Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1406500 | XP_024636611.1 | 81.696 | 519 | 46 | 5 | 1 | 512 | 1 | 477 | 0.0 | 810 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1406500 | sp|Q9C9C0|SPPA1_ARATH | 41.144 | 542 | 211 | 11 | 63 | 501 | 78 | 614 | 1.53e-112 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1406500 | G7JFI3 | 77.930 | 512 | 52 | 4 | 1 | 512 | 13 | 463 | 0.0 | 759 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1406500 | Msa1416560 | 0.831745 | 1.402049e-55 | -8.615850e-47 |
| Msa1334130 | Msa1406500 | 0.828594 | 8.242072e-55 | -8.615850e-47 |
| Msa1334160 | Msa1406500 | 0.830956 | 2.192610e-55 | -8.615850e-47 |
| Msa1337970 | Msa1406500 | 0.828735 | 7.620775e-55 | -8.615850e-47 |
| Msa1222440 | Msa1406500 | 0.847944 | 8.391991e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1406500 | MtrunA17_Chr4g0073611 | 88.000 | 275 | 33 | 0 | 144 | 418 | 1 | 275 | 1.85e-178 | 503 |
| Msa1406500 | MtrunA17_Chr4g0061881 | 48.339 | 602 | 190 | 14 | 13 | 501 | 3 | 596 | 8.94e-162 | 475 |
| Msa1406500 | MtrunA17_Chr2g0307851 | 46.629 | 534 | 174 | 11 | 72 | 501 | 82 | 608 | 5.28e-140 | 419 |
| Msa1406500 | MtrunA17_Chr5g0408331 | 46.407 | 334 | 118 | 10 | 74 | 402 | 35 | 312 | 1.35e-78 | 249 |
| Msa1406500 | MtrunA17_Chr5g0437391 | 43.558 | 326 | 106 | 12 | 189 | 465 | 4 | 300 | 9.07e-61 | 203 |
| Msa1406500 | MtrunA17_Chr4g0061841 | 41.367 | 278 | 101 | 9 | 145 | 415 | 9 | 231 | 2.44e-52 | 178 |
| Msa1406500 | MtrunA17_Chr4g0069071 | 34.125 | 337 | 181 | 9 | 126 | 429 | 5 | 333 | 6.59e-43 | 157 |
| Msa1406500 | MtrunA17_Chr4g0073621 | 91.667 | 72 | 6 | 0 | 441 | 512 | 6 | 77 | 7.91e-41 | 141 |
| Msa1406500 | MtrunA17_Chr4g0076561 | 52.083 | 144 | 59 | 4 | 303 | 437 | 2 | 144 | 6.05e-33 | 124 |
| Msa1406500 | MtrunA17_Chr8g0344851 | 47.619 | 168 | 29 | 4 | 384 | 494 | 1 | 166 | 7.40e-33 | 124 |
| Msa1406500 | MtrunA17_Chr4g0076571 | 62.366 | 93 | 34 | 1 | 140 | 232 | 1 | 92 | 5.44e-32 | 118 |
| Msa1406500 | MtrunA17_Chr4g0064001 | 49.296 | 142 | 22 | 4 | 408 | 501 | 3 | 142 | 1.21e-25 | 105 |
| Msa1406500 | MtrunA17_Chr5g0437441 | 54.286 | 105 | 41 | 3 | 98 | 198 | 1 | 102 | 4.78e-25 | 99.8 |
| Msa1406500 | MtrunA17_Chr8g0344831 | 50.435 | 115 | 53 | 2 | 297 | 408 | 8 | 121 | 8.18e-24 | 96.7 |
| Msa1406500 | MtrunA17_Chr5g0437451 | 41.436 | 181 | 69 | 7 | 313 | 490 | 2 | 148 | 2.01e-23 | 96.7 |
| Msa1406500 | MtrunA17_Chr5g0408341 | 66.667 | 60 | 18 | 1 | 441 | 500 | 1 | 58 | 2.07e-18 | 82.0 |
| Msa1406500 | MtrunA17_Chr8g0344821 | 74.074 | 54 | 12 | 1 | 441 | 494 | 56 | 107 | 2.36e-17 | 78.2 |
| Msa1406500 | MtrunA17_Chr4g0061831 | 71.698 | 53 | 13 | 1 | 441 | 493 | 66 | 116 | 1.04e-15 | 73.6 |
| Msa1406500 | MtrunA17_Chr4g0063991 | 59.701 | 67 | 23 | 2 | 313 | 376 | 2 | 67 | 9.88e-15 | 69.7 |
| Msa1406500 | MtrunA17_Chr4g0063981 | 71.429 | 35 | 10 | 0 | 174 | 208 | 1 | 35 | 3.86e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1406500 | AT1G73990.1 | 41.144 | 542 | 211 | 11 | 63 | 501 | 78 | 614 | 1.56e-113 | 352 |
| Msa1406500 | AT1G73990.2 | 45.662 | 438 | 189 | 8 | 68 | 461 | 84 | 516 | 3.46e-111 | 343 |
Find 131 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCAACCAGTGTTCAAATTT+TGG | 0.096910 | tig0023210:+52093 | None:intergenic |
| TTGGAAAAGGATCTATTATT+TGG | 0.128131 | tig0023210:+51267 | None:intergenic |
| CGAGACAACAACTGCATTAA+TGG | 0.184426 | tig0023210:-51853 | Msa1406500:CDS |
| TTTGCTTATGTCCCTGAAAT+TGG | 0.196065 | tig0023210:-52011 | Msa1406500:CDS |
| TCACAAATTTAGTTATATTA+AGG | 0.196805 | tig0023210:-51904 | Msa1406500:CDS |
| TGGATAATATTTACTCAAAT+TGG | 0.197209 | tig0023210:-51833 | Msa1406500:CDS |
| AATTTGGAAGGTAAGATTTC+TGG | 0.242205 | tig0023210:-52404 | Msa1406500:CDS |
| TGGAACCTCTTCCATTGATT+TGG | 0.252339 | tig0023210:+51248 | None:intergenic |
| TTTGTTGAGGTTCATTTGTA+TGG | 0.259020 | tig0023210:-51936 | Msa1406500:CDS |
| AGGAGGAATTTAATCTTCTT+TGG | 0.260660 | tig0023210:-51050 | Msa1406500:CDS |
| CTCGGTTTGGTTGATGCTAT+TGG | 0.265550 | tig0023210:-51183 | Msa1406500:CDS |
| TCATAACGGATTTGCTATAT+AGG | 0.286656 | tig0023210:-51701 | Msa1406500:CDS |
| CAGTTCAGGAGGTAAATTTC+GGG | 0.292898 | tig0023210:-51445 | Msa1406500:CDS |
| CCAAGCCTTTCCTTCAAGTT+GGG | 0.324316 | tig0023210:+51666 | None:intergenic |
| CACAAATTTAGTTATATTAA+GGG | 0.331412 | tig0023210:-51903 | Msa1406500:CDS |
| TTAGTGCATCCTAATCTTCT+TGG | 0.333889 | tig0023210:-51015 | Msa1406500:CDS |
| ACAGTTCAGGAGGTAAATTT+CGG | 0.345303 | tig0023210:-51446 | Msa1406500:CDS |
| GCAGAAAATCTTACCTTAGT+TGG | 0.347938 | tig0023210:-51300 | Msa1406500:CDS |
| ATCTTAAATTTCAGAAAATC+AGG | 0.347978 | tig0023210:-52044 | Msa1406500:CDS |
| CCAAAATTTGAACACTGGTT+GGG | 0.355126 | tig0023210:-52093 | Msa1406500:CDS |
| ATAGCCATCATTCGAGTCTC+AGG | 0.356408 | tig0023210:-51555 | Msa1406500:CDS |
| CACAGGGGAAGGGGAAGGTT+TGG | 0.359665 | tig0023210:-51227 | Msa1406500:CDS |
| CATAACGGATTTGCTATATA+GGG | 0.361873 | tig0023210:-51700 | Msa1406500:CDS |
| AAGGCCAATATACCTCAAAA+TGG | 0.388556 | tig0023210:-51126 | Msa1406500:CDS |
| AGTTTATTGAGAATATATAT+AGG | 0.390012 | tig0023210:-51512 | Msa1406500:CDS |
| CCCAAGCCTTTCCTTCAAGT+TGG | 0.390394 | tig0023210:+51665 | None:intergenic |
| GTTTATTGAGAATATATATA+GGG | 0.396139 | tig0023210:-51511 | Msa1406500:CDS |
| CTCTGGCTTGAAGAAGTATC+TGG | 0.400164 | tig0023210:-52306 | Msa1406500:CDS |
| CTCTTCCATTGATTTGGAAA+AGG | 0.400283 | tig0023210:+51254 | None:intergenic |
| ATTGTCCGAATTGACAGTTC+AGG | 0.411636 | tig0023210:-51459 | Msa1406500:CDS |
| TTGGTTAACTTTGTAACTAA+AGG | 0.412796 | tig0023210:-51759 | Msa1406500:CDS |
| CCAACTTGAAGGAAAGGCTT+GGG | 0.422842 | tig0023210:-51665 | Msa1406500:CDS |
| TGGATAATCAACATCCTTGC+CGG | 0.434812 | tig0023210:+52355 | None:intergenic |
| TCCAAAATTTGAACACTGGT+TGG | 0.435258 | tig0023210:-52094 | Msa1406500:CDS |
| GCTCGTGCGGTAGAATTTGA+GGG | 0.437753 | tig0023210:+52499 | None:intergenic |
| CTCCCAGGGTAAAGTTGGAC+AGG | 0.443050 | tig0023210:+51074 | None:intergenic |
| TACCTCCTGAACTGTCAATT+CGG | 0.443292 | tig0023210:+51454 | None:intergenic |
| GTTCTTCAAATCAATTTGTC+CGG | 0.445006 | tig0023210:-52230 | Msa1406500:CDS |
| TCCTCCTCCCAGGGTAAAGT+TGG | 0.446367 | tig0023210:+51069 | None:intergenic |
| GAATTTGAGGGGTTTATGAA+TGG | 0.450237 | tig0023210:+52511 | None:intergenic |
| TACAAATGAACCTCAACAAA+AGG | 0.456509 | tig0023210:+51939 | None:intergenic |
| CAAAATTTGAACACTGGTTG+GGG | 0.459205 | tig0023210:-52092 | Msa1406500:CDS |
| GGAAGAGGTTCCACAGGGGA+AGG | 0.463372 | tig0023210:-51238 | Msa1406500:CDS |
| AAGAGGTTCCACAGGGGAAG+GGG | 0.467563 | tig0023210:-51236 | Msa1406500:CDS |
| CAGATCATCAACAGAATTCA+AGG | 0.474665 | tig0023210:-51487 | Msa1406500:CDS |
| ATTAAATTCCTCCTCCTCCC+AGG | 0.476401 | tig0023210:+51059 | None:intergenic |
| AGGGGTTTATGAATGGTAGC+AGG | 0.476548 | tig0023210:+52518 | None:intergenic |
| AAGAGAAAATGTCGAAAACT+TGG | 0.476552 | tig0023210:-51778 | Msa1406500:CDS |
| AAGGATGTTGATTATCCAAC+CGG | 0.477750 | tig0023210:-52350 | Msa1406500:CDS |
| AAGTTGTGACCAAGAAGATT+AGG | 0.481987 | tig0023210:+51006 | None:intergenic |
| AACTTTACCCTGGGAGGAGG+AGG | 0.483757 | tig0023210:-51067 | Msa1406500:CDS |
| GCAGGATACTACTTAGCAAC+GGG | 0.485513 | tig0023210:-51339 | Msa1406500:CDS |
| CAAAGAAGAGGGTTTCATAA+CGG | 0.489037 | tig0023210:-51715 | Msa1406500:CDS |
| TACTACTTAGCAACGGGAGC+AGG | 0.490304 | tig0023210:-51333 | Msa1406500:CDS |
| GGACGCAACATCTCTCGGTT+TGG | 0.491111 | tig0023210:-51196 | Msa1406500:CDS |
| TTCGGGCATCTAATTATATG+TGG | 0.492637 | tig0023210:-51428 | Msa1406500:CDS |
| TCTGATGTGGCAACAAGTGC+AGG | 0.494828 | tig0023210:-51357 | Msa1406500:CDS |
| AACAAATTATCGCAAATTTG+AGG | 0.494896 | tig0023210:+52161 | None:intergenic |
| AATCGACTGTTGGAATATCA+AGG | 0.496160 | tig0023210:-51593 | Msa1406500:CDS |
| TGATATTATCCCCAACTTGA+AGG | 0.496185 | tig0023210:-51676 | Msa1406500:CDS |
| TGTTACTGCATTATTCGTAA+AGG | 0.500089 | tig0023210:-50984 | None:intergenic |
| TATTGCTATAGCAAAATTGA+AGG | 0.500409 | tig0023210:-51145 | Msa1406500:CDS |
| TACCTCTGAATCGGTGTGTA+GGG | 0.501142 | tig0023210:+52193 | None:intergenic |
| CGCGTTAGTAAATCGACTGT+TGG | 0.501184 | tig0023210:-51603 | Msa1406500:CDS |
| ATCAATGGAAGAGGTTCCAC+AGG | 0.501640 | tig0023210:-51244 | Msa1406500:CDS |
| GAAGATTAGGATGCACTAAC+GGG | 0.503183 | tig0023210:+51019 | None:intergenic |
| TAGAGATAATACCTCTGAAT+CGG | 0.505324 | tig0023210:+52184 | None:intergenic |
| CCCAACTTGAAGGAAAGGCT+TGG | 0.506916 | tig0023210:-51666 | Msa1406500:CDS |
| TTTGATTTCATTCCACACTC+TGG | 0.514952 | tig0023210:-52323 | Msa1406500:CDS |
| GAAGAGGTTCCACAGGGGAA+GGG | 0.517831 | tig0023210:-51237 | Msa1406500:CDS |
| TTATCCCCAACTTGAAGGAA+AGG | 0.520815 | tig0023210:-51671 | Msa1406500:CDS |
| TAACTAAATTTGTGAACAGT+GGG | 0.524393 | tig0023210:+51912 | None:intergenic |
| TGGAATGAAATCAAAATCTC+CGG | 0.524479 | tig0023210:+52331 | None:intergenic |
| CAAGCCTTTCCTTCAAGTTG+GGG | 0.529315 | tig0023210:+51667 | None:intergenic |
| AACATCCTTGCCGGAAGAAG+AGG | 0.530642 | tig0023210:+52364 | None:intergenic |
| GGTTCCACAGGGGAAGGGGA+AGG | 0.533194 | tig0023210:-51232 | Msa1406500:CDS |
| ATCAGATATTGAAGCAATGA+CGG | 0.536024 | tig0023210:+51374 | None:intergenic |
| GGTTTGGTTGATGCTATTGG+TGG | 0.540573 | tig0023210:-51180 | Msa1406500:CDS |
| TATTCTTTGAAAGAAACAAA+AGG | 0.543012 | tig0023210:+51630 | None:intergenic |
| TGGACTAAAAGAACCAACTA+AGG | 0.544447 | tig0023210:+51287 | None:intergenic |
| AGAAGATTAGGATGCACTAA+CGG | 0.547063 | tig0023210:+51018 | None:intergenic |
| AATATCCAAAATTTGAACAC+TGG | 0.547788 | tig0023210:-52098 | Msa1406500:CDS |
| TCAGATATTGAAGCAATGAC+GGG | 0.551209 | tig0023210:+51375 | None:intergenic |
| ATACCTCTGAATCGGTGTGT+AGG | 0.552557 | tig0023210:+52192 | None:intergenic |
| CACCCTGTCCAACTTTACCC+TGG | 0.555639 | tig0023210:-51077 | Msa1406500:CDS |
| GTTTGGTTGATGCTATTGGT+GGG | 0.556402 | tig0023210:-51179 | Msa1406500:CDS |
| GGTAAGGACGCAACATCTCT+CGG | 0.557645 | tig0023210:-51201 | Msa1406500:CDS |
| CACCCTACACACCGATTCAG+AGG | 0.558538 | tig0023210:-52195 | Msa1406500:CDS |
| TGAATCGGTGTGTAGGGTGT+CGG | 0.562552 | tig0023210:+52199 | None:intergenic |
| TCCAACTTTACCCTGGGAGG+AGG | 0.565785 | tig0023210:-51070 | Msa1406500:CDS |
| GATGTAGTATCTTCTTCCAC+CGG | 0.568021 | tig0023210:-51807 | Msa1406500:CDS |
| AGTAGAAGAACTCAAAGAAG+AGG | 0.568425 | tig0023210:-51727 | Msa1406500:CDS |
| GTCACAGCGTTCATCTCTCA+TGG | 0.568866 | tig0023210:-52558 | Msa1406500:CDS |
| AGACCCTGAGACTCGAATGA+TGG | 0.571972 | tig0023210:+51551 | None:intergenic |
| AATGAACCTCAACAAAAGGA+TGG | 0.572223 | tig0023210:+51943 | None:intergenic |
| CTCGTGCGGTAGAATTTGAG+GGG | 0.580670 | tig0023210:+52500 | None:intergenic |
| CTGCTAGCACTCCCCTCAGA+GGG | 0.583729 | tig0023210:-52269 | Msa1406500:CDS |
| ACCCTGTCCAACTTTACCCT+GGG | 0.586996 | tig0023210:-51076 | Msa1406500:CDS |
| AGCAGGTGATATACAGCGAT+CGG | 0.592109 | tig0023210:+52535 | None:intergenic |
| GTAGAAGAACTCAAAGAAGA+GGG | 0.593743 | tig0023210:-51726 | Msa1406500:CDS |
| TAGGGTGTCGGATATTATGC+CGG | 0.594782 | tig0023210:+52211 | None:intergenic |
| ATGAAATCAAAATCTCCGGT+TGG | 0.594805 | tig0023210:+52335 | None:intergenic |
| TACTTCTTCAAGCCAGAGTG+TGG | 0.594882 | tig0023210:+52311 | None:intergenic |
| TTAATGCAGTTGTTGTCTCG+TGG | 0.598388 | tig0023210:+51856 | None:intergenic |
| ATCGACTGTTGGAATATCAA+GGG | 0.598413 | tig0023210:-51592 | Msa1406500:CDS |
| CATTGCTTCAATATCTGATG+TGG | 0.601190 | tig0023210:-51370 | Msa1406500:CDS |
| TTAAATTCCTCCTCCTCCCA+GGG | 0.602774 | tig0023210:+51060 | None:intergenic |
| ATGAACCTCAACAAAAGGAT+GGG | 0.602807 | tig0023210:+51944 | None:intergenic |
| GGGGAAGGTTTGGACTGGTA+AGG | 0.604771 | tig0023210:-51217 | Msa1406500:CDS |
| TAGCCATCATTCGAGTCTCA+GGG | 0.606571 | tig0023210:-51554 | Msa1406500:CDS |
| CGATCAATAATAGAAGATGA+TGG | 0.608918 | tig0023210:+52461 | None:intergenic |
| TGCAGGATACTACTTAGCAA+CGG | 0.610387 | tig0023210:-51340 | Msa1406500:CDS |
| CGGAAGAAGAGGAAAATAAG+TGG | 0.613550 | tig0023210:+52375 | None:intergenic |
| ATAATAGAAGATGATGGTGG+CGG | 0.619265 | tig0023210:+52467 | None:intergenic |
| GTAAACTAGATGAAATTCGA+AGG | 0.619983 | tig0023210:-52070 | Msa1406500:CDS |
| GTCCGAATTGACAGTTCAGG+AGG | 0.622572 | tig0023210:-51456 | Msa1406500:CDS |
| AGGGTCTATCAGTAGTGCAA+CGG | 0.633641 | tig0023210:-51535 | Msa1406500:CDS |
| ATAACTAAATTTGTGAACAG+TGG | 0.633712 | tig0023210:+51911 | None:intergenic |
| CAACTTGAAGGAAAGGCTTG+GGG | 0.634279 | tig0023210:-51664 | Msa1406500:CDS |
| GGGAAGGGGAAGGTTTGGAC+TGG | 0.637451 | tig0023210:-51222 | Msa1406500:CDS |
| CAAACCTTCCCCTTCCCCTG+TGG | 0.650489 | tig0023210:+51228 | None:intergenic |
| TCCCAGGGTAAAGTTGGACA+GGG | 0.651519 | tig0023210:+51075 | None:intergenic |
| CAATATACCTCAAAATGGTG+AGG | 0.660377 | tig0023210:-51121 | Msa1406500:CDS |
| TCAATGGAAGAGGTTCCACA+GGG | 0.668896 | tig0023210:-51243 | Msa1406500:CDS |
| ATAAATACGAGGATCATACA+TGG | 0.669117 | tig0023210:+52133 | None:intergenic |
| TCTGCTAGCACTCCCCTCAG+AGG | 0.672433 | tig0023210:-52270 | Msa1406500:CDS |
| CTGTCCAACTTTACCCTGGG+AGG | 0.673818 | tig0023210:-51073 | Msa1406500:CDS |
| GCGGTGATATTGCGCTCGTG+CGG | 0.694021 | tig0023210:+52486 | None:intergenic |
| TCAATAATAGAAGATGATGG+TGG | 0.696702 | tig0023210:+52464 | None:intergenic |
| AGATATACAACATAAATACG+AGG | 0.759908 | tig0023210:+52122 | None:intergenic |
| CAATGGAAGAGGTTCCACAG+GGG | 0.794420 | tig0023210:-51242 | Msa1406500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTGAATTTTTTGTGAAT+CGG | + | tig0023210:51128-51147 | None:intergenic | 15.0% |
| !! | TCACAAATTTAGTTATATTA+AGG | - | tig0023210:51643-51662 | Msa1406500:CDS | 15.0% |
| !! | CACAAATTTAGTTATATTAA+GGG | - | tig0023210:51644-51663 | Msa1406500:CDS | 15.0% |
| !! | AGTTTATTGAGAATATATAT+AGG | - | tig0023210:52035-52054 | Msa1406500:CDS | 15.0% |
| !! | GTTTATTGAGAATATATATA+GGG | - | tig0023210:52036-52055 | Msa1406500:CDS | 15.0% |
| !!! | AAATTGAATTTTTTGTGAAT+CGG | + | tig0023210:51128-51147 | None:intergenic | 15.0% |
| !! | TCACAAATTTAGTTATATTA+AGG | - | tig0023210:51643-51662 | Msa1406500:CDS | 15.0% |
| !! | CACAAATTTAGTTATATTAA+GGG | - | tig0023210:51644-51663 | Msa1406500:CDS | 15.0% |
| !! | AGTTTATTGAGAATATATAT+AGG | - | tig0023210:52035-52054 | Msa1406500:CDS | 15.0% |
| !! | GTTTATTGAGAATATATATA+GGG | - | tig0023210:52036-52055 | Msa1406500:CDS | 15.0% |
| !! | GATTCACAAAAAATTCAATT+TGG | - | tig0023210:51127-51146 | Msa1406500:CDS | 20.0% |
| !! | ATCTTAAATTTCAGAAAATC+AGG | - | tig0023210:51503-51522 | Msa1406500:CDS | 20.0% |
| !! | TGGATAATATTTACTCAAAT+TGG | - | tig0023210:51714-51733 | Msa1406500:CDS | 20.0% |
| !!! | TATTCTTTGAAAGAAACAAA+AGG | + | tig0023210:51920-51939 | None:intergenic | 20.0% |
| !! | GATTCACAAAAAATTCAATT+TGG | - | tig0023210:51127-51146 | Msa1406500:CDS | 20.0% |
| !! | ATCTTAAATTTCAGAAAATC+AGG | - | tig0023210:51503-51522 | Msa1406500:CDS | 20.0% |
| !! | TGGATAATATTTACTCAAAT+TGG | - | tig0023210:51714-51733 | Msa1406500:CDS | 20.0% |
| !!! | TATTCTTTGAAAGAAACAAA+AGG | + | tig0023210:51920-51939 | None:intergenic | 20.0% |
| ! | CACAAAAAATTCAATTTGGA+AGG | - | tig0023210:51131-51150 | Msa1406500:CDS | 25.0% |
| ! | AACAAATTATCGCAAATTTG+AGG | + | tig0023210:51389-51408 | None:intergenic | 25.0% |
| ! | AGATATACAACATAAATACG+AGG | + | tig0023210:51428-51447 | None:intergenic | 25.0% |
| ! | AATATCCAAAATTTGAACAC+TGG | - | tig0023210:51449-51468 | Msa1406500:CDS | 25.0% |
| ! | TAACTAAATTTGTGAACAGT+GGG | + | tig0023210:51638-51657 | None:intergenic | 25.0% |
| ! | ATAACTAAATTTGTGAACAG+TGG | + | tig0023210:51639-51658 | None:intergenic | 25.0% |
| ! | TTGGTTAACTTTGTAACTAA+AGG | - | tig0023210:51788-51807 | Msa1406500:CDS | 25.0% |
| ! | TTGGAAAAGGATCTATTATT+TGG | + | tig0023210:52283-52302 | None:intergenic | 25.0% |
| ! | TATTGCTATAGCAAAATTGA+AGG | - | tig0023210:52402-52421 | Msa1406500:CDS | 25.0% |
| ! | CACAAAAAATTCAATTTGGA+AGG | - | tig0023210:51131-51150 | Msa1406500:CDS | 25.0% |
| ! | AACAAATTATCGCAAATTTG+AGG | + | tig0023210:51389-51408 | None:intergenic | 25.0% |
| ! | AGATATACAACATAAATACG+AGG | + | tig0023210:51428-51447 | None:intergenic | 25.0% |
| ! | AATATCCAAAATTTGAACAC+TGG | - | tig0023210:51449-51468 | Msa1406500:CDS | 25.0% |
| ! | TAACTAAATTTGTGAACAGT+GGG | + | tig0023210:51638-51657 | None:intergenic | 25.0% |
| ! | ATAACTAAATTTGTGAACAG+TGG | + | tig0023210:51639-51658 | None:intergenic | 25.0% |
| ! | TTGGTTAACTTTGTAACTAA+AGG | - | tig0023210:51788-51807 | Msa1406500:CDS | 25.0% |
| ! | TTGGAAAAGGATCTATTATT+TGG | + | tig0023210:52283-52302 | None:intergenic | 25.0% |
| ! | TATTGCTATAGCAAAATTGA+AGG | - | tig0023210:52402-52421 | Msa1406500:CDS | 25.0% |
| ! | TCAATAATAGAAGATGATGG+TGG | + | tig0023210:51086-51105 | None:intergenic | 30.0% |
| CGATCAATAATAGAAGATGA+TGG | + | tig0023210:51089-51108 | None:intergenic | 30.0% | |
| AATTTGGAAGGTAAGATTTC+TGG | - | tig0023210:51143-51162 | Msa1406500:CDS | 30.0% | |
| TGGAATGAAATCAAAATCTC+CGG | + | tig0023210:51219-51238 | None:intergenic | 30.0% | |
| GTTCTTCAAATCAATTTGTC+CGG | - | tig0023210:51317-51336 | Msa1406500:CDS | 30.0% | |
| TAGAGATAATACCTCTGAAT+CGG | + | tig0023210:51366-51385 | None:intergenic | 30.0% | |
| ATAAATACGAGGATCATACA+TGG | + | tig0023210:51417-51436 | None:intergenic | 30.0% | |
| GTAAACTAGATGAAATTCGA+AGG | - | tig0023210:51477-51496 | Msa1406500:CDS | 30.0% | |
| ! | ACTCTTTTACTCCAATTTCA+GGG | + | tig0023210:51550-51569 | None:intergenic | 30.0% |
| ! | TACTCTTTTACTCCAATTTC+AGG | + | tig0023210:51551-51570 | None:intergenic | 30.0% |
| TACAAATGAACCTCAACAAA+AGG | + | tig0023210:51611-51630 | None:intergenic | 30.0% | |
| TTTGTTGAGGTTCATTTGTA+TGG | - | tig0023210:51611-51630 | Msa1406500:CDS | 30.0% | |
| ! | GACATTTTCTCTTTTCTTTC+CGG | + | tig0023210:51762-51781 | None:intergenic | 30.0% |
| AAGAGAAAATGTCGAAAACT+TGG | - | tig0023210:51769-51788 | Msa1406500:CDS | 30.0% | |
| !! | TCATAACGGATTTGCTATAT+AGG | - | tig0023210:51846-51865 | Msa1406500:CDS | 30.0% |
| !! | CATAACGGATTTGCTATATA+GGG | - | tig0023210:51847-51866 | Msa1406500:CDS | 30.0% |
| ATCAGATATTGAAGCAATGA+CGG | + | tig0023210:52176-52195 | None:intergenic | 30.0% | |
| ! | TAGATCCTTTTCCAAATCAA+TGG | - | tig0023210:52288-52307 | Msa1406500:CDS | 30.0% |
| AGGAGGAATTTAATCTTCTT+TGG | - | tig0023210:52497-52516 | Msa1406500:CDS | 30.0% | |
| ! | TCAATAATAGAAGATGATGG+TGG | + | tig0023210:51086-51105 | None:intergenic | 30.0% |
| CGATCAATAATAGAAGATGA+TGG | + | tig0023210:51089-51108 | None:intergenic | 30.0% | |
| AATTTGGAAGGTAAGATTTC+TGG | - | tig0023210:51143-51162 | Msa1406500:CDS | 30.0% | |
| TGGAATGAAATCAAAATCTC+CGG | + | tig0023210:51219-51238 | None:intergenic | 30.0% | |
| GTTCTTCAAATCAATTTGTC+CGG | - | tig0023210:51317-51336 | Msa1406500:CDS | 30.0% | |
| TAGAGATAATACCTCTGAAT+CGG | + | tig0023210:51366-51385 | None:intergenic | 30.0% | |
| ATAAATACGAGGATCATACA+TGG | + | tig0023210:51417-51436 | None:intergenic | 30.0% | |
| GTAAACTAGATGAAATTCGA+AGG | - | tig0023210:51477-51496 | Msa1406500:CDS | 30.0% | |
| ! | ACTCTTTTACTCCAATTTCA+GGG | + | tig0023210:51550-51569 | None:intergenic | 30.0% |
| ! | TACTCTTTTACTCCAATTTC+AGG | + | tig0023210:51551-51570 | None:intergenic | 30.0% |
| TACAAATGAACCTCAACAAA+AGG | + | tig0023210:51611-51630 | None:intergenic | 30.0% | |
| TTTGTTGAGGTTCATTTGTA+TGG | - | tig0023210:51611-51630 | Msa1406500:CDS | 30.0% | |
| ! | GACATTTTCTCTTTTCTTTC+CGG | + | tig0023210:51762-51781 | None:intergenic | 30.0% |
| AAGAGAAAATGTCGAAAACT+TGG | - | tig0023210:51769-51788 | Msa1406500:CDS | 30.0% | |
| !! | TCATAACGGATTTGCTATAT+AGG | - | tig0023210:51846-51865 | Msa1406500:CDS | 30.0% |
| !! | CATAACGGATTTGCTATATA+GGG | - | tig0023210:51847-51866 | Msa1406500:CDS | 30.0% |
| ATCAGATATTGAAGCAATGA+CGG | + | tig0023210:52176-52195 | None:intergenic | 30.0% | |
| ! | TAGATCCTTTTCCAAATCAA+TGG | - | tig0023210:52288-52307 | Msa1406500:CDS | 30.0% |
| AGGAGGAATTTAATCTTCTT+TGG | - | tig0023210:52497-52516 | Msa1406500:CDS | 30.0% | |
| GAATTTGAGGGGTTTATGAA+TGG | + | tig0023210:51039-51058 | None:intergenic | 35.0% | |
| !! | ATAATAGAAGATGATGGTGG+CGG | + | tig0023210:51083-51102 | None:intergenic | 35.0% |
| !! | CACTTATTTTCCTCTTCTTC+CGG | - | tig0023210:51173-51192 | Msa1406500:CDS | 35.0% |
| ! | AAGGATGTTGATTATCCAAC+CGG | - | tig0023210:51197-51216 | Msa1406500:CDS | 35.0% |
| ATGAAATCAAAATCTCCGGT+TGG | + | tig0023210:51215-51234 | None:intergenic | 35.0% | |
| ! | TTTGATTTCATTCCACACTC+TGG | - | tig0023210:51224-51243 | Msa1406500:CDS | 35.0% |
| TCCAAAATTTGAACACTGGT+TGG | - | tig0023210:51453-51472 | Msa1406500:CDS | 35.0% | |
| ! | CCAAAATTTGAACACTGGTT+GGG | - | tig0023210:51454-51473 | Msa1406500:CDS | 35.0% |
| ! | CAAAATTTGAACACTGGTTG+GGG | - | tig0023210:51455-51474 | Msa1406500:CDS | 35.0% |
| TTTGCTTATGTCCCTGAAAT+TGG | - | tig0023210:51536-51555 | Msa1406500:CDS | 35.0% | |
| ATGAACCTCAACAAAAGGAT+GGG | + | tig0023210:51606-51625 | None:intergenic | 35.0% | |
| AATGAACCTCAACAAAAGGA+TGG | + | tig0023210:51607-51626 | None:intergenic | 35.0% | |
| ! | ATTTTCTCTTTTCTTTCCGG+TGG | + | tig0023210:51759-51778 | None:intergenic | 35.0% |
| AGTAGAAGAACTCAAAGAAG+AGG | - | tig0023210:51820-51839 | Msa1406500:CDS | 35.0% | |
| GTAGAAGAACTCAAAGAAGA+GGG | - | tig0023210:51821-51840 | Msa1406500:CDS | 35.0% | |
| CAAAGAAGAGGGTTTCATAA+CGG | - | tig0023210:51832-51851 | Msa1406500:CDS | 35.0% | |
| TGATATTATCCCCAACTTGA+AGG | - | tig0023210:51871-51890 | Msa1406500:CDS | 35.0% | |
| AATCGACTGTTGGAATATCA+AGG | - | tig0023210:51954-51973 | Msa1406500:CDS | 35.0% | |
| ATCGACTGTTGGAATATCAA+GGG | - | tig0023210:51955-51974 | Msa1406500:CDS | 35.0% | |
| CAGATCATCAACAGAATTCA+AGG | - | tig0023210:52060-52079 | Msa1406500:CDS | 35.0% | |
| ACAGTTCAGGAGGTAAATTT+CGG | - | tig0023210:52101-52120 | Msa1406500:CDS | 35.0% | |
| TTCGGGCATCTAATTATATG+TGG | - | tig0023210:52119-52138 | Msa1406500:CDS | 35.0% | |
| TCAGATATTGAAGCAATGAC+GGG | + | tig0023210:52175-52194 | None:intergenic | 35.0% | |
| CATTGCTTCAATATCTGATG+TGG | - | tig0023210:52177-52196 | Msa1406500:CDS | 35.0% | |
| GCAGAAAATCTTACCTTAGT+TGG | - | tig0023210:52247-52266 | Msa1406500:CDS | 35.0% | |
| TGGACTAAAAGAACCAACTA+AGG | + | tig0023210:52263-52282 | None:intergenic | 35.0% | |
| !! | CTCTTCCATTGATTTGGAAA+AGG | + | tig0023210:52296-52315 | None:intergenic | 35.0% |
| ! | CTTTTCCAAATCAATGGAAG+AGG | - | tig0023210:52294-52313 | Msa1406500:CDS | 35.0% |
| AAGGCCAATATACCTCAAAA+TGG | - | tig0023210:52421-52440 | Msa1406500:CDS | 35.0% | |
| !!! | CTCACCATTTTGAGGTATAT+TGG | + | tig0023210:52428-52447 | None:intergenic | 35.0% |
| CAATATACCTCAAAATGGTG+AGG | - | tig0023210:52426-52445 | Msa1406500:CDS | 35.0% | |
| AGAAGATTAGGATGCACTAA+CGG | + | tig0023210:52532-52551 | None:intergenic | 35.0% | |
| TTAGTGCATCCTAATCTTCT+TGG | - | tig0023210:52532-52551 | Msa1406500:CDS | 35.0% | |
| AAGTTGTGACCAAGAAGATT+AGG | + | tig0023210:52544-52563 | None:intergenic | 35.0% | |
| GAATTTGAGGGGTTTATGAA+TGG | + | tig0023210:51039-51058 | None:intergenic | 35.0% | |
| !! | ATAATAGAAGATGATGGTGG+CGG | + | tig0023210:51083-51102 | None:intergenic | 35.0% |
| !! | CACTTATTTTCCTCTTCTTC+CGG | - | tig0023210:51173-51192 | Msa1406500:CDS | 35.0% |
| ! | AAGGATGTTGATTATCCAAC+CGG | - | tig0023210:51197-51216 | Msa1406500:CDS | 35.0% |
| ATGAAATCAAAATCTCCGGT+TGG | + | tig0023210:51215-51234 | None:intergenic | 35.0% | |
| ! | TTTGATTTCATTCCACACTC+TGG | - | tig0023210:51224-51243 | Msa1406500:CDS | 35.0% |
| TCCAAAATTTGAACACTGGT+TGG | - | tig0023210:51453-51472 | Msa1406500:CDS | 35.0% | |
| ! | CCAAAATTTGAACACTGGTT+GGG | - | tig0023210:51454-51473 | Msa1406500:CDS | 35.0% |
| ! | CAAAATTTGAACACTGGTTG+GGG | - | tig0023210:51455-51474 | Msa1406500:CDS | 35.0% |
| TTTGCTTATGTCCCTGAAAT+TGG | - | tig0023210:51536-51555 | Msa1406500:CDS | 35.0% | |
| ATGAACCTCAACAAAAGGAT+GGG | + | tig0023210:51606-51625 | None:intergenic | 35.0% | |
| AATGAACCTCAACAAAAGGA+TGG | + | tig0023210:51607-51626 | None:intergenic | 35.0% | |
| ! | ATTTTCTCTTTTCTTTCCGG+TGG | + | tig0023210:51759-51778 | None:intergenic | 35.0% |
| AGTAGAAGAACTCAAAGAAG+AGG | - | tig0023210:51820-51839 | Msa1406500:CDS | 35.0% | |
| GTAGAAGAACTCAAAGAAGA+GGG | - | tig0023210:51821-51840 | Msa1406500:CDS | 35.0% | |
| CAAAGAAGAGGGTTTCATAA+CGG | - | tig0023210:51832-51851 | Msa1406500:CDS | 35.0% | |
| TGATATTATCCCCAACTTGA+AGG | - | tig0023210:51871-51890 | Msa1406500:CDS | 35.0% | |
| AATCGACTGTTGGAATATCA+AGG | - | tig0023210:51954-51973 | Msa1406500:CDS | 35.0% | |
| ATCGACTGTTGGAATATCAA+GGG | - | tig0023210:51955-51974 | Msa1406500:CDS | 35.0% | |
| CAGATCATCAACAGAATTCA+AGG | - | tig0023210:52060-52079 | Msa1406500:CDS | 35.0% | |
| ACAGTTCAGGAGGTAAATTT+CGG | - | tig0023210:52101-52120 | Msa1406500:CDS | 35.0% | |
| TTCGGGCATCTAATTATATG+TGG | - | tig0023210:52119-52138 | Msa1406500:CDS | 35.0% | |
| TCAGATATTGAAGCAATGAC+GGG | + | tig0023210:52175-52194 | None:intergenic | 35.0% | |
| CATTGCTTCAATATCTGATG+TGG | - | tig0023210:52177-52196 | Msa1406500:CDS | 35.0% | |
| GCAGAAAATCTTACCTTAGT+TGG | - | tig0023210:52247-52266 | Msa1406500:CDS | 35.0% | |
| TGGACTAAAAGAACCAACTA+AGG | + | tig0023210:52263-52282 | None:intergenic | 35.0% | |
| !! | CTCTTCCATTGATTTGGAAA+AGG | + | tig0023210:52296-52315 | None:intergenic | 35.0% |
| ! | CTTTTCCAAATCAATGGAAG+AGG | - | tig0023210:52294-52313 | Msa1406500:CDS | 35.0% |
| AAGGCCAATATACCTCAAAA+TGG | - | tig0023210:52421-52440 | Msa1406500:CDS | 35.0% | |
| !!! | CTCACCATTTTGAGGTATAT+TGG | + | tig0023210:52428-52447 | None:intergenic | 35.0% |
| CAATATACCTCAAAATGGTG+AGG | - | tig0023210:52426-52445 | Msa1406500:CDS | 35.0% | |
| AGAAGATTAGGATGCACTAA+CGG | + | tig0023210:52532-52551 | None:intergenic | 35.0% | |
| TTAGTGCATCCTAATCTTCT+TGG | - | tig0023210:52532-52551 | Msa1406500:CDS | 35.0% | |
| AAGTTGTGACCAAGAAGATT+AGG | + | tig0023210:52544-52563 | None:intergenic | 35.0% | |
| CGGAAGAAGAGGAAAATAAG+TGG | + | tig0023210:51175-51194 | None:intergenic | 40.0% | |
| TGGATAATCAACATCCTTGC+CGG | + | tig0023210:51195-51214 | None:intergenic | 40.0% | |
| ! | CCCAACCAGTGTTCAAATTT+TGG | + | tig0023210:51457-51476 | None:intergenic | 40.0% |
| ! | ATATGCCCATCCTTTTGTTG+AGG | - | tig0023210:51598-51617 | Msa1406500:CDS | 40.0% |
| TTAATGCAGTTGTTGTCTCG+TGG | + | tig0023210:51694-51713 | None:intergenic | 40.0% | |
| CGAGACAACAACTGCATTAA+TGG | - | tig0023210:51694-51713 | Msa1406500:CDS | 40.0% | |
| GATGTAGTATCTTCTTCCAC+CGG | - | tig0023210:51740-51759 | Msa1406500:CDS | 40.0% | |
| TTATCCCCAACTTGAAGGAA+AGG | - | tig0023210:51876-51895 | Msa1406500:CDS | 40.0% | |
| ATTGTCCGAATTGACAGTTC+AGG | - | tig0023210:52088-52107 | Msa1406500:CDS | 40.0% | |
| TACCTCCTGAACTGTCAATT+CGG | + | tig0023210:52096-52115 | None:intergenic | 40.0% | |
| CAGTTCAGGAGGTAAATTTC+GGG | - | tig0023210:52102-52121 | Msa1406500:CDS | 40.0% | |
| !!! | TGAAGCAATGACGGGTTTTT+CGG | + | tig0023210:52167-52186 | None:intergenic | 40.0% |
| TGCAGGATACTACTTAGCAA+CGG | - | tig0023210:52207-52226 | Msa1406500:CDS | 40.0% | |
| ! | TGGAACCTCTTCCATTGATT+TGG | + | tig0023210:52302-52321 | None:intergenic | 40.0% |
| ! | GTTTGGTTGATGCTATTGGT+GGG | - | tig0023210:52368-52387 | Msa1406500:CDS | 40.0% |
| ! | AGAGTAACCTCACCATTTTG+AGG | + | tig0023210:52436-52455 | None:intergenic | 40.0% |
| GAAGATTAGGATGCACTAAC+GGG | + | tig0023210:52531-52550 | None:intergenic | 40.0% | |
| CGGAAGAAGAGGAAAATAAG+TGG | + | tig0023210:51175-51194 | None:intergenic | 40.0% | |
| TGGATAATCAACATCCTTGC+CGG | + | tig0023210:51195-51214 | None:intergenic | 40.0% | |
| ! | CCCAACCAGTGTTCAAATTT+TGG | + | tig0023210:51457-51476 | None:intergenic | 40.0% |
| ! | ATATGCCCATCCTTTTGTTG+AGG | - | tig0023210:51598-51617 | Msa1406500:CDS | 40.0% |
| TTAATGCAGTTGTTGTCTCG+TGG | + | tig0023210:51694-51713 | None:intergenic | 40.0% | |
| CGAGACAACAACTGCATTAA+TGG | - | tig0023210:51694-51713 | Msa1406500:CDS | 40.0% | |
| GATGTAGTATCTTCTTCCAC+CGG | - | tig0023210:51740-51759 | Msa1406500:CDS | 40.0% | |
| TTATCCCCAACTTGAAGGAA+AGG | - | tig0023210:51876-51895 | Msa1406500:CDS | 40.0% | |
| ATTGTCCGAATTGACAGTTC+AGG | - | tig0023210:52088-52107 | Msa1406500:CDS | 40.0% | |
| TACCTCCTGAACTGTCAATT+CGG | + | tig0023210:52096-52115 | None:intergenic | 40.0% | |
| CAGTTCAGGAGGTAAATTTC+GGG | - | tig0023210:52102-52121 | Msa1406500:CDS | 40.0% | |
| !!! | TGAAGCAATGACGGGTTTTT+CGG | + | tig0023210:52167-52186 | None:intergenic | 40.0% |
| TGCAGGATACTACTTAGCAA+CGG | - | tig0023210:52207-52226 | Msa1406500:CDS | 40.0% | |
| ! | TGGAACCTCTTCCATTGATT+TGG | + | tig0023210:52302-52321 | None:intergenic | 40.0% |
| ! | GTTTGGTTGATGCTATTGGT+GGG | - | tig0023210:52368-52387 | Msa1406500:CDS | 40.0% |
| ! | AGAGTAACCTCACCATTTTG+AGG | + | tig0023210:52436-52455 | None:intergenic | 40.0% |
| GAAGATTAGGATGCACTAAC+GGG | + | tig0023210:52531-52550 | None:intergenic | 40.0% | |
| AGCAGGTGATATACAGCGAT+CGG | + | tig0023210:51015-51034 | None:intergenic | 45.0% | |
| AGGGGTTTATGAATGGTAGC+AGG | + | tig0023210:51032-51051 | None:intergenic | 45.0% | |
| ! | ATTTTCCTCTTCTTCCGGCA+AGG | - | tig0023210:51178-51197 | Msa1406500:CDS | 45.0% |
| TACTTCTTCAAGCCAGAGTG+TGG | + | tig0023210:51239-51258 | None:intergenic | 45.0% | |
| !! | CTCTGGCTTGAAGAAGTATC+TGG | - | tig0023210:51241-51260 | Msa1406500:CDS | 45.0% |
| ! | CGTTTTTAACACCCTCTGAG+GGG | + | tig0023210:51292-51311 | None:intergenic | 45.0% |
| !! | CCGTTTTTAACACCCTCTGA+GGG | + | tig0023210:51293-51312 | None:intergenic | 45.0% |
| !! | CCCTCAGAGGGTGTTAAAAA+CGG | - | tig0023210:51290-51309 | Msa1406500:CDS | 45.0% |
| !! | TAGGGTGTCGGATATTATGC+CGG | + | tig0023210:51339-51358 | None:intergenic | 45.0% |
| TACCTCTGAATCGGTGTGTA+GGG | + | tig0023210:51357-51376 | None:intergenic | 45.0% | |
| ATACCTCTGAATCGGTGTGT+AGG | + | tig0023210:51358-51377 | None:intergenic | 45.0% | |
| !! | CAAGCCTTTCCTTCAAGTTG+GGG | + | tig0023210:51883-51902 | None:intergenic | 45.0% |
| ! | CCAAGCCTTTCCTTCAAGTT+GGG | + | tig0023210:51884-51903 | None:intergenic | 45.0% |
| CCAACTTGAAGGAAAGGCTT+GGG | - | tig0023210:51882-51901 | Msa1406500:CDS | 45.0% | |
| CAACTTGAAGGAAAGGCTTG+GGG | - | tig0023210:51883-51902 | Msa1406500:CDS | 45.0% | |
| CGCGTTAGTAAATCGACTGT+TGG | - | tig0023210:51944-51963 | Msa1406500:CDS | 45.0% | |
| ATAGCCATCATTCGAGTCTC+AGG | - | tig0023210:51992-52011 | Msa1406500:CDS | 45.0% | |
| TAGCCATCATTCGAGTCTCA+GGG | - | tig0023210:51993-52012 | Msa1406500:CDS | 45.0% | |
| AGGGTCTATCAGTAGTGCAA+CGG | - | tig0023210:52012-52031 | Msa1406500:CDS | 45.0% | |
| GCAGGATACTACTTAGCAAC+GGG | - | tig0023210:52208-52227 | Msa1406500:CDS | 45.0% | |
| ATCAATGGAAGAGGTTCCAC+AGG | - | tig0023210:52303-52322 | Msa1406500:CDS | 45.0% | |
| TCAATGGAAGAGGTTCCACA+GGG | - | tig0023210:52304-52323 | Msa1406500:CDS | 45.0% | |
| !! | CTCGGTTTGGTTGATGCTAT+TGG | - | tig0023210:52364-52383 | Msa1406500:CDS | 45.0% |
| ! | GGTTTGGTTGATGCTATTGG+TGG | - | tig0023210:52367-52386 | Msa1406500:CDS | 45.0% |
| TTAAATTCCTCCTCCTCCCA+GGG | + | tig0023210:52490-52509 | None:intergenic | 45.0% | |
| ATTAAATTCCTCCTCCTCCC+AGG | + | tig0023210:52491-52510 | None:intergenic | 45.0% | |
| AGCAGGTGATATACAGCGAT+CGG | + | tig0023210:51015-51034 | None:intergenic | 45.0% | |
| AGGGGTTTATGAATGGTAGC+AGG | + | tig0023210:51032-51051 | None:intergenic | 45.0% | |
| ! | ATTTTCCTCTTCTTCCGGCA+AGG | - | tig0023210:51178-51197 | Msa1406500:CDS | 45.0% |
| TACTTCTTCAAGCCAGAGTG+TGG | + | tig0023210:51239-51258 | None:intergenic | 45.0% | |
| !! | CTCTGGCTTGAAGAAGTATC+TGG | - | tig0023210:51241-51260 | Msa1406500:CDS | 45.0% |
| ! | CGTTTTTAACACCCTCTGAG+GGG | + | tig0023210:51292-51311 | None:intergenic | 45.0% |
| !! | CCGTTTTTAACACCCTCTGA+GGG | + | tig0023210:51293-51312 | None:intergenic | 45.0% |
| !! | CCCTCAGAGGGTGTTAAAAA+CGG | - | tig0023210:51290-51309 | Msa1406500:CDS | 45.0% |
| !! | TAGGGTGTCGGATATTATGC+CGG | + | tig0023210:51339-51358 | None:intergenic | 45.0% |
| TACCTCTGAATCGGTGTGTA+GGG | + | tig0023210:51357-51376 | None:intergenic | 45.0% | |
| ATACCTCTGAATCGGTGTGT+AGG | + | tig0023210:51358-51377 | None:intergenic | 45.0% | |
| !! | CAAGCCTTTCCTTCAAGTTG+GGG | + | tig0023210:51883-51902 | None:intergenic | 45.0% |
| ! | CCAAGCCTTTCCTTCAAGTT+GGG | + | tig0023210:51884-51903 | None:intergenic | 45.0% |
| CCAACTTGAAGGAAAGGCTT+GGG | - | tig0023210:51882-51901 | Msa1406500:CDS | 45.0% | |
| CAACTTGAAGGAAAGGCTTG+GGG | - | tig0023210:51883-51902 | Msa1406500:CDS | 45.0% | |
| CGCGTTAGTAAATCGACTGT+TGG | - | tig0023210:51944-51963 | Msa1406500:CDS | 45.0% | |
| ATAGCCATCATTCGAGTCTC+AGG | - | tig0023210:51992-52011 | Msa1406500:CDS | 45.0% | |
| TAGCCATCATTCGAGTCTCA+GGG | - | tig0023210:51993-52012 | Msa1406500:CDS | 45.0% | |
| AGGGTCTATCAGTAGTGCAA+CGG | - | tig0023210:52012-52031 | Msa1406500:CDS | 45.0% | |
| GCAGGATACTACTTAGCAAC+GGG | - | tig0023210:52208-52227 | Msa1406500:CDS | 45.0% | |
| ATCAATGGAAGAGGTTCCAC+AGG | - | tig0023210:52303-52322 | Msa1406500:CDS | 45.0% | |
| TCAATGGAAGAGGTTCCACA+GGG | - | tig0023210:52304-52323 | Msa1406500:CDS | 45.0% | |
| !! | CTCGGTTTGGTTGATGCTAT+TGG | - | tig0023210:52364-52383 | Msa1406500:CDS | 45.0% |
| ! | GGTTTGGTTGATGCTATTGG+TGG | - | tig0023210:52367-52386 | Msa1406500:CDS | 45.0% |
| TTAAATTCCTCCTCCTCCCA+GGG | + | tig0023210:52490-52509 | None:intergenic | 45.0% | |
| ATTAAATTCCTCCTCCTCCC+AGG | + | tig0023210:52491-52510 | None:intergenic | 45.0% | |
| GTCACAGCGTTCATCTCTCA+TGG | - | tig0023210:50989-51008 | Msa1406500:CDS | 50.0% | |
| CTCGTGCGGTAGAATTTGAG+GGG | + | tig0023210:51050-51069 | None:intergenic | 50.0% | |
| GCTCGTGCGGTAGAATTTGA+GGG | + | tig0023210:51051-51070 | None:intergenic | 50.0% | |
| AACATCCTTGCCGGAAGAAG+AGG | + | tig0023210:51186-51205 | None:intergenic | 50.0% | |
| !!! | GCCGTTTTTAACACCCTCTG+AGG | + | tig0023210:51294-51313 | None:intergenic | 50.0% |
| TGAATCGGTGTGTAGGGTGT+CGG | + | tig0023210:51351-51370 | None:intergenic | 50.0% | |
| CCCAACTTGAAGGAAAGGCT+TGG | - | tig0023210:51881-51900 | Msa1406500:CDS | 50.0% | |
| CCCAAGCCTTTCCTTCAAGT+TGG | + | tig0023210:51885-51904 | None:intergenic | 50.0% | |
| AGACCCTGAGACTCGAATGA+TGG | + | tig0023210:51999-52018 | None:intergenic | 50.0% | |
| GTCCGAATTGACAGTTCAGG+AGG | - | tig0023210:52091-52110 | Msa1406500:CDS | 50.0% | |
| TCTGATGTGGCAACAAGTGC+AGG | - | tig0023210:52190-52209 | Msa1406500:CDS | 50.0% | |
| TACTACTTAGCAACGGGAGC+AGG | - | tig0023210:52214-52233 | Msa1406500:CDS | 50.0% | |
| CAATGGAAGAGGTTCCACAG+GGG | - | tig0023210:52305-52324 | Msa1406500:CDS | 50.0% | |
| GGTAAGGACGCAACATCTCT+CGG | - | tig0023210:52346-52365 | Msa1406500:CDS | 50.0% | |
| ACCCTGTCCAACTTTACCCT+GGG | - | tig0023210:52471-52490 | Msa1406500:CDS | 50.0% | |
| TCCCAGGGTAAAGTTGGACA+GGG | + | tig0023210:52475-52494 | None:intergenic | 50.0% | |
| GTCACAGCGTTCATCTCTCA+TGG | - | tig0023210:50989-51008 | Msa1406500:CDS | 50.0% | |
| CTCGTGCGGTAGAATTTGAG+GGG | + | tig0023210:51050-51069 | None:intergenic | 50.0% | |
| GCTCGTGCGGTAGAATTTGA+GGG | + | tig0023210:51051-51070 | None:intergenic | 50.0% | |
| AACATCCTTGCCGGAAGAAG+AGG | + | tig0023210:51186-51205 | None:intergenic | 50.0% | |
| !!! | GCCGTTTTTAACACCCTCTG+AGG | + | tig0023210:51294-51313 | None:intergenic | 50.0% |
| TGAATCGGTGTGTAGGGTGT+CGG | + | tig0023210:51351-51370 | None:intergenic | 50.0% | |
| CCCAACTTGAAGGAAAGGCT+TGG | - | tig0023210:51881-51900 | Msa1406500:CDS | 50.0% | |
| CCCAAGCCTTTCCTTCAAGT+TGG | + | tig0023210:51885-51904 | None:intergenic | 50.0% | |
| AGACCCTGAGACTCGAATGA+TGG | + | tig0023210:51999-52018 | None:intergenic | 50.0% | |
| GTCCGAATTGACAGTTCAGG+AGG | - | tig0023210:52091-52110 | Msa1406500:CDS | 50.0% | |
| TCTGATGTGGCAACAAGTGC+AGG | - | tig0023210:52190-52209 | Msa1406500:CDS | 50.0% | |
| TACTACTTAGCAACGGGAGC+AGG | - | tig0023210:52214-52233 | Msa1406500:CDS | 50.0% | |
| CAATGGAAGAGGTTCCACAG+GGG | - | tig0023210:52305-52324 | Msa1406500:CDS | 50.0% | |
| GGTAAGGACGCAACATCTCT+CGG | - | tig0023210:52346-52365 | Msa1406500:CDS | 50.0% | |
| ACCCTGTCCAACTTTACCCT+GGG | - | tig0023210:52471-52490 | Msa1406500:CDS | 50.0% | |
| TCCCAGGGTAAAGTTGGACA+GGG | + | tig0023210:52475-52494 | None:intergenic | 50.0% | |
| CGCTCGTGCGGTAGAATTTG+AGG | + | tig0023210:51052-51071 | None:intergenic | 55.0% | |
| !! | CACCCTACACACCGATTCAG+AGG | - | tig0023210:51352-51371 | Msa1406500:CDS | 55.0% |
| GAAGAGGTTCCACAGGGGAA+GGG | - | tig0023210:52310-52329 | Msa1406500:CDS | 55.0% | |
| AAGAGGTTCCACAGGGGAAG+GGG | - | tig0023210:52311-52330 | Msa1406500:CDS | 55.0% | |
| !! | GGGGAAGGTTTGGACTGGTA+AGG | - | tig0023210:52330-52349 | Msa1406500:CDS | 55.0% |
| GGACGCAACATCTCTCGGTT+TGG | - | tig0023210:52351-52370 | Msa1406500:CDS | 55.0% | |
| CACCCTGTCCAACTTTACCC+TGG | - | tig0023210:52470-52489 | Msa1406500:CDS | 55.0% | |
| CTCCCAGGGTAAAGTTGGAC+AGG | + | tig0023210:52476-52495 | None:intergenic | 55.0% | |
| CTGTCCAACTTTACCCTGGG+AGG | - | tig0023210:52474-52493 | Msa1406500:CDS | 55.0% | |
| TCCAACTTTACCCTGGGAGG+AGG | - | tig0023210:52477-52496 | Msa1406500:CDS | 55.0% | |
| TCCTCCTCCCAGGGTAAAGT+TGG | + | tig0023210:52481-52500 | None:intergenic | 55.0% | |
| AACTTTACCCTGGGAGGAGG+AGG | - | tig0023210:52480-52499 | Msa1406500:CDS | 55.0% | |
| CGCTCGTGCGGTAGAATTTG+AGG | + | tig0023210:51052-51071 | None:intergenic | 55.0% | |
| !! | CACCCTACACACCGATTCAG+AGG | - | tig0023210:51352-51371 | Msa1406500:CDS | 55.0% |
| GAAGAGGTTCCACAGGGGAA+GGG | - | tig0023210:52310-52329 | Msa1406500:CDS | 55.0% | |
| AAGAGGTTCCACAGGGGAAG+GGG | - | tig0023210:52311-52330 | Msa1406500:CDS | 55.0% | |
| !! | GGGGAAGGTTTGGACTGGTA+AGG | - | tig0023210:52330-52349 | Msa1406500:CDS | 55.0% |
| GGACGCAACATCTCTCGGTT+TGG | - | tig0023210:52351-52370 | Msa1406500:CDS | 55.0% | |
| CACCCTGTCCAACTTTACCC+TGG | - | tig0023210:52470-52489 | Msa1406500:CDS | 55.0% | |
| CTCCCAGGGTAAAGTTGGAC+AGG | + | tig0023210:52476-52495 | None:intergenic | 55.0% | |
| CTGTCCAACTTTACCCTGGG+AGG | - | tig0023210:52474-52493 | Msa1406500:CDS | 55.0% | |
| TCCAACTTTACCCTGGGAGG+AGG | - | tig0023210:52477-52496 | Msa1406500:CDS | 55.0% | |
| TCCTCCTCCCAGGGTAAAGT+TGG | + | tig0023210:52481-52500 | None:intergenic | 55.0% | |
| AACTTTACCCTGGGAGGAGG+AGG | - | tig0023210:52480-52499 | Msa1406500:CDS | 55.0% | |
| GCGGTGATATTGCGCTCGTG+CGG | + | tig0023210:51064-51083 | None:intergenic | 60.0% | |
| TCTGCTAGCACTCCCCTCAG+AGG | - | tig0023210:51277-51296 | Msa1406500:CDS | 60.0% | |
| CTGCTAGCACTCCCCTCAGA+GGG | - | tig0023210:51278-51297 | Msa1406500:CDS | 60.0% | |
| GGAAGAGGTTCCACAGGGGA+AGG | - | tig0023210:52309-52328 | Msa1406500:CDS | 60.0% | |
| CAAACCTTCCCCTTCCCCTG+TGG | + | tig0023210:52322-52341 | None:intergenic | 60.0% | |
| CACAGGGGAAGGGGAAGGTT+TGG | - | tig0023210:52320-52339 | Msa1406500:CDS | 60.0% | |
| GGGAAGGGGAAGGTTTGGAC+TGG | - | tig0023210:52325-52344 | Msa1406500:CDS | 60.0% | |
| GCGGTGATATTGCGCTCGTG+CGG | + | tig0023210:51064-51083 | None:intergenic | 60.0% | |
| TCTGCTAGCACTCCCCTCAG+AGG | - | tig0023210:51277-51296 | Msa1406500:CDS | 60.0% | |
| CTGCTAGCACTCCCCTCAGA+GGG | - | tig0023210:51278-51297 | Msa1406500:CDS | 60.0% | |
| GGAAGAGGTTCCACAGGGGA+AGG | - | tig0023210:52309-52328 | Msa1406500:CDS | 60.0% | |
| CAAACCTTCCCCTTCCCCTG+TGG | + | tig0023210:52322-52341 | None:intergenic | 60.0% | |
| CACAGGGGAAGGGGAAGGTT+TGG | - | tig0023210:52320-52339 | Msa1406500:CDS | 60.0% | |
| GGGAAGGGGAAGGTTTGGAC+TGG | - | tig0023210:52325-52344 | Msa1406500:CDS | 60.0% | |
| GGTTCCACAGGGGAAGGGGA+AGG | - | tig0023210:52315-52334 | Msa1406500:CDS | 65.0% | |
| GGTTCCACAGGGGAAGGGGA+AGG | - | tig0023210:52315-52334 | Msa1406500:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023210 | gene | 50987 | 52582 | 50987 | ID=Msa1406500;Name=Msa1406500 |
| tig0023210 | mRNA | 50987 | 52582 | 50987 | ID=Msa1406500-mRNA-1;Parent=Msa1406500;Name=Msa1406500-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|-1|0|1|-1|1|1|0|531 |
| tig0023210 | exon | 50987 | 52582 | 50987 | ID=Msa1406500-mRNA-1:exon:24621;Parent=Msa1406500-mRNA-1 |
| tig0023210 | CDS | 50987 | 52582 | 50987 | ID=Msa1406500-mRNA-1:cds;Parent=Msa1406500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
