AlfalfaGEDB | Msa1402410

M. sativa cultivar zhongmu-4 / Msa1402410

KEGG: K02889
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF01157.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1402410	XP_013468487.1	100.000	164	0	0	1	164	1	164	1.27e-116	337

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1402410	sp\|Q43291\|RL211_ARATH	81.098	164	31	0	1	164	1	164	3.52e-100	288

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1402410	A0A2K3LGM4	100.000	164	0	0	1	164	1	164	6.06e-117	337

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0191450	Msa1402410	0.833992	3.876834e-56	-8.615850e-47
Msa0191550	Msa1402410	0.825282	5.103830e-54	-8.615850e-47
Msa0233550	Msa1402410	0.807005	6.244544e-50	-8.615850e-47
Msa0426090	Msa1402410	0.804034	2.622370e-49	-8.615850e-47
Msa0472480	Msa1402410	0.803910	2.781965e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1402410	MtrunA17_Chr1g0183851	100.000	164	0	0	1	164	1	164	1.17e-120	337
Msa1402410	MtrunA17_Chr7g0268461	99.390	164	1	0	1	164	1	164	1.81e-120	336

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1402410	AT1G09590.1	81.098	164	31	1	164	1	164	3.58e-101	288
Msa1402410	AT1G09690.1	81.098	164	31	1	164	1	164	3.58e-101	288
Msa1402410	AT1G57660.1	80.488	164	32	1	164	1	164	1.08e-100	286
Msa1402410	AT1G57860.1	80.488	164	32	1	164	1	164	1.08e-100	286

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Find 71 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGGTTTAGGTCCTTC+TGG	0.327783	tig0022876:-25080	None:intergenic
AAACCTGGTTTCATGGTTGA+AGG	0.456376	tig0022876:+25092	Msa1402410:CDS
AAAGCCCAATAAGAAACCCT+AGG	0.603225	tig0022876:+24021	Msa1402410:five_prime_UTR
AACGTTACCAAACGTGCTAT+TGG	0.472288	tig0022876:+24330	Msa1402410:CDS
AACTCCTCGGTGCACCTAGA+TGG	0.414621	tig0022876:-24978	None:intergenic
AAGCCAGAAGGACCTAAACC+TGG	0.625100	tig0022876:+25077	Msa1402410:CDS
AAGGCTGAGGCTAAGGCAAA+GGG	0.569105	tig0022876:+25032	Msa1402410:CDS
AAGTTCTACCATGGGCGTAC+CGG	0.536603	tig0022876:+24297	Msa1402410:CDS
ACTACCTTTAAGTGAAATCG+AGG	0.644447	tig0022876:+25243	Msa1402410:intron
ACTCTTTCTCTCGTCCATTC+AGG	0.293911	tig0022876:+24172	Msa1402410:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATTCTTAATCTTCCTCAAA+CGG	-	tig0022876:25004-25023	None:intergenic	30.0%
TTAACCACATCATATGGAAT+TGG	-	tig0022876:25140-25159	None:intergenic	30.0%
AGATCATTAACCACATCATA+TGG	-	tig0022876:25146-25165	None:intergenic	30.0%
TGATGTGGTTAATGATCTTA+AGG	+	tig0022876:25148-25167	Msa1402410:CDS	30.0%
GATGTGGTTAATGATCTTAA+GGG	+	tig0022876:25149-25168	Msa1402410:CDS	30.0%
CATTCTTAATCTTCCTCAAA+CGG	-	tig0022876:25004-25023	None:intergenic	30.0%
TTAACCACATCATATGGAAT+TGG	-	tig0022876:25140-25159	None:intergenic	30.0%
AGATCATTAACCACATCATA+TGG	-	tig0022876:25146-25165	None:intergenic	30.0%
TGATGTGGTTAATGATCTTA+AGG	+	tig0022876:25148-25167	Msa1402410:CDS	30.0%
GATGTGGTTAATGATCTTAA+GGG	+	tig0022876:25149-25168	Msa1402410:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0022876	gene	23979	25389	23979	ID=Msa1402410;Name=Msa1402410
tig0022876	mRNA	23979	25389	23979	ID=Msa1402410-mRNA-1;Parent=Msa1402410;Name=Msa1402410-mRNA-1;_AED=0.02;_eAED=0.02;_QI=156\|1\|1\|1\|0.5\|0.33\|3\|188\|164
tig0022876	exon	23979	24371	23979	ID=Msa1402410-mRNA-1:exon:18896;Parent=Msa1402410-mRNA-1
tig0022876	exon	24924	25234	24924	ID=Msa1402410-mRNA-1:exon:18897;Parent=Msa1402410-mRNA-1
tig0022876	exon	25255	25389	25255	ID=Msa1402410-mRNA-1:exon:18898;Parent=Msa1402410-mRNA-1
tig0022876	five_prime_UTR	23979	24134	23979	ID=Msa1402410-mRNA-1:five_prime_utr;Parent=Msa1402410-mRNA-1
tig0022876	CDS	24135	24371	24135	ID=Msa1402410-mRNA-1:cds;Parent=Msa1402410-mRNA-1
tig0022876	CDS	24924	25181	24924	ID=Msa1402410-mRNA-1:cds;Parent=Msa1402410-mRNA-1
tig0022876	three_prime_UTR	25182	25234	25182	ID=Msa1402410-mRNA-1:three_prime_utr;Parent=Msa1402410-mRNA-1
tig0022876	three_prime_UTR	25255	25389	25255	ID=Msa1402410-mRNA-1:three_prime_utr;Parent=Msa1402410-mRNA-1

Gene Sequence

>Msa1402410

ATGCCGGCTGGTCATGGTTTGAGATCTCGCACGAGAGACTCTTTCTCTCGTCCATTCAGGAAGAAGGGTACAATCGCCCTCGCCACTTACCTCAGAACCTATCACATCGGCGATTATGTCGATATCAGGGTTAACGGTGCCGTTCATAAGGGTATGCCACACAAGTTCTACCATGGGCGTACCGGTCGTGTCTGGAACGTTACCAAACGTGCTATTGGTGTTGAGGTTAACAAACAAGTGAGGAACAAGATTCTCAGGAAGAGAATCCATGTTCGAGTGGAGCATGTTATGCCATCTAGGTGCACCGAGGAGTTCCGTTTGAGGAAGATTAAGAATGATCAACTTAAGGCTGAGGCTAAGGCAAAGGGTGAAGTCATTAGCACCAAGCGCAAGCCAGAAGGACCTAAACCTGGTTTCATGGTTGAAGGAGCTACATTGGAAACTGTTACTCCAATTCCATATGATGTGGTTAATGATCTTAAGGGAGGATACTAG

Protein sequence

>Msa1402410

MPAGHGLRSRTRDSFSRPFRKKGTIALATYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY*