Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409820 | XP_003595066.1 | 97.306 | 297 | 6 | 2 | 1 | 296 | 1 | 296 | 0.0 | 569 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409820 | G7IG80 | 97.306 | 297 | 6 | 2 | 1 | 296 | 1 | 296 | 0.0 | 569 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1385860 | Msa1409820 | 0.809177 | 2.152280e-50 | -8.615850e-47 |
| Msa1409820 | Msa1444430 | 0.846953 | 1.570490e-59 | -8.615850e-47 |
| Msa0766100 | Msa1409820 | 0.819371 | 1.202839e-52 | -8.615850e-47 |
| Msa0283270 | Msa1409820 | 0.838694 | 2.470029e-57 | -8.615850e-47 |
| Msa0283570 | Msa1409820 | 0.849728 | 2.684116e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409820 | MtrunA17_Chr2g0298661 | 96.980 | 298 | 6 | 3 | 1 | 296 | 1 | 297 | 0.0 | 565 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409820 | AT4G29960.1 | 61.818 | 275 | 86 | 7 | 25 | 293 | 28 | 289 | 8.50e-97 | 287 |
Find 136 sgRNAs with CRISPR-Local
Find 327 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTGCCTCTGCCAGCTTC+TGG | 0.083546 | tig0023574:+2266 | None:intergenic |
| GAAGTAAACGGCACCGTTTC+GGG | 0.219216 | tig0023574:+6143 | None:intergenic |
| GTAGTTTGATTGATAAATTT+AGG | 0.230333 | tig0023574:+6182 | None:intergenic |
| TGCTGCTGCCGGTGAAAATC+AGG | 0.245689 | tig0023574:-3573 | Msa1409820:CDS |
| GCTATACACCTTATCATATT+CGG | 0.263262 | tig0023574:+2102 | None:intergenic |
| TCAGCCCTGGCTGCAGGTCT+TGG | 0.293292 | tig0023574:+2673 | None:intergenic |
| TAGTTTGATTGATAAATTTA+GGG | 0.301230 | tig0023574:+6183 | None:intergenic |
| CATTGCCTCTGCCAGCTTCT+GGG | 0.309185 | tig0023574:+2267 | None:intergenic |
| TTTATCGCTTCCCTGCTTCC+TGG | 0.312219 | tig0023574:-2191 | Msa1409820:CDS |
| GTCATAACTAATACATATTT+AGG | 0.314953 | tig0023574:-2063 | Msa1409820:three_prime_UTR |
| AACTATGGTGATAGTTTATA+AGG | 0.327975 | tig0023574:-2014 | Msa1409820:three_prime_UTR |
| TGAAGTAAACGGCACCGTTT+CGG | 0.333462 | tig0023574:+6142 | None:intergenic |
| ATGCACCCTGCATTGATTCC+AGG | 0.344373 | tig0023574:-5212 | Msa1409820:CDS |
| CTATACACCTTATCATATTC+GGG | 0.352459 | tig0023574:+2103 | None:intergenic |
| TTCCAATTTGCCGGCCTATC+CGG | 0.357512 | tig0023574:-5261 | Msa1409820:CDS |
| TGCGGTAAGTCAATGGAATC+AGG | 0.360834 | tig0023574:+5084 | None:intergenic |
| CAAGAACAGCGAATAAAATA+AGG | 0.361508 | tig0023574:+3390 | None:intergenic |
| GAAATGAAAATTTAACTCAT+TGG | 0.365391 | tig0023574:+6273 | None:intergenic |
| TGTCTATCAAAAGGATTAAC+AGG | 0.366467 | tig0023574:+5131 | None:intergenic |
| AGCCGGATAGGCCGGCAAAT+TGG | 0.371911 | tig0023574:+5259 | None:intergenic |
| CTTCAATTCATTTAATTGTC+GGG | 0.378946 | tig0023574:-1833 | Msa1409820:three_prime_UTR |
| GTGACAGCATACCAGAAAAT+AGG | 0.391212 | tig0023574:-2136 | Msa1409820:three_prime_UTR |
| GGATATTACCAAATGTTTCC+TGG | 0.393625 | tig0023574:-5236 | Msa1409820:CDS |
| GCCTCTGCCTTGATCCATCT+TGG | 0.399332 | tig0023574:+3420 | None:intergenic |
| CCCTGGTGTCTGTTTATGAT+TGG | 0.401189 | tig0023574:-1888 | Msa1409820:three_prime_UTR |
| TCCTGGGTTCCACAATCATA+TGG | 0.403844 | tig0023574:-2174 | Msa1409820:CDS |
| AATTTAACTCATTGGATTTG+AGG | 0.421789 | tig0023574:+6281 | None:intergenic |
| TTGGCAACCACCTGCCCTGC+AGG | 0.422864 | tig0023574:+2640 | None:intergenic |
| GTCCACCAAGACCTGCAGCC+AGG | 0.426345 | tig0023574:-2678 | Msa1409820:CDS |
| TTCACTTACCCCACTCTAGA+AGG | 0.427018 | tig0023574:+1698 | None:intergenic |
| TCCAGCAGAAAACAAAACTA+TGG | 0.430644 | tig0023574:-2029 | Msa1409820:three_prime_UTR |
| CCTTCAATTCATTTAATTGT+CGG | 0.431451 | tig0023574:-1834 | Msa1409820:three_prime_UTR |
| TTTAATTGTCGGGAGTTTGT+CGG | 0.437137 | tig0023574:-1823 | Msa1409820:three_prime_UTR |
| CCGACAATTAAATGAATTGA+AGG | 0.437652 | tig0023574:+1834 | None:intergenic |
| ACTTCTGAAGCTGCTGCTGC+CGG | 0.440502 | tig0023574:-3584 | Msa1409820:CDS |
| TTATCGCTTCCCTGCTTCCT+GGG | 0.445722 | tig0023574:-2190 | Msa1409820:CDS |
| GAACCTGCGAACCGTGGAGC+TGG | 0.451209 | tig0023574:-5167 | Msa1409820:CDS |
| TGGTTCTCAATGGCAGCATC+AGG | 0.451911 | tig0023574:+2332 | None:intergenic |
| CTCTGAGGTGCAGGCTGCTG+AGG | 0.452932 | tig0023574:+3530 | None:intergenic |
| ATCAATGCAGGGTGCATACC+AGG | 0.458389 | tig0023574:+5218 | None:intergenic |
| AATGGAATCAGGGTGTTGTA+TGG | 0.461274 | tig0023574:+5095 | None:intergenic |
| GCCCTGGCTGCAGGTCTTGG+TGG | 0.464321 | tig0023574:+2676 | None:intergenic |
| GCAATGGTGGCAACCAGTGG+TGG | 0.470017 | tig0023574:-2250 | Msa1409820:CDS |
| TGTGAAAGCCATCTTACAAT+CGG | 0.470728 | tig0023574:+2730 | None:intergenic |
| CCGGTAACATGTCTATCAAA+AGG | 0.474598 | tig0023574:+5122 | None:intergenic |
| GATTGTGGAACCCAGGAAGC+AGG | 0.475098 | tig0023574:+2180 | None:intergenic |
| GCAGCAGCAGCTTCAGAAGT+TGG | 0.476019 | tig0023574:+3587 | None:intergenic |
| TTCGCAGGTTCCTCAATTTG+TGG | 0.476969 | tig0023574:+5179 | None:intergenic |
| GGTGCATACCAGGAAACATT+TGG | 0.481967 | tig0023574:+5228 | None:intergenic |
| AATTTGCCGGCCTATCCGGC+TGG | 0.485860 | tig0023574:-5257 | Msa1409820:CDS |
| CAGGGTGTTGTATGGAAGTC+CGG | 0.489052 | tig0023574:+5103 | None:intergenic |
| TGTTCAACCAAGATGGATCA+AGG | 0.490896 | tig0023574:-3427 | Msa1409820:CDS |
| CCAGAAGCTGGCAGAGGCAA+TGG | 0.491181 | tig0023574:-2266 | Msa1409820:CDS |
| GTTGCCAATGCTCCTCCAGC+AGG | 0.493494 | tig0023574:-2625 | Msa1409820:intron |
| CTCAGAGACAAGTTGTTGTA+AGG | 0.495844 | tig0023574:-3514 | Msa1409820:CDS |
| AAATGTACCTCCTGCAGGGC+AGG | 0.497728 | tig0023574:-2650 | Msa1409820:CDS |
| AATGAGAATGTCCCAGAAGC+TGG | 0.502270 | tig0023574:-2278 | Msa1409820:CDS |
| GCACGGTCTGCACCATTACC+AGG | 0.502582 | tig0023574:+2308 | None:intergenic |
| GGCAGAAAACGCTCCCGAAA+CGG | 0.503125 | tig0023574:-6156 | Msa1409820:CDS |
| CAATGGTGGCAACCAGTGGT+GGG | 0.503431 | tig0023574:-2249 | Msa1409820:CDS |
| TGCACCCTGCATTGATTCCA+GGG | 0.504551 | tig0023574:-5211 | Msa1409820:CDS |
| TCCACCAAGACCTGCAGCCA+GGG | 0.504594 | tig0023574:-2677 | Msa1409820:CDS |
| GCTGAAAATGTACCTCCTGC+AGG | 0.507702 | tig0023574:-2655 | Msa1409820:CDS |
| CAAATTACTTCCCTGTGCCC+TGG | 0.507886 | tig0023574:+1939 | None:intergenic |
| GCTGCAGGTCTTGGTGGACG+AGG | 0.508079 | tig0023574:+2682 | None:intergenic |
| AGCTATGGTGCCTTCTAGAG+TGG | 0.508558 | tig0023574:-1708 | Msa1409820:three_prime_UTR |
| TGGGGTAAGTGAACTGATAG+TGG | 0.510555 | tig0023574:-1688 | Msa1409820:three_prime_UTR |
| GTCAACCCTGGAATCAATGC+AGG | 0.510845 | tig0023574:+5206 | None:intergenic |
| CCGGCAAATTGGAAAATGTC+GGG | 0.512491 | tig0023574:+5270 | None:intergenic |
| GCTGCTGCCGGTGAAAATCA+GGG | 0.513650 | tig0023574:-3572 | Msa1409820:CDS |
| AAGCCAGCTCCACGGTTCGC+AGG | 0.514593 | tig0023574:+5164 | None:intergenic |
| GAAGTAATTTGTACTTCAGA+GGG | 0.516768 | tig0023574:-1927 | Msa1409820:three_prime_UTR |
| ACAACTTGTCTCTGAGGTGC+AGG | 0.518547 | tig0023574:+3521 | None:intergenic |
| CTCTGACACCGATTGTAAGA+TGG | 0.519517 | tig0023574:-2738 | Msa1409820:CDS |
| CCTTTACAATGCCCCACCAC+TGG | 0.522720 | tig0023574:+2237 | None:intergenic |
| TCGGTGTCAGAGCTCCAGTT+TGG | 0.523774 | tig0023574:+2749 | None:intergenic |
| ATGTGTTACAGATACCAAAC+TGG | 0.523883 | tig0023574:-2763 | Msa1409820:intron |
| TTTGCTACTTATGTTGAAGC+TGG | 0.525091 | tig0023574:-3465 | Msa1409820:CDS |
| GGCAGTTGTTAATCCACCCC+TGG | 0.528965 | tig0023574:-1905 | Msa1409820:three_prime_UTR |
| GTAGGTGTGCGGTAAGTCAA+TGG | 0.530263 | tig0023574:+5077 | None:intergenic |
| CATACCTGCTGGAGGAGCAT+TGG | 0.530298 | tig0023574:+2621 | None:intergenic |
| GGAAGAGGTTGTGAAGTAAA+CGG | 0.534561 | tig0023574:+6131 | None:intergenic |
| GAAGAGGAAGAAGGTGGAAG+AGG | 0.536692 | tig0023574:+6116 | None:intergenic |
| CATTCTCATTCTCGATTGCA+CGG | 0.538860 | tig0023574:+2291 | None:intergenic |
| CCAGTGGTGGGGCATTGTAA+AGG | 0.540989 | tig0023574:-2237 | Msa1409820:CDS |
| ATTGCAAAACCTACCTGAGA+TGG | 0.541041 | tig0023574:+6074 | None:intergenic |
| GGAAGTAATTTGTACTTCAG+AGG | 0.541496 | tig0023574:-1928 | Msa1409820:three_prime_UTR |
| GTTGACTCCACCACAAATTG+AGG | 0.541577 | tig0023574:-5189 | Msa1409820:CDS |
| AATGGTGGCAACCAGTGGTG+GGG | 0.541711 | tig0023574:-2248 | Msa1409820:CDS |
| ATTGAGAACCAGCCTGGTAA+TGG | 0.544812 | tig0023574:-2320 | Msa1409820:CDS |
| TAATATCCAGCCGGATAGGC+CGG | 0.549385 | tig0023574:+5251 | None:intergenic |
| ATTACCAGGCTGGTTCTCAA+TGG | 0.550682 | tig0023574:+2322 | None:intergenic |
| TTGGTAATATCCAGCCGGAT+AGG | 0.559088 | tig0023574:+5247 | None:intergenic |
| ATCGCCACAAGATCCATCTC+AGG | 0.560810 | tig0023574:-6087 | Msa1409820:intron |
| GCAGGTTCCTCAATTTGTGG+TGG | 0.561832 | tig0023574:+5182 | None:intergenic |
| ATTGTGGAACCCAGGAAGCA+GGG | 0.566256 | tig0023574:+2181 | None:intergenic |
| AACATTTGGTAATATCCAGC+CGG | 0.568144 | tig0023574:+5242 | None:intergenic |
| GCCGGCAAATTGGAAAATGT+CGG | 0.569653 | tig0023574:+5269 | None:intergenic |
| CTGCTGCCGGTGAAAATCAG+GGG | 0.574488 | tig0023574:-3571 | Msa1409820:CDS |
| ACCAAGATGGATCAAGGCAG+AGG | 0.574890 | tig0023574:-3421 | Msa1409820:CDS |
| ATTTGTGGTGGAGTCAACCC+TGG | 0.577781 | tig0023574:+5194 | None:intergenic |
| GCTATGGTGCCTTCTAGAGT+GGG | 0.580934 | tig0023574:-1707 | Msa1409820:three_prime_UTR |
| GAGGCAATGGTGGCAACCAG+TGG | 0.581630 | tig0023574:-2253 | Msa1409820:CDS |
| TTTCTGCAAAACATGAGCTA+TGG | 0.581697 | tig0023574:-1723 | Msa1409820:three_prime_UTR |
| AATGTCCCAGAAGCTGGCAG+AGG | 0.582269 | tig0023574:-2272 | Msa1409820:CDS |
| GAAGCTGGCAGAGGCAATGG+TGG | 0.582333 | tig0023574:-2263 | Msa1409820:CDS |
| GATTTCTGCGAAGAGGAAGA+AGG | 0.583027 | tig0023574:+6107 | None:intergenic |
| TCCATATGATTGTGGAACCC+AGG | 0.583039 | tig0023574:+2173 | None:intergenic |
| CTGAAAATGTACCTCCTGCA+GGG | 0.583817 | tig0023574:-2654 | Msa1409820:CDS |
| ACCAATCATAAACAGACACC+AGG | 0.588818 | tig0023574:+1887 | None:intergenic |
| TGTACCTCCTGCAGGGCAGG+TGG | 0.590447 | tig0023574:-2647 | Msa1409820:CDS |
| CCTACCTGAGATGGATCTTG+TGG | 0.606580 | tig0023574:+6083 | None:intergenic |
| GCAACCACCTGCCCTGCAGG+AGG | 0.610954 | tig0023574:+2643 | None:intergenic |
| GCAGGTCTTGGTGGACGAGG+AGG | 0.611372 | tig0023574:+2685 | None:intergenic |
| GGTCTGCACCATTACCAGGC+TGG | 0.611992 | tig0023574:+2312 | None:intergenic |
| TTTATGGCTTCCAGGGCACA+GGG | 0.614928 | tig0023574:-1949 | Msa1409820:three_prime_UTR |
| ATTTATCAATCAAACTACAA+TGG | 0.620548 | tig0023574:-6177 | Msa1409820:exon |
| GCTGCCATTGAGAACCAGCC+TGG | 0.626238 | tig0023574:-2326 | Msa1409820:CDS |
| TAAGTCAATCCATATGATTG+TGG | 0.631095 | tig0023574:+2165 | None:intergenic |
| TTGTGGCGATTTCTGCGAAG+AGG | 0.631216 | tig0023574:+6100 | None:intergenic |
| GCGGTAAGTCAATGGAATCA+GGG | 0.639590 | tig0023574:+5085 | None:intergenic |
| ATTGAGGAACCTGCGAACCG+TGG | 0.639776 | tig0023574:-5173 | Msa1409820:CDS |
| GCATACCAGAAAATAGGAGA+GGG | 0.647009 | tig0023574:-2130 | Msa1409820:three_prime_UTR |
| TTCTGCGAAGAGGAAGAAGG+TGG | 0.656951 | tig0023574:+6110 | None:intergenic |
| TCATAAACAGACACCAGGGG+TGG | 0.659478 | tig0023574:+1892 | None:intergenic |
| AGCATACCAGAAAATAGGAG+AGG | 0.665811 | tig0023574:-2131 | Msa1409820:three_prime_UTR |
| CTTACAACAACTTGTCTCTG+AGG | 0.667166 | tig0023574:+3515 | None:intergenic |
| CAGCATATAAGCCAGCTCCA+CGG | 0.674149 | tig0023574:+5156 | None:intergenic |
| TCAACCCTGGAATCAATGCA+GGG | 0.679896 | tig0023574:+5207 | None:intergenic |
| AAGCAAATCATACCTGCTGG+AGG | 0.681082 | tig0023574:+2613 | None:intergenic |
| CTATGGTGCCTTCTAGAGTG+GGG | 0.682581 | tig0023574:-1706 | Msa1409820:three_prime_UTR |
| AATTGTCGGGAGTTTGTCGG+CGG | 0.695279 | tig0023574:-1820 | Msa1409820:three_prime_UTR |
| AAGCCACTTACGTAGGTGTG+CGG | 0.702356 | tig0023574:+5066 | None:intergenic |
| CAATCATAAACAGACACCAG+GGG | 0.720298 | tig0023574:+1889 | None:intergenic |
| AAGTAATTTGTACTTCAGAG+GGG | 0.729284 | tig0023574:-1926 | Msa1409820:three_prime_UTR |
| CCAATCATAAACAGACACCA+GGG | 0.734719 | tig0023574:+1888 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTATTATAAATACTAAAT+AGG | - | tig0023574:2251-2270 | Msa1409820:CDS | 10.0% |
| !! | GTTATTATAAATACTAAATA+GGG | - | tig0023574:2252-2271 | Msa1409820:CDS | 10.0% |
| !! | ACATATATATATATATATTG+TGG | - | tig0023574:2534-2553 | Msa1409820:intron | 10.0% |
| !! | ATATATTTATACCTTTATAT+AGG | - | tig0023574:3116-3135 | Msa1409820:intron | 10.0% |
| !!! | ATTTTAAACAATTCATTTTT+TGG | - | tig0023574:4281-4300 | Msa1409820:intron | 10.0% |
| !!! | TTTTAAACAATTCATTTTTT+GGG | - | tig0023574:4282-4301 | Msa1409820:intron | 10.0% |
| !!! | TTTAACAAAATAGATTTTTA+TGG | - | tig0023574:4903-4922 | Msa1409820:intron | 10.0% |
| !!! | TGTATAATTTTTTAATTGAT+AGG | - | tig0023574:6242-6261 | Msa1409820:five_prime_UTR | 10.0% |
| !!! | TTTTTTAGATTTGAGATTTT+TGG | + | tig0023574:1758-1777 | None:intergenic | 15.0% |
| !! | TAGTTTGATTGATAAATTTA+GGG | + | tig0023574:1811-1830 | None:intergenic | 15.0% |
| !! | AAATAGAAAAAATTTCAAGA+TGG | - | tig0023574:2142-2161 | Msa1409820:three_prime_UTR | 15.0% |
| !! | AATAGAAAAAATTTCAAGAT+GGG | - | tig0023574:2143-2162 | Msa1409820:three_prime_UTR | 15.0% |
| !! | ACAAAAAAAAATGCTAAATT+AGG | + | tig0023574:2198-2217 | None:intergenic | 15.0% |
| !!! | ATTGTTATTTGTTATTAAAG+AGG | - | tig0023574:2310-2329 | Msa1409820:CDS | 15.0% |
| !!! | TCATTTTATTAAATTATCAC+AGG | - | tig0023574:2430-2449 | Msa1409820:intron | 15.0% |
| !! | TGTCAAAATATAAAATAGAA+AGG | - | tig0023574:3577-3596 | Msa1409820:CDS | 15.0% |
| !!! | TTTTGGTATAATATTTGATT+AGG | - | tig0023574:3778-3797 | Msa1409820:intron | 15.0% |
| !!! | TTTAACGTATTTAATTTTAG+TGG | - | tig0023574:4317-4336 | Msa1409820:intron | 15.0% |
| !!! | GAAAAAAGTGATTTTTTTAA+GGG | + | tig0023574:4728-4747 | None:intergenic | 15.0% |
| !!! | TGAAAAAAGTGATTTTTTTA+AGG | + | tig0023574:4729-4748 | None:intergenic | 15.0% |
| !! | AATTGAATAGACAATAATAA+GGG | + | tig0023574:5106-5125 | None:intergenic | 15.0% |
| !! | AAATTGAATAGACAATAATA+AGG | + | tig0023574:5107-5126 | None:intergenic | 15.0% |
| !! | GAAATGAAAATTTAACTCAT+TGG | + | tig0023574:1721-1740 | None:intergenic | 20.0% |
| !! | GTAGTTTGATTGATAAATTT+AGG | + | tig0023574:1812-1831 | None:intergenic | 20.0% |
| !! | ATTTATCAATCAAACTACAA+TGG | - | tig0023574:1814-1833 | Msa1409820:three_prime_UTR | 20.0% |
| !! | AATCAATTAAACGAACAATT+AGG | + | tig0023574:1979-1998 | None:intergenic | 20.0% |
| !!! | TTTTTCTATTTCGCTTAAAT+TGG | + | tig0023574:2133-2152 | None:intergenic | 20.0% |
| !!! | TAAATAGGGTTTTAAATAGA+GGG | - | tig0023574:2266-2285 | Msa1409820:CDS | 20.0% |
| !!! | GTAAAAAGGGTATAAAATAA+AGG | + | tig0023574:2579-2598 | None:intergenic | 20.0% |
| !!! | AGCATATTTTATAGCTTTTT+TGG | - | tig0023574:3082-3101 | Msa1409820:intron | 20.0% |
| !!! | ATTTTGTAACATGGATATAT+TGG | - | tig0023574:3197-3216 | Msa1409820:intron | 20.0% |
| !! | GATATATTGGAAAATACATT+AGG | - | tig0023574:3210-3229 | Msa1409820:intron | 20.0% |
| !! | TTTGTAATTAAATGTGAAAC+AGG | + | tig0023574:3339-3358 | None:intergenic | 20.0% |
| !! | ATTATACCAAAAAACTATAG+TGG | + | tig0023574:3770-3789 | None:intergenic | 20.0% |
| !! | TAATAGGTCATATTTGTAAA+AGG | - | tig0023574:3999-4018 | Msa1409820:intron | 20.0% |
| !!! | TAGTAATGCTTTTTTTTAAC+TGG | - | tig0023574:4360-4379 | Msa1409820:intron | 20.0% |
| !!! | AGTAATGCTTTTTTTTAACT+GGG | - | tig0023574:4361-4380 | Msa1409820:intron | 20.0% |
| !!! | TGAAAAAAATCTGAAACAAA+CGG | + | tig0023574:4688-4707 | None:intergenic | 20.0% |
| !!! | TCATTTTTAAGTGTTTGTTT+AGG | - | tig0023574:4746-4765 | Msa1409820:intron | 20.0% |
| !!! | ATCTATTTTTTTCAACAACA+AGG | - | tig0023574:4848-4867 | Msa1409820:intron | 20.0% |
| !!! | AATAGATTTTTATGGATAGT+AGG | - | tig0023574:4911-4930 | Msa1409820:intron | 20.0% |
| !! | ATTGAATAGACAATAATAAG+GGG | + | tig0023574:5105-5124 | None:intergenic | 20.0% |
| !! | GTCATAACTAATACATATTT+AGG | - | tig0023574:5928-5947 | Msa1409820:intron | 20.0% |
| ! | AATTTAACTCATTGGATTTG+AGG | + | tig0023574:1713-1732 | None:intergenic | 25.0% |
| ! | GAGTTTAATTGCATCAAAAT+GGG | + | tig0023574:2021-2040 | None:intergenic | 25.0% |
| ! | TGAGTTTAATTGCATCAAAA+TGG | + | tig0023574:2022-2041 | None:intergenic | 25.0% |
| !!! | CTAAATAGGGTTTTAAATAG+AGG | - | tig0023574:2265-2284 | Msa1409820:CDS | 25.0% |
| !!! | TTTGTTATTAAAGAGGAATG+TGG | - | tig0023574:2317-2336 | Msa1409820:CDS | 25.0% |
| ! | AAGCACAAAATGTGTAAAAA+GGG | + | tig0023574:2592-2611 | None:intergenic | 25.0% |
| ! | TTGCTTTGTAAATATGTGAA+TGG | - | tig0023574:2610-2629 | Msa1409820:intron | 25.0% |
| ! | TGCTTTGTAAATATGTGAAT+GGG | - | tig0023574:2611-2630 | Msa1409820:intron | 25.0% |
| ! | TTCTGAATTCATGTGTTAAA+TGG | - | tig0023574:2662-2681 | Msa1409820:CDS | 25.0% |
| !! | TTTAAGCGAATTTTGTAACA+TGG | - | tig0023574:3188-3207 | Msa1409820:intron | 25.0% |
| ! | AGTAAAAAAGGAAAGAGAAA+TGG | + | tig0023574:3709-3728 | None:intergenic | 25.0% |
| ! | ATAGTCGAATCAAGTAAAAA+AGG | + | tig0023574:3721-3740 | None:intergenic | 25.0% |
| !!! | TGTTATCCACTATAGTTTTT+TGG | - | tig0023574:3761-3780 | Msa1409820:intron | 25.0% |
| ! | CAAAGAACTTCAAAAGAATA+TGG | + | tig0023574:4153-4172 | None:intergenic | 25.0% |
| !! | GAAAAAAATCTGAAACAAAC+GGG | + | tig0023574:4687-4706 | None:intergenic | 25.0% |
| !! | CCTAATAGCTTTTCATTTTA+GGG | + | tig0023574:4812-4831 | None:intergenic | 25.0% |
| !! | TCCTAATAGCTTTTCATTTT+AGG | + | tig0023574:4813-4832 | None:intergenic | 25.0% |
| !! | ACCGTTTATTAATTTCCTTT+TGG | - | tig0023574:5514-5533 | Msa1409820:intron | 25.0% |
| ! | CCCAAAAGGAAATTAATAAA+CGG | + | tig0023574:5518-5537 | None:intergenic | 25.0% |
| !! | CCGTTTATTAATTTCCTTTT+GGG | - | tig0023574:5515-5534 | Msa1409820:intron | 25.0% |
| !!! | TTATTAATTTCCTTTTGGGA+TGG | - | tig0023574:5519-5538 | Msa1409820:intron | 25.0% |
| !!! | TATTAATTTCCTTTTGGGAT+GGG | - | tig0023574:5520-5539 | Msa1409820:intron | 25.0% |
| ! | CAATAGTTAATGACAAACAA+AGG | + | tig0023574:5627-5646 | None:intergenic | 25.0% |
| !! | CTTTGTTTGTCATTAACTAT+TGG | - | tig0023574:5625-5644 | Msa1409820:intron | 25.0% |
| ! | TAAATCCAAAAACAATCATC+TGG | + | tig0023574:5784-5803 | None:intergenic | 25.0% |
| ! | AACTATGGTGATAGTTTATA+AGG | - | tig0023574:5977-5996 | Msa1409820:intron | 25.0% |
| !!! | GTCATTTTTGTATCATTACT+TGG | - | tig0023574:6001-6020 | Msa1409820:intron | 25.0% |
| !!! | TGTTGATAGAACAGTTTTTA+TGG | - | tig0023574:6026-6045 | Msa1409820:intron | 25.0% |
| ! | CCTTCAATTCATTTAATTGT+CGG | - | tig0023574:6157-6176 | Msa1409820:CDS | 25.0% |
| ! | CTTCAATTCATTTAATTGTC+GGG | - | tig0023574:6158-6177 | Msa1409820:CDS | 25.0% |
| ! | TAAAAAATTATACAGCACTC+AGG | + | tig0023574:6236-6255 | None:intergenic | 25.0% |
| !!! | AGATTTTTGGTAGTTGAAGA+AGG | + | tig0023574:1745-1764 | None:intergenic | 30.0% |
| TAATTGCATCAAAATGGGTA+TGG | + | tig0023574:2016-2035 | None:intergenic | 30.0% | |
| ATGCAATTAAACTCAAGCTA+GGG | - | tig0023574:2027-2046 | Msa1409820:three_prime_UTR | 30.0% | |
| TAGGTTGTTAGCACATAAAA+TGG | + | tig0023574:2179-2198 | None:intergenic | 30.0% | |
| TTTAATGTAATCACGTGTCA+TGG | + | tig0023574:2405-2424 | None:intergenic | 30.0% | |
| CAAGCACAAAATGTGTAAAA+AGG | + | tig0023574:2593-2612 | None:intergenic | 30.0% | |
| TGAATTCATGTGTTAAATGG+TGG | - | tig0023574:2665-2684 | Msa1409820:CDS | 30.0% | |
| TGTCTATCAAAAGGATTAAC+AGG | + | tig0023574:2863-2882 | None:intergenic | 30.0% | |
| ATCACTAAGTTTCACATACA+AGG | + | tig0023574:3019-3038 | None:intergenic | 30.0% | |
| TTTATACCTTTATATAGGCC+CGG | - | tig0023574:3121-3140 | Msa1409820:intron | 30.0% | |
| GAAATAAAGTGAAAACAACG+TGG | + | tig0023574:3368-3387 | None:intergenic | 30.0% | |
| TAGAAATATCATGGTCTGTT+TGG | + | tig0023574:3507-3526 | None:intergenic | 30.0% | |
| AAACAGACCATGATATTTCT+AGG | - | tig0023574:3506-3525 | Msa1409820:CDS | 30.0% | |
| TGAAAGTCCTAGAAATATCA+TGG | + | tig0023574:3516-3535 | None:intergenic | 30.0% | |
| ! | TAGGACTTTCAATATTGACT+GGG | - | tig0023574:3525-3544 | Msa1409820:CDS | 30.0% |
| CAATGGTTATTGTGCTTATT+TGG | - | tig0023574:3552-3571 | Msa1409820:CDS | 30.0% | |
| !! | TGTCAGACATAATGGTTTTA+TGG | - | tig0023574:3669-3688 | Msa1409820:intron | 30.0% |
| ! | TCACATGATGACTTCTAAAA+GGG | - | tig0023574:3904-3923 | Msa1409820:intron | 30.0% |
| ATTTATTACAAACTCTGTCC+AGG | + | tig0023574:3975-3994 | None:intergenic | 30.0% | |
| TCTAAGCATTCAAGGAAAAT+TGG | - | tig0023574:4030-4049 | Msa1409820:intron | 30.0% | |
| TGATCATATAAGAATGCCTA+AGG | + | tig0023574:4111-4130 | None:intergenic | 30.0% | |
| GAAGTTCTTTGTTACATCAT+TGG | - | tig0023574:4162-4181 | Msa1409820:intron | 30.0% | |
| !!! | AATGCTTTTTTTTAACTGGG+TGG | - | tig0023574:4364-4383 | Msa1409820:intron | 30.0% |
| ! | ATCTTTTTGTTCAACCAAGA+TGG | - | tig0023574:4557-4576 | Msa1409820:intron | 30.0% |
| CAAGAACAGCGAATAAAATA+AGG | + | tig0023574:4604-4623 | None:intergenic | 30.0% | |
| CCCTAAAATGAAAAGCTATT+AGG | - | tig0023574:4809-4828 | Msa1409820:intron | 30.0% | |
| TGACAATCACGCATAATATA+GGG | + | tig0023574:5036-5055 | None:intergenic | 30.0% | |
| ! | CTTTTATTACCAATGTTTCC+CGG | + | tig0023574:5443-5462 | None:intergenic | 30.0% |
| ! | AGTTCCATGTATTTGAAACA+GGG | + | tig0023574:5549-5568 | None:intergenic | 30.0% |
| TAAGTCAATCCATATGATTG+TGG | + | tig0023574:5829-5848 | None:intergenic | 30.0% | |
| CTATACACCTTATCATATTC+GGG | + | tig0023574:5891-5910 | None:intergenic | 30.0% | |
| GCTATACACCTTATCATATT+CGG | + | tig0023574:5892-5911 | None:intergenic | 30.0% | |
| ! | GAAGTAATTTGTACTTCAGA+GGG | - | tig0023574:6064-6083 | Msa1409820:intron | 30.0% |
| ! | AAGTAATTTGTACTTCAGAG+GGG | - | tig0023574:6065-6084 | Msa1409820:intron | 30.0% |
| CCGACAATTAAATGAATTGA+AGG | + | tig0023574:6160-6179 | None:intergenic | 30.0% | |
| CAAAATGGGTATGGTGATTT+GGG | + | tig0023574:2007-2026 | None:intergenic | 35.0% | |
| TCAAAATGGGTATGGTGATT+TGG | + | tig0023574:2008-2027 | None:intergenic | 35.0% | |
| GATGCAATTAAACTCAAGCT+AGG | - | tig0023574:2026-2045 | Msa1409820:three_prime_UTR | 35.0% | |
| ! | AACATTTGGTAATATCCAGC+CGG | + | tig0023574:2752-2771 | None:intergenic | 35.0% |
| GGATATTACCAAATGTTTCC+TGG | - | tig0023574:2755-2774 | Msa1409820:CDS | 35.0% | |
| ! | CCTTTTGATAGACATGTTAC+CGG | - | tig0023574:2869-2888 | Msa1409820:intron | 35.0% |
| AAATAGAAAGCCACTTACGT+AGG | + | tig0023574:2935-2954 | None:intergenic | 35.0% | |
| TTAGTGATAGCACGATTTAG+AGG | - | tig0023574:3031-3050 | Msa1409820:intron | 35.0% | |
| GTTTAAACTGTGCTATAACC+GGG | + | tig0023574:3142-3161 | None:intergenic | 35.0% | |
| CGTTTAAACTGTGCTATAAC+CGG | + | tig0023574:3143-3162 | None:intergenic | 35.0% | |
| CGGTTATAGCACAGTTTAAA+CGG | - | tig0023574:3141-3160 | Msa1409820:intron | 35.0% | |
| ! | GTTCCATACTATGTTTCTGT+CGG | - | tig0023574:3260-3279 | Msa1409820:intron | 35.0% |
| ! | TTCCATACTATGTTTCTGTC+GGG | - | tig0023574:3261-3280 | Msa1409820:intron | 35.0% |
| !!! | CTGAACAAACTTTTGAGATC+GGG | + | tig0023574:3390-3409 | None:intergenic | 35.0% |
| !!! | CCTGAACAAACTTTTGAGAT+CGG | + | tig0023574:3391-3410 | None:intergenic | 35.0% |
| CTAGGACTTTCAATATTGAC+TGG | - | tig0023574:3524-3543 | Msa1409820:CDS | 35.0% | |
| ! | AATATTGACTGGGTCAACAA+TGG | - | tig0023574:3535-3554 | Msa1409820:CDS | 35.0% |
| ATGTGACAAAGGAGGTTTAA+TGG | - | tig0023574:3638-3657 | Msa1409820:intron | 35.0% | |
| AAACCATTATGTCTGACAAG+TGG | + | tig0023574:3667-3686 | None:intergenic | 35.0% | |
| !!! | CAGACATAATGGTTTTATGG+TGG | - | tig0023574:3672-3691 | Msa1409820:intron | 35.0% |
| ! | GTTTTATGGTGGCATCAAAA+TGG | - | tig0023574:3683-3702 | Msa1409820:intron | 35.0% |
| AAGTTGCAAAAGCTAGACAT+AGG | - | tig0023574:3875-3894 | Msa1409820:intron | 35.0% | |
| CTCACATGATGACTTCTAAA+AGG | - | tig0023574:3903-3922 | Msa1409820:intron | 35.0% | |
| ! | CACATGATGACTTCTAAAAG+GGG | - | tig0023574:3905-3924 | Msa1409820:intron | 35.0% |
| CATAAACCTAAGGATGTGTT+AGG | - | tig0023574:3928-3947 | Msa1409820:intron | 35.0% | |
| ATTCAGCATCTAAGCATTCA+AGG | - | tig0023574:4022-4041 | Msa1409820:intron | 35.0% | |
| ! | TTTGCTACTTATGTTGAAGC+TGG | - | tig0023574:4526-4545 | Msa1409820:intron | 35.0% |
| ! | TGATTCTGCTTGCTAGTTAT+GGG | - | tig0023574:4661-4680 | Msa1409820:intron | 35.0% |
| GTGACAATCACGCATAATAT+AGG | + | tig0023574:5037-5056 | None:intergenic | 35.0% | |
| ATGTGTTACAGATACCAAAC+TGG | - | tig0023574:5228-5247 | Msa1409820:CDS | 35.0% | |
| TGTGAAAGCCATCTTACAAT+CGG | + | tig0023574:5264-5283 | None:intergenic | 35.0% | |
| GTTTCCCTGTTTCAAATACA+TGG | - | tig0023574:5542-5561 | Msa1409820:intron | 35.0% | |
| ! | CAGTTCCATGTATTTGAAAC+AGG | + | tig0023574:5550-5569 | None:intergenic | 35.0% |
| CTGTTTCAAATACATGGAAC+TGG | - | tig0023574:5548-5567 | Msa1409820:intron | 35.0% | |
| TTGTCATTAACTATTGGCAG+AGG | - | tig0023574:5631-5650 | Msa1409820:intron | 35.0% | |
| TGTCATTAACTATTGGCAGA+GGG | - | tig0023574:5632-5651 | Msa1409820:intron | 35.0% | |
| ! | GAGATCCAGATGATTGTTTT+TGG | - | tig0023574:5776-5795 | Msa1409820:intron | 35.0% |
| TCCAGCAGAAAACAAAACTA+TGG | - | tig0023574:5962-5981 | Msa1409820:intron | 35.0% | |
| !!! | ACCATAGTTTTGTTTTCTGC+TGG | + | tig0023574:5966-5985 | None:intergenic | 35.0% |
| ! | AACAGTTTTTATGGCTTCCA+GGG | - | tig0023574:6035-6054 | Msa1409820:intron | 35.0% |
| ! | GGAAGTAATTTGTACTTCAG+AGG | - | tig0023574:6063-6082 | Msa1409820:intron | 35.0% |
| TTTAATTGTCGGGAGTTTGT+CGG | - | tig0023574:6168-6187 | Msa1409820:exon | 35.0% | |
| TTTCTGCAAAACATGAGCTA+TGG | - | tig0023574:6268-6287 | Msa1409820:five_prime_UTR | 35.0% | |
| GGAAGAGGTTGTGAAGTAAA+CGG | + | tig0023574:1863-1882 | None:intergenic | 40.0% | |
| ATTGCAAAACCTACCTGAGA+TGG | + | tig0023574:1920-1939 | None:intergenic | 40.0% | |
| TAGGCATGAAACTTGCGTAA+CGG | + | tig0023574:1960-1979 | None:intergenic | 40.0% | |
| AATGTAATCACGTGTCATGG+TGG | + | tig0023574:2402-2421 | None:intergenic | 40.0% | |
| TGTCAATGCTTCACAATACG+TGG | - | tig0023574:2483-2502 | Msa1409820:intron | 40.0% | |
| GGGTATAAAATAAAGGTCCG+TGG | + | tig0023574:2572-2591 | None:intergenic | 40.0% | |
| CTTCTGTGTATTGTAGTCTC+AGG | - | tig0023574:2697-2716 | Msa1409820:CDS | 40.0% | |
| CCGGTAACATGTCTATCAAA+AGG | + | tig0023574:2872-2891 | None:intergenic | 40.0% | |
| !! | AATGGAATCAGGGTGTTGTA+TGG | + | tig0023574:2899-2918 | None:intergenic | 40.0% |
| CTATAACCGGGCCTATATAA+AGG | + | tig0023574:3130-3149 | None:intergenic | 40.0% | |
| ! | TCCATACTATGTTTCTGTCG+GGG | - | tig0023574:3262-3281 | Msa1409820:intron | 40.0% |
| TTCTCAAACCAAACAGACTC+TGG | + | tig0023574:3296-3315 | None:intergenic | 40.0% | |
| ! | CCGATCTCAAAAGTTTGTTC+AGG | - | tig0023574:3388-3407 | Msa1409820:CDS | 40.0% |
| CAACTGCTAGAATGTGACAA+AGG | - | tig0023574:3627-3646 | Msa1409820:intron | 40.0% | |
| ! | CTAAAAGGGGCATAAACCTA+AGG | - | tig0023574:3918-3937 | Msa1409820:intron | 40.0% |
| ACCTAAGGATGTGTTAGGTA+CGG | - | tig0023574:3933-3952 | Msa1409820:intron | 40.0% | |
| !!! | GGGACTGTTTTAAGTTTTCC+TGG | - | tig0023574:3954-3973 | Msa1409820:intron | 40.0% |
| ! | GTGCATATGAGTTGAACACA+CGG | + | tig0023574:4229-4248 | None:intergenic | 40.0% |
| GGGTGGTCATATTTATCAGT+AGG | - | tig0023574:4381-4400 | Msa1409820:intron | 40.0% | |
| CTTACAACAACTTGTCTCTG+AGG | + | tig0023574:4479-4498 | None:intergenic | 40.0% | |
| CTCAGAGACAAGTTGTTGTA+AGG | - | tig0023574:4477-4496 | Msa1409820:intron | 40.0% | |
| TGTTCAACCAAGATGGATCA+AGG | - | tig0023574:4564-4583 | Msa1409820:intron | 40.0% | |
| ! | GTGATTCTGCTTGCTAGTTA+TGG | - | tig0023574:4660-4679 | Msa1409820:intron | 40.0% |
| ATGCGTGATTGTCACATATC+AGG | - | tig0023574:5042-5061 | Msa1409820:intron | 40.0% | |
| CACATATCAGGTCTCAAACT+CGG | - | tig0023574:5054-5073 | Msa1409820:intron | 40.0% | |
| ACATATCAGGTCTCAAACTC+GGG | - | tig0023574:5055-5074 | Msa1409820:intron | 40.0% | |
| AGTAAGCAAATCATACCTGC+TGG | + | tig0023574:5384-5403 | None:intergenic | 40.0% | |
| !! | GAGTTTGCAGTTGTTTCTGT+TGG | - | tig0023574:5417-5436 | Msa1409820:intron | 40.0% |
| ! | ACATGGAACTGGTTTCTCTA+TGG | - | tig0023574:5559-5578 | Msa1409820:intron | 40.0% |
| CATTCTCATTCTCGATTGCA+CGG | + | tig0023574:5703-5722 | None:intergenic | 40.0% | |
| GTGACAGCATACCAGAAAAT+AGG | - | tig0023574:5855-5874 | Msa1409820:intron | 40.0% | |
| AGCATACCAGAAAATAGGAG+AGG | - | tig0023574:5860-5879 | Msa1409820:intron | 40.0% | |
| GCATACCAGAAAATAGGAGA+GGG | - | tig0023574:5861-5880 | Msa1409820:intron | 40.0% | |
| ! | GAAAACCCTCTCCTATTTTC+TGG | + | tig0023574:5869-5888 | None:intergenic | 40.0% |
| ! | GGGTTTTCCCGAATATGATA+AGG | - | tig0023574:5881-5900 | Msa1409820:intron | 40.0% |
| ! | GAACAGTTTTTATGGCTTCC+AGG | - | tig0023574:6034-6053 | Msa1409820:intron | 40.0% |
| CAATCATAAACAGACACCAG+GGG | + | tig0023574:6105-6124 | None:intergenic | 40.0% | |
| CCAATCATAAACAGACACCA+GGG | + | tig0023574:6106-6125 | None:intergenic | 40.0% | |
| ACCAATCATAAACAGACACC+AGG | + | tig0023574:6107-6126 | None:intergenic | 40.0% | |
| TGAAGTAAACGGCACCGTTT+CGG | + | tig0023574:1852-1871 | None:intergenic | 45.0% | |
| GATTTCTGCGAAGAGGAAGA+AGG | + | tig0023574:1887-1906 | None:intergenic | 45.0% | |
| ! | TGAAACTTGCGTAACGGAAG+TGG | + | tig0023574:1954-1973 | None:intergenic | 45.0% |
| !!! | AGGGTTTTAAATAGAGGGCG+CGG | - | tig0023574:2271-2290 | Msa1409820:CDS | 45.0% |
| CCGGCAAATTGGAAAATGTC+GGG | + | tig0023574:2724-2743 | None:intergenic | 45.0% | |
| ! | CCCGACATTTTCCAATTTGC+CGG | - | tig0023574:2721-2740 | Msa1409820:CDS | 45.0% |
| GCCGGCAAATTGGAAAATGT+CGG | + | tig0023574:2725-2744 | None:intergenic | 45.0% | |
| ! | TTGGTAATATCCAGCCGGAT+AGG | + | tig0023574:2747-2766 | None:intergenic | 45.0% |
| GGTGCATACCAGGAAACATT+TGG | + | tig0023574:2766-2785 | None:intergenic | 45.0% | |
| TCAACCCTGGAATCAATGCA+GGG | + | tig0023574:2787-2806 | None:intergenic | 45.0% | |
| ! | GTTGACTCCACCACAAATTG+AGG | - | tig0023574:2802-2821 | Msa1409820:intron | 45.0% |
| TTCGCAGGTTCCTCAATTTG+TGG | + | tig0023574:2815-2834 | None:intergenic | 45.0% | |
| GCGGTAAGTCAATGGAATCA+GGG | + | tig0023574:2909-2928 | None:intergenic | 45.0% | |
| TGCGGTAAGTCAATGGAATC+AGG | + | tig0023574:2910-2929 | None:intergenic | 45.0% | |
| ACCCCGACAGAAACATAGTA+TGG | + | tig0023574:3266-3285 | None:intergenic | 45.0% | |
| TGAACTGTCCAGAGTCTGTT+TGG | - | tig0023574:3285-3304 | Msa1409820:intron | 45.0% | |
| CTGCTAGAATGTGACAAAGG+AGG | - | tig0023574:3630-3649 | Msa1409820:intron | 45.0% | |
| ! | CTGCCACTTGTCAGACATAA+TGG | - | tig0023574:3661-3680 | Msa1409820:intron | 45.0% |
| GGATAACATGCTGCTAATGC+AGG | + | tig0023574:3749-3768 | None:intergenic | 45.0% | |
| CCTAAGGATGTGTTAGGTAC+GGG | - | tig0023574:3934-3953 | Msa1409820:intron | 45.0% | |
| TGGACCTGATTCTGATTTCC+TGG | - | tig0023574:4050-4069 | Msa1409820:intron | 45.0% | |
| GCTACCAGGAAATCAGAATC+AGG | + | tig0023574:4057-4076 | None:intergenic | 45.0% | |
| ! | CTCTGACACCGATTGTAAGA+TGG | - | tig0023574:5253-5272 | Msa1409820:CDS | 45.0% |
| CTGAAAATGTACCTCCTGCA+GGG | - | tig0023574:5337-5356 | Msa1409820:intron | 45.0% | |
| AAGCAAATCATACCTGCTGG+AGG | + | tig0023574:5381-5400 | None:intergenic | 45.0% | |
| !! | TTGCAGTTGTTTCTGTTGGC+CGG | - | tig0023574:5421-5440 | Msa1409820:intron | 45.0% |
| ! | GGAACTGGTTTCTCTATGGA+AGG | - | tig0023574:5563-5582 | Msa1409820:intron | 45.0% |
| ! | ATTACCAGGCTGGTTCTCAA+TGG | + | tig0023574:5672-5691 | None:intergenic | 45.0% |
| ATTGAGAACCAGCCTGGTAA+TGG | - | tig0023574:5671-5690 | Msa1409820:intron | 45.0% | |
| AATGAGAATGTCCCAGAAGC+TGG | - | tig0023574:5713-5732 | Msa1409820:intron | 45.0% | |
| TCCTGGGTTCCACAATCATA+TGG | - | tig0023574:5817-5836 | Msa1409820:intron | 45.0% | |
| TCCATATGATTGTGGAACCC+AGG | + | tig0023574:5821-5840 | None:intergenic | 45.0% | |
| CCCTGGTGTCTGTTTATGAT+TGG | - | tig0023574:6103-6122 | Msa1409820:CDS | 45.0% | |
| TTCACTTACCCCACTCTAGA+AGG | + | tig0023574:6296-6315 | None:intergenic | 45.0% | |
| TGGGGTAAGTGAACTGATAG+TGG | - | tig0023574:6303-6322 | Msa1409820:five_prime_UTR | 45.0% | |
| !! | TTTGTAATAAATTAATTAAT+AGG | - | tig0023574:3983-4002 | Msa1409820:intron | 5.0% |
| GAAGTAAACGGCACCGTTTC+GGG | + | tig0023574:1851-1870 | None:intergenic | 50.0% | |
| GAAGAGGAAGAAGGTGGAAG+AGG | + | tig0023574:1878-1897 | None:intergenic | 50.0% | |
| TTCTGCGAAGAGGAAGAAGG+TGG | + | tig0023574:1884-1903 | None:intergenic | 50.0% | |
| TTGTGGCGATTTCTGCGAAG+AGG | + | tig0023574:1894-1913 | None:intergenic | 50.0% | |
| ATCGCCACAAGATCCATCTC+AGG | - | tig0023574:1904-1923 | Msa1409820:three_prime_UTR | 50.0% | |
| CCTACCTGAGATGGATCTTG+TGG | + | tig0023574:1911-1930 | None:intergenic | 50.0% | |
| CCACAAGATCCATCTCAGGT+AGG | - | tig0023574:1908-1927 | Msa1409820:three_prime_UTR | 50.0% | |
| TTCCAATTTGCCGGCCTATC+CGG | - | tig0023574:2730-2749 | Msa1409820:CDS | 50.0% | |
| TAATATCCAGCCGGATAGGC+CGG | + | tig0023574:2743-2762 | None:intergenic | 50.0% | |
| ATCAATGCAGGGTGCATACC+AGG | + | tig0023574:2776-2795 | None:intergenic | 50.0% | |
| !! | ATGCACCCTGCATTGATTCC+AGG | - | tig0023574:2779-2798 | Msa1409820:intron | 50.0% |
| !! | TGCACCCTGCATTGATTCCA+GGG | - | tig0023574:2780-2799 | Msa1409820:intron | 50.0% |
| GTCAACCCTGGAATCAATGC+AGG | + | tig0023574:2788-2807 | None:intergenic | 50.0% | |
| ! | ATTTGTGGTGGAGTCAACCC+TGG | + | tig0023574:2800-2819 | None:intergenic | 50.0% |
| GCAGGTTCCTCAATTTGTGG+TGG | + | tig0023574:2812-2831 | None:intergenic | 50.0% | |
| CAGCATATAAGCCAGCTCCA+CGG | + | tig0023574:2838-2857 | None:intergenic | 50.0% | |
| !! | CAGGGTGTTGTATGGAAGTC+CGG | + | tig0023574:2891-2910 | None:intergenic | 50.0% |
| GTAGGTGTGCGGTAAGTCAA+TGG | + | tig0023574:2917-2936 | None:intergenic | 50.0% | |
| TTACCGCACACCTACGTAAG+TGG | - | tig0023574:2922-2941 | Msa1409820:intron | 50.0% | |
| AAGCCACTTACGTAGGTGTG+CGG | + | tig0023574:2928-2947 | None:intergenic | 50.0% | |
| CCCGTACCTAACACATCCTT+AGG | + | tig0023574:3937-3956 | None:intergenic | 50.0% | |
| ! | TGGTCTTGGGGGTAAACCTT+AGG | - | tig0023574:4092-4111 | Msa1409820:intron | 50.0% |
| ! | CATGCTCTGAATGGCACTAG+TGG | + | tig0023574:4205-4224 | None:intergenic | 50.0% |
| ! | ACACACGGTCATGCTCTGAA+TGG | + | tig0023574:4214-4233 | None:intergenic | 50.0% |
| ! | TGCTTGCCCCTGATTTTCAC+CGG | + | tig0023574:4429-4448 | None:intergenic | 50.0% |
| !! | ACAACTTGTCTCTGAGGTGC+AGG | + | tig0023574:4473-4492 | None:intergenic | 50.0% |
| ACCAAGATGGATCAAGGCAG+AGG | - | tig0023574:4570-4589 | Msa1409820:intron | 50.0% | |
| !! | AGGAGGTACATTTTCAGCCC+TGG | + | tig0023574:5334-5353 | None:intergenic | 50.0% |
| GCTGAAAATGTACCTCCTGC+AGG | - | tig0023574:5336-5355 | Msa1409820:intron | 50.0% | |
| !! | TGCAGTTGTTTCTGTTGGCC+GGG | - | tig0023574:5422-5441 | Msa1409820:intron | 50.0% |
| TTCTGTTGGCCGGGAAACAT+TGG | - | tig0023574:5431-5450 | Msa1409820:intron | 50.0% | |
| ACAGGGAAACCCATCCCAAA+AGG | + | tig0023574:5532-5551 | None:intergenic | 50.0% | |
| TGGTTCTCAATGGCAGCATC+AGG | + | tig0023574:5662-5681 | None:intergenic | 50.0% | |
| TTTATCGCTTCCCTGCTTCC+TGG | - | tig0023574:5800-5819 | Msa1409820:intron | 50.0% | |
| TTATCGCTTCCCTGCTTCCT+GGG | - | tig0023574:5801-5820 | Msa1409820:intron | 50.0% | |
| ATTGTGGAACCCAGGAAGCA+GGG | + | tig0023574:5813-5832 | None:intergenic | 50.0% | |
| ! | TTTTATGGCTTCCAGGGCAC+AGG | - | tig0023574:6041-6060 | Msa1409820:intron | 50.0% |
| TTTATGGCTTCCAGGGCACA+GGG | - | tig0023574:6042-6061 | Msa1409820:intron | 50.0% | |
| CAAATTACTTCCCTGTGCCC+TGG | + | tig0023574:6055-6074 | None:intergenic | 50.0% | |
| TCATAAACAGACACCAGGGG+TGG | + | tig0023574:6102-6121 | None:intergenic | 50.0% | |
| AATTGTCGGGAGTTTGTCGG+CGG | - | tig0023574:6171-6190 | Msa1409820:exon | 50.0% | |
| ! | AGCTATGGTGCCTTCTAGAG+TGG | - | tig0023574:6283-6302 | Msa1409820:five_prime_UTR | 50.0% |
| !! | GCTATGGTGCCTTCTAGAGT+GGG | - | tig0023574:6284-6303 | Msa1409820:five_prime_UTR | 50.0% |
| !! | CTATGGTGCCTTCTAGAGTG+GGG | - | tig0023574:6285-6304 | Msa1409820:five_prime_UTR | 50.0% |
| GGCAGAAAACGCTCCCGAAA+CGG | - | tig0023574:1835-1854 | Msa1409820:three_prime_UTR | 55.0% | |
| GATGCAGCCTCATTCCTCGT+GGG | - | tig0023574:2352-2371 | Msa1409820:intron | 55.0% | |
| ! | TGGTGTCAGTGTCAGACACG+TGG | + | tig0023574:2382-2401 | None:intergenic | 55.0% |
| TGTGGCGCAAATCGCATCCA+CGG | - | tig0023574:2552-2571 | Msa1409820:intron | 55.0% | |
| ATTGAGGAACCTGCGAACCG+TGG | - | tig0023574:2818-2837 | Msa1409820:intron | 55.0% | |
| !! | GCACAGCTCGTGTTGGTCTT+GGG | - | tig0023574:4079-4098 | Msa1409820:intron | 55.0% |
| !! | CACAGCTCGTGTTGGTCTTG+GGG | - | tig0023574:4080-4099 | Msa1409820:intron | 55.0% |
| !! | ACAGCTCGTGTTGGTCTTGG+GGG | - | tig0023574:4081-4100 | Msa1409820:intron | 55.0% |
| GCAGCAGCAGCTTCAGAAGT+TGG | + | tig0023574:4407-4426 | None:intergenic | 55.0% | |
| !! | ACTTCTGAAGCTGCTGCTGC+CGG | - | tig0023574:4407-4426 | Msa1409820:intron | 55.0% |
| TGCTGCTGCCGGTGAAAATC+AGG | - | tig0023574:4418-4437 | Msa1409820:intron | 55.0% | |
| GCTGCTGCCGGTGAAAATCA+GGG | - | tig0023574:4419-4438 | Msa1409820:intron | 55.0% | |
| CTGCTGCCGGTGAAAATCAG+GGG | - | tig0023574:4420-4439 | Msa1409820:intron | 55.0% | |
| GCCTCTGCCTTGATCCATCT+TGG | + | tig0023574:4574-4593 | None:intergenic | 55.0% | |
| !! | TCGGTGTCAGAGCTCCAGTT+TGG | + | tig0023574:5245-5264 | None:intergenic | 55.0% |
| ! | ACATTTTCAGCCCTGGCTGC+AGG | + | tig0023574:5327-5346 | None:intergenic | 55.0% |
| AAATGTACCTCCTGCAGGGC+AGG | - | tig0023574:5341-5360 | Msa1409820:intron | 55.0% | |
| ! | CATACCTGCTGGAGGAGCAT+TGG | + | tig0023574:5373-5392 | None:intergenic | 55.0% |
| AATGTCCCAGAAGCTGGCAG+AGG | - | tig0023574:5719-5738 | Msa1409820:intron | 55.0% | |
| CATTGCCTCTGCCAGCTTCT+GGG | + | tig0023574:5727-5746 | None:intergenic | 55.0% | |
| CAATGGTGGCAACCAGTGGT+GGG | - | tig0023574:5742-5761 | Msa1409820:intron | 55.0% | |
| AATGGTGGCAACCAGTGGTG+GGG | - | tig0023574:5743-5762 | Msa1409820:intron | 55.0% | |
| CCTTTACAATGCCCCACCAC+TGG | + | tig0023574:5757-5776 | None:intergenic | 55.0% | |
| !! | CCAGTGGTGGGGCATTGTAA+AGG | - | tig0023574:5754-5773 | Msa1409820:intron | 55.0% |
| GATTGTGGAACCCAGGAAGC+AGG | + | tig0023574:5814-5833 | None:intergenic | 55.0% | |
| GGCAGTTGTTAATCCACCCC+TGG | - | tig0023574:6086-6105 | Msa1409820:intron | 55.0% | |
| CGATGCAGCCTCATTCCTCG+TGG | - | tig0023574:2351-2370 | Msa1409820:intron | 60.0% | |
| AGCCGGATAGGCCGGCAAAT+TGG | + | tig0023574:2735-2754 | None:intergenic | 60.0% | |
| AATTTGCCGGCCTATCCGGC+TGG | - | tig0023574:2734-2753 | Msa1409820:CDS | 60.0% | |
| GTAGCACGCACAGCTCGTGT+TGG | - | tig0023574:4072-4091 | Msa1409820:intron | 60.0% | |
| ! | CGCACAGCTCGTGTTGGTCT+TGG | - | tig0023574:4078-4097 | Msa1409820:intron | 60.0% |
| TCCACCAAGACCTGCAGCCA+GGG | - | tig0023574:5314-5333 | Msa1409820:intron | 60.0% | |
| GTTGCCAATGCTCCTCCAGC+AGG | - | tig0023574:5366-5385 | Msa1409820:intron | 60.0% | |
| GCTGCCATTGAGAACCAGCC+TGG | - | tig0023574:5665-5684 | Msa1409820:intron | 60.0% | |
| GGTCTGCACCATTACCAGGC+TGG | + | tig0023574:5682-5701 | None:intergenic | 60.0% | |
| GCACGGTCTGCACCATTACC+AGG | + | tig0023574:5686-5705 | None:intergenic | 60.0% | |
| CCATTGCCTCTGCCAGCTTC+TGG | + | tig0023574:5728-5747 | None:intergenic | 60.0% | |
| CCAGAAGCTGGCAGAGGCAA+TGG | - | tig0023574:5725-5744 | Msa1409820:intron | 60.0% | |
| GAAGCTGGCAGAGGCAATGG+TGG | - | tig0023574:5728-5747 | Msa1409820:intron | 60.0% | |
| GAGGCAATGGTGGCAACCAG+TGG | - | tig0023574:5738-5757 | Msa1409820:intron | 60.0% | |
| GCAATGGTGGCAACCAGTGG+TGG | - | tig0023574:5741-5760 | Msa1409820:intron | 60.0% | |
| GGGCGCGGTAACGATTGCAG+TGG | - | tig0023574:2286-2305 | Msa1409820:CDS | 65.0% | |
| TGGCACGCCCACGAGGAATG+AGG | + | tig0023574:2362-2381 | None:intergenic | 65.0% | |
| GAACCTGCGAACCGTGGAGC+TGG | - | tig0023574:2824-2843 | Msa1409820:intron | 65.0% | |
| AAGCCAGCTCCACGGTTCGC+AGG | + | tig0023574:2830-2849 | None:intergenic | 65.0% | |
| CACGAGCTGTGCGTGCTACC+AGG | + | tig0023574:4071-4090 | None:intergenic | 65.0% | |
| !! | CTCTGAGGTGCAGGCTGCTG+AGG | + | tig0023574:4464-4483 | None:intergenic | 65.0% |
| ! | GCAGGTCTTGGTGGACGAGG+AGG | + | tig0023574:5309-5328 | None:intergenic | 65.0% |
| ! | GCTGCAGGTCTTGGTGGACG+AGG | + | tig0023574:5312-5331 | None:intergenic | 65.0% |
| GTCCACCAAGACCTGCAGCC+AGG | - | tig0023574:5313-5332 | Msa1409820:intron | 65.0% | |
| TCAGCCCTGGCTGCAGGTCT+TGG | + | tig0023574:5321-5340 | None:intergenic | 65.0% | |
| TGTACCTCCTGCAGGGCAGG+TGG | - | tig0023574:5344-5363 | Msa1409820:intron | 65.0% | |
| TTGGCAACCACCTGCCCTGC+AGG | + | tig0023574:5354-5373 | None:intergenic | 65.0% | |
| AGACACGTGGCACGCCCACG+AGG | + | tig0023574:2369-2388 | None:intergenic | 70.0% | |
| GCCCTGGCTGCAGGTCTTGG+TGG | + | tig0023574:5318-5337 | None:intergenic | 70.0% | |
| GCAACCACCTGCCCTGCAGG+AGG | + | tig0023574:5351-5370 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023574 | gene | 1687 | 6326 | 1687 | ID=Msa1409820;Name=Msa1409820 |
| tig0023574 | mRNA | 1687 | 6326 | 1687 | ID=Msa1409820-mRNA-1;Parent=Msa1409820;Name=Msa1409820-mRNA-1;_AED=0.06;_eAED=0.06;_QI=146|1|1|1|1|1|5|482|296 |
| tig0023574 | exon | 1687 | 2362 | 1687 | ID=Msa1409820-mRNA-1:exon:26277;Parent=Msa1409820-mRNA-1 |
| tig0023574 | exon | 2626 | 2774 | 2626 | ID=Msa1409820-mRNA-1:exon:26276;Parent=Msa1409820-mRNA-1 |
| tig0023574 | exon | 3383 | 3613 | 3383 | ID=Msa1409820-mRNA-1:exon:26275;Parent=Msa1409820-mRNA-1 |
| tig0023574 | exon | 5077 | 5300 | 5077 | ID=Msa1409820-mRNA-1:exon:26274;Parent=Msa1409820-mRNA-1 |
| tig0023574 | exon | 6088 | 6326 | 6088 | ID=Msa1409820-mRNA-1:exon:26273;Parent=Msa1409820-mRNA-1 |
| tig0023574 | five_prime_UTR | 6181 | 6326 | 6181 | ID=Msa1409820-mRNA-1:five_prime_utr;Parent=Msa1409820-mRNA-1 |
| tig0023574 | CDS | 6088 | 6180 | 6088 | ID=Msa1409820-mRNA-1:cds;Parent=Msa1409820-mRNA-1 |
| tig0023574 | CDS | 5077 | 5300 | 5077 | ID=Msa1409820-mRNA-1:cds;Parent=Msa1409820-mRNA-1 |
| tig0023574 | CDS | 3383 | 3613 | 3383 | ID=Msa1409820-mRNA-1:cds;Parent=Msa1409820-mRNA-1 |
| tig0023574 | CDS | 2626 | 2774 | 2626 | ID=Msa1409820-mRNA-1:cds;Parent=Msa1409820-mRNA-1 |
| tig0023574 | CDS | 2169 | 2362 | 2169 | ID=Msa1409820-mRNA-1:cds;Parent=Msa1409820-mRNA-1 |
| tig0023574 | three_prime_UTR | 1687 | 2168 | 1687 | ID=Msa1409820-mRNA-1:three_prime_utr;Parent=Msa1409820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
