Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1403300 | AES74362.2 | 75.893 | 112 | 5 | 1 | 17 | 106 | 43 | 154 | 2.31e-46 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1403300 | G7KPZ7 | 75.893 | 112 | 5 | 1 | 17 | 106 | 43 | 154 | 1.10e-46 | 163 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1403300 | Msa1403330 | 0.843710 | 1.185489e-58 | -8.615850e-47 |
| Msa0934360 | Msa1403300 | 0.830868 | 2.304766e-55 | -8.615850e-47 |
| Msa0934460 | Msa1403300 | 0.851359 | 9.346126e-61 | -8.615850e-47 |
| Msa0934520 | Msa1403300 | 0.965264 | 2.218118e-124 | -8.615850e-47 |
| Msa0934550 | Msa1403300 | 0.848305 | 6.672533e-60 | -8.615850e-47 |
| Msa0935010 | Msa1403300 | 0.868758 | 5.147853e-66 | -8.615850e-47 |
| Msa0935040 | Msa1403300 | 0.877432 | 6.315320e-69 | -8.615850e-47 |
| Msa0935060 | Msa1403300 | 0.800529 | 1.380864e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1403300 | MtrunA17_Chr4g0005421 | 75.728 | 103 | 3 | 1 | 26 | 106 | 1 | 103 | 1.04e-44 | 147 |
| Msa1403300 | MtrunA17_Chr6g0449611 | 73.786 | 103 | 5 | 1 | 26 | 106 | 1 | 103 | 2.43e-43 | 143 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1403300 | AT3G18880.2 | 52.632 | 95 | 23 | 1 | 26 | 98 | 1 | 95 | 8.70e-25 | 95.9 |
| Msa1403300 | AT3G18880.1 | 52.632 | 95 | 23 | 1 | 26 | 98 | 1 | 95 | 8.70e-25 | 95.9 |
| Msa1403300 | AT1G49400.1 | 60.241 | 83 | 11 | 1 | 26 | 86 | 1 | 83 | 3.86e-24 | 94.7 |
Find 77 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATACATATTCATCTGAATT+AGG | 0.118949 | tig0022951:-42783 | Msa1403300:CDS |
| ATACATATTCATCTGAATTA+GGG | 0.295624 | tig0022951:-42782 | Msa1403300:CDS |
| ATTCCCACATGTTAGCTATC+AGG | 0.295744 | tig0022951:-41474 | Msa1403300:CDS |
| TCCTCCACCTTGTGGTTCAT+TGG | 0.304495 | tig0022951:+41388 | None:intergenic |
| CATTGGAGGGGTAAATTTGT+AGG | 0.317183 | tig0022951:+41405 | None:intergenic |
| AATTGATTGAAGGCACCTTT+TGG | 0.358107 | tig0022951:+41431 | None:intergenic |
| TGGAAGTGCGCTTAATATAT+CGG | 0.362502 | tig0022951:+42640 | None:intergenic |
| CATCTGAATTAGGGTTTGTT+GGG | 0.369331 | tig0022951:-42773 | Msa1403300:CDS |
| TCATCTGAATTAGGGTTTGT+TGG | 0.386146 | tig0022951:-42774 | Msa1403300:CDS |
| GAATTAGGGTTTGTTGGGAT+TGG | 0.391008 | tig0022951:-42768 | Msa1403300:CDS |
| ACCGTATCAACAACCTCAAA+TGG | 0.393176 | tig0022951:-41251 | Msa1403300:CDS |
| CAACAACCTCAAATGGGTTA+TGG | 0.409765 | tig0022951:-41244 | Msa1403300:CDS |
| CCCATTTGAGGTTGTTGATA+CGG | 0.425520 | tig0022951:+41250 | None:intergenic |
| GAAAGATGTGCAACGGTGTA+AGG | 0.427384 | tig0022951:+41319 | None:intergenic |
| TCCACCTTGTGGTTCATTGG+AGG | 0.432303 | tig0022951:+41391 | None:intergenic |
| ATAATTCTTCGTCGTCAGTA+TGG | 0.436728 | tig0022951:+41495 | None:intergenic |
| TGTTGATACGGTGGAGGCGG+AGG | 0.437600 | tig0022951:+41262 | None:intergenic |
| TTCGAATAAGATGCAGAAAT+CGG | 0.439794 | tig0022951:-42706 | Msa1403300:CDS |
| CCACCTTGTGGTTCATTGGA+GGG | 0.445493 | tig0022951:+41392 | None:intergenic |
| CAAGGTGGAGGAACATGTTA+CGG | 0.446546 | tig0022951:-41377 | Msa1403300:CDS |
| TTTGAGCAAGCGTAAACATT+GGG | 0.449269 | tig0022951:-42286 | Msa1403300:CDS |
| AAATCATGTATATCATTCAT+TGG | 0.451659 | tig0022951:-41566 | Msa1403300:CDS |
| GGGTTATCCTTCTCCATTGG+TGG | 0.457042 | tig0022951:-41356 | Msa1403300:CDS |
| CCGGCTGGGTATTGCGGCTG+AGG | 0.458066 | tig0022951:+41295 | None:intergenic |
| TACGAAAATGCATGTGGAGC+CGG | 0.460130 | tig0022951:+41169 | None:intergenic |
| GGTTATCCTTCTCCATTGGT+GGG | 0.467815 | tig0022951:-41355 | Msa1403300:CDS |
| CACCTTGTGGTTCATTGGAG+GGG | 0.468827 | tig0022951:+41393 | None:intergenic |
| ATACATGATTTGTTTCCAAT+CGG | 0.471322 | tig0022951:+41578 | None:intergenic |
| GAGAAGATGAAGCAAGTAGT+AGG | 0.480871 | tig0022951:-42738 | Msa1403300:CDS |
| GATGAAGCAAGTAGTAGGAA+TGG | 0.481818 | tig0022951:-42733 | Msa1403300:CDS |
| ACGAAAATGCATGTGGAGCC+GGG | 0.491606 | tig0022951:+41170 | None:intergenic |
| AGGCGGAGGGTACACATATC+CGG | 0.494011 | tig0022951:+41276 | None:intergenic |
| AAGGTGGAGGAACATGTTAC+GGG | 0.507415 | tig0022951:-41376 | Msa1403300:CDS |
| TACGGGTTATCCTTCTCCAT+TGG | 0.507797 | tig0022951:-41359 | Msa1403300:CDS |
| TATCAGGTTAGAAAACCGTC+TGG | 0.510510 | tig0022951:-41458 | Msa1403300:CDS |
| GTTTAATGTGGCACGTTCCA+AGG | 0.522990 | tig0022951:-41928 | Msa1403300:CDS |
| GGTTGTTGATACGGTGGAGG+CGG | 0.528728 | tig0022951:+41259 | None:intergenic |
| TGAGGTTGTTGATACGGTGG+AGG | 0.529499 | tig0022951:+41256 | None:intergenic |
| CCGTATCAACAACCTCAAAT+GGG | 0.531396 | tig0022951:-41250 | Msa1403300:CDS |
| ACAGACAAGCTAACCAACCT+TGG | 0.531753 | tig0022951:+41911 | None:intergenic |
| GGGTAACCATAACCCATTTG+AGG | 0.535084 | tig0022951:+41238 | None:intergenic |
| AATGTGGCACGTTCCAAGGT+TGG | 0.535117 | tig0022951:-41924 | Msa1403300:intron |
| AAACCGTCTGGGAAACCAAA+AGG | 0.535420 | tig0022951:-41446 | Msa1403300:CDS |
| CAAATTTATGACGTAGATGT+AGG | 0.538933 | tig0022951:+42177 | None:intergenic |
| GGCAGAGAAAGTTGACCGAT+TGG | 0.540020 | tig0022951:-41593 | Msa1403300:CDS |
| CTTTGAGCAAGCGTAAACAT+TGG | 0.544408 | tig0022951:-42287 | Msa1403300:CDS |
| TAAGATGCAGAAATCGGTTG+TGG | 0.553827 | tig0022951:-42700 | Msa1403300:CDS |
| GGAGGGTACACATATCCGGC+TGG | 0.554832 | tig0022951:+41280 | None:intergenic |
| TACCCGCCACAAAACGCTTA+CGG | 0.556256 | tig0022951:-41196 | Msa1403300:CDS |
| CAATGTTTACGCTTGCTCAA+AGG | 0.562854 | tig0022951:+42288 | None:intergenic |
| ACATATCCGGCTGGGTATTG+CGG | 0.565140 | tig0022951:+41289 | None:intergenic |
| GCAAAAGTGGACCCCACCAA+TGG | 0.567160 | tig0022951:+41343 | None:intergenic |
| GTGGACCCCACCAATGGAGA+AGG | 0.569082 | tig0022951:+41349 | None:intergenic |
| TAACATGTTCCTCCACCTTG+TGG | 0.576939 | tig0022951:+41380 | None:intergenic |
| TCCAATGAACCACAAGGTGG+AGG | 0.577731 | tig0022951:-41389 | Msa1403300:CDS |
| GAAGCAAGTAGTAGGAATGG+TGG | 0.579237 | tig0022951:-42730 | Msa1403300:CDS |
| TTCTCAGACATGGTTGCAGA+GGG | 0.579464 | tig0022951:+42222 | None:intergenic |
| GTTATCCTTCTCCATTGGTG+GGG | 0.587944 | tig0022951:-41354 | Msa1403300:CDS |
| GTTGATACGGTGGAGGCGGA+GGG | 0.590112 | tig0022951:+41263 | None:intergenic |
| AATGCGAGCTCGAACTCTGT+AGG | 0.604238 | tig0022951:-42201 | Msa1403300:CDS |
| CTAACCTGATAGCTAACATG+TGG | 0.608115 | tig0022951:+41470 | None:intergenic |
| GTAGCGTCAAAATTCCACTC+AGG | 0.610415 | tig0022951:-41532 | Msa1403300:CDS |
| AGGATTAGAGATTTATAACA+TGG | 0.612341 | tig0022951:-41614 | Msa1403300:CDS |
| AACGGTGTAAGGTGCAAAAG+TGG | 0.613821 | tig0022951:+41330 | None:intergenic |
| GAGGGTACACATATCCGGCT+GGG | 0.615068 | tig0022951:+41281 | None:intergenic |
| TAGCGTCAAAATTCCACTCA+GGG | 0.619941 | tig0022951:-41531 | Msa1403300:CDS |
| TTGCAGGACGAAGTTTAATG+TGG | 0.622359 | tig0022951:-41940 | Msa1403300:intron |
| ATCAGGTTAGAAAACCGTCT+GGG | 0.623851 | tig0022951:-41457 | Msa1403300:CDS |
| ATTCTCAGACATGGTTGCAG+AGG | 0.626304 | tig0022951:+42221 | None:intergenic |
| ATTTGAGGTTGTTGATACGG+TGG | 0.632741 | tig0022951:+41253 | None:intergenic |
| TTCTGATACGAAAATGCATG+TGG | 0.634058 | tig0022951:+41163 | None:intergenic |
| CTGAGGAGAAAGATGTGCAA+CGG | 0.636582 | tig0022951:+41312 | None:intergenic |
| TCAGACATGGTTGCAGAGGG+AGG | 0.638104 | tig0022951:+42225 | None:intergenic |
| TCTTGAAGAAGCTCCCTGAG+TGG | 0.682869 | tig0022951:+41518 | None:intergenic |
| TAACCTGATAGCTAACATGT+GGG | 0.697114 | tig0022951:+41471 | None:intergenic |
| CCCTCCAATGAACCACAAGG+TGG | 0.698144 | tig0022951:-41392 | Msa1403300:CDS |
| TACCCCTCCAATGAACCACA+AGG | 0.719947 | tig0022951:-41395 | Msa1403300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAATCGTATAATATA+TGG | - | tig0022951:42075-42094 | Msa1403300:intron | 10.0% |
| !!! | AATGTTTTGATTATTTTTTC+TGG | - | tig0022951:41311-41330 | Msa1403300:CDS | 15.0% |
| !! | TAAGATTCTTAATATTTACA+GGG | + | tig0022951:43722-43741 | None:intergenic | 15.0% |
| !! | TAAATATTAAGAATCTTAGT+AGG | - | tig0022951:43724-43743 | Msa1403300:intron | 15.0% |
| !!! | ATCAAAATTAAAACTCTTTT+CGG | + | tig0022951:44223-44242 | None:intergenic | 15.0% |
| !! | AATCAATTGAAAAAACCAAA+AGG | + | tig0022951:41289-41308 | None:intergenic | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+CGG | + | tig0022951:41615-41634 | None:intergenic | 20.0% |
| !! | TGAATTGAACAATAAATTCA+AGG | + | tig0022951:41750-41769 | None:intergenic | 20.0% |
| !! | ATGTAAAGTGATTTATGTTT+GGG | + | tig0022951:41789-41808 | None:intergenic | 20.0% |
| !! | AATGTAAAGTGATTTATGTT+TGG | + | tig0022951:41790-41809 | None:intergenic | 20.0% |
| !!! | TGATTATGTATAATTGATTC+TGG | + | tig0022951:41827-41846 | None:intergenic | 20.0% |
| !!! | TGAATTGAATGTGTTTTTAT+TGG | + | tig0022951:42012-42031 | None:intergenic | 20.0% |
| !! | AAAAATCGTATAATATATGG+TGG | - | tig0022951:42078-42097 | Msa1403300:intron | 20.0% |
| !!! | TAATGAGTTGAATCAAAATA+TGG | - | tig0022951:42365-42384 | Msa1403300:intron | 20.0% |
| !! | AATACATATTCATCTGAATT+AGG | - | tig0022951:42575-42594 | Msa1403300:intron | 20.0% |
| !! | ATACATATTCATCTGAATTA+GGG | - | tig0022951:42576-42595 | Msa1403300:intron | 20.0% |
| !! | AATTATTCACAATACTAACT+CGG | + | tig0022951:42787-42806 | None:intergenic | 20.0% |
| !! | AGGTATTATAAAGTTAATCT+TGG | - | tig0022951:43208-43227 | Msa1403300:intron | 20.0% |
| !! | CTAAGATTCTTAATATTTAC+AGG | + | tig0022951:43723-43742 | None:intergenic | 20.0% |
| !! | AAATCATGTATATCATTCAT+TGG | - | tig0022951:43792-43811 | Msa1403300:intron | 20.0% |
| ! | TTAAAGTCAAGGTTATTAAG+AGG | + | tig0022951:41177-41196 | None:intergenic | 25.0% |
| !!! | GAATTTTGAGTTTAAAGTCA+AGG | + | tig0022951:41188-41207 | None:intergenic | 25.0% |
| ! | CATTCTTACATTGTAGATTA+TGG | - | tig0022951:41438-41457 | Msa1403300:CDS | 25.0% |
| !! | TACATTGTAGATTATGGTTT+TGG | - | tig0022951:41444-41463 | Msa1403300:CDS | 25.0% |
| ! | TGATTCATAGAAAACTATTC+AGG | + | tig0022951:41553-41572 | None:intergenic | 25.0% |
| !! | GAATAGTTTTCTATGAATCA+CGG | - | tig0022951:41553-41572 | Msa1403300:CDS | 25.0% |
| !! | AATTGATTCTGGCTAATAAA+AGG | + | tig0022951:41816-41835 | None:intergenic | 25.0% |
| ! | TTGTATGTGATTAAGTTTGT+AGG | - | tig0022951:42170-42189 | Msa1403300:intron | 25.0% |
| ! | TGTATGTGATTAAGTTTGTA+GGG | - | tig0022951:42171-42190 | Msa1403300:intron | 25.0% |
| !!! | GTTTCTCTTATAGTTTTTTG+AGG | + | tig0022951:42324-42343 | None:intergenic | 25.0% |
| ! | TGTTGTATTCTATTGTTCTT+TGG | - | tig0022951:42469-42488 | Msa1403300:intron | 25.0% |
| ! | TAACAACAATGGTAAAAGAT+AGG | + | tig0022951:42812-42831 | None:intergenic | 25.0% |
| ! | CAACTTCTAACTGAATATAA+TGG | - | tig0022951:43381-43400 | Msa1403300:intron | 25.0% |
| !! | TCTAACTGAATATAATGGAA+TGG | - | tig0022951:43386-43405 | Msa1403300:intron | 25.0% |
| ! | CTATAATTCATTAGCACAAA+TGG | + | tig0022951:43550-43569 | None:intergenic | 25.0% |
| ! | AGGATTAGAGATTTATAACA+TGG | - | tig0022951:43744-43763 | Msa1403300:intron | 25.0% |
| !!! | ATACATGATTTGTTTCCAAT+CGG | + | tig0022951:43783-43802 | None:intergenic | 25.0% |
| ! | TCATTCATTGGTAAAAACAT+CGG | - | tig0022951:43804-43823 | Msa1403300:intron | 25.0% |
| ! | TTGTAGGAAAAATTGATTGA+AGG | + | tig0022951:43940-43959 | None:intergenic | 25.0% |
| GGAAGAGATTAAATAAGATC+TGG | + | tig0022951:41210-41229 | None:intergenic | 30.0% | |
| ! | TACGATTACGATTTTCCTTT+TGG | - | tig0022951:41271-41290 | Msa1403300:CDS | 30.0% |
| TTGTTCGATTACGTCATAAA+AGG | - | tig0022951:41342-41361 | Msa1403300:CDS | 30.0% | |
| TGTTCGATTACGTCATAAAA+GGG | - | tig0022951:41343-41362 | Msa1403300:CDS | 30.0% | |
| TACAATGTAAGAATGCAGAA+AGG | + | tig0022951:41433-41452 | None:intergenic | 30.0% | |
| TTCAAGGCTAAAATCAACTA+TGG | + | tig0022951:41734-41753 | None:intergenic | 30.0% | |
| ATTTATGTTTGGGTGTGTAT+AGG | + | tig0022951:41779-41798 | None:intergenic | 30.0% | |
| TGCTGCATAACTAATTATAG+AGG | - | tig0022951:41869-41888 | Msa1403300:intron | 30.0% | |
| !! | TACATCTCTAGAATCAATTC+TGG | - | tig0022951:41939-41958 | Msa1403300:intron | 30.0% |
| GTATGTGATTAAGTTTGTAG+GGG | - | tig0022951:42172-42191 | Msa1403300:intron | 30.0% | |
| TTCGAATAAGATGCAGAAAT+CGG | - | tig0022951:42652-42671 | Msa1403300:CDS | 30.0% | |
| !! | TATATCGGTTGAACATTTTG+TGG | + | tig0022951:42706-42725 | None:intergenic | 30.0% |
| GAAAACAATCTTTGCAACAT+CGG | - | tig0022951:42758-42777 | Msa1403300:CDS | 30.0% | |
| ! | TTACCATTGTTGTTAAACAG+CGG | - | tig0022951:42817-42836 | Msa1403300:intron | 30.0% |
| !!! | TTTGAACAAACTGCTGTTTT+TGG | - | tig0022951:42947-42966 | Msa1403300:intron | 30.0% |
| CAAATTTATGACGTAGATGT+AGG | + | tig0022951:43184-43203 | None:intergenic | 30.0% | |
| TGGAATTGGAAATGAAGTTT+AGG | - | tig0022951:43272-43291 | Msa1403300:intron | 30.0% | |
| GCATATAATTGACACTTTGA+CGG | - | tig0022951:43333-43352 | Msa1403300:intron | 30.0% | |
| GTGCTAATGAATTATAGTGT+AGG | - | tig0022951:43553-43572 | Msa1403300:intron | 30.0% | |
| ! | TAACTGTAAACATTTTGTGG+CGG | + | tig0022951:44144-44163 | None:intergenic | 30.0% |
| AGTCAAGGTTATTAAGAGGA+AGG | + | tig0022951:41173-41192 | None:intergenic | 35.0% | |
| GTTCGATTACGTCATAAAAG+GGG | - | tig0022951:41344-41363 | Msa1403300:CDS | 35.0% | |
| ! | GGAAATCGAGAAGCTTTAAT+CGG | - | tig0022951:41365-41384 | Msa1403300:CDS | 35.0% |
| TCTCAAATTATTAGCGGTGT+CGG | + | tig0022951:41609-41628 | None:intergenic | 35.0% | |
| CAAAAACTACCTATGAAGCA+CGG | + | tig0022951:41707-41726 | None:intergenic | 35.0% | |
| ATCGTATAATATATGGTGGC+TGG | - | tig0022951:42082-42101 | Msa1403300:intron | 35.0% | |
| TTTGTAGGGGAAAATATGCT+AGG | - | tig0022951:42185-42204 | Msa1403300:intron | 35.0% | |
| ! | AGTAAGAAGAGTTGATCAGA+TGG | - | tig0022951:42263-42282 | Msa1403300:CDS | 35.0% |
| TTTATCCCACTAAGTGAGAT+CGG | + | tig0022951:42430-42449 | None:intergenic | 35.0% | |
| TCATCTGAATTAGGGTTTGT+TGG | - | tig0022951:42584-42603 | Msa1403300:intron | 35.0% | |
| ! | CATCTGAATTAGGGTTTGTT+GGG | - | tig0022951:42585-42604 | Msa1403300:intron | 35.0% |
| ! | TGGAAGTGCGCTTAATATAT+CGG | + | tig0022951:42721-42740 | None:intergenic | 35.0% |
| TTCATCATGAGCCATAAACT+TGG | + | tig0022951:42741-42760 | None:intergenic | 35.0% | |
| TTTGAGCAAGCGTAAACATT+GGG | - | tig0022951:43072-43091 | Msa1403300:intron | 35.0% | |
| ! | CTACGTCATAAATTTGCTCA+AGG | - | tig0022951:43188-43207 | Msa1403300:intron | 35.0% |
| ! | TTTACCCAGCTTTTAGATGT+TGG | - | tig0022951:43239-43258 | Msa1403300:intron | 35.0% |
| TACACCAACATCTAAAAGCT+GGG | + | tig0022951:43246-43265 | None:intergenic | 35.0% | |
| ATACACCAACATCTAAAAGC+TGG | + | tig0022951:43247-43266 | None:intergenic | 35.0% | |
| ! | AGCTTTTAGATGTTGGTGTA+TGG | - | tig0022951:43246-43265 | Msa1403300:intron | 35.0% |
| ! | TTTAGGTTTAGTTGAGTGAG+TGG | - | tig0022951:43289-43308 | Msa1403300:intron | 35.0% |
| ATAGTGTAGGATGATCACAA+TGG | - | tig0022951:43566-43585 | Msa1403300:intron | 35.0% | |
| ! | TTCAGGCTTTTACTTGTTTG+TGG | + | tig0022951:43679-43698 | None:intergenic | 35.0% |
| TCTACTGCATTTGAAAGTTC+AGG | + | tig0022951:43696-43715 | None:intergenic | 35.0% | |
| ATAATTCTTCGTCGTCAGTA+TGG | + | tig0022951:43866-43885 | None:intergenic | 35.0% | |
| TAACCTGATAGCTAACATGT+GGG | + | tig0022951:43890-43909 | None:intergenic | 35.0% | |
| !!! | AATTGATTGAAGGCACCTTT+TGG | + | tig0022951:43930-43949 | None:intergenic | 35.0% |
| ! | AACTGTAAACATTTTGTGGC+GGG | + | tig0022951:44143-44162 | None:intergenic | 35.0% |
| ! | GGGTAACTGTAAACATTTTG+TGG | + | tig0022951:44147-44166 | None:intergenic | 35.0% |
| TTCTGATACGAAAATGCATG+TGG | + | tig0022951:44198-44217 | None:intergenic | 35.0% | |
| GAAAACAGCTGAAAGAACGA+GGG | + | tig0022951:41231-41250 | None:intergenic | 40.0% | |
| AGAAAACAGCTGAAAGAACG+AGG | + | tig0022951:41232-41251 | None:intergenic | 40.0% | |
| ! | CGTGCTTCATAGGTAGTTTT+TGG | - | tig0022951:41705-41724 | Msa1403300:intron | 40.0% |
| ! | CCTGTGTTTCGTTTCACTTT+TGG | + | tig0022951:41970-41989 | None:intergenic | 40.0% |
| CCAAAAGTGAAACGAAACAC+AGG | - | tig0022951:41967-41986 | Msa1403300:intron | 40.0% | |
| AGTTTGAGCATGTAGAGAGA+AGG | - | tig0022951:42226-42245 | Msa1403300:CDS | 40.0% | |
| ! | AAGAAGAGTTGATCAGATGG+AGG | - | tig0022951:42266-42285 | Msa1403300:CDS | 40.0% |
| GATAGCTGTCAAATCACTAG+AGG | - | tig0022951:42288-42307 | Msa1403300:CDS | 40.0% | |
| TCACTTAGTGGGATAAAGCT+TGG | - | tig0022951:42433-42452 | Msa1403300:intron | 40.0% | |
| !! | GAATTAGGGTTTGTTGGGAT+TGG | - | tig0022951:42590-42609 | Msa1403300:intron | 40.0% |
| GAGAAGATGAAGCAAGTAGT+AGG | - | tig0022951:42620-42639 | Msa1403300:intron | 40.0% | |
| GATGAAGCAAGTAGTAGGAA+TGG | - | tig0022951:42625-42644 | Msa1403300:intron | 40.0% | |
| TAAGATGCAGAAATCGGTTG+TGG | - | tig0022951:42658-42677 | Msa1403300:CDS | 40.0% | |
| ! | ATCGGTTGAACATTTTGTGG+TGG | + | tig0022951:42703-42722 | None:intergenic | 40.0% |
| TAAGCGCACTTCCAAGTTTA+TGG | - | tig0022951:42727-42746 | Msa1403300:CDS | 40.0% | |
| ! | GACAGTGTCTTGTGCAATTT+TGG | - | tig0022951:42978-42997 | Msa1403300:intron | 40.0% |
| !! | GCTTTTGTGCTTGTCATTTC+AGG | - | tig0022951:43027-43046 | Msa1403300:intron | 40.0% |
| !! | CTTGTCATTTCAGGTTCGAT+TGG | - | tig0022951:43036-43055 | Msa1403300:intron | 40.0% |
| AGGTTCGATTGGATTCTTCT+AGG | - | tig0022951:43047-43066 | Msa1403300:intron | 40.0% | |
| CAATGTTTACGCTTGCTCAA+AGG | + | tig0022951:43073-43092 | None:intergenic | 40.0% | |
| CTTTGAGCAAGCGTAAACAT+TGG | - | tig0022951:43071-43090 | Msa1403300:intron | 40.0% | |
| TAGATGTTGGTGTATGGAAG+TGG | - | tig0022951:43252-43271 | Msa1403300:intron | 40.0% | |
| TTGGTGTATGGAAGTGGAAT+TGG | - | tig0022951:43258-43277 | Msa1403300:intron | 40.0% | |
| ! | GGAATGGTAATTTTCGTTGC+AGG | - | tig0022951:43402-43421 | Msa1403300:intron | 40.0% |
| TTGCAGGACGAAGTTTAATG+TGG | - | tig0022951:43418-43437 | Msa1403300:intron | 40.0% | |
| !! | TTGGTTAGCTTGTCTGTTGA+TGG | - | tig0022951:43453-43472 | Msa1403300:intron | 40.0% |
| !! | TGGTTAGCTTGTCTGTTGAT+GGG | - | tig0022951:43454-43473 | Msa1403300:intron | 40.0% |
| CTGCAACTTCAGATCACATA+AGG | - | tig0022951:43491-43510 | Msa1403300:intron | 40.0% | |
| TAGCGTCAAAATTCCACTCA+GGG | - | tig0022951:43827-43846 | Msa1403300:intron | 40.0% | |
| ATTCCCACATGTTAGCTATC+AGG | - | tig0022951:43884-43903 | Msa1403300:intron | 40.0% | |
| CTAACCTGATAGCTAACATG+TGG | + | tig0022951:43891-43910 | None:intergenic | 40.0% | |
| TATCAGGTTAGAAAACCGTC+TGG | - | tig0022951:43900-43919 | Msa1403300:intron | 40.0% | |
| ATCAGGTTAGAAAACCGTCT+GGG | - | tig0022951:43901-43920 | Msa1403300:intron | 40.0% | |
| CATTGGAGGGGTAAATTTGT+AGG | + | tig0022951:43956-43975 | None:intergenic | 40.0% | |
| ! | ATTTGAGGTTGTTGATACGG+TGG | + | tig0022951:44108-44127 | None:intergenic | 40.0% |
| ACCGTATCAACAACCTCAAA+TGG | - | tig0022951:44107-44126 | Msa1403300:intron | 40.0% | |
| ! | CCCATTTGAGGTTGTTGATA+CGG | + | tig0022951:44111-44130 | None:intergenic | 40.0% |
| CCGTATCAACAACCTCAAAT+GGG | - | tig0022951:44108-44127 | Msa1403300:intron | 40.0% | |
| !! | CAACAACCTCAAATGGGTTA+TGG | - | tig0022951:44114-44133 | Msa1403300:intron | 40.0% |
| TATTAAGAGGAAGGCTGAGG+TGG | + | tig0022951:41164-41183 | None:intergenic | 45.0% | |
| GGTTATTAAGAGGAAGGCTG+AGG | + | tig0022951:41167-41186 | None:intergenic | 45.0% | |
| TATGAAGCACGGATACTCCT+TGG | + | tig0022951:41696-41715 | None:intergenic | 45.0% | |
| !! | AAGGAGTATCCGTGCTTCAT+AGG | - | tig0022951:41695-41714 | Msa1403300:intron | 45.0% |
| CATGATTGATTGCTCTCGAG+TGG | + | tig0022951:41906-41925 | None:intergenic | 45.0% | |
| ! | GCTAGGAAATAGTCTTAGCC+AGG | - | tig0022951:42202-42221 | Msa1403300:CDS | 45.0% |
| TGTCAAATCACTAGAGGCAG+AGG | - | tig0022951:42294-42313 | Msa1403300:intron | 45.0% | |
| ATGTAGCCGATCTCACTTAG+TGG | - | tig0022951:42421-42440 | Msa1403300:intron | 45.0% | |
| TGTAGCCGATCTCACTTAGT+GGG | - | tig0022951:42422-42441 | Msa1403300:intron | 45.0% | |
| GAAGCAAGTAGTAGGAATGG+TGG | - | tig0022951:42628-42647 | Msa1403300:intron | 45.0% | |
| TTCTCAGACATGGTTGCAGA+GGG | + | tig0022951:43139-43158 | None:intergenic | 45.0% | |
| ATTCTCAGACATGGTTGCAG+AGG | + | tig0022951:43140-43159 | None:intergenic | 45.0% | |
| GTTTAATGTGGCACGTTCCA+AGG | - | tig0022951:43430-43449 | Msa1403300:intron | 45.0% | |
| ACAGACAAGCTAACCAACCT+TGG | + | tig0022951:43450-43469 | None:intergenic | 45.0% | |
| GTAGCGTCAAAATTCCACTC+AGG | - | tig0022951:43826-43845 | Msa1403300:intron | 45.0% | |
| AAACCGTCTGGGAAACCAAA+AGG | - | tig0022951:43912-43931 | Msa1403300:intron | 45.0% | |
| TAACATGTTCCTCCACCTTG+TGG | + | tig0022951:43981-44000 | None:intergenic | 45.0% | |
| CAAGGTGGAGGAACATGTTA+CGG | - | tig0022951:43981-44000 | Msa1403300:intron | 45.0% | |
| AAGGTGGAGGAACATGTTAC+GGG | - | tig0022951:43982-44001 | Msa1403300:intron | 45.0% | |
| ! | TACGGGTTATCCTTCTCCAT+TGG | - | tig0022951:43999-44018 | Msa1403300:intron | 45.0% |
| GGTTATCCTTCTCCATTGGT+GGG | - | tig0022951:44003-44022 | Msa1403300:intron | 45.0% | |
| GTTATCCTTCTCCATTGGTG+GGG | - | tig0022951:44004-44023 | Msa1403300:intron | 45.0% | |
| AACGGTGTAAGGTGCAAAAG+TGG | + | tig0022951:44031-44050 | None:intergenic | 45.0% | |
| GAAAGATGTGCAACGGTGTA+AGG | + | tig0022951:44042-44061 | None:intergenic | 45.0% | |
| CTGAGGAGAAAGATGTGCAA+CGG | + | tig0022951:44049-44068 | None:intergenic | 45.0% | |
| GGGTAACCATAACCCATTTG+AGG | + | tig0022951:44123-44142 | None:intergenic | 45.0% | |
| TACGAAAATGCATGTGGAGC+CGG | + | tig0022951:44192-44211 | None:intergenic | 45.0% | |
| GTCATGTCCGTGTCTGATAC+CGG | - | tig0022951:41658-41677 | Msa1403300:intron | 50.0% | |
| ! | TCCTTGGATTAGGCGTGTTC+CGG | + | tig0022951:41680-41699 | None:intergenic | 50.0% |
| GCACGGATACTCCTTGGATT+AGG | + | tig0022951:41690-41709 | None:intergenic | 50.0% | |
| CTCTACATGCTCAAACTGCC+TGG | + | tig0022951:42223-42242 | None:intergenic | 50.0% | |
| GCGCCGCTGTTTAACAACAA+TGG | + | tig0022951:42823-42842 | None:intergenic | 50.0% | |
| AATGCGAGCTCGAACTCTGT+AGG | - | tig0022951:43157-43176 | Msa1403300:intron | 50.0% | |
| AATGTGGCACGTTCCAAGGT+TGG | - | tig0022951:43434-43453 | Msa1403300:intron | 50.0% | |
| GGCAGAGAAAGTTGACCGAT+TGG | - | tig0022951:43765-43784 | Msa1403300:intron | 50.0% | |
| TCTTGAAGAAGCTCCCTGAG+TGG | + | tig0022951:43843-43862 | None:intergenic | 50.0% | |
| !!! | GCACCTTTTGGTTTCCCAGA+CGG | + | tig0022951:43918-43937 | None:intergenic | 50.0% |
| TACCCCTCCAATGAACCACA+AGG | - | tig0022951:43963-43982 | Msa1403300:intron | 50.0% | |
| CACCTTGTGGTTCATTGGAG+GGG | + | tig0022951:43968-43987 | None:intergenic | 50.0% | |
| CCACCTTGTGGTTCATTGGA+GGG | + | tig0022951:43969-43988 | None:intergenic | 50.0% | |
| TCCACCTTGTGGTTCATTGG+AGG | + | tig0022951:43970-43989 | None:intergenic | 50.0% | |
| TCCAATGAACCACAAGGTGG+AGG | - | tig0022951:43969-43988 | Msa1403300:intron | 50.0% | |
| TCCTCCACCTTGTGGTTCAT+TGG | + | tig0022951:43973-43992 | None:intergenic | 50.0% | |
| GGGTTATCCTTCTCCATTGG+TGG | - | tig0022951:44002-44021 | Msa1403300:intron | 50.0% | |
| ! | ACATATCCGGCTGGGTATTG+CGG | + | tig0022951:44072-44091 | None:intergenic | 50.0% |
| TGAGGTTGTTGATACGGTGG+AGG | + | tig0022951:44105-44124 | None:intergenic | 50.0% | |
| TACCCGCCACAAAACGCTTA+CGG | - | tig0022951:44162-44181 | Msa1403300:intron | 50.0% | |
| ! | TAGCCGTAAGCGTTTTGTGG+CGG | + | tig0022951:44168-44187 | None:intergenic | 50.0% |
| ACAAAACGCTTACGGCTACC+CGG | - | tig0022951:44170-44189 | Msa1403300:intron | 50.0% | |
| ACGAAAATGCATGTGGAGCC+GGG | + | tig0022951:44191-44210 | None:intergenic | 50.0% | |
| GAATCACGGACACGACGACA+CGG | - | tig0022951:41567-41586 | Msa1403300:CDS | 55.0% | |
| GCGTGTTCCGGTATCAGACA+CGG | + | tig0022951:41668-41687 | None:intergenic | 55.0% | |
| ACCGGAACACGCCTAATCCA+AGG | - | tig0022951:41676-41695 | Msa1403300:intron | 55.0% | |
| TCAGACATGGTTGCAGAGGG+AGG | + | tig0022951:43136-43155 | None:intergenic | 55.0% | |
| CGAGCTCGCATTCTCAGACA+TGG | + | tig0022951:43149-43168 | None:intergenic | 55.0% | |
| CCCTCCAATGAACCACAAGG+TGG | - | tig0022951:43966-43985 | Msa1403300:intron | 55.0% | |
| GCAAAAGTGGACCCCACCAA+TGG | + | tig0022951:44018-44037 | None:intergenic | 55.0% | |
| ! | GAGGGTACACATATCCGGCT+GGG | + | tig0022951:44080-44099 | None:intergenic | 55.0% |
| ! | AGGCGGAGGGTACACATATC+CGG | + | tig0022951:44085-44104 | None:intergenic | 55.0% |
| GGTTGTTGATACGGTGGAGG+CGG | + | tig0022951:44102-44121 | None:intergenic | 55.0% | |
| ! | AGCCGTAAGCGTTTTGTGGC+GGG | + | tig0022951:44167-44186 | None:intergenic | 55.0% |
| ! | GGGTAGCCGTAAGCGTTTTG+TGG | + | tig0022951:44171-44190 | None:intergenic | 55.0% |
| GTGGACCCCACCAATGGAGA+AGG | + | tig0022951:44012-44031 | None:intergenic | 60.0% | |
| ! | GGAGGGTACACATATCCGGC+TGG | + | tig0022951:44081-44100 | None:intergenic | 60.0% |
| GTTGATACGGTGGAGGCGGA+GGG | + | tig0022951:44098-44117 | None:intergenic | 60.0% | |
| TGTTGATACGGTGGAGGCGG+AGG | + | tig0022951:44099-44118 | None:intergenic | 60.0% | |
| CCTCAGCCGCAATACCCAGC+CGG | - | tig0022951:44063-44082 | Msa1403300:intron | 65.0% | |
| ! | CCGGCTGGGTATTGCGGCTG+AGG | + | tig0022951:44066-44085 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022951 | gene | 41135 | 44245 | 41135 | ID=Msa1403300;Name=Msa1403300 |
| tig0022951 | mRNA | 41135 | 44245 | 41135 | ID=Msa1403300-mRNA-1;Parent=Msa1403300;Name=Msa1403300-mRNA-1;_AED=0.27;_eAED=0.34;_QI=0|0|0|0.8|0|0.4|5|0|281 |
| tig0022951 | exon | 44240 | 44245 | 44240 | ID=Msa1403300-mRNA-1:exon:19226;Parent=Msa1403300-mRNA-1 |
| tig0022951 | exon | 42639 | 42823 | 42639 | ID=Msa1403300-mRNA-1:exon:19225;Parent=Msa1403300-mRNA-1 |
| tig0022951 | exon | 42189 | 42311 | 42189 | ID=Msa1403300-mRNA-1:exon:19224;Parent=Msa1403300-mRNA-1 |
| tig0022951 | exon | 41925 | 41956 | 41925 | ID=Msa1403300-mRNA-1:exon:19223;Parent=Msa1403300-mRNA-1 |
| tig0022951 | exon | 41135 | 41634 | 41135 | ID=Msa1403300-mRNA-1:exon:19222;Parent=Msa1403300-mRNA-1 |
| tig0022951 | CDS | 44240 | 44245 | 44240 | ID=Msa1403300-mRNA-1:cds;Parent=Msa1403300-mRNA-1 |
| tig0022951 | CDS | 42639 | 42823 | 42639 | ID=Msa1403300-mRNA-1:cds;Parent=Msa1403300-mRNA-1 |
| tig0022951 | CDS | 42189 | 42311 | 42189 | ID=Msa1403300-mRNA-1:cds;Parent=Msa1403300-mRNA-1 |
| tig0022951 | CDS | 41925 | 41956 | 41925 | ID=Msa1403300-mRNA-1:cds;Parent=Msa1403300-mRNA-1 |
| tig0022951 | CDS | 41135 | 41634 | 41135 | ID=Msa1403300-mRNA-1:cds;Parent=Msa1403300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
