730:CDS |
| AAGCTCAAGAAGAGTGCATA+TGG | 0.473573 | 6_1:+96941556 | None:intergenic |
| TGAACTTGAGCATTCCAATC+AGG | 0.475510 | 6_1:-96944581 | Msa0900730:CDS |
| ATGACTCTTGCAGCCATAGC+TGG | 0.488562 | 6_1:-96942665 | Msa0900730:intron |
| ATGCTCCTTGAGGTCTGCCT+TGG | 0.492567 | 6_1:+96940106 | Msa0900720:three_prime_UTR |
| CTTGATACAGCATGGTAAGC+AGG | 0.492748 | 6_1:+96944326 | None:intergenic |
| ATACAAAGGCTTAAGTGAGT+TGG | 0.494076 | 6_1:-96940155 | Msa0900730:three_prime_UTR |
| CTATAAGGGTTACTCGGTTG+AGG | 0.508033 | 6_1:-96942077 | Msa0900730:CDS |
| GAGGCTAGGGTAATTGTAGC+TGG | 0.508050 | 6_1:-96944180 | Msa0900730:CDS |
| TGGTGCACTCGCTCGTGAGA+TGG | 0.517702 | 6_1:-96943581 | Msa0900730:CDS |
| GCGAGTGCACCAATTGATCC+AGG | 0.527955 | 6_1:+96943592 | None:intergenic |
| TAGAAAGAGGAGGTTCCTCT+GGG | 0.529248 | 6_1:+96941480 | None:intergenic |
| TTGCATCTATGAATACCATA+TGG | 0.530535 | 6_1:-96943217 | Msa0900730:intron |
| GGATGAGGAAAGACAGCGAC+CGG | 0.534220 | 6_1:+96942371 | None:intergenic |
| TCAAAGAATAACAGAAAGAA+GGG | 0.535873 | 6_1:-96945702 | Msa0900730:five_prime_UTR |
| CAGGACCAAGGCAGACCTCA+AGG | 0.537760 | 6_1:-96940111 | Msa0900730:three_prime_UTR |
| GTAGTCTCAGAACTTCGAAA+TGG | 0.539131 | 6_1:-96942704 | Msa0900730:CDS |
| GGTATTCATTGCTATGTTGG+TGG | 0.540526 | 6_1:-96940777 | Msa0900730:CDS |
| GCAGGTATTCATTGCTATGT+TGG | 0.542529 | 6_1:-96940780 | Msa0900730:intron |
| TTAAGTGAGTTGGGTTTCGA+AGG | 0.543611 | 6_1:-96940145 | Msa0900730:three_prime_UTR |
| GCAGGGTTCTGTAGAGGCTA+GGG | 0.545200 | 6_1:-96944193 | Msa0900730:intron |
| GTCTCAGAACTTCGAAATGG+TGG | 0.551163 | 6_1:-96942701 | Msa0900730:CDS |
| TGCAGGGTTCTGTAGAGGCT+AGG | 0.552549 | 6_1:-96944194 | Msa0900730:intron |
| GAGAGATAAGAAGAATAAGG+AGG | 0.553368 | 6_1:-96944651 | Msa0900730:CDS |
| TGTTCAATAGGATTTGCCAC+TGG | 0.556712 | 6_1:-96942877 | Msa0900730:CDS |
| GGCAATTGAGCAGGTTGGAG+TGG | 0.560575 | 6_1:-96943674 | Msa0900730:intron |
| TCAATAGGATTTGCCACTGG+TGG | 0.565490 | 6_1:-96942874 | Msa0900730:CDS |
| CTTCCAGATGGTAAATCAAG+AGG | 0.568638 | 6_1:+96943252 | None:intergenic |
| ATATATGCAGGGTTCTGTAG+AGG | 0.569292 | 6_1:-96944199 | Msa0900730:intron |
| TTTCAATGTGGAACTTGACA+AGG | 0.569660 | 6_1:-96941532 | Msa0900730:CDS |
| TATCAATTACTCACCAGCTA+TGG | 0.571387 | 6_1:+96942652 | None:intergenic |
| AACACAATCTCCATAATTGG+AGG | 0.573745 | 6_1:-96944510 | Msa0900730:CDS |
| TTCTTGAGCTTCTTTCAATG+TGG | 0.576638 | 6_1:-96941544 | Msa0900730:CDS |
| GATGATGTGAGCCTACATCC+TGG | 0.578008 | 6_1:-96943610 | Msa0900730:CDS |
| GCTCGTCAGGGCCAGGACCA+AGG | 0.581447 | 6_1:-96940123 | Msa0900730:three_prime_UTR |
| GTTTCGCTATAAGGGTTACT+CGG | 0.581855 | 6_1:-96942083 | Msa0900730:CDS |
| ATAAGGAGGAGTATGCAGAA+TGG | 0.586499 | 6_1:-96944637 | Msa0900730:CDS |
| TGTCCAAGAAATACACGGAA+TGG | 0.590755 | 6_1:-96940247 | Msa0900730:CDS |
| TTATAGTTAACAATAGAAAG+AGG | 0.591156 | 6_1:+96941467 | None:intergenic |
| GGCGATAGTTCATGTTGCAG+CGG | 0.594221 | 6_1:-96942113 | Msa0900730:CDS |
| TCTCCATAATTGGAGGACTC+AGG | 0.594738 | 6_1:-96944503 | Msa0900730:intron |
| AGATAGGACTCAACCAAACA+AGG | 0.601132 | 6_1:-96940357 | Msa0900730:CDS |
| CACCAATTGATCCAGGATGT+AGG | 0.603231 | 6_1:+96943599 | None:intergenic |
| ATAGTGCGCGGTTCATCACA+CGG | 0.603482 | 6_1:+96942185 | None:intergenic |
| GTTCTCACCACCAGAAGTGT+AGG | 0.608279 | 6_1:+96942048 | None:intergenic |
| TGAGCTGAGAGAAAAGAGGA+AGG | 0.610119 | 6_1:+96945639 | None:intergenic |
| TTTGTGGGGAGGTTGCATGA+TGG | 0.615178 | 6_1:-96942839 | Msa0900730:intron |
| TGGGTTTCGAAGGCTCGTCA+GGG | 0.615860 | 6_1:-96940135 | Msa0900730:three_prime_UTR |
| ATTCTGAGCTGAGAGAAAAG+AGG | 0.616714 | 6_1:+96945635 | None:intergenic |
| CGTATATTGTATGCTCCTTG+AGG | 0.617384 | 6_1:+96940096 | Msa0900720:three_prime_UTR |
| TGAGGAAAGACAGCGACCGG+AGG | 0.619427 | 6_1:+96942374 | None:intergenic |
| CAGTAATTATGCCTCTAAAG+GGG | 0.620606 | 6_1:-96944540 | Msa0900730:CDS |
| ATAGTAATCTTGATACAGCA+TGG | 0.621568 | 6_1:+96944318 | None:intergenic |
| ACAACTAAAATAAATTCTAG+AGG | 0.625172 | 6_1:+96944365 | None:intergenic |
| GAATCAAGAGAATCTAAGGA+AGG | 0.625526 | 6_1:+96945661 | None:intergenic |
| CAGTTAACATCTCTATATGG+TGG | 0.629135 | 6_1:-96944389 | Msa0900730:CDS |
| GTTCACTGTTATTTGTCGTG+GGG | 0.632090 | 6_1:-96942157 | Msa0900730:CDS |
| CCACGACAAATAACAGTGAA+CGG | 0.632384 | 6_1:+96942159 | None:intergenic |
| TAACTCCCTAAACTTCCAGA+TGG | 0.632432 | 6_1:+96943240 | None:intergenic |
| AAATTAAGATCAGTTGCAAG+CGG | 0.632689 | 6_1:+96942350 | None:intergenic |
| GACTTTATGCAAGATAATTG+TGG | 0.643767 | 6_1:-96942728 | Msa0900730:CDS |
| GCAGGTTGGAGTGGAGACCA+TGG | 0.647333 | 6_1:-96943665 | Msa0900730:intron |
| TTGGACAATGAACTGAGGAG+TGG | 0.648576 | 6_1:+96940263 | Msa0900720:three_prime_UTR |
| GTGGCAAATCCTATTGAACA+AGG | 0.668813 | 6_1:+96942880 | None:intergenic |
| TTGCAACATGTTGTCCCCAG+AGG | 0.669715 | 6_1:-96941495 | Msa0900730:CDS |
| TAGTTAACAATAGAAAGAGG+AGG | 0.671598 | 6_1:+96941470 | None:intergenic |
| TGAGATGGAAAGAAATCCTG+AGG | 0.674371 | 6_1:-96943566 | Msa0900730:intron |
| TTCATTGTCCAAGAAATACA+CGG | 0.678174 | 6_1:-96940252 | Msa0900730:CDS |
| GAAATGACCTACACTTCTGG+TGG | 0.693001 | 6_1:-96942055 | Msa0900730:intron |
| ATTTCTTGGACAATGAACTG+AGG | 0.733974 | 6_1:+96940258 | Msa0900720:three_prime_UTR |
| AGTGAACGGTGAATAGTGCG+CGG | 0.735851 | 6_1:+96942173 | None:intergenic |
| AGAAAGAGGAGGTTCCTCTG+GGG | 0.759136 | 6_1:+96941481 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATATATGCAATAAAA+AGG | + | chr6_1:96941841-96941860 | None:intergenic | 10.0% |
| !!! | TATTATTTTCAAACAATTTA+AGG | - | chr6_1:96941862-96941881 | Msa0900730:intron | 10.0% |
| !!! | TTTTTTCGTATTTATTATAT+AGG | - | chr6_1:96943494-96943513 | Msa0900730:intron | 10.0% |
| !!! | AAAATAAGATAAAATTGTTT+TGG | - | chr6_1:96944839-96944858 | Msa0900730:intron | 10.0% |
| !!! | AGTTTGATTTAATAATATCA+AGG | - | chr6_1:96940682-96940701 | Msa0900730:CDS | 15.0% |
| !! | ATGTACTTTAATTGAAAATT+GGG | + | chr6_1:96940770-96940789 | Msa0900720:three_prime_UTR | 15.0% |
| !! | TATGTACTTTAATTGAAAAT+TGG | + | chr6_1:96940771-96940790 | Msa0900720:three_prime_UTR | 15.0% |
| !! | ATTAAAGTACATATAAAACA+AGG | - | chr6_1:96940778-96940797 | Msa0900730:CDS | 15.0% |
| !! | ATCTAATGTCTTAAAATATT+AGG | - | chr6_1:96940881-96940900 | Msa0900730:intron | 15.0% |
| !! | TACAATATTTAATGTTATAG+TGG | + | chr6_1:96941486-96941505 | None:intergenic | 15.0% |
| !!! | TAATAATCTTTTATATATGC+AGG | - | chr6_1:96941739-96941758 | Msa0900730:intron | 15.0% |
| !!! | AATAATCTTTTATATATGCA+GGG | - | chr6_1:96941740-96941759 | Msa0900730:intron | 15.0% |
| !! | ATTATATACCATTTGAAAAA+TGG | - | chr6_1:96945261-96945280 | Msa0900730:intron | 15.0% |
| !! | ACTTATAACAATAAACTATT+TGG | - | chr6_1:96945455-96945474 | Msa0900730:intron | 15.0% |
| !! | ATTTGAATGAAAAATCCAAA+AGG | + | chr6_1:96940349-96940368 | Msa0900720:three_prime_UTR | 20.0% |
| !!! | AATAGTTATTTTACGATCAT+TGG | + | chr6_1:96940722-96940741 | Msa0900720:three_prime_UTR | 20.0% |
| !! | TGTACTTTAATTGAAAATTG+GGG | + | chr6_1:96940769-96940788 | Msa0900720:three_prime_UTR | 20.0% |
| !! | AAAAGGATTCATATATCTAA+TGG | - | chr6_1:96940824-96940843 | Msa0900730:intron | 20.0% |
| !! | TTAACATGAATTTCAGATTA+CGG | + | chr6_1:96940967-96940986 | None:intergenic | 20.0% |
| !! | TTTAAGAAAACAAAAGTGAT+TGG | - | chr6_1:96941118-96941137 | Msa0900730:intron | 20.0% |
| !!! | AAAATGATGCAAATTTGTTA+TGG | + | chr6_1:96941264-96941283 | None:intergenic | 20.0% |
| !! | ACAACTAAAATAAATTCTAG+AGG | + | chr6_1:96941588-96941607 | None:intergenic | 20.0% |
| !! | TCAAAAAATTCACAATCAAT+TGG | - | chr6_1:96941811-96941830 | Msa0900730:intron | 20.0% |
| !!! | TCTACACATGTTTTTAAATT+CGG | + | chr6_1:96942580-96942599 | None:intergenic | 20.0% |
| !!! | GACGTTATTTGAAATATTTA+TGG | - | chr6_1:96942598-96942617 | Msa0900730:intron | 20.0% |
| !! | ATACATGTATGAATTTAGTA+TGG | + | chr6_1:96942840-96942859 | None:intergenic | 20.0% |
| !! | ACTAAATTCATACATGTATT+TGG | - | chr6_1:96942841-96942860 | Msa0900730:CDS | 20.0% |
| !! | TCTTGAATGTCAATTTATTA+TGG | - | chr6_1:96942876-96942895 | Msa0900730:CDS | 20.0% |
| !! | AAACCAAAGAAAAAGAAAAA+AGG | + | chr6_1:96943150-96943169 | None:intergenic | 20.0% |
| !! | TTATAGTTAACAATAGAAAG+AGG | + | chr6_1:96944486-96944505 | None:intergenic | 20.0% |
| !! | TTTCTATTGTTAACTATAAC+TGG | - | chr6_1:96944487-96944506 | Msa0900730:intron | 20.0% |
| !!! | GGATAAAAGACTTATTATTT+TGG | + | chr6_1:96944544-96944563 | None:intergenic | 20.0% |
| !!! | GAAAAACCAAAATTTTGAAT+TGG | - | chr6_1:96944622-96944641 | Msa0900730:CDS | 20.0% |
| !! | AATGTGTATTTCTCATATAT+TGG | + | chr6_1:96945101-96945120 | None:intergenic | 20.0% |
| !! | ATTTCTCTCAATCTATTAAT+TGG | - | chr6_1:96945232-96945251 | Msa0900730:intron | 20.0% |
| !!! | AGATTTTTCCATTTTTCAAA+TGG | + | chr6_1:96945272-96945291 | None:intergenic | 20.0% |
| !! | TCTGAATAACTACAAAAAAA+TGG | - | chr6_1:96945741-96945760 | Msa0900730:five_prime_UTR | 20.0% |
| ! | TCTTACATCACAAAAATACA+AGG | + | chr6_1:96940211-96940230 | Msa0900720:three_prime_UTR | 25.0% |
| ! | TTCAAAGAATAACAGAAAGA+AGG | - | chr6_1:96940247-96940266 | Msa0900730:CDS | 25.0% |
| ! | TCAAAGAATAACAGAAAGAA+GGG | - | chr6_1:96940248-96940267 | Msa0900730:CDS | 25.0% |
| !! | TGGATTTTTCATTCAAATTC+AGG | - | chr6_1:96940351-96940370 | Msa0900730:CDS | 25.0% |
| !! | TTTTTCATTCAAATTCAGGT+AGG | - | chr6_1:96940355-96940374 | Msa0900730:CDS | 25.0% |
| ! | CATATGGAATTGCAAAAAAA+GGG | + | chr6_1:96940465-96940484 | Msa0900720:intron | 25.0% |
| ! | ACATATGGAATTGCAAAAAA+AGG | + | chr6_1:96940466-96940485 | Msa0900720:intron | 25.0% |
| !! | AAAGGTTTCAGTTTTACATA+TGG | + | chr6_1:96940481-96940500 | Msa0900720:intron | 25.0% |
| ! | ACATTGTCTGCATATATAAA+AGG | + | chr6_1:96940499-96940518 | Msa0900720:intron | 25.0% |
| !!! | TAAAACAAGGTCATTTTTGT+TGG | - | chr6_1:96940791-96940810 | Msa0900730:intron | 25.0% |
| ! | TTGTTGGTATATCAAGTAAA+AGG | - | chr6_1:96940807-96940826 | Msa0900730:intron | 25.0% |
| ! | TTGAACAATATACAAGTGAA+AGG | - | chr6_1:96940850-96940869 | Msa0900730:intron | 25.0% |
| ! | CACACAAATGAAATTACATA+TGG | + | chr6_1:96940915-96940934 | None:intergenic | 25.0% |
| ! | TATGTAATTTCATTTGTGTG+TGG | - | chr6_1:96940915-96940934 | Msa0900730:intron | 25.0% |
| ! | AAATTCATGTTAAATGTGCA+GGG | - | chr6_1:96940974-96940993 | Msa0900730:intron | 25.0% |
| !!! | TTGCATCATTTTAATGTTAC+AGG | - | chr6_1:96941272-96941291 | Msa0900730:intron | 25.0% |
| ! | AAAGAGAGATAAGAAGAATA+AGG | - | chr6_1:96941296-96941315 | Msa0900730:intron | 25.0% |
| ! | AAGATTACTATCAGAATTTG+AGG | - | chr6_1:96941644-96941663 | Msa0900730:intron | 25.0% |
| ! | ACTGAAATAGAGTGATTAAA+GGG | + | chr6_1:96941701-96941720 | None:intergenic | 25.0% |
| ! | AACTGAAATAGAGTGATTAA+AGG | + | chr6_1:96941702-96941721 | None:intergenic | 25.0% |
| !! | TAATCACTCTATTTCAGTTT+TGG | - | chr6_1:96941703-96941722 | Msa0900730:intron | 25.0% |
| ! | ATATAAGCAAGAAAAAAACC+AGG | + | chr6_1:96941905-96941924 | None:intergenic | 25.0% |
| ! | TATCATAGCTGTATCATTTA+TGG | - | chr6_1:96941965-96941984 | Msa0900730:intron | 25.0% |
| ! | ATTTGAATCTAGGTTCAATA+TGG | - | chr6_1:96942102-96942121 | Msa0900730:CDS | 25.0% |
| ! | TATTGTAAGACTAAGATAGT+TGG | + | chr6_1:96942251-96942270 | None:intergenic | 25.0% |
| !!! | TCTTAGTCTTACAATAGTAT+TGG | - | chr6_1:96942255-96942274 | Msa0900730:intron | 25.0% |
| !! | CAGCAAATATGTATTGTTTT+TGG | - | chr6_1:96942315-96942334 | Msa0900730:intron | 25.0% |
| ! | GAGTGTAATCGAATAATTAT+AGG | + | chr6_1:96942633-96942652 | None:intergenic | 25.0% |
| ! | CAACAGATATTTATACAAAC+TGG | - | chr6_1:96942671-96942690 | Msa0900730:CDS | 25.0% |
| !!! | CTACCTTTTTTCTTTTTCTT+TGG | - | chr6_1:96943144-96943163 | Msa0900730:intron | 25.0% |
| ! | TTCTGTTTATTATCCTTTAC+AGG | - | chr6_1:96943528-96943547 | Msa0900730:intron | 25.0% |
| ! | TTAATTAGTTCAACATGTAC+AGG | - | chr6_1:96943683-96943702 | Msa0900730:intron | 25.0% |
| !! | AAGGAAACAAACATTTGTTT+TGG | - | chr6_1:96943720-96943739 | Msa0900730:intron | 25.0% |
| ! | ATTTGTATTGCCATACATTA+TGG | - | chr6_1:96943816-96943835 | Msa0900730:intron | 25.0% |
| !!! | GAACACTACTTTTTCTTTTT+AGG | - | chr6_1:96943921-96943940 | Msa0900730:intron | 25.0% |
| !!! | ACTACTTTTTCTTTTTAGGT+AGG | - | chr6_1:96943925-96943944 | Msa0900730:intron | 25.0% |
| ! | CAATGTGTGTTTAAATACTA+CGG | + | chr6_1:96944112-96944131 | None:intergenic | 25.0% |
| ! | TTCAAATTATTACACAAGCT+TGG | + | chr6_1:96944565-96944584 | None:intergenic | 25.0% |
| !! | CTTCTTCCAATTCAAAATTT+TGG | + | chr6_1:96944631-96944650 | None:intergenic | 25.0% |
| ! | ATAAGTAGTTTATCCAAACA+AGG | + | chr6_1:96944750-96944769 | None:intergenic | 25.0% |
| ! | CTTTCTCTATTTCATATTGA+GGG | + | chr6_1:96945002-96945021 | None:intergenic | 25.0% |
| ! | ACTTTCTCTATTTCATATTG+AGG | + | chr6_1:96945003-96945022 | None:intergenic | 25.0% |
| ! | GAATTTGAGTGAATATATGT+TGG | - | chr6_1:96945030-96945049 | Msa0900730:intron | 25.0% |
| ! | ATGAGAAATACACATTTACT+AGG | - | chr6_1:96945105-96945124 | Msa0900730:intron | 25.0% |
| !!! | TCTTTAATTTTTTCTTGAGC+AGG | - | chr6_1:96945152-96945171 | Msa0900730:intron | 25.0% |
| ! | CTTATCTGATAAGTACTTAT+TGG | + | chr6_1:96945366-96945385 | None:intergenic | 25.0% |
| ! | AAAAACTCTAGATGAGAAAA+AGG | + | chr6_1:96945552-96945571 | None:intergenic | 25.0% |
| !! | TGTATTTTCTTCAGATAGAT+AGG | - | chr6_1:96945577-96945596 | Msa0900730:intron | 25.0% |
| !! | AAACTTTTACATGGAAGAAA+AGG | - | chr6_1:96945648-96945667 | Msa0900730:CDS | 25.0% |
| !! | AACTTTTACATGGAAGAAAA+GGG | - | chr6_1:96945649-96945668 | Msa0900730:CDS | 25.0% |
| !!! | ATATCGTTTTTGGAATACAA+AGG | - | chr6_1:96945781-96945800 | Msa0900730:five_prime_UTR | 25.0% |
| GAAATTCATGTTAAATGTGC+AGG | - | chr6_1:96940973-96940992 | Msa0900730:intron | 30.0% | |
| !!! | ATTTGCTTAGTCTTAGCTTT+TGG | - | chr6_1:96941004-96941023 | Msa0900730:intron | 30.0% |
| !!! | TTTGCTTAGTCTTAGCTTTT+GGG | - | chr6_1:96941005-96941024 | Msa0900730:intron | 30.0% |
| !!! | GGCATAATTACTGTTACTTT+TGG | + | chr6_1:96941403-96941422 | None:intergenic | 30.0% |
| AACAGTAATTATGCCTCTAA+AGG | - | chr6_1:96941408-96941427 | Msa0900730:intron | 30.0% | |
| ACAGTAATTATGCCTCTAAA+GGG | - | chr6_1:96941409-96941428 | Msa0900730:intron | 30.0% | |
| ATGCAGTTAACATCTCTATA+TGG | - | chr6_1:96941558-96941577 | Msa0900730:CDS | 30.0% | |
| ATAGTAATCTTGATACAGCA+TGG | + | chr6_1:96941635-96941654 | None:intergenic | 30.0% | |
| GTCATACTATATATGAAACC+TGG | - | chr6_1:96941884-96941903 | Msa0900730:intron | 30.0% | |
| TCAACAGGAATGAAAATACT+TGG | + | chr6_1:96942196-96942215 | None:intergenic | 30.0% | |
| TGACAAAGCAATTAATCAAC+AGG | + | chr6_1:96942211-96942230 | None:intergenic | 30.0% | |
| !! | ATATTTGCTGTCTTTATCCA+TGG | + | chr6_1:96942305-96942324 | None:intergenic | 30.0% |
| TGCCTTAAAAATTCGAAATC+CGG | - | chr6_1:96942409-96942428 | Msa0900730:intron | 30.0% | |
| ! | ATCCGGATTTCGAATTTTTA+AGG | + | chr6_1:96942414-96942433 | None:intergenic | 30.0% |
| TAAAAATTCGAAATCCGGAT+TGG | - | chr6_1:96942414-96942433 | Msa0900730:intron | 30.0% | |
| ! | TTTTTCTTTGATAAGCGAGT+TGG | + | chr6_1:96942501-96942520 | None:intergenic | 30.0% |
| ATTTACCATCTGGAAGTTTA+GGG | - | chr6_1:96942705-96942724 | Msa0900730:CDS | 30.0% | |
| TTGCATCTATGAATACCATA+TGG | - | chr6_1:96942733-96942752 | Msa0900730:CDS | 30.0% | |
| TTAGAGAGACATAAATCTAG+AGG | + | chr6_1:96942769-96942788 | None:intergenic | 30.0% | |
| TTATGTCTCTCTAATGATCA+TGG | - | chr6_1:96942775-96942794 | Msa0900730:intron | 30.0% | |
| TTTAGTATGGAATCGAGATA+TGG | + | chr6_1:96942827-96942846 | None:intergenic | 30.0% | |
| TCATAAGACACTGTCAATAA+TGG | + | chr6_1:96942908-96942927 | None:intergenic | 30.0% | |
| ! | TTTGATAACCATGATCTTGA+TGG | - | chr6_1:96942979-96942998 | Msa0900730:intron | 30.0% |
| ! | TGGAAAAACCTTCTTTTTGT+GGG | - | chr6_1:96943096-96943115 | Msa0900730:intron | 30.0% |
| GACTTTATGCAAGATAATTG+TGG | - | chr6_1:96943222-96943241 | Msa0900730:CDS | 30.0% | |
| AAATTAAGATCAGTTGCAAG+CGG | + | chr6_1:96943603-96943622 | None:intergenic | 30.0% | |
| ! | CTTGCAACTGATCTTAATTT+TGG | - | chr6_1:96943603-96943622 | Msa0900730:CDS | 30.0% |
| ! | CAACTGATCTTAATTTTGGA+AGG | - | chr6_1:96943607-96943626 | Msa0900730:CDS | 30.0% |
| TTCAGTTTACAGATGAATGA+TGG | + | chr6_1:96943643-96943662 | None:intergenic | 30.0% | |
| !! | ACAGGTACTGGAATTATTTA+AGG | - | chr6_1:96943701-96943720 | Msa0900730:intron | 30.0% |
| TGATTCCTAATGTGAACAAT+TGG | - | chr6_1:96943959-96943978 | Msa0900730:intron | 30.0% | |
| !! | CAAAAAAGAAAAAGCGTTTG+CGG | - | chr6_1:96944045-96944064 | Msa0900730:intron | 30.0% |
| CATAGTAGTCATTCTGTAAA+TGG | - | chr6_1:96944166-96944185 | Msa0900730:CDS | 30.0% | |
| ! | GTATTTGCTTTCTTTTGAAC+CGG | - | chr6_1:96944253-96944272 | Msa0900730:intron | 30.0% |
| ! | TATTTGCTTTCTTTTGAACC+GGG | - | chr6_1:96944254-96944273 | Msa0900730:intron | 30.0% |
| TAGTTAACAATAGAAAGAGG+AGG | + | chr6_1:96944483-96944502 | None:intergenic | 30.0% | |
| TTTCATATTGAGGGTCTATT+TGG | + | chr6_1:96944993-96945012 | None:intergenic | 30.0% | |
| AGAAATACACATTTACTAGG+TGG | - | chr6_1:96945108-96945127 | Msa0900730:intron | 30.0% | |
| TCTCAATCTATTAATTGGTC+TGG | - | chr6_1:96945237-96945256 | Msa0900730:intron | 30.0% | |
| GAAAAATGGAAAAATCTGCA+AGG | - | chr6_1:96945275-96945294 | Msa0900730:intron | 30.0% | |
| TACAATCAAAGAGAGAATGT+AGG | - | chr6_1:96945408-96945427 | Msa0900730:intron | 30.0% | |
| TTCATTGTCCAAGAAATACA+CGG | - | chr6_1:96945698-96945717 | Msa0900730:five_prime_UTR | 30.0% | |
| TGTAGTTATTCAGATCTCTT+GGG | + | chr6_1:96945735-96945754 | None:intergenic | 30.0% | |
| TTGTAGTTATTCAGATCTCT+TGG | + | chr6_1:96945736-96945755 | None:intergenic | 30.0% | |
| ! | TAGCGAAACAATATCGTTTT+TGG | - | chr6_1:96945771-96945790 | Msa0900730:five_prime_UTR | 30.0% |
| GAATCAAGAGAATCTAAGGA+AGG | + | chr6_1:96940292-96940311 | Msa0900720:three_prime_UTR | 35.0% | |
| GAAGGAATCAAGAGAATCTA+AGG | + | chr6_1:96940296-96940315 | Msa0900720:three_prime_UTR | 35.0% | |
| ! | TCAGAATTCTCTTCTCCTTT+TGG | - | chr6_1:96940331-96940350 | Msa0900730:CDS | 35.0% |
| ! | ACATGTGTCATTGTCAAACA+CGG | - | chr6_1:96941149-96941168 | Msa0900730:intron | 35.0% |
| GAGAGATAAGAAGAATAAGG+AGG | - | chr6_1:96941299-96941318 | Msa0900730:intron | 35.0% | |
| ! | TTTTGGCAAATTGACCTGAT+TGG | + | chr6_1:96941386-96941405 | None:intergenic | 35.0% |
| ! | CAGTAATTATGCCTCTAAAG+GGG | - | chr6_1:96941410-96941429 | Msa0900730:intron | 35.0% |
| GTGAACACAATCTCCATAAT+TGG | - | chr6_1:96941437-96941456 | Msa0900730:intron | 35.0% | |
| AACACAATCTCCATAATTGG+AGG | - | chr6_1:96941440-96941459 | Msa0900730:intron | 35.0% | |
| CAGTTAACATCTCTATATGG+TGG | - | chr6_1:96941561-96941580 | Msa0900730:CDS | 35.0% | |
| !! | AATAGTATTGGCAATTGAGC+AGG | - | chr6_1:96942267-96942286 | Msa0900730:intron | 35.0% |
| !!! | GAATTTTTAAGGCATACCTC+AGG | + | chr6_1:96942403-96942422 | None:intergenic | 35.0% |
| AAATTCGGATTATCTGCAGT+CGG | + | chr6_1:96942565-96942584 | None:intergenic | 35.0% | |
| TATCCTCTTGATTTACCATC+TGG | - | chr6_1:96942695-96942714 | Msa0900730:CDS | 35.0% | |
| GATTTACCATCTGGAAGTTT+AGG | - | chr6_1:96942704-96942723 | Msa0900730:CDS | 35.0% | |
| AGAGACATAAATCTAGAGGT+AGG | + | chr6_1:96942765-96942784 | None:intergenic | 35.0% | |
| TATGGAATCGAGATATGGAT+CGG | + | chr6_1:96942822-96942841 | None:intergenic | 35.0% | |
| TCGAGATTGAAATCGTGAAT+TGG | + | chr6_1:96942959-96942978 | None:intergenic | 35.0% | |
| TATAGTAGCCATCAAGATCA+TGG | + | chr6_1:96942990-96943009 | None:intergenic | 35.0% | |
| ! | GTGGAAAAACCTTCTTTTTG+TGG | - | chr6_1:96943095-96943114 | Msa0900730:intron | 35.0% |
| ! | GGAAAAACCTTCTTTTTGTG+GGG | - | chr6_1:96943097-96943116 | Msa0900730:intron | 35.0% |
| TATCAATTACTCACCAGCTA+TGG | + | chr6_1:96943301-96943320 | None:intergenic | 35.0% | |
| ! | CTTTTTATGAGCTCCTGTAA+AGG | + | chr6_1:96943544-96943563 | None:intergenic | 35.0% |
| AAAGCTAATTTCTTCTCCTC+CGG | - | chr6_1:96943560-96943579 | Msa0900730:intron | 35.0% | |
| TGAACTATCGCCATAATGTA+TGG | + | chr6_1:96943829-96943848 | None:intergenic | 35.0% | |
| GAAGCATAAGAGACTAACAA+TGG | + | chr6_1:96944017-96944036 | None:intergenic | 35.0% | |
| CTATCAGATACCTAAGATTC+AGG | - | chr6_1:96944285-96944304 | Msa0900730:intron | 35.0% | |
| GCATGTTATTCCTGAATCTT+AGG | + | chr6_1:96944298-96944317 | None:intergenic | 35.0% | |
| TGTAAAACCTAGGATAGAGT+AGG | + | chr6_1:96944334-96944353 | None:intergenic | 35.0% | |
| GAAGGAAAACTGTAAAACCT+AGG | + | chr6_1:96944344-96944363 | None:intergenic | 35.0% | |
| ! | TTTACAGTTTTCCTTCTCTC+AGG | - | chr6_1:96944348-96944367 | Msa0900730:CDS | 35.0% |
| ! | TTACAGTTTTCCTTCTCTCA+GGG | - | chr6_1:96944349-96944368 | Msa0900730:CDS | 35.0% |
| TTCTTGAGCTTCTTTCAATG+TGG | - | chr6_1:96944406-96944425 | Msa0900730:intron | 35.0% | |
| TTTCAATGTGGAACTTGACA+AGG | - | chr6_1:96944418-96944437 | Msa0900730:intron | 35.0% | |
| AGAAACTGAAGCATGATACA+TGG | - | chr6_1:96944672-96944691 | Msa0900730:intron | 35.0% | |
| TAGTTTATCCAAACAAGGCA+TGG | + | chr6_1:96944745-96944764 | None:intergenic | 35.0% | |
| TTTGCAGCTTATAGCATAAG+CGG | - | chr6_1:96944769-96944788 | Msa0900730:intron | 35.0% | |
| GAGAACGAATTGCAGATATA+GGG | + | chr6_1:96945212-96945231 | None:intergenic | 35.0% | |
| TGAGAACGAATTGCAGATAT+AGG | + | chr6_1:96945213-96945232 | None:intergenic | 35.0% | |
| GAAAAATCTGCAAGGTAAGT+TGG | - | chr6_1:96945283-96945302 | Msa0900730:intron | 35.0% | |
| ! | TTGGCTGGAAAACTTTTACA+TGG | - | chr6_1:96945639-96945658 | Msa0900730:CDS | 35.0% |
| AGAAAAGGGTTTCCTTCAAA+AGG | - | chr6_1:96945663-96945682 | Msa0900730:CDS | 35.0% | |
| ATTTCTTGGACAATGAACTG+AGG | + | chr6_1:96945695-96945714 | None:intergenic | 35.0% | |
| ATACAAAGGCTTAAGTGAGT+TGG | - | chr6_1:96945795-96945814 | Msa0900730:five_prime_UTR | 35.0% | |
| TACAAAGGCTTAAGTGAGTT+GGG | - | chr6_1:96945796-96945815 | Msa0900730:five_prime_UTR | 35.0% | |
| ATTCTGAGCTGAGAGAAAAG+AGG | + | chr6_1:96940318-96940337 | Msa0900720:three_prime_UTR | 40.0% | |
| GAGAGAGAGTAATGCAGAAA+TGG | + | chr6_1:96940385-96940404 | Msa0900720:intron | 40.0% | |
| TAAACCTAGACGCGTTTCAA+TGG | - | chr6_1:96940655-96940674 | Msa0900730:intron | 40.0% | |
| !!! | CTTAGTCTTAGCTTTTGGGT+GGG | - | chr6_1:96941009-96941028 | Msa0900730:intron | 40.0% |
| GTGTTTGACAATGACACATG+TGG | + | chr6_1:96941150-96941169 | None:intergenic | 40.0% | |
| ! | ATAAGGAGGAGTATGCAGAA+TGG | - | chr6_1:96941313-96941332 | Msa0900730:intron | 40.0% |
| TGAACTTGAGCATTCCAATC+AGG | - | chr6_1:96941369-96941388 | Msa0900730:intron | 40.0% | |
| ! | ATTATGCCTCTAAAGGGGTT+TGG | - | chr6_1:96941415-96941434 | Msa0900730:intron | 40.0% |
| ATACCTGAGTCCTCCAATTA+TGG | + | chr6_1:96941453-96941472 | None:intergenic | 40.0% | |
| TAATTGGAGGACTCAGGTAT+AGG | - | chr6_1:96941453-96941472 | Msa0900730:intron | 40.0% | |
| ATATATGCAGGGTTCTGTAG+AGG | - | chr6_1:96941751-96941770 | Msa0900730:intron | 40.0% | |
| CCTAGATTCAAATCGCGAAT+CGG | + | chr6_1:96942095-96942114 | None:intergenic | 40.0% | |
| TGAGATGGAAAGAAATCCTG+AGG | - | chr6_1:96942384-96942403 | Msa0900730:CDS | 40.0% | |
| ! | CTGTGTGGAATTATTGACTG+CGG | + | chr6_1:96942440-96942459 | None:intergenic | 40.0% |
| CTTCCAGATGGTAAATCAAG+AGG | + | chr6_1:96942701-96942720 | None:intergenic | 40.0% | |
| TAACTCCCTAAACTTCCAGA+TGG | + | chr6_1:96942713-96942732 | None:intergenic | 40.0% | |
| AATCCTATTGAACAAGGCTG+TGG | + | chr6_1:96943067-96943086 | None:intergenic | 40.0% | |
| GTGGCAAATCCTATTGAACA+AGG | + | chr6_1:96943073-96943092 | None:intergenic | 40.0% | |
| TGTTCAATAGGATTTGCCAC+TGG | - | chr6_1:96943073-96943092 | Msa0900730:intron | 40.0% | |
| ! | AAAGAAGGTTTTTCCACCAG+TGG | + | chr6_1:96943092-96943111 | None:intergenic | 40.0% |
| ! | AAAACCTTCTTTTTGTGGGG+AGG | - | chr6_1:96943100-96943119 | Msa0900730:intron | 40.0% |
| GTAGTCTCAGAACTTCGAAA+TGG | - | chr6_1:96943246-96943265 | Msa0900730:CDS | 40.0% | |
| ACATATTTGATCGCGAAGCT+TGG | + | chr6_1:96943458-96943477 | None:intergenic | 40.0% | |
| AGTTCAACATGTACAGGTAC+TGG | - | chr6_1:96943689-96943708 | Msa0900730:intron | 40.0% | |
| CCACGACAAATAACAGTGAA+CGG | + | chr6_1:96943794-96943813 | None:intergenic | 40.0% | |
| ! | CGTTCACTGTTATTTGTCGT+GGG | - | chr6_1:96943792-96943811 | Msa0900730:intron | 40.0% |
| ! | GTTCACTGTTATTTGTCGTG+GGG | - | chr6_1:96943793-96943812 | Msa0900730:intron | 40.0% |
| GCACTACAGTTTCGCTATAA+GGG | - | chr6_1:96943859-96943878 | Msa0900730:intron | 40.0% | |
| GTTTCGCTATAAGGGTTACT+CGG | - | chr6_1:96943867-96943886 | Msa0900730:intron | 40.0% | |
| CCTTGCCAATTGTTCACATT+AGG | + | chr6_1:96943967-96943986 | None:intergenic | 40.0% | |
| CCTAATGTGAACAATTGGCA+AGG | - | chr6_1:96943964-96943983 | Msa0900730:intron | 40.0% | |
| ! | CAAGGTTCTGATTCTGAATG+AGG | - | chr6_1:96943982-96944001 | Msa0900730:intron | 40.0% |
| ! | AAAGCGTTTGCGGATATTGT+TGG | - | chr6_1:96944055-96944074 | Msa0900730:intron | 40.0% |
| AAGCGTTTGCGGATATTGTT+GGG | - | chr6_1:96944056-96944075 | Msa0900730:intron | 40.0% | |
| TTTGCGGATATTGTTGGGTA+CGG | - | chr6_1:96944061-96944080 | Msa0900730:intron | 40.0% | |
| GATATTGTTGGGTACGGTTT+AGG | - | chr6_1:96944067-96944086 | Msa0900730:intron | 40.0% | |
| AATGGAGACGTAGACACAAT+TGG | - | chr6_1:96944184-96944203 | Msa0900730:CDS | 40.0% | |
| TATCTGATAGCACAACATCC+CGG | + | chr6_1:96944275-96944294 | None:intergenic | 40.0% | |
| CTTGTTACCTACTCTATCCT+AGG | - | chr6_1:96944324-96944343 | Msa0900730:CDS | 40.0% | |
| ! | AAGCTCAAGAAGAGTGCATA+TGG | + | chr6_1:96944397-96944416 | None:intergenic | 40.0% |
| CATGATACATGGACACAACA+AGG | - | chr6_1:96944683-96944702 | Msa0900730:intron | 40.0% | |
| GCAGGTATTCATTGCTATGT+TGG | - | chr6_1:96945170-96945189 | Msa0900730:intron | 40.0% | |
| GGTATTCATTGCTATGTTGG+TGG | - | chr6_1:96945173-96945192 | Msa0900730:intron | 40.0% | |
| AGATAGGACTCAACCAAACA+AGG | - | chr6_1:96945593-96945612 | Msa0900730:intron | 40.0% | |
| GACTCAACCAAACAAGGATA+TGG | - | chr6_1:96945599-96945618 | Msa0900730:intron | 40.0% | |
| TGTCCAAGAAATACACGGAA+TGG | - | chr6_1:96945703-96945722 | Msa0900730:five_prime_UTR | 40.0% | |
| ! | TTAAGTGAGTTGGGTTTCGA+AGG | - | chr6_1:96945805-96945824 | Msa0900730:five_prime_UTR | 40.0% |
| CGTATATTGTATGCTCCTTG+AGG | + | chr6_1:96945857-96945876 | None:intergenic | 40.0% | |
| TGAGCTGAGAGAAAAGAGGA+AGG | + | chr6_1:96940314-96940333 | Msa0900720:three_prime_UTR | 45.0% | |
| CTTACCATTGAAACGCGTCT+AGG | + | chr6_1:96940662-96940681 | Msa0900720:intron | 45.0% | |
| !!! | GCTTAGTCTTAGCTTTTGGG+TGG | - | chr6_1:96941008-96941027 | Msa0900730:intron | 45.0% |
| TCAGACATTCCCTAAATCCG+AGG | - | chr6_1:96941179-96941198 | Msa0900730:intron | 45.0% | |
| AGCACAACACCTCGGATTTA+GGG | + | chr6_1:96941191-96941210 | None:intergenic | 45.0% | |
| TAGCACAACACCTCGGATTT+AGG | + | chr6_1:96941192-96941211 | None:intergenic | 45.0% | |
| TGTTCACCAAACCCCTTTAG+AGG | + | chr6_1:96941424-96941443 | None:intergenic | 45.0% | |
| TCTCCATAATTGGAGGACTC+AGG | - | chr6_1:96941447-96941466 | Msa0900730:intron | 45.0% | |
| CTTGATACAGCATGGTAAGC+AGG | + | chr6_1:96941627-96941646 | None:intergenic | 45.0% | |
| ! | CCGATTCGCGATTTGAATCT+AGG | - | chr6_1:96942092-96942111 | Msa0900730:CDS | 45.0% |
| ! | GTATTGGCAATTGAGCAGGT+TGG | - | chr6_1:96942271-96942290 | Msa0900730:intron | 45.0% |
| AGCCTACATCCTGGATCAAT+TGG | - | chr6_1:96942349-96942368 | Msa0900730:CDS | 45.0% | |
| CACCAATTGATCCAGGATGT+AGG | + | chr6_1:96942354-96942373 | None:intergenic | 45.0% | |
| ! | ATTATTGACTGCGGCCAATC+CGG | + | chr6_1:96942431-96942450 | None:intergenic | 45.0% |
| ATTCACGCATTCAGTGGAGT+TGG | + | chr6_1:96942531-96942550 | None:intergenic | 45.0% | |
| TCATGCATTCACGCATTCAG+TGG | + | chr6_1:96942537-96942556 | None:intergenic | 45.0% | |
| AGAGGTAGGTGTGTACCATA+TGG | + | chr6_1:96942751-96942770 | None:intergenic | 45.0% | |
| !! | GTTCCACAGCCTTGTTCAAT+AGG | - | chr6_1:96943061-96943080 | Msa0900730:intron | 45.0% |
| TCAATAGGATTTGCCACTGG+TGG | - | chr6_1:96943076-96943095 | Msa0900730:intron | 45.0% | |
| GTCTCAGAACTTCGAAATGG+TGG | - | chr6_1:96943249-96943268 | Msa0900730:CDS | 45.0% | |
| TACCGCGATCACTTTACAGT+CGG | - | chr6_1:96943415-96943434 | Msa0900730:intron | 45.0% | |
| TCACTTTACAGTCGGAGACT+TGG | - | chr6_1:96943423-96943442 | Msa0900730:intron | 45.0% | |
| AGTCGGAGACTTGGCAAAAT+TGG | - | chr6_1:96943432-96943451 | Msa0900730:intron | 45.0% | |
| ! | CCGTTCACTGTTATTTGTCG+TGG | - | chr6_1:96943791-96943810 | Msa0900730:intron | 45.0% |
| GGCACTACAGTTTCGCTATA+AGG | - | chr6_1:96943858-96943877 | Msa0900730:intron | 45.0% | |
| CTATAAGGGTTACTCGGTTG+AGG | - | chr6_1:96943873-96943892 | Msa0900730:intron | 45.0% | |
| GAGGAAATGACCTACACTTC+TGG | - | chr6_1:96943892-96943911 | Msa0900730:intron | 45.0% | |
| GAAATGACCTACACTTCTGG+TGG | - | chr6_1:96943895-96943914 | Msa0900730:intron | 45.0% | |
| TAGACACAATTGGCCGAACT+CGG | - | chr6_1:96944194-96944213 | Msa0900730:intron | 45.0% | |
| !! | CGAGTTTTGATCACCGAGTT+CGG | + | chr6_1:96944210-96944229 | None:intergenic | 45.0% |
| TAGAAAGAGGAGGTTCCTCT+GGG | + | chr6_1:96944473-96944492 | None:intergenic | 45.0% | |
| ATAGAAAGAGGAGGTTCCTC+TGG | + | chr6_1:96944474-96944493 | None:intergenic | 45.0% | |
| ! | TCAAGTTGCCATGCCTTGTT+TGG | - | chr6_1:96944734-96944753 | Msa0900730:intron | 45.0% |
| !! | TCTGCAAGGTAAGTTGGTCA+AGG | - | chr6_1:96945289-96945308 | Msa0900730:intron | 45.0% |
| ACTGGAGCCATATCCTTGTT+TGG | + | chr6_1:96945609-96945628 | None:intergenic | 45.0% | |
| TTGGACAATGAACTGAGGAG+TGG | + | chr6_1:96945690-96945709 | None:intergenic | 45.0% | |
| ACGCCATTCCGTGTATTTCT+TGG | + | chr6_1:96945709-96945728 | None:intergenic | 45.0% | |
| CACTGTCTCAGTGTCGTGTA+TGG | + | chr6_1:96941093-96941112 | None:intergenic | 50.0% | |
| CGCTATGTAGCACAACACCT+CGG | + | chr6_1:96941199-96941218 | None:intergenic | 50.0% | |
| GAGGCTAGGGTAATTGTAGC+TGG | - | chr6_1:96941770-96941789 | Msa0900730:intron | 50.0% | |
| GATGATGTGAGCCTACATCC+TGG | - | chr6_1:96942340-96942359 | Msa0900730:intron | 50.0% | |
| !! | CCATTGATGTGCTGACTGTG+TGG | + | chr6_1:96942455-96942474 | None:intergenic | 50.0% |
| CCACACAGTCAGCACATCAA+TGG | - | chr6_1:96942452-96942471 | Msa0900730:intron | 50.0% | |
| GCAACCTCCCCACAAAAAGA+AGG | + | chr6_1:96943107-96943126 | None:intergenic | 50.0% | |
| TTTGTGGGGAGGTTGCATGA+TGG | - | chr6_1:96943111-96943130 | Msa0900730:intron | 50.0% | |
| ATGACTCTTGCAGCCATAGC+TGG | - | chr6_1:96943285-96943304 | Msa0900730:intron | 50.0% | |
| CTCCGACTGTAAAGTGATCG+CGG | + | chr6_1:96943420-96943439 | None:intergenic | 50.0% | |
| AGATCAGTTGCAAGCGGATG+AGG | + | chr6_1:96943597-96943616 | None:intergenic | 50.0% | |
| ATAGTGCGCGGTTCATCACA+CGG | + | chr6_1:96943768-96943787 | None:intergenic | 50.0% | |
| AGTGAACGGTGAATAGTGCG+CGG | + | chr6_1:96943780-96943799 | None:intergenic | 50.0% | |
| GGCGATAGTTCATGTTGCAG+CGG | - | chr6_1:96943837-96943856 | Msa0900730:intron | 50.0% | |
| ! | GTTCTCACCACCAGAAGTGT+AGG | + | chr6_1:96943905-96943924 | None:intergenic | 50.0% |
| CCAGTGATAACCCTGAGAGA+AGG | + | chr6_1:96944362-96944381 | None:intergenic | 50.0% | |
| CCTTCTCTCAGGGTTATCAC+TGG | - | chr6_1:96944359-96944378 | Msa0900730:CDS | 50.0% | |
| TTGCAACATGTTGTCCCCAG+AGG | - | chr6_1:96944455-96944474 | Msa0900730:intron | 50.0% | |
| AGAAAGAGGAGGTTCCTCTG+GGG | + | chr6_1:96944472-96944491 | None:intergenic | 50.0% | |
| ! | GGCTCCAGTTTTCACAGACT+TGG | - | chr6_1:96945620-96945639 | Msa0900730:CDS | 50.0% |
| CCAGCCAAGTCTGTGAAAAC+TGG | + | chr6_1:96945627-96945646 | None:intergenic | 50.0% | |
| ! | CCAGTTTTCACAGACTTGGC+TGG | - | chr6_1:96945624-96945643 | Msa0900730:CDS | 50.0% |
| ! | CTGAGGAGTGGTCCTTTTGA+AGG | + | chr6_1:96945678-96945697 | None:intergenic | 50.0% |
| TGCAGGGTTCTGTAGAGGCT+AGG | - | chr6_1:96941756-96941775 | Msa0900730:intron | 55.0% | |
| GCAGGGTTCTGTAGAGGCTA+GGG | - | chr6_1:96941757-96941776 | Msa0900730:intron | 55.0% | |
| ! | GGCAATTGAGCAGGTTGGAG+TGG | - | chr6_1:96942276-96942295 | Msa0900730:intron | 55.0% |
| GCGAGTGCACCAATTGATCC+AGG | + | chr6_1:96942361-96942380 | None:intergenic | 55.0% | |
| GGATGAGGAAAGACAGCGAC+CGG | + | chr6_1:96943582-96943601 | None:intergenic | 55.0% | |
| TTGGGTTTCGAAGGCTCGTC+AGG | - | chr6_1:96945814-96945833 | Msa0900730:five_prime_UTR | 55.0% | |
| TGGGTTTCGAAGGCTCGTCA+GGG | - | chr6_1:96945815-96945834 | Msa0900730:five_prime_UTR | 55.0% | |
| ATGCTCCTTGAGGTCTGCCT+TGG | + | chr6_1:96945847-96945866 | None:intergenic | 55.0% | |
| GGGCTTCAGCTGCTTGTGTC+AGG | - | chr6_1:96941029-96941048 | Msa0900730:intron | 60.0% | |
| ! | GCAGGTTGGAGTGGAGACCA+TGG | - | chr6_1:96942285-96942304 | Msa0900730:intron | 60.0% |
| TGGTGCACTCGCTCGTGAGA+TGG | - | chr6_1:96942369-96942388 | Msa0900730:CDS | 60.0% | |
| TGAGGAAAGACAGCGACCGG+AGG | + | chr6_1:96943579-96943598 | None:intergenic | 60.0% | |
| CTTGAGGTCTGCCTTGGTCC+TGG | + | chr6_1:96945841-96945860 | None:intergenic | 60.0% | |
| CAGGACCAAGGCAGACCTCA+AGG | - | chr6_1:96945839-96945858 | Msa0900730:five_prime_UTR | 60.0% | |
| TTCGAAGGCTCGTCAGGGCC+AGG | - | chr6_1:96945820-96945839 | Msa0900730:five_prime_UTR | 65.0% | |
| GCTCGTCAGGGCCAGGACCA+AGG | - | chr6_1:96945827-96945846 | Msa0900730:five_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 96940075 | 96945897 | 96940075 | ID=Msa0900730;Name=Msa0900730 |
| chr6_1 | mRNA | 96940075 | 96945897 | 96940075 | ID=Msa0900730-mRNA-1;Parent=Msa0900730;Name=Msa0900730-mRNA-1;_AED=0.13;_eAED=0.13;_QI=211|1|1|1|1|1|14|148|521 |
| chr6_1 | exon | 96940075 | 96940381 | 96940075 | ID=Msa0900730-mRNA-1:exon:16875;Parent=Msa0900730-mRNA-1 |
| chr6_1 | exon | 96940676 | 96940798 | 96940676 | ID=Msa0900730-mRNA-1:exon:16874;Parent=Msa0900730-mRNA-1 |
| chr6_1 | exon | 96941457 | 96941602 | 96941457 | ID=Msa0900730-mRNA-1:exon:16873;Parent=Msa0900730-mRNA-1 |
| chr6_1 | exon | 96942056 | 96942267 | 96942056 | ID=Msa0900730-mRNA-1:exon:16872;Parent=Msa0900730-mRNA-1 |
| chr6_1 | exon | 96942344 | 96942422 | 96942344 | ID=Msa0900730-mRNA-1:exon:16871;Parent=Msa0900730-mRNA-1 |
| chr6_1 | exon | 96942666 | 96942762 | 96942666 | ID=Msa0900730-mRNA-1:exon:16870;Parent=Msa0900730-mRNA-1 |
| chr6_1 | exon | 96942840 | 96942902 | 96942840 | ID=Msa0900730-mRNA-1:exon:16869;Parent=Msa0900730-mRNA-1 |
| chr6_1 | exon | 96943218 | 96943295 | 96943218 | ID=Msa0900730-mRNA-1:exon:16868;Parent=Msa0900730-mRNA-1 |
| chr6_1 | exon | 96943567 | 96943683 | 96943567 | ID=Msa0900730-mRNA-1:exon:16867;Parent=Msa0900730-mRNA-1 |
| chr6_1 | exon | 96944140 | 96944211 | 96944140 | ID=Msa0900730-mRNA-1:exon:16866;Parent=Msa0900730-mRNA-1 |
| chr6_1 | exon | 96944307 | 96944408 | 96944307 | ID=Msa0900730-mRNA-1:exon:16865;Parent=Msa0900730-mRNA-1 |
| chr6_1 | exon | 96944504 | 96944678 | 96944504 | ID=Msa0900730-mRNA-1:exon:16864;Parent=Msa0900730-mRNA-1 |
| chr6_1 | exon | 96944922 | 96944977 | 96944922 | ID=Msa0900730-mRNA-1:exon:16863;Parent=Msa0900730-mRNA-1 |
| chr6_1 | exon | 96945600 | 96945897 | 96945600 | ID=Msa0900730-mRNA-1:exon:16862;Parent=Msa0900730-mRNA-1 |
| chr6_1 | five_prime_UTR | 96945687 | 96945897 | 96945687 | ID=Msa0900730-mRNA-1:five_prime_utr;Parent=Msa0900730-mRNA-1 |
| chr6_1 | CDS | 96945600 | 96945686 | 96945600 | ID=Msa0900730-mRNA-1:cds;Parent=Msa0900730-mRNA-1 |
| chr6_1 | CDS | 96944922 | 96944977 | 96944922 | ID=Msa0900730-mRNA-1:cds;Parent=Msa0900730-mRNA-1 |
| chr6_1 | CDS | 96944504 | 96944678 | 96944504 | ID=Msa0900730-mRNA-1:cds;Parent=Msa0900730-mRNA-1 |
| chr6_1 | CDS | 96944307 | 96944408 | 96944307 | ID=Msa0900730-mRNA-1:cds;Parent=Msa0900730-mRNA-1 |
| chr6_1 | CDS | 96944140 | 96944211 | 96944140 | ID=Msa0900730-mRNA-1:cds;Parent=Msa0900730-mRNA-1 |
| chr6_1 | CDS | 96943567 | 96943683 | 96943567 | ID=Msa0900730-mRNA-1:cds;Parent=Msa0900730-mRNA-1 |
| chr6_1 | CDS | 96943218 | 96943295 | 96943218 | ID=Msa0900730-mRNA-1:cds;Parent=Msa0900730-mRNA-1 |
| chr6_1 | CDS | 96942840 | 96942902 | 96942840 | ID=Msa0900730-mRNA-1:cds;Parent=Msa0900730-mRNA-1 |
| chr6_1 | CDS | 96942666 | 96942762 | 96942666 | ID=Msa0900730-mRNA-1:cds;Parent=Msa0900730-mRNA-1 |
| chr6_1 | CDS | 96942344 | 96942422 | 96942344 | ID=Msa0900730-mRNA-1:cds;Parent=Msa0900730-mRNA-1 |
| chr6_1 | CDS | 96942056 | 96942267 | 96942056 | ID=Msa0900730-mRNA-1:cds;Parent=Msa0900730-mRNA-1 |
| chr6_1 | CDS | 96941457 | 96941602 | 96941457 | ID=Msa0900730-mRNA-1:cds;Parent=Msa0900730-mRNA-1 |
| chr6_1 | CDS | 96940676 | 96940798 | 96940676 | ID=Msa0900730-mRNA-1:cds;Parent=Msa0900730-mRNA-1 |
| chr6_1 | CDS | 96940223 | 96940381 | 96940223 | ID=Msa0900730-mRNA-1:cds;Parent=Msa0900730-mRNA-1 |
| chr6_1 | three_prime_UTR | 96940075 | 96940222 | 96940075 | ID=Msa0900730-mRNA-1:three_prime_utr;Parent=Msa0900730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
