Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0191550 | XP_003593461.1 | 100.000 | 146 | 0 | 0 | 1 | 146 | 1 | 146 | 8.96e-100 | 293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0191550 | sp|Q9FJX2|RL262_ARATH | 88.356 | 146 | 17 | 0 | 1 | 146 | 1 | 146 | 1.02e-91 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0191550 | G7ILF2 | 100.000 | 146 | 0 | 0 | 1 | 146 | 1 | 146 | 4.28e-100 | 293 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0191550 | 0.879728 | 9.830242e-70 | -8.615850e-47 |
| Msa0003330 | Msa0191550 | 0.874402 | 6.946660e-68 | -8.615850e-47 |
| Msa0003360 | Msa0191550 | 0.804196 | 2.426007e-49 | -8.615850e-47 |
| Msa0027590 | Msa0191550 | 0.894828 | 1.708026e-75 | -8.615850e-47 |
| Msa0040220 | Msa0191550 | 0.855185 | 7.473944e-62 | -8.615850e-47 |
| Msa0065110 | Msa0191550 | 0.809536 | 1.802592e-50 | -8.615850e-47 |
| Msa0072570 | Msa0191550 | 0.830316 | 3.145662e-55 | -8.615850e-47 |
| Msa0075350 | Msa0191550 | 0.867644 | 1.175897e-65 | -8.615850e-47 |
| Msa0079590 | Msa0191550 | 0.810599 | 1.063906e-50 | -8.615850e-47 |
| Msa0087910 | Msa0191550 | 0.865817 | 4.482791e-65 | -8.615850e-47 |
| Msa0094210 | Msa0191550 | 0.811199 | 7.890701e-51 | -8.615850e-47 |
| Msa0114570 | Msa0191550 | 0.845722 | 3.402305e-59 | -8.615850e-47 |
| Msa0114600 | Msa0191550 | 0.827090 | 1.895072e-54 | -8.615850e-47 |
| Msa0123290 | Msa0191550 | 0.804488 | 2.108730e-49 | -8.615850e-47 |
| Msa0128330 | Msa0191550 | 0.901308 | 3.056448e-78 | -8.615850e-47 |
| Msa0128750 | Msa0191550 | 0.834665 | 2.628646e-56 | -8.615850e-47 |
| Msa0132460 | Msa0191550 | 0.871835 | 5.047465e-67 | -8.615850e-47 |
| Msa0134580 | Msa0191550 | 0.892991 | 9.516472e-75 | -8.615850e-47 |
| Msa0146610 | Msa0191550 | 0.809753 | 1.619375e-50 | -8.615850e-47 |
| Msa0167860 | Msa0191550 | 0.897043 | 2.060167e-76 | -8.615850e-47 |
| Msa0168320 | Msa0191550 | 0.855271 | 7.057254e-62 | -8.615850e-47 |
| Msa0172930 | Msa0191550 | 0.803546 | 3.310623e-49 | -8.615850e-47 |
| Msa0174580 | Msa0191550 | 0.891544 | 3.604495e-74 | -8.615850e-47 |
| Msa0182050 | Msa0191550 | 0.873951 | 9.872717e-68 | -8.615850e-47 |
| Msa0182100 | Msa0191550 | 0.845213 | 4.673108e-59 | -8.615850e-47 |
| Msa0186740 | Msa0191550 | 0.820588 | 6.336789e-53 | -8.615850e-47 |
| Msa0187810 | Msa0191550 | 0.801187 | 1.013413e-48 | -8.615850e-47 |
| Msa0191450 | Msa0191550 | 0.986072 | 1.397099e-165 | -8.615850e-47 |
| Msa0191550 | Msa0192300 | 0.854065 | 1.576870e-61 | -8.615850e-47 |
| Msa0191550 | Msa0192750 | 0.826364 | 2.825607e-54 | -8.615850e-47 |
| Msa0191550 | Msa0194940 | 0.914406 | 1.990095e-84 | -8.615850e-47 |
| Msa0191550 | Msa0195030 | 0.806120 | 9.595770e-50 | -8.615850e-47 |
| Msa0191550 | Msa0210330 | 0.803820 | 2.904947e-49 | -8.615850e-47 |
| Msa0191550 | Msa0210360 | 0.817296 | 3.550166e-52 | -8.615850e-47 |
| Msa0191550 | Msa0222730 | 0.801484 | 8.808995e-49 | -8.615850e-47 |
| Msa0191550 | Msa0233550 | 0.901555 | 2.381320e-78 | -8.615850e-47 |
| Msa0191550 | Msa0235050 | 0.864650 | 1.043853e-64 | -8.615850e-47 |
| Msa0191550 | Msa0239420 | 0.876184 | 1.708303e-68 | -8.615850e-47 |
| Msa0191550 | Msa0277600 | 0.893183 | 7.967876e-75 | -8.615850e-47 |
| Msa0191550 | Msa0281330 | 0.859940 | 2.921640e-63 | -8.615850e-47 |
| Msa0191550 | Msa0281370 | 0.891835 | 2.762026e-74 | -8.615850e-47 |
| Msa0191550 | Msa0297830 | 0.851620 | 7.884383e-61 | -8.615850e-47 |
| Msa0191550 | Msa0301220 | 0.833005 | 6.836874e-56 | -8.615850e-47 |
| Msa0191550 | Msa0301250 | 0.857572 | 1.489974e-62 | -8.615850e-47 |
| Msa0191550 | Msa0312210 | 0.840399 | 8.901278e-58 | -8.615850e-47 |
| Msa0191550 | Msa0313060 | 0.878700 | 2.270541e-69 | -8.615850e-47 |
| Msa0191550 | Msa0313520 | 0.810667 | 1.028496e-50 | -8.615850e-47 |
| Msa0191550 | Msa0315430 | 0.890857 | 6.742402e-74 | -8.615850e-47 |
| Msa0191550 | Msa0335840 | 0.859962 | 2.876005e-63 | -8.615850e-47 |
| Msa0191550 | Msa0340560 | 0.843865 | 1.076956e-58 | -8.615850e-47 |
| Msa0191550 | Msa0369410 | 0.843803 | 1.118909e-58 | -8.615850e-47 |
| Msa0191550 | Msa0371490 | 0.860903 | 1.492750e-63 | -8.615850e-47 |
| Msa0191550 | Msa0376850 | 0.811024 | 8.611199e-51 | -8.615850e-47 |
| Msa0191550 | Msa0377520 | 0.854055 | 1.587455e-61 | -8.615850e-47 |
| Msa0191550 | Msa0382960 | 0.813118 | 3.009111e-51 | -8.615850e-47 |
| Msa0191550 | Msa0419710 | 0.803653 | 3.145598e-49 | -8.615850e-47 |
| Msa0191550 | Msa0426090 | 0.902028 | 1.472523e-78 | -8.615850e-47 |
| Msa0191550 | Msa0426250 | 0.901301 | 3.075945e-78 | -8.615850e-47 |
| Msa0191550 | Msa0436750 | 0.801130 | 1.040829e-48 | -8.615850e-47 |
| Msa0191550 | Msa0438960 | 0.809803 | 1.579770e-50 | -8.615850e-47 |
| Msa0191550 | Msa0450150 | 0.810375 | 1.189374e-50 | -8.615850e-47 |
| Msa0191550 | Msa0463520 | 0.810301 | 1.234104e-50 | -8.615850e-47 |
| Msa0191550 | Msa0468440 | 0.802142 | 6.455710e-49 | -8.615850e-47 |
| Msa0191550 | Msa0471880 | 0.858863 | 6.151922e-63 | -8.615850e-47 |
| Msa0191550 | Msa0472480 | 0.896722 | 2.807765e-76 | -8.615850e-47 |
| Msa0191550 | Msa0473570 | 0.805114 | 1.560535e-49 | -8.615850e-47 |
| Msa0191550 | Msa0475810 | 0.837389 | 5.350291e-57 | -8.615850e-47 |
| Msa0191550 | Msa0481520 | 0.895466 | 9.329252e-76 | -8.615850e-47 |
| Msa0191550 | Msa0481850 | 0.832832 | 7.546505e-56 | -8.615850e-47 |
| Msa0191550 | Msa0482560 | 0.807590 | 4.692237e-50 | -8.615850e-47 |
| Msa0191550 | Msa0484730 | 0.801114 | 1.048885e-48 | -8.615850e-47 |
| Msa0191550 | Msa0511760 | 0.829781 | 4.248859e-55 | -8.615850e-47 |
| Msa0191550 | Msa0516830 | 0.811180 | 7.965492e-51 | -8.615850e-47 |
| Msa0191550 | Msa0517480 | 0.865401 | 6.067632e-65 | -8.615850e-47 |
| Msa0191550 | Msa0529900 | 0.874198 | 8.145729e-68 | -8.615850e-47 |
| Msa0191550 | Msa0540480 | 0.827667 | 1.378292e-54 | -8.615850e-47 |
| Msa0191550 | Msa0547920 | 0.872765 | 2.473668e-67 | -8.615850e-47 |
| Msa0191550 | Msa0550420 | 0.841609 | 4.282342e-58 | -8.615850e-47 |
| Msa0191550 | Msa0573550 | 0.907121 | 7.130216e-81 | -8.615850e-47 |
| Msa0191550 | Msa0574780 | 0.848102 | 7.590606e-60 | -8.615850e-47 |
| Msa0191550 | Msa0579830 | 0.869004 | 4.283865e-66 | -8.615850e-47 |
| Msa0191550 | Msa0582070 | 0.845657 | 3.541607e-59 | -8.615850e-47 |
| Msa0191550 | Msa0584030 | 0.805733 | 1.157811e-49 | -8.615850e-47 |
| Msa0191550 | Msa0591030 | 0.804279 | 2.331233e-49 | -8.615850e-47 |
| Msa0191550 | Msa0591050 | 0.859577 | 3.757135e-63 | -8.615850e-47 |
| Msa0191550 | Msa0597240 | 0.848159 | 7.321982e-60 | -8.615850e-47 |
| Msa0191550 | Msa0602900 | 0.858572 | 7.514871e-63 | -8.615850e-47 |
| Msa0191550 | Msa0605890 | 0.898295 | 6.102467e-77 | -8.615850e-47 |
| Msa0191550 | Msa0619230 | 0.877574 | 5.632177e-69 | -8.615850e-47 |
| Msa0191550 | Msa0622230 | 0.843579 | 1.284595e-58 | -8.615850e-47 |
| Msa0191550 | Msa0643960 | 0.862896 | 3.663291e-64 | -8.615850e-47 |
| Msa0191550 | Msa0649890 | 0.863984 | 1.684964e-64 | -8.615850e-47 |
| Msa0191550 | Msa0653060 | 0.871020 | 9.389234e-67 | -8.615850e-47 |
| Msa0191550 | Msa0681220 | 0.821119 | 4.782397e-53 | -8.615850e-47 |
| Msa0191550 | Msa0686550 | 0.881359 | 2.562699e-70 | -8.615850e-47 |
| Msa0191550 | Msa0694400 | 0.872233 | 3.721757e-67 | -8.615850e-47 |
| Msa0191550 | Msa0704860 | 0.860806 | 1.597499e-63 | -8.615850e-47 |
| Msa0191550 | Msa0705800 | 0.875743 | 2.421731e-68 | -8.615850e-47 |
| Msa0191550 | Msa0708630 | 0.872391 | 3.298235e-67 | -8.615850e-47 |
| Msa0191550 | Msa0712610 | 0.815884 | 7.354878e-52 | -8.615850e-47 |
| Msa0191550 | Msa0748350 | 0.845764 | 3.312461e-59 | -8.615850e-47 |
| Msa0191550 | Msa0749000 | 0.802023 | 6.827924e-49 | -8.615850e-47 |
| Msa0191550 | Msa0758420 | 0.829068 | 6.330567e-55 | -8.615850e-47 |
| Msa0191550 | Msa0776890 | 0.802958 | 4.381985e-49 | -8.615850e-47 |
| Msa0191550 | Msa0788380 | 0.886750 | 2.606855e-72 | -8.615850e-47 |
| Msa0191550 | Msa0790450 | 0.828045 | 1.118105e-54 | -8.615850e-47 |
| Msa0191550 | Msa0796490 | 0.810817 | 9.545222e-51 | -8.615850e-47 |
| Msa0191550 | Msa0799830 | 0.815784 | 7.740433e-52 | -8.615850e-47 |
| Msa0191550 | Msa0821070 | 0.803646 | 3.156976e-49 | -8.615850e-47 |
| Msa0191550 | Msa0822580 | 0.870373 | 1.532750e-66 | -8.615850e-47 |
| Msa0191550 | Msa0834220 | 0.813580 | 2.381731e-51 | -8.615850e-47 |
| Msa0191550 | Msa0838070 | 0.841847 | 3.705706e-58 | -8.615850e-47 |
| Msa0191550 | Msa0861320 | 0.839340 | 1.680253e-57 | -8.615850e-47 |
| Msa0191550 | Msa0902730 | 0.801560 | 8.500353e-49 | -8.615850e-47 |
| Msa0191550 | Msa0915540 | 0.829443 | 5.132965e-55 | -8.615850e-47 |
| Msa0191550 | Msa0929680 | 0.814687 | 1.357095e-51 | -8.615850e-47 |
| Msa0191550 | Msa0929700 | 0.892115 | 2.136997e-74 | -8.615850e-47 |
| Msa0191550 | Msa0930100 | 0.828807 | 7.321079e-55 | -8.615850e-47 |
| Msa0191550 | Msa0930790 | 0.843989 | 9.981514e-59 | -8.615850e-47 |
| Msa0191550 | Msa0930890 | 0.823543 | 1.309291e-53 | -8.615850e-47 |
| Msa0191550 | Msa1037290 | 0.908693 | 1.293034e-81 | -8.615850e-47 |
| Msa0191550 | Msa1040160 | 0.877552 | 5.735617e-69 | -8.615850e-47 |
| Msa0191550 | Msa1041680 | 0.890219 | 1.200158e-73 | -8.615850e-47 |
| Msa0191550 | Msa1042100 | 0.818085 | 2.355721e-52 | -8.615850e-47 |
| Msa0191550 | Msa1047020 | 0.806658 | 7.391041e-50 | -8.615850e-47 |
| Msa0191550 | Msa1050100 | 0.800400 | 1.467390e-48 | -8.615850e-47 |
| Msa0191550 | Msa1054280 | 0.828347 | 9.454447e-55 | -8.615850e-47 |
| Msa0191550 | Msa1068660 | 0.802341 | 5.874718e-49 | -8.615850e-47 |
| Msa0191550 | Msa1078870 | 0.821838 | 3.262458e-53 | -8.615850e-47 |
| Msa0191550 | Msa1078980 | 0.836881 | 7.213600e-57 | -8.615850e-47 |
| Msa0191550 | Msa1079910 | 0.812855 | 3.436691e-51 | -8.615850e-47 |
| Msa0191550 | Msa1080350 | 0.821701 | 3.509975e-53 | -8.615850e-47 |
| Msa0191550 | Msa1082170 | 0.875738 | 2.431390e-68 | -8.615850e-47 |
| Msa0191550 | Msa1083370 | 0.870394 | 1.508170e-66 | -8.615850e-47 |
| Msa0191550 | Msa1093500 | 0.802620 | 5.144710e-49 | -8.615850e-47 |
| Msa0191550 | Msa1096900 | 0.825820 | 3.806038e-54 | -8.615850e-47 |
| Msa0191550 | Msa1116940 | 0.822376 | 2.448800e-53 | -8.615850e-47 |
| Msa0191550 | Msa1124850 | 0.810262 | 1.258269e-50 | -8.615850e-47 |
| Msa0191550 | Msa1125860 | 0.811600 | 6.454704e-51 | -8.615850e-47 |
| Msa0191550 | Msa1126060 | 0.813985 | 1.940184e-51 | -8.615850e-47 |
| Msa0191550 | Msa1126520 | 0.872394 | 3.288679e-67 | -8.615850e-47 |
| Msa0191550 | Msa1126690 | 0.847434 | 1.159027e-59 | -8.615850e-47 |
| Msa0191550 | Msa1147670 | 0.815720 | 7.999875e-52 | -8.615850e-47 |
| Msa0191550 | Msa1156830 | 0.827859 | 1.239749e-54 | -8.615850e-47 |
| Msa0191550 | Msa1164150 | 0.927014 | 2.116777e-91 | -8.615850e-47 |
| Msa0191550 | Msa1165640 | 0.845084 | 5.062051e-59 | -8.615850e-47 |
| Msa0191550 | Msa1166570 | 0.890636 | 8.233779e-74 | -8.615850e-47 |
| Msa0191550 | Msa1167540 | 0.808580 | 2.888041e-50 | -8.615850e-47 |
| Msa0191550 | Msa1169180 | 0.836961 | 6.884844e-57 | -8.615850e-47 |
| Msa0191550 | Msa1180000 | 0.862398 | 5.213189e-64 | -8.615850e-47 |
| Msa0191550 | Msa1186030 | 0.885014 | 1.170883e-71 | -8.615850e-47 |
| Msa0191550 | Msa1206240 | 0.812289 | 4.568736e-51 | -8.615850e-47 |
| Msa0191550 | Msa1208330 | 0.811472 | 6.883254e-51 | -8.615850e-47 |
| Msa0191550 | Msa1218170 | 0.844267 | 8.404435e-59 | -8.615850e-47 |
| Msa0191550 | Msa1235950 | 0.843557 | 1.302643e-58 | -8.615850e-47 |
| Msa0191550 | Msa1235980 | 0.853006 | 3.177230e-61 | -8.615850e-47 |
| Msa0191550 | Msa1237040 | 0.849673 | 2.781004e-60 | -8.615850e-47 |
| Msa0191550 | Msa1240270 | 0.884005 | 2.772840e-71 | -8.615850e-47 |
| Msa0191550 | Msa1258540 | 0.879382 | 1.304547e-69 | -8.615850e-47 |
| Msa0191550 | Msa1270640 | 0.854621 | 1.089656e-61 | -8.615850e-47 |
| Msa0191550 | Msa1270710 | 0.848679 | 5.256748e-60 | -8.615850e-47 |
| Msa0191550 | Msa1278130 | 0.834097 | 3.650049e-56 | -8.615850e-47 |
| Msa0191550 | Msa1284060 | 0.824857 | 6.429158e-54 | -8.615850e-47 |
| Msa0191550 | Msa1295150 | 0.813131 | 2.990026e-51 | -8.615850e-47 |
| Msa0191550 | Msa1301640 | 0.850741 | 1.395892e-60 | -8.615850e-47 |
| Msa0191550 | Msa1311400 | 0.876325 | 1.527366e-68 | -8.615850e-47 |
| Msa0191550 | Msa1317390 | 0.868844 | 4.826790e-66 | -8.615850e-47 |
| Msa0191550 | Msa1330730 | 0.835077 | 2.070258e-56 | -8.615850e-47 |
| Msa0191550 | Msa1332250 | 0.811312 | 7.456308e-51 | -8.615850e-47 |
| Msa0191550 | Msa1341780 | 0.809094 | 2.242371e-50 | -8.615850e-47 |
| Msa0191550 | Msa1351020 | 0.910678 | 1.431613e-82 | -8.615850e-47 |
| Msa0191550 | Msa1351910 | 0.842995 | 1.839305e-58 | -8.615850e-47 |
| Msa0191550 | Msa1353300 | 0.816225 | 6.170974e-52 | -8.615850e-47 |
| Msa0191550 | Msa1356790 | 0.815320 | 9.822763e-52 | -8.615850e-47 |
| Msa0191550 | Msa1358710 | 0.813908 | 2.017353e-51 | -8.615850e-47 |
| Msa0191550 | Msa1363910 | 0.832541 | 8.911488e-56 | -8.615850e-47 |
| Msa0191550 | Msa1368920 | 0.910109 | 2.705274e-82 | -8.615850e-47 |
| Msa0191550 | Msa1374480 | 0.806929 | 6.478662e-50 | -8.615850e-47 |
| Msa0191550 | Msa1385480 | 0.853576 | 2.181849e-61 | -8.615850e-47 |
| Msa0191550 | Msa1390760 | 0.875406 | 3.160737e-68 | -8.615850e-47 |
| Msa0191550 | Msa1392590 | 0.802813 | 4.694526e-49 | -8.615850e-47 |
| Msa0191550 | Msa1397100 | 0.852685 | 3.924905e-61 | -8.615850e-47 |
| Msa0191550 | Msa1397660 | 0.812391 | 4.340297e-51 | -8.615850e-47 |
| Msa0191550 | Msa1402410 | 0.825282 | 5.103830e-54 | -8.615850e-47 |
| Msa0191550 | Msa1403910 | 0.849636 | 2.847556e-60 | -8.615850e-47 |
| Msa0191550 | Msa1407550 | 0.841700 | 4.052900e-58 | -8.615850e-47 |
| Msa0191550 | Msa1413570 | 0.807207 | 5.656838e-50 | -8.615850e-47 |
| Msa0191550 | Msa1418770 | 0.840782 | 7.066707e-58 | -8.615850e-47 |
| Msa0191550 | Msa1424570 | 0.810089 | 1.370781e-50 | -8.615850e-47 |
| Msa0191550 | Msa1425070 | 0.802294 | 6.005960e-49 | -8.615850e-47 |
| Msa0191550 | Msa1426120 | 0.820405 | 6.978838e-53 | -8.615850e-47 |
| Msa0191550 | Msa1432310 | 0.869168 | 3.790690e-66 | -8.615850e-47 |
| Msa0191550 | Msa1446410 | 0.889784 | 1.776595e-73 | -8.615850e-47 |
| Msa0191550 | Msa1449160 | 0.844230 | 8.596419e-59 | -8.615850e-47 |
| Msa0191550 | Msa1450560 | 0.833583 | 4.906910e-56 | -8.615850e-47 |
| Msa0191550 | Msa1463570 | 0.901276 | 3.155171e-78 | -8.615850e-47 |
| Msa0191550 | Msa1465700 | 0.851608 | 7.942874e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0191550 | MtrunA17_Chr2g0281331 | 100.000 | 146 | 0 | 0 | 1 | 146 | 1 | 146 | 8.25e-104 | 293 |
| Msa0191550 | MtrunA17_Chr5g0401191 | 95.205 | 146 | 7 | 0 | 1 | 146 | 1 | 146 | 1.61e-90 | 259 |
| Msa0191550 | MtrunA17_Chr5g0447011 | 91.096 | 146 | 13 | 0 | 1 | 146 | 1 | 146 | 3.37e-87 | 251 |
| Msa0191550 | MtrunA17_Chr8g0370201 | 56.977 | 86 | 10 | 1 | 30 | 115 | 1 | 59 | 2.09e-23 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0191550 | AT5G67510.1 | 88.356 | 146 | 17 | 0 | 1 | 146 | 1 | 146 | 1.04e-92 | 265 |
| Msa0191550 | AT3G49910.1 | 85.616 | 146 | 21 | 0 | 1 | 146 | 1 | 146 | 1.23e-91 | 262 |
Find 50 sgRNAs with CRISPR-Local
Find 48 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTATGCAGACCGTTGATT+AGG | 0.363868 | 2_1:-7168052 | None:intergenic |
| CATTGAACGGACGTTGTACT+TGG | 0.377101 | 2_1:+7168353 | None:intergenic |
| TCGCAAAGACGACGAAGTTC+AGG | 0.379749 | 2_1:-7168325 | Msa0191550:CDS |
| TTAGTGATAACAACCTTTGA+AGG | 0.395167 | 2_1:+7168174 | None:intergenic |
| ACTTCGTCGTCTTTGCGAAC+AGG | 0.416424 | 2_1:+7168330 | None:intergenic |
| ATGGATCTACCGTTAATGTT+GGG | 0.416486 | 2_1:-7168203 | Msa0191550:CDS |
| GGGTCGTGCTGCTGCTGATA+AGG | 0.420559 | 2_1:-7168103 | Msa0191550:CDS |
| ACGGCTCTTCCTACGGCTGC+TGG | 0.422834 | 2_1:+7168449 | None:intergenic |
| AAGACACGGCGGACGCTTGA+TGG | 0.437229 | 2_1:+7168408 | None:intergenic |
| CACTAAGCTCAGATTGGATA+AGG | 0.438891 | 2_1:-7168157 | Msa0191550:CDS |
| CCTGAGTAACCTTACCTTCA+CGG | 0.446679 | 2_1:+7168280 | None:intergenic |
| AGGATTAACCCCAACATTAA+CGG | 0.448396 | 2_1:+7168194 | None:intergenic |
| TGTTATCACTAAGCTCAGAT+TGG | 0.466490 | 2_1:-7168163 | Msa0191550:CDS |
| GACGAAGTTCAGGTCGTTCG+TGG | 0.488796 | 2_1:-7168315 | Msa0191550:CDS |
| ATTCAAAGGCCGTGAAGGTA+AGG | 0.498862 | 2_1:-7168289 | Msa0191550:CDS |
| CTCAGGTTTACCGTCGCAAG+TGG | 0.512762 | 2_1:-7168263 | Msa0191550:CDS |
| TGTTGGGGTTAATCCTTCAA+AGG | 0.524932 | 2_1:-7168187 | Msa0191550:CDS |
| GCTACTTGATCGTAAGGCTA+AGG | 0.528270 | 2_1:-7168124 | Msa0191550:CDS |
| AATGGATCTACCGTTAATGT+TGG | 0.529601 | 2_1:-7168204 | Msa0191550:CDS |
| CTACGGCTGCTGGAAACTCG+TGG | 0.530535 | 2_1:+7168459 | None:intergenic |
| TGCTGCTGCTGATAAGGAGA+AGG | 0.537077 | 2_1:-7168097 | Msa0191550:CDS |
| GAGCCGTAAGGCTCATTTCA+CGG | 0.545137 | 2_1:-7168433 | Msa0191550:CDS |
| ATCACAAGGGAGAAGGTGAA+TGG | 0.545267 | 2_1:-7168222 | Msa0191550:CDS |
| GAGCCTTACGGCTCTTCCTA+CGG | 0.547173 | 2_1:+7168442 | None:intergenic |
| CTACTTGATCGTAAGGCTAA+GGG | 0.553374 | 2_1:-7168123 | Msa0191550:CDS |
| GTCGTTCGTGGAACATTCAA+AGG | 0.554383 | 2_1:-7168303 | Msa0191550:CDS |
| TAAATCGCTACTTGATCGTA+AGG | 0.555125 | 2_1:-7168130 | Msa0191550:CDS |
| GGGTACTAAGTTTGCTCCTG+AGG | 0.563912 | 2_1:-7168076 | Msa0191550:CDS |
| TGGATCTACCGTTAATGTTG+GGG | 0.564613 | 2_1:-7168202 | Msa0191550:CDS |
| AACGGACGTTGTACTTGGAT+CGG | 0.564652 | 2_1:+7168358 | None:intergenic |
| CCGTGAAGGTAAGGTTACTC+AGG | 0.566699 | 2_1:-7168280 | Msa0191550:CDS |
| CTTTGCGAACAGGCATTGAA+CGG | 0.570326 | 2_1:+7168340 | None:intergenic |
| GTTGTACTTGGATCGGAGAT+CGG | 0.572814 | 2_1:+7168365 | None:intergenic |
| ACGGTCTGCATAATATCCTC+AGG | 0.575139 | 2_1:+7168060 | None:intergenic |
| GCGCCGTGAAATGAGCCTTA+CGG | 0.575259 | 2_1:+7168430 | None:intergenic |
| CGAACGCATCACAAGGGAGA+AGG | 0.580140 | 2_1:-7168229 | Msa0191550:CDS |
| GATCGGAGATCGGCGGAGAG+TGG | 0.584970 | 2_1:+7168375 | None:intergenic |
| TACGGCTGCTGGAAACTCGT+GGG | 0.586325 | 2_1:+7168460 | None:intergenic |
| TTCACATCGAACGCATCACA+AGG | 0.588472 | 2_1:-7168236 | Msa0191550:CDS |
| CAGCCGTAGGAAGAGCCGTA+AGG | 0.591177 | 2_1:-7168445 | Msa0191550:CDS |
| GGAACATTCAAAGGCCGTGA+AGG | 0.606062 | 2_1:-7168294 | Msa0191550:CDS |
| GATTCAAGAATCCTAATCAA+CGG | 0.625900 | 2_1:+7168041 | None:intergenic |
| GCTGCTGCTGATAAGGAGAA+GGG | 0.634378 | 2_1:-7168096 | Msa0191550:CDS |
| TGTGAATCACCCACTTGCGA+CGG | 0.658219 | 2_1:+7168253 | None:intergenic |
| TCAGGTTTACCGTCGCAAGT+GGG | 0.670860 | 2_1:-7168262 | Msa0191550:CDS |
| CACGAGTTTCCAGCAGCCGT+AGG | 0.686122 | 2_1:-7168458 | Msa0191550:CDS |
| GTGGCGCGCTCATTAAGACA+CGG | 0.705562 | 2_1:+7168394 | None:intergenic |
| GTACTTGGATCGGAGATCGG+CGG | 0.709980 | 2_1:+7168368 | None:intergenic |
| TCACATCGAACGCATCACAA+GGG | 0.710980 | 2_1:-7168235 | Msa0191550:CDS |
| GCGCGCTCATTAAGACACGG+CGG | 0.823768 | 2_1:+7168397 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| TTAGTGATAACAACCTTTGA+AGG | + | chr2_1:7168353-7168372 | None:intergenic | 30.0% | |
| AATGGATCTACCGTTAATGT+TGG | - | chr2_1:7168320-7168339 | Msa0191550:CDS | 35.0% | |
| ATGGATCTACCGTTAATGTT+GGG | - | chr2_1:7168321-7168340 | Msa0191550:CDS | 35.0% | |
| AGGATTAACCCCAACATTAA+CGG | + | chr2_1:7168333-7168352 | None:intergenic | 35.0% | |
| TGTTATCACTAAGCTCAGAT+TGG | - | chr2_1:7168361-7168380 | Msa0191550:CDS | 35.0% | |
| TAAATCGCTACTTGATCGTA+AGG | - | chr2_1:7168394-7168413 | Msa0191550:CDS | 35.0% | |
| TGGATCTACCGTTAATGTTG+GGG | - | chr2_1:7168322-7168341 | Msa0191550:CDS | 40.0% | |
| TGTTGGGGTTAATCCTTCAA+AGG | - | chr2_1:7168337-7168356 | Msa0191550:CDS | 40.0% | |
| CACTAAGCTCAGATTGGATA+AGG | - | chr2_1:7168367-7168386 | Msa0191550:CDS | 40.0% | |
| CTACTTGATCGTAAGGCTAA+GGG | - | chr2_1:7168401-7168420 | Msa0191550:CDS | 40.0% | |
| GTTGTACTTGGATCGGAGAT+CGG | + | chr2_1:7168162-7168181 | None:intergenic | 45.0% | |
| AACGGACGTTGTACTTGGAT+CGG | + | chr2_1:7168169-7168188 | None:intergenic | 45.0% | |
| CATTGAACGGACGTTGTACT+TGG | + | chr2_1:7168174-7168193 | None:intergenic | 45.0% | |
| !! | CTTTGCGAACAGGCATTGAA+CGG | + | chr2_1:7168187-7168206 | None:intergenic | 45.0% |
| GTCGTTCGTGGAACATTCAA+AGG | - | chr2_1:7168221-7168240 | Msa0191550:CDS | 45.0% | |
| ATTCAAAGGCCGTGAAGGTA+AGG | - | chr2_1:7168235-7168254 | Msa0191550:CDS | 45.0% | |
| CCTGAGTAACCTTACCTTCA+CGG | + | chr2_1:7168247-7168266 | None:intergenic | 45.0% | |
| TTCACATCGAACGCATCACA+AGG | - | chr2_1:7168288-7168307 | Msa0191550:CDS | 45.0% | |
| TCACATCGAACGCATCACAA+GGG | - | chr2_1:7168289-7168308 | Msa0191550:CDS | 45.0% | |
| ATCACAAGGGAGAAGGTGAA+TGG | - | chr2_1:7168302-7168321 | Msa0191550:CDS | 45.0% | |
| GCTACTTGATCGTAAGGCTA+AGG | - | chr2_1:7168400-7168419 | Msa0191550:CDS | 45.0% | |
| ACGGTCTGCATAATATCCTC+AGG | + | chr2_1:7168467-7168486 | None:intergenic | 45.0% | |
| GAGCCGTAAGGCTCATTTCA+CGG | - | chr2_1:7168091-7168110 | Msa0191550:CDS | 50.0% | |
| ACTTCGTCGTCTTTGCGAAC+AGG | + | chr2_1:7168197-7168216 | None:intergenic | 50.0% | |
| TCGCAAAGACGACGAAGTTC+AGG | - | chr2_1:7168199-7168218 | Msa0191550:CDS | 50.0% | |
| GGAACATTCAAAGGCCGTGA+AGG | - | chr2_1:7168230-7168249 | Msa0191550:CDS | 50.0% | |
| CCGTGAAGGTAAGGTTACTC+AGG | - | chr2_1:7168244-7168263 | Msa0191550:CDS | 50.0% | |
| TCAGGTTTACCGTCGCAAGT+GGG | - | chr2_1:7168262-7168281 | Msa0191550:CDS | 50.0% | |
| TGTGAATCACCCACTTGCGA+CGG | + | chr2_1:7168274-7168293 | None:intergenic | 50.0% | |
| TGCTGCTGCTGATAAGGAGA+AGG | - | chr2_1:7168427-7168446 | Msa0191550:CDS | 50.0% | |
| GCTGCTGCTGATAAGGAGAA+GGG | - | chr2_1:7168428-7168447 | Msa0191550:CDS | 50.0% | |
| ! | GGGTACTAAGTTTGCTCCTG+AGG | - | chr2_1:7168448-7168467 | Msa0191550:CDS | 50.0% |
| TACGGCTGCTGGAAACTCGT+GGG | + | chr2_1:7168067-7168086 | None:intergenic | 55.0% | |
| GAGCCTTACGGCTCTTCCTA+CGG | + | chr2_1:7168085-7168104 | None:intergenic | 55.0% | |
| GCGCCGTGAAATGAGCCTTA+CGG | + | chr2_1:7168097-7168116 | None:intergenic | 55.0% | |
| GTGGCGCGCTCATTAAGACA+CGG | + | chr2_1:7168133-7168152 | None:intergenic | 55.0% | |
| GTACTTGGATCGGAGATCGG+CGG | + | chr2_1:7168159-7168178 | None:intergenic | 55.0% | |
| GACGAAGTTCAGGTCGTTCG+TGG | - | chr2_1:7168209-7168228 | Msa0191550:CDS | 55.0% | |
| CTCAGGTTTACCGTCGCAAG+TGG | - | chr2_1:7168261-7168280 | Msa0191550:CDS | 55.0% | |
| CGAACGCATCACAAGGGAGA+AGG | - | chr2_1:7168295-7168314 | Msa0191550:CDS | 55.0% | |
| CTACGGCTGCTGGAAACTCG+TGG | + | chr2_1:7168068-7168087 | None:intergenic | 60.0% | |
| CACGAGTTTCCAGCAGCCGT+AGG | - | chr2_1:7168066-7168085 | Msa0191550:CDS | 60.0% | |
| CAGCCGTAGGAAGAGCCGTA+AGG | - | chr2_1:7168079-7168098 | Msa0191550:CDS | 60.0% | |
| AAGACACGGCGGACGCTTGA+TGG | + | chr2_1:7168119-7168138 | None:intergenic | 60.0% | |
| GCGCGCTCATTAAGACACGG+CGG | + | chr2_1:7168130-7168149 | None:intergenic | 60.0% | |
| ! | GGGTCGTGCTGCTGCTGATA+AGG | - | chr2_1:7168421-7168440 | Msa0191550:CDS | 60.0% |
| ACGGCTCTTCCTACGGCTGC+TGG | + | chr2_1:7168078-7168097 | None:intergenic | 65.0% | |
| GATCGGAGATCGGCGGAGAG+TGG | + | chr2_1:7168152-7168171 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 7168053 | 7168493 | 7168053 | ID=Msa0191550;Name=Msa0191550 |
| chr2_1 | mRNA | 7168053 | 7168493 | 7168053 | ID=Msa0191550-mRNA-1;Parent=Msa0191550;Name=Msa0191550-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|146 |
| chr2_1 | exon | 7168053 | 7168493 | 7168053 | ID=Msa0191550-mRNA-1:exon:3250;Parent=Msa0191550-mRNA-1 |
| chr2_1 | CDS | 7168053 | 7168493 | 7168053 | ID=Msa0191550-mRNA-1:cds;Parent=Msa0191550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
