AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1238930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1238930 MtrunA17_Chr8g0350681 97.504 561 14 0 20 580 1 561 0.0 1096
Msa1238930 MtrunA17_Chr7g0246731 78.546 564 114 3 20 580 1 560 0.0 886
Msa1238930 MtrunA17_Chr3g0131821 35.382 537 321 13 56 579 30 553 1.83e-80 263
Msa1238930 MtrunA17_Chr4g0048401 29.365 504 311 12 44 520 27 512 2.97e-53 190
Msa1238930 MtrunA17_Chr4g0002071 32.317 164 108 3 416 576 13 176 3.24e-21 91.7
Msa1238930 MtrunA17_Chr1g0152561 29.661 236 154 6 257 485 101 331 8.94e-21 94.0
Msa1238930 MtrunA17_Chr1g0183781 28.862 246 162 7 257 497 480 717 1.78e-17 86.3
Msa1238930 MtrunA17_Chr7g0261371 29.218 243 151 11 257 488 554 786 3.91e-16 82.0
Msa1238930 MtrunA17_Chr7g0261371 31.034 203 134 4 356 555 528 727 4.38e-11 65.9
Msa1238930 MtrunA17_Chr7g0248251 28.315 279 191 8 220 493 370 644 3.05e-15 79.0
Msa1238930 MtrunA17_Chr7g0248251 27.018 285 195 7 165 444 361 637 9.00e-13 71.2
Msa1238930 MtrunA17_Chr3g0106931 26.415 212 152 3 173 384 551 758 2.64e-11 66.6
Msa1238930 MtrunA17_Chr4g0031431 24.601 313 217 8 214 511 350 658 4.02e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1238930 AT2G45720.1 67.023 561 177 4 20 580 1 553 0.0 750
Msa1238930 AT2G45720.2 67.023 561 177 4 20 580 1 553 0.0 750
Msa1238930 AT2G45720.5 67.023 561 177 4 20 580 1 553 0.0 750
Msa1238930 AT2G45720.3 67.023 561 177 4 20 580 1 553 0.0 750
Msa1238930 AT2G45720.4 67.023 561 177 4 20 580 1 553 0.0 750
Msa1238930 AT1G01830.1 63.158 570 203 5 13 579 9 574 0.0 677
Msa1238930 AT1G01830.3 63.158 570 203 5 13 579 9 574 0.0 677
Msa1238930 AT1G01830.2 63.158 570 203 5 13 579 9 574 0.0 677
Msa1238930 AT5G50900.1 38.418 531 311 9 59 579 30 554 5.08e-102 320
Msa1238930 AT1G61350.1 28.154 547 358 12 57 578 32 568 1.68e-62 216
Msa1238930 AT2G05810.1 32.037 540 341 12 56 577 41 572 3.17e-50 182
Msa1238930 AT2G05810.2 32.037 540 341 12 56 577 41 572 3.17e-50 182
Msa1238930 AT5G58680.1 27.869 244 164 6 253 489 99 337 1.37e-21 97.1
Msa1238930 AT3G54790.2 27.957 279 183 9 225 499 454 718 8.37e-18 87.8
Msa1238930 AT3G01400.1 26.724 232 158 6 257 481 105 331 9.21e-18 85.5
Msa1238930 AT3G54790.3 27.957 279 183 9 225 499 490 754 1.02e-17 87.4
Msa1238930 AT3G54790.1 27.957 279 183 9 225 499 490 754 1.02e-17 87.4
Msa1238930 AT2G23140.2 25.000 324 197 7 167 489 537 815 8.38e-16 81.6
Msa1238930 AT2G23140.4 25.000 324 197 7 167 489 537 815 8.38e-16 81.6
Msa1238930 AT2G23140.1 25.000 324 197 7 167 489 540 818 9.99e-16 81.3
Msa1238930 AT2G23140.3 25.000 324 197 7 167 489 348 626 2.96e-15 79.3
Msa1238930 AT2G23140.5 25.000 324 197 7 167 489 348 626 2.96e-15 79.3
Msa1238930 AT5G67340.1 27.622 286 194 8 165 444 415 693 3.05e-13 73.2
Msa1238930 AT5G67340.2 27.622 286 194 8 165 444 415 693 3.05e-13 73.2
Msa1238930 AT2G28830.1 25.697 323 184 7 170 483 280 555 6.13e-13 72.0
Msa1238930 AT3G46510.1 26.027 292 195 8 175 455 354 635 2.20e-12 70.5
Msa1238930 AT3G20170.1 25.796 314 223 7 204 512 94 402 1.95e-11 67.0

Find 92 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTTGCAATTCAATGTTTC+TGG 0.143782 8_2:-19888154 Msa1238930:CDS
GAAAATGATCATTTCAAAAT+TGG 0.161848 8_2:-19888428 Msa1238930:CDS
AGTGATCTTGATGCATTAAT+TGG 0.208436 8_2:-19888241 Msa1238930:CDS
ACAAAAGCAAAAGAGGTAAA+AGG 0.218390 8_2:-19888466 Msa1238930:CDS
TAAGCTTGATTTGAATTTAA+AGG 0.223787 8_2:-19888218 Msa1238930:CDS
GATAAATCTGATAGCTTTGT+TGG 0.250349 8_2:+19888397 None:intergenic
TGATAAAAGCGTGCCGAATT+TGG 0.254800 8_2:-19887114 Msa1238930:CDS
CTTAACAATGGAATGTTGTT+AGG 0.279304 8_2:-19887575 Msa1238930:CDS
ATGATTTCATATGGAGCAAT+AGG 0.295280 8_2:-19886996 Msa1238930:CDS
TTGTACTTTGAAGAATATTT+CGG 0.300330 8_2:-19887660 Msa1238930:CDS
GCTTGTTTAGCAGAAAATAA+TGG 0.327217 8_2:-19886893 Msa1238930:exon
CAGGAGCAATGTTGTAGCTT+TGG 0.328852 8_2:-19887978 Msa1238930:CDS
CTTATAAGGCTTGTTGAATC+AGG 0.333515 8_2:-19887833 Msa1238930:CDS
GAAGAATATTTCGGCTGTTC+CGG 0.352070 8_2:-19887651 Msa1238930:CDS
ATATGTTCTCTCGTTGAATC+AGG 0.354019 8_2:-19887902 Msa1238930:CDS
AGCATTCTGGCTTATCTTGA+TGG 0.358265 8_2:-19887461 Msa1238930:CDS
ATTGAGATGAAGAAAATGTT+AGG 0.362317 8_2:-19887266 Msa1238930:CDS
AGGCGGCGTTCGGAGCATTC+TGG 0.362992 8_2:-19887474 Msa1238930:CDS
TGAAACACATTGCAATATAA+AGG 0.363467 8_2:-19888110 Msa1238930:CDS
GAGGAAACTCTGGTTTCTCT+TGG 0.367522 8_2:-19887380 Msa1238930:CDS
ATTCCAAATGACCGATTTGA+AGG 0.386292 8_2:+19888074 None:intergenic
AGAAGATGAGAAGAATGTTT+TGG 0.395990 8_2:-19888011 Msa1238930:CDS
ACTTTGCAAGGAACAATTGC+AGG 0.396923 8_2:-19888347 Msa1238930:CDS
GGAATCGAAACACAAAGCTT+TGG 0.406964 8_2:-19888056 Msa1238930:CDS
TCAAGCAATTGAACCAAATT+CGG 0.411317 8_2:+19887101 None:intergenic
CAGGTGGTAGCTGCGAAAAC+TGG 0.414403 8_2:-19887883 Msa1238930:CDS
TTATATCAGAAGGCGGCGTT+CGG 0.426169 8_2:-19887484 Msa1238930:CDS
ACCATGGTTTGAAAATTTGT+AGG 0.426598 8_2:+19888577 None:intergenic
CTTCTTGTAAGAAATGTAAG+AGG 0.429375 8_2:-19887022 Msa1238930:CDS
GCGCCTTCAAATCGGTCATT+TGG 0.429433 8_2:-19888077 Msa1238930:CDS
AAGAAAATGTTAGGGGAAGT+TGG 0.432192 8_2:-19887257 Msa1238930:CDS
AGCTGAAGAAGGTGTTGTTA+AGG 0.433839 8_2:-19887612 Msa1238930:CDS
AAGAGGTTGATGATTTCATA+TGG 0.439272 8_2:-19887005 Msa1238930:CDS
CAAAAGCAAAAGAGGTAAAA+GGG 0.447886 8_2:-19888465 Msa1238930:CDS
GCTAAAACCTGTCTCACTTC+CGG 0.450156 8_2:+19887632 None:intergenic
CAGCAACATCAACAAGGATA+AGG 0.452305 8_2:-19887943 Msa1238930:CDS
TGCTCTTACAAAAGCAAAAG+AGG 0.453910 8_2:-19888473 Msa1238930:CDS
CTTATTGAGATGGAGATTCC+AGG 0.454254 8_2:-19886960 Msa1238930:CDS
AGGCTATTGTTTCTCTTCAA+AGG 0.458318 8_2:-19887790 Msa1238930:CDS
TTGAGATGAAGAAAATGTTA+GGG 0.459812 8_2:-19887265 Msa1238930:CDS
AAAGAGGTAAAAGGGTTTCA+AGG 0.463216 8_2:-19888457 Msa1238930:CDS
AGCAACATCAACAAGGATAA+GGG 0.463755 8_2:-19887942 Msa1238930:CDS
GGCTGTTCCGGAAGTGAGAC+AGG 0.464868 8_2:-19887639 Msa1238930:CDS
TTTGAAGAAGCTTATTGAGA+TGG 0.470732 8_2:-19886970 Msa1238930:CDS
TGCTTGAAAGATTGGAAAGA+GGG 0.471530 8_2:-19886926 Msa1238930:CDS
TTAGTCGAGCTTTGTCAGAT+TGG 0.481298 8_2:-19887710 Msa1238930:CDS
TTCAAAGAATGCACTTTGCA+AGG 0.481446 8_2:-19888359 Msa1238930:CDS
TGATTTCATATGGAGCAATA+GGG 0.489291 8_2:-19886995 Msa1238930:CDS
TCAAGCATGTTGATCAATAG+AGG 0.491275 8_2:+19887227 None:intergenic
ATCGGTTCCCGAGGAAACTC+TGG 0.495808 8_2:-19887390 Msa1238930:CDS
AGGTAAAAGGGTTTCAAGGT+AGG 0.497943 8_2:-19888453 Msa1238930:CDS
AAATACGCAGTATGTTGCCT+TGG 0.499840 8_2:-19887053 Msa1238930:CDS
TAGTGCTGTTGCTAAAGAAA+AGG 0.507050 8_2:-19887810 Msa1238930:CDS
AAGAGAAACCAGAGTTTCCT+CGG 0.511511 8_2:+19887382 None:intergenic
ATACATGTTCAACAGAAGAA+TGG 0.512048 8_2:-19888525 Msa1238930:CDS
ACAGCAGATTCTTGAGGAAG+TGG 0.514857 8_2:+19887437 None:intergenic
CTACTCGCGCGCCTTCAAAT+CGG 0.521728 8_2:-19888085 Msa1238930:CDS
CTTCCTCAAGAATCTGCTGT+TGG 0.535097 8_2:-19887434 Msa1238930:CDS
TTGCTTGAAAGATTGGAAAG+AGG 0.535251 8_2:-19886927 Msa1238930:CDS
TGCGATCGTCGGACATGGAG+GGG 0.541802 8_2:-19887741 Msa1238930:CDS
ATCTGACAAAGCTCGACTAA+CGG 0.545060 8_2:+19887713 None:intergenic
TCTTCAAAGGTTGTCTATGA+CGG 0.545473 8_2:-19887777 Msa1238930:CDS
TCTCAATTGAGCTACAAATC+CGG 0.546227 8_2:+19887282 None:intergenic
TGTTTGAAAGAAAAGTATGA+AGG 0.548037 8_2:-19888280 Msa1238930:CDS
ATGATCAATCTTCTTAACAA+TGG 0.556218 8_2:-19887587 Msa1238930:CDS
GAAAACTGGTTAGTTTCTGA+AGG 0.563650 8_2:-19887869 Msa1238930:CDS
TCTATTGATCAACATGCTTG+AGG 0.566566 8_2:-19887225 Msa1238930:CDS
ACTCGTGCGATCGTCGGACA+TGG 0.574468 8_2:-19887746 Msa1238930:CDS
TCTCGTTGCATCGGTTCCCG+AGG 0.575053 8_2:-19887399 Msa1238930:CDS
AGAAGGTCTGTTATATCAGA+AGG 0.575080 8_2:-19887494 Msa1238930:CDS
AACCGTGGTATGCAAAACCT+TGG 0.575425 8_2:-19886749 Msa1238930:three_prime_UTR
TAAAAGGGTTTCAAGGTAGG+TGG 0.577886 8_2:-19888450 Msa1238930:CDS
ATTGAGGAATCTCGTTGCAT+CGG 0.583014 8_2:-19887408 Msa1238930:CDS
AAATCGAAGAGAGGTTAAGA+AGG 0.584354 8_2:-19887138 Msa1238930:CDS
AGAGAAACCAGAGTTTCCTC+GGG 0.603254 8_2:+19887383 None:intergenic
ATTGATTACACAAATTACCA+AGG 0.616334 8_2:+19886732 None:intergenic
GATTCAACAAGCCTTATAAG+TGG 0.616500 8_2:+19887836 None:intergenic
TACAAGAAGAAAGTGATCCA+AGG 0.619451 8_2:+19887036 None:intergenic
AACTATACTATCTTCCACCA+TGG 0.626237 8_2:+19888561 None:intergenic
ACTAAAAGACAGTTGAAACA+TGG 0.628618 8_2:+19886863 None:intergenic
TCAACAAGCCTTATAAGTGG+TGG 0.632485 8_2:+19887839 None:intergenic
CAAGCAATGAGAATCTGAGA+AGG 0.635445 8_2:-19887511 Msa1238930:CDS
TTCAAAACATGAACTAAACA+AGG 0.642239 8_2:+19887350 None:intergenic
CGTGCGATCGTCGGACATGG+AGG 0.642977 8_2:-19887743 Msa1238930:CDS
GCACCAACAGCAGATTCTTG+AGG 0.646827 8_2:+19887431 None:intergenic
TGTTCTCTCGTTGAATCAGG+TGG 0.652003 8_2:-19887899 Msa1238930:CDS
AATCTGCTGTTGGTGCATTG+AGG 0.654433 8_2:-19887424 Msa1238930:CDS
TGCTTACAGCAACATCAACA+AGG 0.669898 8_2:-19887949 Msa1238930:CDS
TCTGTCGCAAAATCGAAGAG+AGG 0.676427 8_2:-19887147 Msa1238930:CDS
TGAGATGAAGAAAATGTTAG+GGG 0.680176 8_2:-19887264 Msa1238930:CDS
AGGTCTGTTATATCAGAAGG+CGG 0.697553 8_2:-19887491 Msa1238930:CDS
TAGCTTAGAATGTAAAACCG+TGG 0.698492 8_2:-19886764 Msa1238930:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTAGTTTTTAAAACT+TGG - chr8_2:19886864-19886883 Msa1238930:three_prime_UTR 10.0%
!!! TTCTTTTAAGTTATTTTTGT+TGG - chr8_2:19886827-19886846 Msa1238930:three_prime_UTR 15.0%
!!! ATAATTATCTAAACTTTTGT+TGG + chr8_2:19887109-19887128 None:intergenic 15.0%
!! CAAAAGTTTAGATAATTATA+AGG - chr8_2:19887110-19887129 Msa1238930:CDS 15.0%
!! CTAAAAAATATCAAAAGAGT+AGG + chr8_2:19886853-19886872 None:intergenic 20.0%
!!! AGTTTTTAAAACTTGGTATT+CGG - chr8_2:19886871-19886890 Msa1238930:three_prime_UTR 20.0%
!!! ATTTTGCTCTAAATTTAGAT+GGG + chr8_2:19886948-19886967 None:intergenic 20.0%
!!! AATTTTGCTCTAAATTTAGA+TGG + chr8_2:19886949-19886968 None:intergenic 20.0%
!!! TATGTATAAGAATTTTCTGT+TGG - chr8_2:19887163-19887182 Msa1238930:CDS 20.0%
!!! GAGTCTTGATTTTTAATTTA+AGG - chr8_2:19887185-19887204 Msa1238930:CDS 20.0%
!! TTGTATATAGAAAGTTAAGA+AGG + chr8_2:19887237-19887256 None:intergenic 20.0%
!! GAAAATGATCATTTCAAAAT+TGG - chr8_2:19887525-19887544 Msa1238930:CDS 20.0%
!!! TAAGCTTGATTTGAATTTAA+AGG - chr8_2:19887735-19887754 Msa1238930:CDS 20.0%
!!! TTGTACTTTGAAGAATATTT+CGG - chr8_2:19888293-19888312 Msa1238930:CDS 20.0%
! TAAAGTAAGAGAAATACTCA+TGG - chr8_2:19886723-19886742 Msa1238930:three_prime_UTR 25.0%
! AAAGTAAGAGAAATACTCAT+GGG - chr8_2:19886724-19886743 Msa1238930:three_prime_UTR 25.0%
! TTATCTGTTGGTATTATCTT+GGG + chr8_2:19887038-19887057 None:intergenic 25.0%
! TTTATCTGTTGGTATTATCT+TGG + chr8_2:19887039-19887058 None:intergenic 25.0%
!! TACAAGTTGAATTTATCTGT+TGG + chr8_2:19887050-19887069 None:intergenic 25.0%
!! TATAAAGTTGCATGCTTTTA+GGG + chr8_2:19887075-19887094 None:intergenic 25.0%
!! TTATAAAGTTGCATGCTTTT+AGG + chr8_2:19887076-19887095 None:intergenic 25.0%
!! CATGCAACTTTATAATTTGT+AGG - chr8_2:19887081-19887100 Msa1238930:CDS 25.0%
! TATCATTTCCTTTCTACAAT+TGG - chr8_2:19887270-19887289 Msa1238930:CDS 25.0%
!! TGTTTGAAAGAAAAGTATGA+AGG - chr8_2:19887673-19887692 Msa1238930:CDS 25.0%
! TGAAACACATTGCAATATAA+AGG - chr8_2:19887843-19887862 Msa1238930:CDS 25.0%
! ATGATCAATCTTCTTAACAA+TGG - chr8_2:19888366-19888385 Msa1238930:CDS 25.0%
! TTCAAAACATGAACTAAACA+AGG + chr8_2:19888606-19888625 None:intergenic 25.0%
!!! TTAGTTCATGTTTTGAAATC+AGG - chr8_2:19888609-19888628 Msa1238930:CDS 25.0%
! ATTGAGATGAAGAAAATGTT+AGG - chr8_2:19888687-19888706 Msa1238930:intron 25.0%
! TTGAGATGAAGAAAATGTTA+GGG - chr8_2:19888688-19888707 Msa1238930:intron 25.0%
! TAAAAAGTTGCTTGAAAGAT+TGG - chr8_2:19889019-19889038 Msa1238930:intron 25.0%
! ATTGATTACACAAATTACCA+AGG + chr8_2:19889224-19889243 None:intergenic 25.0%
!!! TGTGTTTTGGAATTTTCCAA+AGG - chr8_2:19886681-19886700 Msa1238930:three_prime_UTR 30.0%
!!! GTGTTTTGGAATTTTCCAAA+GGG - chr8_2:19886682-19886701 Msa1238930:three_prime_UTR 30.0%
AGTGATCATTTAATACCCTT+TGG + chr8_2:19886700-19886719 None:intergenic 30.0%
AAGTAAGAGAAATACTCATG+GGG - chr8_2:19886725-19886744 Msa1238930:three_prime_UTR 30.0%
AATCCTATTGTCCATTTGTA+AGG - chr8_2:19886921-19886940 Msa1238930:CDS 30.0%
ATAGAAAGTTAAGAAGGTTG+TGG + chr8_2:19887231-19887250 None:intergenic 30.0%
CAAAGATACCAATTGTAGAA+AGG + chr8_2:19887281-19887300 None:intergenic 30.0%
CTACAATTGGTATCTTTGTT+TGG - chr8_2:19887283-19887302 Msa1238930:CDS 30.0%
TTTCTTCTATTCTACAGCTT+TGG - chr8_2:19887325-19887344 Msa1238930:CDS 30.0%
! TCCTACAAATTTTCAAACCA+TGG - chr8_2:19887375-19887394 Msa1238930:CDS 30.0%
ACCATGGTTTGAAAATTTGT+AGG + chr8_2:19887379-19887398 None:intergenic 30.0%
! TACAAATTTTCAAACCATGG+TGG - chr8_2:19887378-19887397 Msa1238930:CDS 30.0%
ATACATGTTCAACAGAAGAA+TGG - chr8_2:19887428-19887447 Msa1238930:CDS 30.0%
!! TTTGCTTTTGTAAGAGCAAT+AGG + chr8_2:19887478-19887497 None:intergenic 30.0%
ACAAAAGCAAAAGAGGTAAA+AGG - chr8_2:19887487-19887506 Msa1238930:CDS 30.0%
CAAAAGCAAAAGAGGTAAAA+GGG - chr8_2:19887488-19887507 Msa1238930:CDS 30.0%
!! GATAAATCTGATAGCTTTGT+TGG + chr8_2:19887559-19887578 None:intergenic 30.0%
! GTGCATTCTTTGAAAAACAA+GGG + chr8_2:19887588-19887607 None:intergenic 30.0%
! AGTGCATTCTTTGAAAAACA+AGG + chr8_2:19887589-19887608 None:intergenic 30.0%
AGTGATCTTGATGCATTAAT+TGG - chr8_2:19887712-19887731 Msa1238930:CDS 30.0%
!! TGTAGCTTGTTAACAAAAAC+TGG - chr8_2:19887760-19887779 Msa1238930:CDS 30.0%
TTAACAAAAACTGGTGTACT+TGG - chr8_2:19887769-19887788 Msa1238930:CDS 30.0%
ACTTTGCAATTCAATGTTTC+TGG - chr8_2:19887799-19887818 Msa1238930:CDS 30.0%
! AGAAGATGAGAAGAATGTTT+TGG - chr8_2:19887942-19887961 Msa1238930:CDS 30.0%
CTTAACAATGGAATGTTGTT+AGG - chr8_2:19888378-19888397 Msa1238930:CDS 30.0%
!!! GTTTTGAAATCAGGATCATT+AGG - chr8_2:19888618-19888637 Msa1238930:intron 30.0%
TGAGATGAAGAAAATGTTAG+GGG - chr8_2:19888689-19888708 Msa1238930:intron 30.0%
TCAAGCAATTGAACCAAATT+CGG + chr8_2:19888855-19888874 None:intergenic 30.0%
!!! TATTTTTTCGCAGTGTTTTG+TGG + chr8_2:19888885-19888904 None:intergenic 30.0%
CTTCTTGTAAGAAATGTAAG+AGG - chr8_2:19888931-19888950 Msa1238930:intron 30.0%
!! AAGAGGTTGATGATTTCATA+TGG - chr8_2:19888948-19888967 Msa1238930:intron 30.0%
ATGATTTCATATGGAGCAAT+AGG - chr8_2:19888957-19888976 Msa1238930:intron 30.0%
TGATTTCATATGGAGCAATA+GGG - chr8_2:19888958-19888977 Msa1238930:intron 30.0%
TTTGAAGAAGCTTATTGAGA+TGG - chr8_2:19888983-19889002 Msa1238930:intron 30.0%
GCTTGTTTAGCAGAAAATAA+TGG - chr8_2:19889060-19889079 Msa1238930:intron 30.0%
ACTAAAAGACAGTTGAAACA+TGG + chr8_2:19889093-19889112 None:intergenic 30.0%
AAAACTTGGTATTCGGTCTA+AGG - chr8_2:19886878-19886897 Msa1238930:exon 35.0%
GATTAGACTCTCGAATTAGT+CGG + chr8_2:19886905-19886924 None:intergenic 35.0%
TTTAGATGGGACCTTACAAA+TGG + chr8_2:19886935-19886954 None:intergenic 35.0%
AACTATACTATCTTCCACCA+TGG + chr8_2:19887395-19887414 None:intergenic 35.0%
TGCTCTTACAAAAGCAAAAG+AGG - chr8_2:19887480-19887499 Msa1238930:CDS 35.0%
AAAGAGGTAAAAGGGTTTCA+AGG - chr8_2:19887496-19887515 Msa1238930:CDS 35.0%
! CATTCTTTGAAAAACAAGGG+TGG + chr8_2:19887585-19887604 None:intergenic 35.0%
TTCAAAGAATGCACTTTGCA+AGG - chr8_2:19887594-19887613 Msa1238930:CDS 35.0%
!! ATTCCAAATGACCGATTTGA+AGG + chr8_2:19887882-19887901 None:intergenic 35.0%
!!! ATGTTTTGGCTGTTTTTTGC+AGG - chr8_2:19887956-19887975 Msa1238930:CDS 35.0%
AGCAACATCAACAAGGATAA+GGG - chr8_2:19888011-19888030 Msa1238930:CDS 35.0%
ATATGTTCTCTCGTTGAATC+AGG - chr8_2:19888051-19888070 Msa1238930:CDS 35.0%
!! GAAAACTGGTTAGTTTCTGA+AGG - chr8_2:19888084-19888103 Msa1238930:CDS 35.0%
! GATTCAACAAGCCTTATAAG+TGG + chr8_2:19888120-19888139 None:intergenic 35.0%
!! CTTATAAGGCTTGTTGAATC+AGG - chr8_2:19888120-19888139 Msa1238930:CDS 35.0%
! TAGTGCTGTTGCTAAAGAAA+AGG - chr8_2:19888143-19888162 Msa1238930:CDS 35.0%
! AGGCTATTGTTTCTCTTCAA+AGG - chr8_2:19888163-19888182 Msa1238930:CDS 35.0%
TCTTCAAAGGTTGTCTATGA+CGG - chr8_2:19888176-19888195 Msa1238930:CDS 35.0%
AGAAGGTCTGTTATATCAGA+AGG - chr8_2:19888459-19888478 Msa1238930:CDS 35.0%
TCTCAATTGAGCTACAAATC+CGG + chr8_2:19888674-19888693 None:intergenic 35.0%
AAGAAAATGTTAGGGGAAGT+TGG - chr8_2:19888696-19888715 Msa1238930:intron 35.0%
TCAAGCATGTTGATCAATAG+AGG + chr8_2:19888729-19888748 None:intergenic 35.0%
TCTATTGATCAACATGCTTG+AGG - chr8_2:19888728-19888747 Msa1238930:intron 35.0%
AAATCGAAGAGAGGTTAAGA+AGG - chr8_2:19888815-19888834 Msa1238930:intron 35.0%
TACAAGAAGAAAGTGATCCA+AGG + chr8_2:19888920-19888939 None:intergenic 35.0%
TTGCTTGAAAGATTGGAAAG+AGG - chr8_2:19889026-19889045 Msa1238930:intron 35.0%
TGCTTGAAAGATTGGAAAGA+GGG - chr8_2:19889027-19889046 Msa1238930:intron 35.0%
TAGCTTAGAATGTAAAACCG+TGG - chr8_2:19889189-19889208 Msa1238930:intron 35.0%
TAAGAGAAATACTCATGGGG+TGG - chr8_2:19886728-19886747 Msa1238930:three_prime_UTR 40.0%
GGACCTTACAAATGGACAAT+AGG + chr8_2:19886927-19886946 None:intergenic 40.0%
TTGGTATTATCTTGGGACCT+TGG + chr8_2:19887031-19887050 None:intergenic 40.0%
AGGTAAAAGGGTTTCAAGGT+AGG - chr8_2:19887500-19887519 Msa1238930:CDS 40.0%
TAAAAGGGTTTCAAGGTAGG+TGG - chr8_2:19887503-19887522 Msa1238930:CDS 40.0%
ACTTTGCAAGGAACAATTGC+AGG - chr8_2:19887606-19887625 Msa1238930:CDS 40.0%
GGAATCGAAACACAAAGCTT+TGG - chr8_2:19887897-19887916 Msa1238930:CDS 40.0%
TGCTTACAGCAACATCAACA+AGG - chr8_2:19888004-19888023 Msa1238930:CDS 40.0%
CAGCAACATCAACAAGGATA+AGG - chr8_2:19888010-19888029 Msa1238930:CDS 40.0%
! GTGTTTTGCCACCACTTATA+AGG - chr8_2:19888106-19888125 Msa1238930:CDS 40.0%
! TCAACAAGCCTTATAAGTGG+TGG + chr8_2:19888117-19888136 None:intergenic 40.0%
ATCTGACAAAGCTCGACTAA+CGG + chr8_2:19888243-19888262 None:intergenic 40.0%
! TTAGTCGAGCTTTGTCAGAT+TGG - chr8_2:19888243-19888262 Msa1238930:CDS 40.0%
GAAGAATATTTCGGCTGTTC+CGG - chr8_2:19888302-19888321 Msa1238930:CDS 40.0%
!!! AGACAGGTTTTAGCTGAAGA+AGG - chr8_2:19888330-19888349 Msa1238930:CDS 40.0%
!! AGCTGAAGAAGGTGTTGTTA+AGG - chr8_2:19888341-19888360 Msa1238930:CDS 40.0%
CAAGCAATGAGAATCTGAGA+AGG - chr8_2:19888442-19888461 Msa1238930:CDS 40.0%
AGGTCTGTTATATCAGAAGG+CGG - chr8_2:19888462-19888481 Msa1238930:CDS 40.0%
!! AGCATTCTGGCTTATCTTGA+TGG - chr8_2:19888492-19888511 Msa1238930:CDS 40.0%
ATTGAGGAATCTCGTTGCAT+CGG - chr8_2:19888545-19888564 Msa1238930:CDS 40.0%
AAGAGAAACCAGAGTTTCCT+CGG + chr8_2:19888574-19888593 None:intergenic 40.0%
! TGATAAAAGCGTGCCGAATT+TGG - chr8_2:19888839-19888858 Msa1238930:intron 40.0%
AAATACGCAGTATGTTGCCT+TGG - chr8_2:19888900-19888919 Msa1238930:intron 40.0%
CTTATTGAGATGGAGATTCC+AGG - chr8_2:19888993-19889012 Msa1238930:intron 40.0%
!!! TCAAGCAACTTTTTAGCTCC+TGG + chr8_2:19889014-19889033 None:intergenic 40.0%
! TACCAAGGTTTTGCATACCA+CGG + chr8_2:19889209-19889228 None:intergenic 40.0%
!! GACTAGCCTACCAATAGACT+CGG - chr8_2:19886976-19886995 Msa1238930:CDS 45.0%
! ACTAGCCTACCAATAGACTC+GGG - chr8_2:19886977-19886996 Msa1238930:CDS 45.0%
CAGGAGCAATGTTGTAGCTT+TGG - chr8_2:19887975-19887994 Msa1238930:CDS 45.0%
TGTTCTCTCGTTGAATCAGG+TGG - chr8_2:19888054-19888073 Msa1238930:CDS 45.0%
GCTAAAACCTGTCTCACTTC+CGG + chr8_2:19888324-19888343 None:intergenic 45.0%
TTATATCAGAAGGCGGCGTT+CGG - chr8_2:19888469-19888488 Msa1238930:CDS 45.0%
ACAGCAGATTCTTGAGGAAG+TGG + chr8_2:19888519-19888538 None:intergenic 45.0%
CTTCCTCAAGAATCTGCTGT+TGG - chr8_2:19888519-19888538 Msa1238930:CDS 45.0%
AATCTGCTGTTGGTGCATTG+AGG - chr8_2:19888529-19888548 Msa1238930:CDS 45.0%
AGAGAAACCAGAGTTTCCTC+GGG + chr8_2:19888573-19888592 None:intergenic 45.0%
! GAGGAAACTCTGGTTTCTCT+TGG - chr8_2:19888573-19888592 Msa1238930:CDS 45.0%
TCTGTCGCAAAATCGAAGAG+AGG - chr8_2:19888806-19888825 Msa1238930:intron 45.0%
! TTCGCAGTGTTTTGTGGACT+AGG + chr8_2:19888879-19888898 None:intergenic 45.0%
AACCGTGGTATGCAAAACCT+TGG - chr8_2:19889204-19889223 Msa1238930:intron 45.0%
ACTCATGGGGTGGCATCTTT+AGG - chr8_2:19886738-19886757 Msa1238930:three_prime_UTR 50.0%
CTAGCCTACCAATAGACTCG+GGG - chr8_2:19886978-19886997 Msa1238930:CDS 50.0%
TAGCCTACCAATAGACTCGG+GGG - chr8_2:19886979-19886998 Msa1238930:CDS 50.0%
GTTTGATCCCCCGAGTCTAT+TGG + chr8_2:19886989-19887008 None:intergenic 50.0%
TAGACTCGGGGGATCAAACT+TGG - chr8_2:19886990-19887009 Msa1238930:CDS 50.0%
AGACTCGGGGGATCAAACTT+GGG - chr8_2:19886991-19887010 Msa1238930:CDS 50.0%
GGGATCAAACTTGGGACCTT+GGG - chr8_2:19886999-19887018 Msa1238930:CDS 50.0%
GCGCCTTCAAATCGGTCATT+TGG - chr8_2:19887876-19887895 Msa1238930:CDS 50.0%
GCACCAACAGCAGATTCTTG+AGG + chr8_2:19888525-19888544 None:intergenic 50.0%
GATCCCCCGAGTCTATTGGT+AGG + chr8_2:19886985-19887004 None:intergenic 55.0%
GGGGATCAAACTTGGGACCT+TGG - chr8_2:19886998-19887017 Msa1238930:CDS 55.0%
CTACTCGCGCGCCTTCAAAT+CGG - chr8_2:19887868-19887887 Msa1238930:CDS 55.0%
CAGGTGGTAGCTGCGAAAAC+TGG - chr8_2:19888070-19888089 Msa1238930:CDS 55.0%
GACACAACTCGTGCGATCGT+CGG - chr8_2:19888201-19888220 Msa1238930:CDS 55.0%
! ATCGGTTCCCGAGGAAACTC+TGG - chr8_2:19888563-19888582 Msa1238930:CDS 55.0%
GCGCTGCGTCAGTTATATGC+CGG - chr8_2:19888652-19888671 Msa1238930:intron 55.0%
GGGACCTTGGGTACACTCCA+AGG - chr8_2:19887011-19887030 Msa1238930:CDS 60.0%
GGGACCTTGGAGTGTACCCA+AGG + chr8_2:19887018-19887037 None:intergenic 60.0%
ACTCGTGCGATCGTCGGACA+TGG - chr8_2:19888207-19888226 Msa1238930:CDS 60.0%
GTGCGATCGTCGGACATGGA+GGG - chr8_2:19888211-19888230 Msa1238930:CDS 60.0%
TGCGATCGTCGGACATGGAG+GGG - chr8_2:19888212-19888231 Msa1238930:CDS 60.0%
GGCTGTTCCGGAAGTGAGAC+AGG - chr8_2:19888314-19888333 Msa1238930:CDS 60.0%
!! TCTCGTTGCATCGGTTCCCG+AGG - chr8_2:19888554-19888573 Msa1238930:CDS 60.0%
CGTGCGATCGTCGGACATGG+AGG - chr8_2:19888210-19888229 Msa1238930:CDS 65.0%
! AGGCGGCGTTCGGAGCATTC+TGG - chr8_2:19888479-19888498 Msa1238930:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 19886677 19889298 19886677 ID=Msa1238930;Name=Msa1238930
chr8_2 mRNA 19886677 19889298 19886677 ID=Msa1238930-mRNA-1;Parent=Msa1238930;Name=Msa1238930-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0.5|0.5|1|1|2|219|580
chr8_2 exon 19886677 19888633 19886677 ID=Msa1238930-mRNA-1:exon:7318;Parent=Msa1238930-mRNA-1
chr8_2 exon 19889294 19889298 19889294 ID=Msa1238930-mRNA-1:exon:7317;Parent=Msa1238930-mRNA-1
chr8_2 CDS 19889294 19889298 19889294 ID=Msa1238930-mRNA-1:cds;Parent=Msa1238930-mRNA-1
chr8_2 CDS 19886896 19888633 19886896 ID=Msa1238930-mRNA-1:cds;Parent=Msa1238930-mRNA-1
chr8_2 three_prime_UTR 19886677 19886895 19886677 ID=Msa1238930-mRNA-1:three_prime_utr;Parent=Msa1238930-mRNA-1
Gene Sequence

>Msa1238930

ATGATCTTTGGTGATCATAATCATTTCTACAACATTACTCCTACAAATTTTCAAACCATGGTGGAAGATAGTATAGTTGCTGTCAAAGTTGATACATGTTCAACAGAAGAATGGTTGTTGAACTCACAAGAACTTGTTCCTATTGCTCTTACAAAAGCAAAAGAGGTAAAAGGGTTTCAAGGTAGGTGGAAAATGATCATTTCAAAATTGGAACAAGTTCCAACAAAGCTATCAGATTTATCAAGCCACCCTTGTTTTTCAAAGAATGCACTTTGCAAGGAACAATTGCAGGCTGTGTCAAAGACACTAAGAGAAGCTATTGAATTAGCTGAGTTATGTTTGAAAGAAAAGTATGAAGGAAAACTAAGAATGCAAAGTGATCTTGATGCATTAATTGGTAAGCTTGATTTGAATTTAAAGGATTGTAGCTTGTTAACAAAAACTGGTGTACTTGGTGAAGCTACTTTGCAATTCAATGTTTCTGGTTCTATAACAGAATCAGATATTGAAACACATTGCAATATAAAGGAGCTACTCGCGCGCCTTCAAATCGGTCATTTGGAATCGAAACACAAAGCTTTGGATAGACTTCATGATATTATGAGAGAAGATGAGAAGAATGTTTTGGCTGTTTTTTGCAGGAGCAATGTTGTAGCTTTGGTTCAGTTGCTTACAGCAACATCAACAAGGATAAGGGAGAAAACAGTTAGTATTATATGTTCTCTCGTTGAATCAGGTGGTAGCTGCGAAAACTGGTTAGTTTCTGAAGGTGTTTTGCCACCACTTATAAGGCTTGTTGAATCAGGTAGTGCTGTTGCTAAAGAAAAGGCTATTGTTTCTCTTCAAAGGTTGTCTATGACGGAAGACACAACTCGTGCGATCGTCGGACATGGAGGGGTTCGTCCGTTAGTCGAGCTTTGTCAGATTGGTGATTCTGTTTCACAATCTGCAGCTGCTTGTACTTTGAAGAATATTTCGGCTGTTCCGGAAGTGAGACAGGTTTTAGCTGAAGAAGGTGTTGTTAAGGTTATGATCAATCTTCTTAACAATGGAATGTTGTTAGGAACTAAAGAGTATGCTGCTGAGTGTTTGCAGAATCTGACTGCAAGCAATGAGAATCTGAGAAGGTCTGTTATATCAGAAGGCGGCGTTCGGAGCATTCTGGCTTATCTTGATGGTCCACTTCCTCAAGAATCTGCTGTTGGTGCATTGAGGAATCTCGTTGCATCGGTTCCCGAGGAAACTCTGGTTTCTCTTGGATTGCTTCCTTGTTTAGTTCATGTTTTGAAATCAGGATCATTAGGTGCGAAACAATGCGCTGCGTCAGTTATATGCCGGATTTGTAGCTCAATTGAGATGAAGAAAATGTTAGGGGAAGTTGGTTGCATTCCTCTATTGATCAACATGCTTGAGGCTAAAGCAAACACTGCAAGAGAACTTGCTGCACAAGCAATTGCAAGCTTGATGATTCTGTCGCAAAATCGAAGAGAGGTTAAGAAGGATGATAAAAGCGTGCCGAATTTGGTTCAATTGCTTGATCCTAGTCCACAAAACACTGCGAAAAAATACGCAGTATGTTGCCTTGGATCACTTTCTTCTTGTAAGAAATGTAAGAGGTTGATGATTTCATATGGAGCAATAGGGTATTTGAAGAAGCTTATTGAGATGGAGATTCCAGGAGCTAAAAAGTTGCTTGAAAGATTGGAAAGAGGGAAATTGAGAAGCTTGTTTAGCAGAAAATAA

Protein sequence

>Msa1238930

MIFGDHNHFYNITPTNFQTMVEDSIVAVKVDTCSTEEWLLNSQELVPIALTKAKEVKGFQGRWKMIISKLEQVPTKLSDLSSHPCFSKNALCKEQLQAVSKTLREAIELAELCLKEKYEGKLRMQSDLDALIGKLDLNLKDCSLLTKTGVLGEATLQFNVSGSITESDIETHCNIKELLARLQIGHLESKHKALDRLHDIMREDEKNVLAVFCRSNVVALVQLLTATSTRIREKTVSIICSLVESGGSCENWLVSEGVLPPLIRLVESGSAVAKEKAIVSLQRLSMTEDTTRAIVGHGGVRPLVELCQIGDSVSQSAAACTLKNISAVPEVRQVLAEEGVVKVMINLLNNGMLLGTKEYAAECLQNLTASNENLRRSVISEGGVRSILAYLDGPLPQESAVGALRNLVASVPEETLVSLGLLPCLVHVLKSGSLGAKQCAASVICRICSSIEMKKMLGEVGCIPLLINMLEAKANTARELAAQAIASLMILSQNRREVKKDDKSVPNLVQLLDPSPQNTAKKYAVCCLGSLSSCKKCKRLMISYGAIGYLKKLIEMEIPGAKKLLERLERGKLRSLFSRK*