Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1406980 | 0.807064 | 6.067648e-50 | -8.615850e-47 |
| Msa0110970 | Msa1406980 | 0.808990 | 2.360786e-50 | -8.615850e-47 |
| Msa0157290 | Msa1406980 | 0.807047 | 6.117719e-50 | -8.615850e-47 |
| Msa1238930 | Msa1406980 | 0.809914 | 1.494870e-50 | -8.615850e-47 |
| Msa1306850 | Msa1406980 | 0.807526 | 4.842430e-50 | -8.615850e-47 |
| Msa1308380 | Msa1406980 | 0.800361 | 1.494360e-48 | -8.615850e-47 |
| Msa0880140 | Msa1406980 | 0.807572 | 4.734405e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 10 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCGACTTCCTTTAATTTCT+TGG | 0.140936 | tig0023248:+44016 | Msa1406980:five_prime_UTR |
| TATTTCCTTTCTTACTTTGT+CGG | 0.303938 | tig0023248:+47586 | Msa1406980:three_prime_UTR |
| CACACAAACCAAGAAATTAA+AGG | 0.317020 | tig0023248:-44024 | None:intergenic |
| ATTGGAGAGAAGTTTGATAA+TGG | 0.340256 | tig0023248:+44270 | Msa1406980:exon |
| TTGAAAAGAAACCGAGCATT+AGG | 0.357779 | tig0023248:-47704 | None:intergenic |
| CAGAAATTCAAAAGGGATGA+AGG | 0.374176 | tig0023248:+44068 | Msa1406980:five_prime_UTR |
| GTTGATGATGAGTGCTGAAA+AGG | 0.499834 | tig0023248:+44303 | Msa1406980:CDS |
| ATAAACCGACAAAGTAAGAA+AGG | 0.510637 | tig0023248:-47591 | None:intergenic |
| ATATGAACTTTCCTAATGCT+CGG | 0.514200 | tig0023248:+47693 | Msa1406980:three_prime_UTR |
| AAATTCATGGTATCTATAAG+AGG | 0.523952 | tig0023248:+44121 | Msa1406980:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTGATACAAAATATAA+TGG | - | tig0023248:44856-44875 | None:intergenic | 10.0% |
| !!! | TTTATATATATTTTTGTTAC+AGG | + | tig0023248:44988-45007 | Msa1406980:intron | 10.0% |
| !!! | TTATTTGAAGTTTAATTAAA+TGG | + | tig0023248:45076-45095 | Msa1406980:intron | 10.0% |
| !! | CAATTTATCAATAAAATTTA+AGG | + | tig0023248:45496-45515 | Msa1406980:intron | 10.0% |
| !! | AATTTATGCAAAAAAAGTAA+GGG | - | tig0023248:44106-44125 | None:intergenic | 15.0% |
| !!! | AAACATTGATTGATTTTAAT+GGG | + | tig0023248:44151-44170 | Msa1406980:intron | 15.0% |
| !! | TGAAAGTTAAATTCAAAAAT+TGG | + | tig0023248:44252-44271 | Msa1406980:five_prime_UTR | 15.0% |
| !! | GTAAAAAAAAATAGACAAAA+CGG | - | tig0023248:45398-45417 | None:intergenic | 15.0% |
| !!! | ATTTTCATCTCTATTAATAA+TGG | + | tig0023248:45433-45452 | Msa1406980:intron | 15.0% |
| !!! | ATAAAATTTAAGGTTGTTTA+AGG | + | tig0023248:45506-45525 | Msa1406980:intron | 15.0% |
| !!! | TTCTTTTCATTTCTAATTTA+TGG | - | tig0023248:45644-45663 | None:intergenic | 15.0% |
| !! | AAATAAAATTATTCAACATG+TGG | - | tig0023248:45907-45926 | None:intergenic | 15.0% |
| !!! | ATGTTTTTTTTACTTTTGAT+TGG | + | tig0023248:46260-46279 | Msa1406980:intron | 15.0% |
| !! | CTAACTATTAATGATAATAA+GGG | - | tig0023248:46489-46508 | None:intergenic | 15.0% |
| !! | ACTAACTATTAATGATAATA+AGG | - | tig0023248:46490-46509 | None:intergenic | 15.0% |
| !! | TTTATATATAGATGTTGATA+TGG | - | tig0023248:47429-47448 | None:intergenic | 15.0% |
| !! | GAATTTATGCAAAAAAAGTA+AGG | - | tig0023248:44107-44126 | None:intergenic | 20.0% |
| !!! | ACTTTTTTTGCATAAATTCA+TGG | + | tig0023248:44108-44127 | Msa1406980:five_prime_UTR | 20.0% |
| !!! | GAAACATTGATTGATTTTAA+TGG | + | tig0023248:44150-44169 | Msa1406980:intron | 20.0% |
| !! | AATTCTAAACACAAACAAAT+AGG | + | tig0023248:44328-44347 | Msa1406980:intron | 20.0% |
| !!! | AGAAGTAATTTGCTAATTTT+TGG | + | tig0023248:44536-44555 | Msa1406980:intron | 20.0% |
| !! | ATTGAAACAAAATGAATGAA+AGG | - | tig0023248:44821-44840 | None:intergenic | 20.0% |
| !!! | TTTCAGTGAAAATAAACTTT+TGG | - | tig0023248:44899-44918 | None:intergenic | 20.0% |
| !!! | AATTAAATGGTTTTATGATG+TGG | + | tig0023248:45089-45108 | Msa1406980:intron | 20.0% |
| !! | TTCAGTAATATACAAATTTC+AGG | + | tig0023248:45191-45210 | Msa1406980:intron | 20.0% |
| !!! | TAATATACAAATTTCAGGTT+AGG | + | tig0023248:45196-45215 | Msa1406980:intron | 20.0% |
| !!! | TATATCAAAGATTTTGTAGA+AGG | + | tig0023248:45342-45361 | Msa1406980:intron | 20.0% |
| !! | CACTATTAATTAATAACCAA+GGG | - | tig0023248:45839-45858 | None:intergenic | 20.0% |
| !! | TCACTATTAATTAATAACCA+AGG | - | tig0023248:45840-45859 | None:intergenic | 20.0% |
| !!! | AGACTTTACTATTTTTCATT+TGG | + | tig0023248:45984-46003 | Msa1406980:intron | 20.0% |
| !!! | GACTTTACTATTTTTCATTT+GGG | + | tig0023248:45985-46004 | Msa1406980:intron | 20.0% |
| !! | TTATTGTTAAACTGAAAAAG+AGG | - | tig0023248:46048-46067 | None:intergenic | 20.0% |
| !! | AAATGAATATAATCATAGTC+CGG | - | tig0023248:46145-46164 | None:intergenic | 20.0% |
| !!! | TTTAAAAAGTATTGACATTC+TGG | + | tig0023248:46368-46387 | Msa1406980:intron | 20.0% |
| !!! | ACATTTTACATTTCTAAGAA+CGG | + | tig0023248:46463-46482 | Msa1406980:intron | 20.0% |
| !!! | TGTTTTTAGTTTAAGTTGTT+GGG | + | tig0023248:46616-46635 | Msa1406980:intron | 20.0% |
| !! | TAAAAGAATCAGACAATAAA+AGG | - | tig0023248:46859-46878 | None:intergenic | 20.0% |
| !! | TATTCAAGATATAAACCATA+AGG | + | tig0023248:46923-46942 | Msa1406980:intron | 20.0% |
| !! | TATAAAACAAAGTTACCTTA+TGG | - | tig0023248:46941-46960 | None:intergenic | 20.0% |
| !! | TTATACTTAAATGTCCAAAA+AGG | - | tig0023248:47052-47071 | None:intergenic | 20.0% |
| !! | TATGAACTATTAATATCCAA+AGG | - | tig0023248:47505-47524 | None:intergenic | 20.0% |
| !!! | TTATTATAATCGAATTTTGC+AGG | + | tig0023248:47541-47560 | Msa1406980:intron | 20.0% |
| !! | GAAAAATACAAAAATTACAG+AGG | - | tig0023248:47643-47662 | None:intergenic | 20.0% |
| !! | ATTTCTGAAAAAGCAATGAA+AGG | - | tig0023248:44055-44074 | None:intergenic | 25.0% |
| !!! | TGCTTTTTCAGAAATTCAAA+AGG | + | tig0023248:44060-44079 | Msa1406980:five_prime_UTR | 25.0% |
| !!! | GCTTTTTCAGAAATTCAAAA+GGG | + | tig0023248:44061-44080 | Msa1406980:five_prime_UTR | 25.0% |
| ! | AAATTCATGGTATCTATAAG+AGG | + | tig0023248:44121-44140 | Msa1406980:five_prime_UTR | 25.0% |
| !!! | GGACATTGATTGATTTTAAT+GGG | + | tig0023248:44172-44191 | Msa1406980:intron | 25.0% |
| !! | AAAACTTAAGTCTCTTTTTG+AGG | + | tig0023248:44384-44403 | Msa1406980:intron | 25.0% |
| !! | AAACTTAAGTCTCTTTTTGA+GGG | + | tig0023248:44385-44404 | Msa1406980:intron | 25.0% |
| ! | AGACTAGATAATTCTTTCTT+TGG | + | tig0023248:44622-44641 | Msa1406980:intron | 25.0% |
| ! | GATAATTCTTTCTTTGGTAA+AGG | + | tig0023248:44628-44647 | Msa1406980:intron | 25.0% |
| ! | TCACTGAAATTGTTTAATGT+AGG | + | tig0023248:44910-44929 | Msa1406980:intron | 25.0% |
| !! | TTTTCATTGTAGTTGATCAA+AGG | + | tig0023248:45253-45272 | Msa1406980:intron | 25.0% |
| ! | AAATCTTTGATATAGCATCA+TGG | - | tig0023248:45336-45355 | None:intergenic | 25.0% |
| ! | TGCGAAGAAAATTTAGAAAA+TGG | - | tig0023248:45368-45387 | None:intergenic | 25.0% |
| !! | GAAAAGAATTTTATCTTGAG+AGG | + | tig0023248:45656-45675 | Msa1406980:intron | 25.0% |
| ! | TATTTGTCTCTCTTTACTAT+AGG | + | tig0023248:45922-45941 | Msa1406980:intron | 25.0% |
| ! | ATTTGTCTCTCTTTACTATA+GGG | + | tig0023248:45923-45942 | Msa1406980:intron | 25.0% |
| ! | CACAAATATGGTTAGAAAAT+AGG | - | tig0023248:46072-46091 | None:intergenic | 25.0% |
| !! | CTATTTTCTAACCATATTTG+TGG | + | tig0023248:46070-46089 | Msa1406980:intron | 25.0% |
| !! | CTAAATGAGATAATTTTTGC+CGG | + | tig0023248:46123-46142 | Msa1406980:intron | 25.0% |
| !!! | CTGTTTTTAGTTTAAGTTGT+TGG | + | tig0023248:46615-46634 | Msa1406980:intron | 25.0% |
| !!! | GTTTTTAGTTTAAGTTGTTG+GGG | + | tig0023248:46617-46636 | Msa1406980:intron | 25.0% |
| ! | ATTGGATACCATAACTAAAT+AGG | - | tig0023248:46649-46668 | None:intergenic | 25.0% |
| ! | ATAAAAGGCAATGTCAATTT+CGG | - | tig0023248:46844-46863 | None:intergenic | 25.0% |
| ! | ATACCATGACATAATAACAT+TGG | + | tig0023248:46971-46990 | Msa1406980:intron | 25.0% |
| ! | ATAACATTGGAGATAATTAG+TGG | + | tig0023248:46984-47003 | Msa1406980:intron | 25.0% |
| ! | TAACATTGGAGATAATTAGT+GGG | + | tig0023248:46985-47004 | Msa1406980:intron | 25.0% |
| ! | AATTAGTGGGAATAAGATTA+AGG | + | tig0023248:46998-47017 | Msa1406980:intron | 25.0% |
| ! | ATTAGTGGGAATAAGATTAA+GGG | + | tig0023248:46999-47018 | Msa1406980:intron | 25.0% |
| !! | TATCAGTGTACACATTTTAT+TGG | - | tig0023248:47339-47358 | None:intergenic | 25.0% |
| ! | ACTATTAATATCCAAAGGAA+AGG | - | tig0023248:47500-47519 | None:intergenic | 25.0% |
| ! | TATTTCCTTTCTTACTTTGT+CGG | + | tig0023248:47586-47605 | Msa1406980:three_prime_UTR | 25.0% |
| ! | ATACAAAAATTACAGAGGAA+AGG | - | tig0023248:47638-47657 | None:intergenic | 25.0% |
| CACACAAACCAAGAAATTAA+AGG | - | tig0023248:44027-44046 | None:intergenic | 30.0% | |
| ATGGTATCTATAAGAGGTAA+TGG | + | tig0023248:44127-44146 | Msa1406980:intron | 30.0% | |
| TGGTATCTATAAGAGGTAAT+GGG | + | tig0023248:44128-44147 | Msa1406980:intron | 30.0% | |
| !! | GGGACATTGATTGATTTTAA+TGG | + | tig0023248:44171-44190 | Msa1406980:intron | 30.0% |
| ATTGGAGAGAAGTTTGATAA+TGG | + | tig0023248:44270-44289 | Msa1406980:exon | 30.0% | |
| CTTCACAAAAGAAGCTAATA+GGG | - | tig0023248:44667-44686 | None:intergenic | 30.0% | |
| ACTTCACAAAAGAAGCTAAT+AGG | - | tig0023248:44668-44687 | None:intergenic | 30.0% | |
| ! | AGGTTTCGCTTTAAGTTATT+TGG | + | tig0023248:44930-44949 | Msa1406980:intron | 30.0% |
| ! | TCAATTCTTTTCAGTTGTGA+TGG | + | tig0023248:45012-45031 | Msa1406980:CDS | 30.0% |
| !!! | TAAATGGTTTTATGATGTGG+AGG | + | tig0023248:45092-45111 | Msa1406980:intron | 30.0% |
| ATAAATTGATCCTGCAACAA+AGG | - | tig0023248:45142-45161 | None:intergenic | 30.0% | |
| AGAAATGAACCAAAAGACAA+AGG | - | tig0023248:45224-45243 | None:intergenic | 30.0% | |
| !!! | ATCAAAGGTGTGCATTTTTT+TGG | + | tig0023248:45268-45287 | Msa1406980:intron | 30.0% |
| ! | TTTCTAAATTTTCTTCGCAC+TGG | + | tig0023248:45369-45388 | Msa1406980:intron | 30.0% |
| ATAGATCAGATCCACAAATA+TGG | - | tig0023248:46084-46103 | None:intergenic | 30.0% | |
| TTCCAGAATATGTAATGAGT+GGG | - | tig0023248:46524-46543 | None:intergenic | 30.0% | |
| ! | CATTACATATTCTGGAAGTA+TGG | + | tig0023248:46527-46546 | Msa1406980:intron | 30.0% |
| GAATCATATTAAGAGAGAAG+AGG | - | tig0023248:46686-46705 | None:intergenic | 30.0% | |
| CTCTTAATATGATTCTTCGA+AGG | + | tig0023248:46691-46710 | Msa1406980:intron | 30.0% | |
| TTCATGGACAATTTCTTTAG+TGG | - | tig0023248:46788-46807 | None:intergenic | 30.0% | |
| ACTAAAGAAATTGTCCATGA+AGG | + | tig0023248:46787-46806 | Msa1406980:intron | 30.0% | |
| TCTCCAATGTTATTATGTCA+TGG | - | tig0023248:46977-46996 | None:intergenic | 30.0% | |
| TTAGTGGGAATAAGATTAAG+GGG | + | tig0023248:47000-47019 | Msa1406980:intron | 30.0% | |
| TACCTATTTGAATTGTGTCA+CGG | + | tig0023248:47086-47105 | Msa1406980:intron | 30.0% | |
| !! | CATTTGATTTGAGGATAAAG+AGG | - | tig0023248:47274-47293 | None:intergenic | 30.0% |
| !! | AATGTCACTTGCAAATTTTG+AGG | + | tig0023248:47290-47309 | Msa1406980:intron | 30.0% |
| TCTAGTTAAAGCGTATACAT+AGG | - | tig0023248:47476-47495 | None:intergenic | 30.0% | |
| ATAAACCGACAAAGTAAGAA+AGG | - | tig0023248:47594-47613 | None:intergenic | 30.0% | |
| !!! | CTTTGTCGGTTTATATTTTG+AGG | + | tig0023248:47600-47619 | Msa1406980:three_prime_UTR | 30.0% |
| ATATGAACTTTCCTAATGCT+CGG | + | tig0023248:47693-47712 | Msa1406980:three_prime_UTR | 30.0% | |
| ! | CTCGACTTCCTTTAATTTCT+TGG | + | tig0023248:44016-44035 | Msa1406980:five_prime_UTR | 35.0% |
| CAGAAATTCAAAAGGGATGA+AGG | + | tig0023248:44068-44087 | Msa1406980:five_prime_UTR | 35.0% | |
| AAACACAAACAAATAGGCAC+AGG | + | tig0023248:44334-44353 | Msa1406980:intron | 35.0% | |
| TTGTTGAGTTACTCTTGTGT+AGG | - | tig0023248:44474-44493 | None:intergenic | 35.0% | |
| !! | TCTTTTCAGTTGTGATGGAA+AGG | + | tig0023248:45017-45036 | Msa1406980:CDS | 35.0% |
| GATTAAGCATAAAACCAGCA+AGG | - | tig0023248:45314-45333 | None:intergenic | 35.0% | |
| !! | TAGAAGTACTGCTTGATGTT+TGG | + | tig0023248:45703-45722 | Msa1406980:intron | 35.0% |
| !! | GCTTTTCTTTTTTGCAAGAG+AGG | + | tig0023248:46007-46026 | Msa1406980:intron | 35.0% |
| GTCAGTAGTATGTCAACATA+TGG | + | tig0023248:46231-46250 | Msa1406980:intron | 35.0% | |
| CTTCCAGAATATGTAATGAG+TGG | - | tig0023248:46525-46544 | None:intergenic | 35.0% | |
| GGTCAGTTCCTATTTAGTTA+TGG | + | tig0023248:46638-46657 | Msa1406980:intron | 35.0% | |
| GGTATCCAATTCAGTAAATG+AGG | + | tig0023248:46659-46678 | Msa1406980:intron | 35.0% | |
| !! | AAAGGTTGAGAGAGTGTTAT+GGG | - | tig0023248:47034-47053 | None:intergenic | 35.0% |
| !! | AAAAGGTTGAGAGAGTGTTA+TGG | - | tig0023248:47035-47054 | None:intergenic | 35.0% |
| ! | TAACACTCTCTCAACCTTTT+TGG | + | tig0023248:47035-47054 | Msa1406980:intron | 35.0% |
| TGTGTATCTAGTAGTTGCAA+TGG | - | tig0023248:47145-47164 | None:intergenic | 35.0% | |
| ATCGTATGACTTGAGAAGAA+AGG | - | tig0023248:47183-47202 | None:intergenic | 35.0% | |
| !! | TGCAAGTGACATTTGATTTG+AGG | - | tig0023248:47283-47302 | None:intergenic | 35.0% |
| GAAGCTAAAACGATATTCAC+AGG | - | tig0023248:47407-47426 | None:intergenic | 35.0% | |
| GTTCATGAGAAACGAACATT+TGG | - | tig0023248:47454-47473 | None:intergenic | 35.0% | |
| TTTAACTAGAGCCTTTCCTT+TGG | + | tig0023248:47486-47505 | Msa1406980:intron | 35.0% | |
| TTGAAAAGAAACCGAGCATT+AGG | - | tig0023248:47707-47726 | None:intergenic | 35.0% | |
| ! | CTGCACTTGGTAACAACAAA+AGG | - | tig0023248:44210-44229 | None:intergenic | 40.0% |
| !!! | CTTTTGTTGTTACCAAGTGC+AGG | + | tig0023248:44208-44227 | Msa1406980:intron | 40.0% |
| !! | GTTGATGATGAGTGCTGAAA+AGG | + | tig0023248:44303-44322 | Msa1406980:CDS | 40.0% |
| AAACAAATAGGCACAGGATC+AGG | + | tig0023248:44340-44359 | Msa1406980:intron | 40.0% | |
| ! | ACTACTAGCTTATGCATGTG+AGG | + | tig0023248:45168-45187 | Msa1406980:intron | 40.0% |
| ! | GGTTAGGTTCCTTTGTCTTT+TGG | + | tig0023248:45212-45231 | Msa1406980:intron | 40.0% |
| !! | CTTTTTGTGATTTGCCTTGC+TGG | + | tig0023248:45297-45316 | Msa1406980:intron | 40.0% |
| ! | TGGTGATGTGAATTAGCTAC+TGG | + | tig0023248:45723-45742 | Msa1406980:intron | 40.0% |
| GATGTGAATTAGCTACTGGA+TGG | + | tig0023248:45727-45746 | Msa1406980:intron | 40.0% | |
| GGGTCTAATATGATACTGTG+CGG | + | tig0023248:45943-45962 | Msa1406980:intron | 40.0% | |
| GACCCACTCATTACATATTC+TGG | + | tig0023248:46519-46538 | Msa1406980:intron | 40.0% | |
| GAGGACCTCATTTACTGAAT+TGG | - | tig0023248:46667-46686 | None:intergenic | 40.0% | |
| GGCAACACTAAAATCCTTCA+TGG | - | tig0023248:46804-46823 | None:intergenic | 40.0% | |
| ! | GTTGCCTTCAAGTTACCTTA+TGG | + | tig0023248:46818-46837 | Msa1406980:intron | 40.0% |
| CAATGTCAATTTCGGCCATA+AGG | - | tig0023248:46836-46855 | None:intergenic | 40.0% | |
| AGCCGTGACACAATTCAAAT+AGG | - | tig0023248:47091-47110 | None:intergenic | 40.0% | |
| TTGAATTGTGTCACGGCTTT+AGG | + | tig0023248:47093-47112 | Msa1406980:intron | 40.0% | |
| AGTCATACGATGCATACATG+TGG | + | tig0023248:47192-47211 | Msa1406980:intron | 40.0% | |
| GTCATACGATGCATACATGT+GGG | + | tig0023248:47193-47212 | Msa1406980:intron | 40.0% | |
| TCATACGATGCATACATGTG+GGG | + | tig0023248:47194-47213 | Msa1406980:intron | 40.0% | |
| TACATGTGGGGTTATTTGTG+TGG | + | tig0023248:47206-47225 | Msa1406980:intron | 40.0% | |
| TCCGCGATTTATACTGGAAA+AGG | + | tig0023248:47233-47252 | Msa1406980:intron | 40.0% | |
| ! | CCCTTTTCCAGTATAAATCG+CGG | - | tig0023248:47237-47256 | None:intergenic | 40.0% |
| CCGCGATTTATACTGGAAAA+GGG | + | tig0023248:47234-47253 | Msa1406980:intron | 40.0% | |
| GAGTTACTCTTGTGTAGGAC+AGG | - | tig0023248:44469-44488 | None:intergenic | 45.0% | |
| ! | AAGTATGTCTGAGATGCCCT+TGG | + | tig0023248:45820-45839 | Msa1406980:intron | 45.0% |
| TCGGCCATAAGGTAACTTGA+AGG | - | tig0023248:46825-46844 | None:intergenic | 45.0% | |
| !! | TTGTGTCACGGCTTTAGGAT+TGG | + | tig0023248:47098-47117 | Msa1406980:intron | 45.0% |
| ATGTGGGGTTATTTGTGTGG+AGG | + | tig0023248:47209-47228 | Msa1406980:intron | 45.0% | |
| !!! | TAATTTTCTTATTTTAATTT+TGG | + | tig0023248:45773-45792 | Msa1406980:intron | 5.0% |
| CATCGTTCTTCACCTGCACT+TGG | - | tig0023248:44223-44242 | None:intergenic | 50.0% | |
| ! | ACAAGTGCTGCCTTTGTTGC+AGG | + | tig0023248:45129-45148 | Msa1406980:intron | 50.0% |
| TAGCTACTGGATGGTCACAC+TGG | + | tig0023248:45736-45755 | Msa1406980:intron | 50.0% | |
| !! | GGCTTTAGGATTGGAGACTC+TGG | + | tig0023248:47107-47126 | Msa1406980:intron | 50.0% |
| GGAGGCTCCGCGATTTATAC+TGG | + | tig0023248:47227-47246 | Msa1406980:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023248 | gene | 44012 | 47749 | 44012 | ID=Msa1406980;Name=Msa1406980 |
| tig0023248 | mRNA | 44012 | 47749 | 44012 | ID=Msa1406980-mRNA-1;Parent=Msa1406980;Name=Msa1406980-mRNA-1;_AED=0.50;_eAED=0.61;_QI=190|0.66|0.75|1|0|0|4|174|25 |
| tig0023248 | exon | 44012 | 44142 | 44012 | ID=Msa1406980-mRNA-1:exon:24837;Parent=Msa1406980-mRNA-1 |
| tig0023248 | exon | 44230 | 44324 | 44230 | ID=Msa1406980-mRNA-1:exon:24838;Parent=Msa1406980-mRNA-1 |
| tig0023248 | exon | 45010 | 45038 | 45010 | ID=Msa1406980-mRNA-1:exon:24839;Parent=Msa1406980-mRNA-1 |
| tig0023248 | exon | 47563 | 47749 | 47563 | ID=Msa1406980-mRNA-1:exon:24840;Parent=Msa1406980-mRNA-1 |
| tig0023248 | five_prime_UTR | 44012 | 44142 | 44012 | ID=Msa1406980-mRNA-1:five_prime_utr;Parent=Msa1406980-mRNA-1 |
| tig0023248 | five_prime_UTR | 44230 | 44288 | 44230 | ID=Msa1406980-mRNA-1:five_prime_utr;Parent=Msa1406980-mRNA-1 |
| tig0023248 | CDS | 44289 | 44324 | 44289 | ID=Msa1406980-mRNA-1:cds;Parent=Msa1406980-mRNA-1 |
| tig0023248 | CDS | 45010 | 45038 | 45010 | ID=Msa1406980-mRNA-1:cds;Parent=Msa1406980-mRNA-1 |
| tig0023248 | CDS | 47563 | 47575 | 47563 | ID=Msa1406980-mRNA-1:cds;Parent=Msa1406980-mRNA-1 |
| tig0023248 | three_prime_UTR | 47576 | 47749 | 47576 | ID=Msa1406980-mRNA-1:three_prime_utr;Parent=Msa1406980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
