AlfalfaGEDB | Msa1444430

M. sativa cultivar zhongmu-4 / Msa1444430

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1444430	G7IG80	97.643	297	5	2	1	296	1	296	0.0	570

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0140530	Msa1444430	0.801673	8.057314e-49	-8.615850e-47
Msa0283270	Msa1444430	0.995713	4.271776e-219	-8.615850e-47
Msa0283570	Msa1444430	0.973666	8.123957e-137	-8.615850e-47
Msa0381580	Msa1444430	0.803083	4.129457e-49	-8.615850e-47
Msa1409820	Msa1444430	0.846953	1.570490e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1444430	MtrunA17_Chr2g0298661	97.315	298	5	3	1	296	1	297	0.0	566

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1444430	AT4G29960.1	62.182	275	85	7	25	293	28	289	1.26e-97	289

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Find 136 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTACCTCCTGCAGGGC+AGG	0.497728	tig0030728:-36344	Msa1444430:CDS
AACATTTGGTAATATCCAGC+CGG	0.568144	tig0030728:+38578	None:intergenic
AACTATGGTGATAATTTATA+AGG	0.311191	tig0030728:-35708	Msa1444430:three_prime_UTR
AAGCAAATCATACCTGCTGG+AGG	0.681082	tig0030728:+36307	None:intergenic
AAGCCACTTACGTAGGTGTG+CGG	0.702356	tig0030728:+38402	None:intergenic
AAGCCAGCTCCACGGTTCGC+AGG	0.514593	tig0030728:+38500	None:intergenic
AAGTAAACGGCACCGTTTCG+GGG	0.585571	tig0030728:+39457	None:intergenic
AAGTAATTTGTACTTCAGAG+GGG	0.729284	tig0030728:-35620	Msa1444430:three_prime_UTR
AATGAGAATGTCCCAGAAGC+TGG	0.502270	tig0030728:-35972	Msa1444430:CDS
AATGGAATCAGGGTGTTGTA+TGG	0.461274	tig0030728:+38431	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGTTCAATTGCATCAAAAT+GGG	+	tig0030728:35716-35735	None:intergenic	30.0%
TGAGTTCAATTGCATCAAAA+TGG	+	tig0030728:35717-35736	None:intergenic	30.0%
TAGGTTGTTAGCACATAAAA+TGG	+	tig0030728:35849-35868	None:intergenic	30.0%
TTTAATGTAATCACGTGTCA+TGG	+	tig0030728:36073-36092	None:intergenic	30.0%
CAAGCACAAAATGTGTAAAA+AGG	+	tig0030728:36265-36284	None:intergenic	30.0%
TGAATTCATGTGTTAAATGG+TGG	-	tig0030728:36337-36356	Msa1444430:CDS	30.0%
TGTCTATCAAAAGGATTAAC+AGG	+	tig0030728:36535-36554	None:intergenic	30.0%
ATCACTAAGTTTCACATACA+AGG	+	tig0030728:36691-36710	None:intergenic	30.0%
TTTATACCTTTATATAGGCC+CGG	-	tig0030728:36793-36812	Msa1444430:CDS	30.0%
GAAATAAAGTGAAAACAACG+TGG	+	tig0030728:37040-37059	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0030728	gene	35382	39639	35382	ID=Msa1444430;Name=Msa1444430
tig0030728	mRNA	35382	39639	35382	ID=Msa1444430-mRNA-1;Parent=Msa1444430;Name=Msa1444430-mRNA-1;_AED=0.06;_eAED=0.06;_QI=146\|1\|1\|1\|1\|1\|5\|481\|296
tig0030728	exon	35382	36056	35382	ID=Msa1444430-mRNA-1:exon:14474;Parent=Msa1444430-mRNA-1
tig0030728	exon	36320	36468	36320	ID=Msa1444430-mRNA-1:exon:14473;Parent=Msa1444430-mRNA-1
tig0030728	exon	36719	36949	36719	ID=Msa1444430-mRNA-1:exon:14472;Parent=Msa1444430-mRNA-1
tig0030728	exon	38413	38636	38413	ID=Msa1444430-mRNA-1:exon:14471;Parent=Msa1444430-mRNA-1
tig0030728	exon	39401	39639	39401	ID=Msa1444430-mRNA-1:exon:14470;Parent=Msa1444430-mRNA-1
tig0030728	five_prime_UTR	39494	39639	39494	ID=Msa1444430-mRNA-1:five_prime_utr;Parent=Msa1444430-mRNA-1
tig0030728	CDS	39401	39493	39401	ID=Msa1444430-mRNA-1:cds;Parent=Msa1444430-mRNA-1
tig0030728	CDS	38413	38636	38413	ID=Msa1444430-mRNA-1:cds;Parent=Msa1444430-mRNA-1
tig0030728	CDS	36719	36949	36719	ID=Msa1444430-mRNA-1:cds;Parent=Msa1444430-mRNA-1
tig0030728	CDS	36320	36468	36320	ID=Msa1444430-mRNA-1:cds;Parent=Msa1444430-mRNA-1
tig0030728	CDS	35863	36056	35863	ID=Msa1444430-mRNA-1:cds;Parent=Msa1444430-mRNA-1
tig0030728	three_prime_UTR	35382	35862	35382	ID=Msa1444430-mRNA-1:three_prime_utr;Parent=Msa1444430-mRNA-1

Gene Sequence

>Msa1444430

ATGGCAGAAAACGCCCCCGAAACGGTGCCGTTTACTTCACAACCTCTCCCACCTTCTTCCTCTTCGCAGAAATCGCCACAAGATCCATCTCAGTCTCAGGTCCCGACATTTTCCAATTTGCCGGCCTATCCGGCTGGATATTACCAAATGTTTCCTGGTATGCACCCTGCATTGATTCCAGGGTTGACTCCACCACAAATTGAGGAACCTGCGAACCGTGGAGCTGGCTTATATGCTGTTCCTGTTAATCCTTTTGATAGACATGTTACCGGACTTCCATACAACACCCTGATTCCATTGACTTACCGCACACCTACTAGGCCAACTTCTGAAGCTGCTGCTGCCGGTGAAAATCAGGGGCAAGCAGCGCAGCAACATCCTCAGCAGCCTGCACCTCAGAGACAAGTTGTTGTAAGGAGATTTCAAATTGCATTTCAAATCGATTTGCTACTTATGTTGAAGCTGGCAGCTGTTATCTTTTTGTTCAACCAAGATGGATCAAGGCAGAGGCTTGTTGTCCTTATTTTATTCGCTGTTCTTGTATATTTATACCAAACTGGAGCTCTGACACCGATTGTAAGATGGCTTTCACAAAATATGCAAAGAGCTGCAGCACCTCCTCGTCCACCAAGACCTGCAGCCAGGGCTGAAAATGTACCTCCTGCAGGGCAGGTGGTTGCCAATGCTCCTCCAGCAGAGGGTCAACCTGATGCTGCCATTGAGAACCAGCCTGGTAATGGTGCAGACCGTGCAATCGAGAATGAGAATGTCCCAGAAGCTGGCAGAGGCAATGGTGGCAACCAGTGGTGGGGCATTGTAAAGGAGATCCAGATGATTGTTTTTGGATTTATCACTTCCCTGCTTCCTGGGTTCCACAATCATATGGATTGA

Protein sequence

>Msa1444430

MAENAPETVPFTSQPLPPSSSSQKSPQDPSQSQVPTFSNLPAYPAGYYQMFPGMHPALIPGLTPPQIEEPANRGAGLYAVPVNPFDRHVTGLPYNTLIPLTYRTPTRPTSEAAAAGENQGQAAQQHPQQPAPQRQVVVRRFQIAFQIDLLLMLKLAAVIFLFNQDGSRQRLVVLILFAVLVYLYQTGALTPIVRWLSQNMQRAAAPPRPPRPAARAENVPPAGQVVANAPPAEGQPDAAIENQPGNGADRAIENENVPEAGRGNGGNQWWGIVKEIQMIVFGFITSLLPGFHNHMD*