Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444430 | G7IG80 | 97.643 | 297 | 5 | 2 | 1 | 296 | 1 | 296 | 0.0 | 570 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1409820 | Msa1444430 | 0.846953 | 1.570490e-59 | -8.615850e-47 |
| Msa0140530 | Msa1444430 | 0.801673 | 8.057314e-49 | -8.615850e-47 |
| Msa0381580 | Msa1444430 | 0.803083 | 4.129457e-49 | -8.615850e-47 |
| Msa0283270 | Msa1444430 | 0.995713 | 4.271776e-219 | -8.615850e-47 |
| Msa0283570 | Msa1444430 | 0.973666 | 8.123957e-137 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444430 | MtrunA17_Chr2g0298661 | 97.315 | 298 | 5 | 3 | 1 | 296 | 1 | 297 | 0.0 | 566 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444430 | AT4G29960.1 | 62.182 | 275 | 85 | 7 | 25 | 293 | 28 | 289 | 1.26e-97 | 289 |
Find 136 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTGCCTCTGCCAGCTTC+TGG | 0.083546 | tig0030728:+35960 | None:intergenic |
| GAAGTAAACGGCACCGTTTC+GGG | 0.177318 | tig0030728:+39456 | None:intergenic |
| TTTATCACTTCCCTGCTTCC+TGG | 0.205047 | tig0030728:-35885 | Msa1444430:CDS |
| GTAGTTTGATTGATAAATTT+AGG | 0.230333 | tig0030728:+39495 | None:intergenic |
| TGCTGCTGCCGGTGAAAATC+AGG | 0.245689 | tig0030728:-36909 | Msa1444430:CDS |
| GCTATACACCTTATCATATT+CGG | 0.263262 | tig0030728:+35796 | None:intergenic |
| TCAGCCCTGGCTGCAGGTCT+TGG | 0.293292 | tig0030728:+36367 | None:intergenic |
| TAGTTTGATTGATAAATTTA+GGG | 0.301230 | tig0030728:+39496 | None:intergenic |
| CATTGCCTCTGCCAGCTTCT+GGG | 0.309185 | tig0030728:+35961 | None:intergenic |
| AACTATGGTGATAATTTATA+AGG | 0.311191 | tig0030728:-35708 | Msa1444430:three_prime_UTR |
| GTCATAACTAATACATATTT+AGG | 0.314953 | tig0030728:-35757 | Msa1444430:three_prime_UTR |
| ATGCACCCTGCATTGATTCC+AGG | 0.344373 | tig0030728:-38548 | Msa1444430:CDS |
| CTATACACCTTATCATATTC+GGG | 0.352459 | tig0030728:+35797 | None:intergenic |
| TTCCAATTTGCCGGCCTATC+CGG | 0.357512 | tig0030728:-38597 | Msa1444430:CDS |
| TGCGGTAAGTCAATGGAATC+AGG | 0.360834 | tig0030728:+38420 | None:intergenic |
| CAAGAACAGCGAATAAAATA+AGG | 0.361508 | tig0030728:+36726 | None:intergenic |
| GAAATGAAAATTTAACTCAT+TGG | 0.365391 | tig0030728:+39586 | None:intergenic |
| TGTCTATCAAAAGGATTAAC+AGG | 0.366467 | tig0030728:+38467 | None:intergenic |
| TGAAGTAAACGGCACCGTTT+CGG | 0.367186 | tig0030728:+39455 | None:intergenic |
| AGCCGGATAGGCCGGCAAAT+TGG | 0.371911 | tig0030728:+38595 | None:intergenic |
| CTTCAATTCATTTAATTGTC+GGG | 0.378946 | tig0030728:-35527 | Msa1444430:three_prime_UTR |
| GTGACAGCATACCAGAAAAT+AGG | 0.391212 | tig0030728:-35830 | Msa1444430:three_prime_UTR |
| GGATATTACCAAATGTTTCC+TGG | 0.393625 | tig0030728:-38572 | Msa1444430:CDS |
| GCCTCTGCCTTGATCCATCT+TGG | 0.399332 | tig0030728:+36756 | None:intergenic |
| CCCTGGTGTCTGTTTATGAT+TGG | 0.401189 | tig0030728:-35582 | Msa1444430:three_prime_UTR |
| TCCTGGGTTCCACAATCATA+TGG | 0.403844 | tig0030728:-35868 | Msa1444430:CDS |
| AATTTAACTCATTGGATTTG+AGG | 0.421789 | tig0030728:+39594 | None:intergenic |
| TTGGCAACCACCTGCCCTGC+AGG | 0.422864 | tig0030728:+36334 | None:intergenic |
| GTCCACCAAGACCTGCAGCC+AGG | 0.426345 | tig0030728:-36372 | Msa1444430:CDS |
| TCCAGCAGAAAACAAAACTA+TGG | 0.430644 | tig0030728:-35723 | Msa1444430:three_prime_UTR |
| CCTTCAATTCATTTAATTGT+CGG | 0.431451 | tig0030728:-35528 | Msa1444430:three_prime_UTR |
| TTTAATTGTCGGGAGTTTGT+CGG | 0.437137 | tig0030728:-35517 | Msa1444430:three_prime_UTR |
| CCGACAATTAAATGAATTGA+AGG | 0.437652 | tig0030728:+35528 | None:intergenic |
| TTATCACTTCCCTGCTTCCT+GGG | 0.438002 | tig0030728:-35884 | Msa1444430:CDS |
| ACTTCTGAAGCTGCTGCTGC+CGG | 0.440502 | tig0030728:-36920 | Msa1444430:CDS |
| GAACCTGCGAACCGTGGAGC+TGG | 0.451209 | tig0030728:-38503 | Msa1444430:CDS |
| TGGTTCTCAATGGCAGCATC+AGG | 0.451911 | tig0030728:+36026 | None:intergenic |
| CTCTGAGGTGCAGGCTGCTG+AGG | 0.452932 | tig0030728:+36866 | None:intergenic |
| ATCAATGCAGGGTGCATACC+AGG | 0.458389 | tig0030728:+38554 | None:intergenic |
| AATGGAATCAGGGTGTTGTA+TGG | 0.461274 | tig0030728:+38431 | None:intergenic |
| GCCCTGGCTGCAGGTCTTGG+TGG | 0.464321 | tig0030728:+36370 | None:intergenic |
| GCAATGGTGGCAACCAGTGG+TGG | 0.470017 | tig0030728:-35944 | Msa1444430:CDS |
| TGTGAAAGCCATCTTACAAT+CGG | 0.470728 | tig0030728:+36424 | None:intergenic |
| CCGGTAACATGTCTATCAAA+AGG | 0.474598 | tig0030728:+38458 | None:intergenic |
| GATTGTGGAACCCAGGAAGC+AGG | 0.475098 | tig0030728:+35874 | None:intergenic |
| GCAGCAGCAGCTTCAGAAGT+TGG | 0.476019 | tig0030728:+36923 | None:intergenic |
| TTCGCAGGTTCCTCAATTTG+TGG | 0.476969 | tig0030728:+38515 | None:intergenic |
| GGTGCATACCAGGAAACATT+TGG | 0.481967 | tig0030728:+38564 | None:intergenic |
| AATTTGCCGGCCTATCCGGC+TGG | 0.485860 | tig0030728:-38593 | Msa1444430:CDS |
| CAGGGTGTTGTATGGAAGTC+CGG | 0.489052 | tig0030728:+38439 | None:intergenic |
| TGTTCAACCAAGATGGATCA+AGG | 0.490896 | tig0030728:-36763 | Msa1444430:CDS |
| CCAGAAGCTGGCAGAGGCAA+TGG | 0.491181 | tig0030728:-35960 | Msa1444430:CDS |
| GTTGCCAATGCTCCTCCAGC+AGG | 0.493494 | tig0030728:-36319 | Msa1444430:intron |
| CTCAGAGACAAGTTGTTGTA+AGG | 0.495844 | tig0030728:-36850 | Msa1444430:CDS |
| AAATGTACCTCCTGCAGGGC+AGG | 0.497728 | tig0030728:-36344 | Msa1444430:CDS |
| GTTCACTTACCCACTCTAGA+AGG | 0.501018 | tig0030728:+35392 | None:intergenic |
| AATGAGAATGTCCCAGAAGC+TGG | 0.502270 | tig0030728:-35972 | Msa1444430:CDS |
| GCACGGTCTGCACCATTACC+AGG | 0.502582 | tig0030728:+36002 | None:intergenic |
| CAATGGTGGCAACCAGTGGT+GGG | 0.503431 | tig0030728:-35943 | Msa1444430:CDS |
| TGCACCCTGCATTGATTCCA+GGG | 0.504551 | tig0030728:-38547 | Msa1444430:CDS |
| TCCACCAAGACCTGCAGCCA+GGG | 0.504594 | tig0030728:-36371 | Msa1444430:CDS |
| GCTGAAAATGTACCTCCTGC+AGG | 0.507702 | tig0030728:-36349 | Msa1444430:CDS |
| CAAATTACTTCCCTGTGCCC+TGG | 0.507886 | tig0030728:+35633 | None:intergenic |
| GCTGCAGGTCTTGGTGGACG+AGG | 0.508079 | tig0030728:+36376 | None:intergenic |
| GTCAACCCTGGAATCAATGC+AGG | 0.510845 | tig0030728:+38542 | None:intergenic |
| CCGGCAAATTGGAAAATGTC+GGG | 0.512491 | tig0030728:+38606 | None:intergenic |
| GCTGCTGCCGGTGAAAATCA+GGG | 0.513650 | tig0030728:-36908 | Msa1444430:CDS |
| AAGCCAGCTCCACGGTTCGC+AGG | 0.514593 | tig0030728:+38500 | None:intergenic |
| GAAGTAATTTGTACTTCAGA+GGG | 0.516768 | tig0030728:-35621 | Msa1444430:three_prime_UTR |
| ACAACTTGTCTCTGAGGTGC+AGG | 0.518547 | tig0030728:+36857 | None:intergenic |
| CTCTGACACCGATTGTAAGA+TGG | 0.519517 | tig0030728:-36432 | Msa1444430:CDS |
| CCTTTACAATGCCCCACCAC+TGG | 0.522720 | tig0030728:+35931 | None:intergenic |
| TCGGTGTCAGAGCTCCAGTT+TGG | 0.523774 | tig0030728:+36443 | None:intergenic |
| ATGTGTTACAGATACCAAAC+TGG | 0.523883 | tig0030728:-36457 | Msa1444430:intron |
| TTTGCTACTTATGTTGAAGC+TGG | 0.525091 | tig0030728:-36801 | Msa1444430:CDS |
| GGCAGTTGTTAATCCACCCC+TGG | 0.528965 | tig0030728:-35599 | Msa1444430:three_prime_UTR |
| GTAGGTGTGCGGTAAGTCAA+TGG | 0.530263 | tig0030728:+38413 | None:intergenic |
| CATACCTGCTGGAGGAGCAT+TGG | 0.530298 | tig0030728:+36315 | None:intergenic |
| GGGAGAGGTTGTGAAGTAAA+CGG | 0.536857 | tig0030728:+39444 | None:intergenic |
| GTGGGTAAGTGAACTGATAG+TGG | 0.538300 | tig0030728:-35383 | Msa1444430:three_prime_UTR |
| CATTCTCATTCTCGATTGCA+CGG | 0.538860 | tig0030728:+35985 | None:intergenic |
| CCAGTGGTGGGGCATTGTAA+AGG | 0.540989 | tig0030728:-35931 | Msa1444430:CDS |
| GGAAGTAATTTGTACTTCAG+AGG | 0.541496 | tig0030728:-35622 | Msa1444430:three_prime_UTR |
| GTTGACTCCACCACAAATTG+AGG | 0.541577 | tig0030728:-38525 | Msa1444430:CDS |
| AATGGTGGCAACCAGTGGTG+GGG | 0.541711 | tig0030728:-35942 | Msa1444430:CDS |
| ATTGAGAACCAGCCTGGTAA+TGG | 0.544812 | tig0030728:-36014 | Msa1444430:CDS |
| TAATATCCAGCCGGATAGGC+CGG | 0.549385 | tig0030728:+38587 | None:intergenic |
| ATTACCAGGCTGGTTCTCAA+TGG | 0.550682 | tig0030728:+36016 | None:intergenic |
| AGCTATGGTGCCTTCTAGAG+TGG | 0.554870 | tig0030728:-35402 | Msa1444430:three_prime_UTR |
| TTGGTAATATCCAGCCGGAT+AGG | 0.559088 | tig0030728:+38583 | None:intergenic |
| ATCGCCACAAGATCCATCTC+AGG | 0.560810 | tig0030728:-39400 | Msa1444430:intron |
| GCAGGTTCCTCAATTTGTGG+TGG | 0.561832 | tig0030728:+38518 | None:intergenic |
| ATTGTGGAACCCAGGAAGCA+GGG | 0.566256 | tig0030728:+35875 | None:intergenic |
| GAAGAGGAAGAAGGTGGGAG+AGG | 0.566409 | tig0030728:+39429 | None:intergenic |
| AACATTTGGTAATATCCAGC+CGG | 0.568144 | tig0030728:+38578 | None:intergenic |
| GCCGGCAAATTGGAAAATGT+CGG | 0.569653 | tig0030728:+38605 | None:intergenic |
| CTGCTGCCGGTGAAAATCAG+GGG | 0.574488 | tig0030728:-36907 | Msa1444430:CDS |
| ACCAAGATGGATCAAGGCAG+AGG | 0.574890 | tig0030728:-36757 | Msa1444430:CDS |
| ATTTGTGGTGGAGTCAACCC+TGG | 0.577781 | tig0030728:+38530 | None:intergenic |
| GAGGCAATGGTGGCAACCAG+TGG | 0.581630 | tig0030728:-35947 | Msa1444430:CDS |
| TTTCTGCAAAACATGAGCTA+TGG | 0.581697 | tig0030728:-35417 | Msa1444430:three_prime_UTR |
| AATGTCCCAGAAGCTGGCAG+AGG | 0.582269 | tig0030728:-35966 | Msa1444430:CDS |
| GAAGCTGGCAGAGGCAATGG+TGG | 0.582333 | tig0030728:-35957 | Msa1444430:CDS |
| GATTTCTGCGAAGAGGAAGA+AGG | 0.583027 | tig0030728:+39420 | None:intergenic |
| TCCATATGATTGTGGAACCC+AGG | 0.583039 | tig0030728:+35867 | None:intergenic |
| CTGAAAATGTACCTCCTGCA+GGG | 0.583817 | tig0030728:-36348 | Msa1444430:CDS |
| AAGTAAACGGCACCGTTTCG+GGG | 0.585571 | tig0030728:+39457 | None:intergenic |
| ACCAATCATAAACAGACACC+AGG | 0.588818 | tig0030728:+35581 | None:intergenic |
| TGTACCTCCTGCAGGGCAGG+TGG | 0.590447 | tig0030728:-36341 | Msa1444430:CDS |
| GCAACCACCTGCCCTGCAGG+AGG | 0.610954 | tig0030728:+36337 | None:intergenic |
| GCAGGTCTTGGTGGACGAGG+AGG | 0.611372 | tig0030728:+36379 | None:intergenic |
| GGTCTGCACCATTACCAGGC+TGG | 0.611992 | tig0030728:+36006 | None:intergenic |
| TTTATGGCTTCCAGGGCACA+GGG | 0.614928 | tig0030728:-35643 | Msa1444430:three_prime_UTR |
| ACTACCTGAGATGGATCTTG+TGG | 0.615374 | tig0030728:+39396 | None:intergenic |
| ATTTATCAATCAAACTACAA+TGG | 0.620548 | tig0030728:-39490 | Msa1444430:exon |
| GCTATGGTGCCTTCTAGAGT+GGG | 0.623911 | tig0030728:-35401 | Msa1444430:three_prime_UTR |
| GCTGCCATTGAGAACCAGCC+TGG | 0.626238 | tig0030728:-36020 | Msa1444430:CDS |
| TTCTGCGAAGAGGAAGAAGG+TGG | 0.626579 | tig0030728:+39423 | None:intergenic |
| TAAGTCAATCCATATGATTG+TGG | 0.631095 | tig0030728:+35859 | None:intergenic |
| TTGTGGCGATTTCTGCGAAG+AGG | 0.631216 | tig0030728:+39413 | None:intergenic |
| GCGGTAAGTCAATGGAATCA+GGG | 0.639590 | tig0030728:+38421 | None:intergenic |
| ATTGAGGAACCTGCGAACCG+TGG | 0.639776 | tig0030728:-38509 | Msa1444430:CDS |
| TCTGCGAAGAGGAAGAAGGT+GGG | 0.642845 | tig0030728:+39424 | None:intergenic |
| GCATACCAGAAAATAGGAGA+GGG | 0.647009 | tig0030728:-35824 | Msa1444430:three_prime_UTR |
| AGTAAACGGCACCGTTTCGG+GGG | 0.647083 | tig0030728:+39458 | None:intergenic |
| TCATAAACAGACACCAGGGG+TGG | 0.659478 | tig0030728:+35586 | None:intergenic |
| AGCATACCAGAAAATAGGAG+AGG | 0.665811 | tig0030728:-35825 | Msa1444430:three_prime_UTR |
| CTTACAACAACTTGTCTCTG+AGG | 0.667166 | tig0030728:+36851 | None:intergenic |
| CAGCATATAAGCCAGCTCCA+CGG | 0.674149 | tig0030728:+38492 | None:intergenic |
| TCAACCCTGGAATCAATGCA+GGG | 0.679896 | tig0030728:+38543 | None:intergenic |
| AAGCAAATCATACCTGCTGG+AGG | 0.681082 | tig0030728:+36307 | None:intergenic |
| AATTGTCGGGAGTTTGTCGG+CGG | 0.695279 | tig0030728:-35514 | Msa1444430:three_prime_UTR |
| AAGCCACTTACGTAGGTGTG+CGG | 0.702356 | tig0030728:+38402 | None:intergenic |
| CAATCATAAACAGACACCAG+GGG | 0.720298 | tig0030728:+35583 | None:intergenic |
| AAGTAATTTGTACTTCAGAG+GGG | 0.729284 | tig0030728:-35620 | Msa1444430:three_prime_UTR |
| CCAATCATAAACAGACACCA+GGG | 0.734719 | tig0030728:+35582 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTATTATAAATACTAAAT+AGG | - | tig0030728:35919-35938 | Msa1444430:CDS | 10.0% |
| !! | GTTATTATAAATACTAAATA+GGG | - | tig0030728:35920-35939 | Msa1444430:CDS | 10.0% |
| !! | ATATATTTATACCTTTATAT+AGG | - | tig0030728:36788-36807 | Msa1444430:CDS | 10.0% |
| !!! | ATTTTAAACAATTCATTTTT+TGG | - | tig0030728:37953-37972 | Msa1444430:intron | 10.0% |
| !!! | TTTTAAACAATTCATTTTTT+GGG | - | tig0030728:37954-37973 | Msa1444430:intron | 10.0% |
| !!! | TGTATAATTTTTTAATTGAT+AGG | - | tig0030728:39556-39575 | Msa1444430:five_prime_UTR | 10.0% |
| !!! | TTTTTTAGATTTGAGATTTT+TGG | + | tig0030728:35453-35472 | None:intergenic | 15.0% |
| !! | TAGTTTGATTGATAAATTTA+GGG | + | tig0030728:35506-35525 | None:intergenic | 15.0% |
| !!! | ATTGTTATTTGTTATTAAAG+AGG | - | tig0030728:35978-35997 | Msa1444430:CDS | 15.0% |
| !!! | TCATTTTATTAAATTATCAC+AGG | - | tig0030728:36098-36117 | Msa1444430:intron | 15.0% |
| !! | GTAAACATATATATATATTG+TGG | - | tig0030728:36206-36225 | Msa1444430:intron | 15.0% |
| !! | TGTCAAAATATAAAATAGAA+AGG | - | tig0030728:37249-37268 | Msa1444430:intron | 15.0% |
| !!! | TTTTGGTATAATATTTGATT+AGG | - | tig0030728:37450-37469 | Msa1444430:intron | 15.0% |
| !!! | TTTAACGTATTTAATTTTAG+TGG | - | tig0030728:37989-38008 | Msa1444430:intron | 15.0% |
| !! | AATTGAATAGACAATAATAA+GGG | + | tig0030728:38420-38439 | None:intergenic | 15.0% |
| !! | AAATTGAATAGACAATAATA+AGG | + | tig0030728:38421-38440 | None:intergenic | 15.0% |
| !! | GAAATGAAAATTTAACTCAT+TGG | + | tig0030728:35416-35435 | None:intergenic | 20.0% |
| !! | GTAGTTTGATTGATAAATTT+AGG | + | tig0030728:35507-35526 | None:intergenic | 20.0% |
| !! | ATTTATCAATCAAACTACAA+TGG | - | tig0030728:35509-35528 | Msa1444430:three_prime_UTR | 20.0% |
| !! | AATCAATTAAACGAACAATT+AGG | + | tig0030728:35674-35693 | None:intergenic | 20.0% |
| !! | AATGGAAAAAAATTTCAAGA+TGG | - | tig0030728:35812-35831 | Msa1444430:three_prime_UTR | 20.0% |
| !! | ATGGAAAAAAATTTCAAGAT+GGG | - | tig0030728:35813-35832 | Msa1444430:three_prime_UTR | 20.0% |
| !! | ACACAAAAAAATGCTAAATT+AGG | + | tig0030728:35868-35887 | None:intergenic | 20.0% |
| !!! | TAAATAGGGTTTTAAATAGA+GGG | - | tig0030728:35934-35953 | Msa1444430:CDS | 20.0% |
| !!! | GTAAAAAGGGTATAAAATAA+AGG | + | tig0030728:36251-36270 | None:intergenic | 20.0% |
| !!! | AGCATATTTTATAGCTTTTT+TGG | - | tig0030728:36754-36773 | Msa1444430:CDS | 20.0% |
| !!! | ATTTTGTAACATGGATATAT+TGG | - | tig0030728:36869-36888 | Msa1444430:CDS | 20.0% |
| !! | GATATATTGGAAAATACATT+AGG | - | tig0030728:36882-36901 | Msa1444430:CDS | 20.0% |
| !! | TTTGTAATTAAATGTGAAAC+AGG | + | tig0030728:37011-37030 | None:intergenic | 20.0% |
| !! | ATTATACCAAAAAACTATAG+TGG | + | tig0030728:37442-37461 | None:intergenic | 20.0% |
| !! | TAATAGGTCATATTTGTAAA+AGG | - | tig0030728:37671-37690 | Msa1444430:intron | 20.0% |
| !!! | TAGTAATGCTTTTTTTTAAC+TGG | - | tig0030728:38032-38051 | Msa1444430:intron | 20.0% |
| !!! | AGTAATGCTTTTTTTTAACT+GGG | - | tig0030728:38033-38052 | Msa1444430:intron | 20.0% |
| !! | ATTGAATAGACAATAATAAG+GGG | + | tig0030728:38419-38438 | None:intergenic | 20.0% |
| !! | GTCATAACTAATACATATTT+AGG | - | tig0030728:39242-39261 | Msa1444430:intron | 20.0% |
| !! | AACTATGGTGATAATTTATA+AGG | - | tig0030728:39291-39310 | Msa1444430:intron | 20.0% |
| ! | AATTTAACTCATTGGATTTG+AGG | + | tig0030728:35408-35427 | None:intergenic | 25.0% |
| ! | AATAAATTTACAGAGCGAAA+TGG | - | tig0030728:35794-35813 | Msa1444430:three_prime_UTR | 25.0% |
| !!! | CTAAATAGGGTTTTAAATAG+AGG | - | tig0030728:35933-35952 | Msa1444430:CDS | 25.0% |
| !!! | TTTGTTATTAAAGAGGAATG+TGG | - | tig0030728:35985-36004 | Msa1444430:CDS | 25.0% |
| ! | AAGCACAAAATGTGTAAAAA+GGG | + | tig0030728:36264-36283 | None:intergenic | 25.0% |
| ! | TTGCTTTGTAAATATGTGAA+TGG | - | tig0030728:36282-36301 | Msa1444430:intron | 25.0% |
| ! | TGCTTTGTAAATATGTGAAT+GGG | - | tig0030728:36283-36302 | Msa1444430:intron | 25.0% |
| ! | TTCTGAATTCATGTGTTAAA+TGG | - | tig0030728:36334-36353 | Msa1444430:CDS | 25.0% |
| !! | TTTAAGCGAATTTTGTAACA+TGG | - | tig0030728:36860-36879 | Msa1444430:CDS | 25.0% |
| ! | AGTAAAAAAGGAAAGAGAAA+TGG | + | tig0030728:37381-37400 | None:intergenic | 25.0% |
| ! | ATAGTCGAATCAAGTAAAAA+AGG | + | tig0030728:37393-37412 | None:intergenic | 25.0% |
| !!! | TGTTATCCACTATAGTTTTT+TGG | - | tig0030728:37433-37452 | Msa1444430:intron | 25.0% |
| ! | CAAAGAACTTCAAAAGAATA+TGG | + | tig0030728:37825-37844 | None:intergenic | 25.0% |
| !! | ACCGTTTATTAATTTCCTTT+TGG | - | tig0030728:38828-38847 | Msa1444430:intron | 25.0% |
| ! | CCCAAAAGGAAATTAATAAA+CGG | + | tig0030728:38832-38851 | None:intergenic | 25.0% |
| !! | CCGTTTATTAATTTCCTTTT+GGG | - | tig0030728:38829-38848 | Msa1444430:intron | 25.0% |
| !!! | TTATTAATTTCCTTTTGGGA+TGG | - | tig0030728:38833-38852 | Msa1444430:intron | 25.0% |
| !!! | TATTAATTTCCTTTTGGGAT+GGG | - | tig0030728:38834-38853 | Msa1444430:intron | 25.0% |
| ! | CAATAGTTAATGACAAACAA+AGG | + | tig0030728:38941-38960 | None:intergenic | 25.0% |
| !! | CTTTGTTTGTCATTAACTAT+TGG | - | tig0030728:38939-38958 | Msa1444430:intron | 25.0% |
| ! | TAAATCCAAAAACAATCATC+TGG | + | tig0030728:39098-39117 | None:intergenic | 25.0% |
| !!! | GTCATTTTTGTATCATTACT+TGG | - | tig0030728:39315-39334 | Msa1444430:intron | 25.0% |
| !!! | TGTTGATAGAACAGTTTTTA+TGG | - | tig0030728:39340-39359 | Msa1444430:intron | 25.0% |
| ! | CCTTCAATTCATTTAATTGT+CGG | - | tig0030728:39471-39490 | Msa1444430:CDS | 25.0% |
| ! | CTTCAATTCATTTAATTGTC+GGG | - | tig0030728:39472-39491 | Msa1444430:CDS | 25.0% |
| ! | TAAAAAATTATACAGCACTC+AGG | + | tig0030728:39550-39569 | None:intergenic | 25.0% |
| !!! | AGATTTTTGGTAGTTGAAGA+AGG | + | tig0030728:35440-35459 | None:intergenic | 30.0% |
| GAGTTCAATTGCATCAAAAT+GGG | + | tig0030728:35716-35735 | None:intergenic | 30.0% | |
| TGAGTTCAATTGCATCAAAA+TGG | + | tig0030728:35717-35736 | None:intergenic | 30.0% | |
| TAGGTTGTTAGCACATAAAA+TGG | + | tig0030728:35849-35868 | None:intergenic | 30.0% | |
| TTTAATGTAATCACGTGTCA+TGG | + | tig0030728:36073-36092 | None:intergenic | 30.0% | |
| CAAGCACAAAATGTGTAAAA+AGG | + | tig0030728:36265-36284 | None:intergenic | 30.0% | |
| TGAATTCATGTGTTAAATGG+TGG | - | tig0030728:36337-36356 | Msa1444430:CDS | 30.0% | |
| TGTCTATCAAAAGGATTAAC+AGG | + | tig0030728:36535-36554 | None:intergenic | 30.0% | |
| ATCACTAAGTTTCACATACA+AGG | + | tig0030728:36691-36710 | None:intergenic | 30.0% | |
| TTTATACCTTTATATAGGCC+CGG | - | tig0030728:36793-36812 | Msa1444430:CDS | 30.0% | |
| GAAATAAAGTGAAAACAACG+TGG | + | tig0030728:37040-37059 | None:intergenic | 30.0% | |
| TAGAAATATCATGGTCTGTT+TGG | + | tig0030728:37179-37198 | None:intergenic | 30.0% | |
| AAACAGACCATGATATTTCT+AGG | - | tig0030728:37178-37197 | Msa1444430:intron | 30.0% | |
| TGAAAGTCCTAGAAATATCA+TGG | + | tig0030728:37188-37207 | None:intergenic | 30.0% | |
| ! | TAGGACTTTCAATATTGACT+GGG | - | tig0030728:37197-37216 | Msa1444430:intron | 30.0% |
| CAATGGTTATTGTGCTTATT+TGG | - | tig0030728:37224-37243 | Msa1444430:intron | 30.0% | |
| !! | TGTCAGACATAATGGTTTTA+TGG | - | tig0030728:37341-37360 | Msa1444430:intron | 30.0% |
| ! | TCACATGATGACTTCTAAAA+GGG | - | tig0030728:37576-37595 | Msa1444430:intron | 30.0% |
| ATTTATTACATACTCTGTCC+AGG | + | tig0030728:37647-37666 | None:intergenic | 30.0% | |
| TCTAAGCATTCAAGGAAAAT+TGG | - | tig0030728:37702-37721 | Msa1444430:intron | 30.0% | |
| TGATCATATAAGAATGCCTA+AGG | + | tig0030728:37783-37802 | None:intergenic | 30.0% | |
| GAAGTTCTTTGTTACATCAT+TGG | - | tig0030728:37834-37853 | Msa1444430:intron | 30.0% | |
| !!! | AATGCTTTTTTTTAACTGGG+TGG | - | tig0030728:38036-38055 | Msa1444430:intron | 30.0% |
| ! | ATCTTTTTGTTCAACCAAGA+TGG | - | tig0030728:38229-38248 | Msa1444430:intron | 30.0% |
| CAAGAACAGCGAATAAAATA+AGG | + | tig0030728:38276-38295 | None:intergenic | 30.0% | |
| ! | CTTTTATTACCAATGTTTCC+CGG | + | tig0030728:38757-38776 | None:intergenic | 30.0% |
| ! | AGTTCCATGTATTTGAAACA+GGG | + | tig0030728:38863-38882 | None:intergenic | 30.0% |
| TAAGTCAATCCATATGATTG+TGG | + | tig0030728:39143-39162 | None:intergenic | 30.0% | |
| CTATACACCTTATCATATTC+GGG | + | tig0030728:39205-39224 | None:intergenic | 30.0% | |
| GCTATACACCTTATCATATT+CGG | + | tig0030728:39206-39225 | None:intergenic | 30.0% | |
| ! | GAAGTAATTTGTACTTCAGA+GGG | - | tig0030728:39378-39397 | Msa1444430:intron | 30.0% |
| ! | AAGTAATTTGTACTTCAGAG+GGG | - | tig0030728:39379-39398 | Msa1444430:intron | 30.0% |
| CCGACAATTAAATGAATTGA+AGG | + | tig0030728:39474-39493 | None:intergenic | 30.0% | |
| ATTGCAAAAACTACCTGAGA+TGG | + | tig0030728:35615-35634 | None:intergenic | 35.0% | |
| ! | CAAAATGGGTATCGTGAATT+GGG | + | tig0030728:35702-35721 | None:intergenic | 35.0% |
| ! | TCAAAATGGGTATCGTGAAT+TGG | + | tig0030728:35703-35722 | None:intergenic | 35.0% |
| ATGCAATTGAACTCAAGCTA+GGG | - | tig0030728:35722-35741 | Msa1444430:three_prime_UTR | 35.0% | |
| ! | AACATTTGGTAATATCCAGC+CGG | + | tig0030728:36424-36443 | None:intergenic | 35.0% |
| GGATATTACCAAATGTTTCC+TGG | - | tig0030728:36427-36446 | Msa1444430:CDS | 35.0% | |
| ! | CCTTTTGATAGACATGTTAC+CGG | - | tig0030728:36541-36560 | Msa1444430:intron | 35.0% |
| AAATAGAAAGCCACTTACGT+AGG | + | tig0030728:36607-36626 | None:intergenic | 35.0% | |
| TTAGTGATAGCACGATTTAG+AGG | - | tig0030728:36703-36722 | Msa1444430:intron | 35.0% | |
| GTTTAAACTGTGCTATAACC+GGG | + | tig0030728:36814-36833 | None:intergenic | 35.0% | |
| CGTTTAAACTGTGCTATAAC+CGG | + | tig0030728:36815-36834 | None:intergenic | 35.0% | |
| CGGTTATAGCACAGTTTAAA+CGG | - | tig0030728:36813-36832 | Msa1444430:CDS | 35.0% | |
| ! | GTTCCATACTATGTTTCTGT+CGG | - | tig0030728:36932-36951 | Msa1444430:intron | 35.0% |
| ! | TTCCATACTATGTTTCTGTC+GGG | - | tig0030728:36933-36952 | Msa1444430:intron | 35.0% |
| !!! | CTGAACAAACTTTTGAGATC+GGG | + | tig0030728:37062-37081 | None:intergenic | 35.0% |
| !!! | CCTGAACAAACTTTTGAGAT+CGG | + | tig0030728:37063-37082 | None:intergenic | 35.0% |
| CTAGGACTTTCAATATTGAC+TGG | - | tig0030728:37196-37215 | Msa1444430:intron | 35.0% | |
| ! | AATATTGACTGGGTCAACAA+TGG | - | tig0030728:37207-37226 | Msa1444430:intron | 35.0% |
| ATGTGACAAAGGAGGTTTAA+TGG | - | tig0030728:37310-37329 | Msa1444430:intron | 35.0% | |
| AAACCATTATGTCTGACAAG+TGG | + | tig0030728:37339-37358 | None:intergenic | 35.0% | |
| !!! | CAGACATAATGGTTTTATGG+TGG | - | tig0030728:37344-37363 | Msa1444430:intron | 35.0% |
| ! | GTTTTATGGTGGCATCAAAA+TGG | - | tig0030728:37355-37374 | Msa1444430:intron | 35.0% |
| AAGTTGCAAAAGCTAGACAT+AGG | - | tig0030728:37547-37566 | Msa1444430:intron | 35.0% | |
| CTCACATGATGACTTCTAAA+AGG | - | tig0030728:37575-37594 | Msa1444430:intron | 35.0% | |
| ! | CACATGATGACTTCTAAAAG+GGG | - | tig0030728:37577-37596 | Msa1444430:intron | 35.0% |
| CATAAACCTAAGGATGTGTT+AGG | - | tig0030728:37600-37619 | Msa1444430:intron | 35.0% | |
| ATTCAGCATCTAAGCATTCA+AGG | - | tig0030728:37694-37713 | Msa1444430:intron | 35.0% | |
| ! | TTTGCTACTTATGTTGAAGC+TGG | - | tig0030728:38198-38217 | Msa1444430:intron | 35.0% |
| ATGTGTTACAGATACCAAAC+TGG | - | tig0030728:38542-38561 | Msa1444430:CDS | 35.0% | |
| TGTGAAAGCCATCTTACAAT+CGG | + | tig0030728:38578-38597 | None:intergenic | 35.0% | |
| GTTTCCCTGTTTCAAATACA+TGG | - | tig0030728:38856-38875 | Msa1444430:intron | 35.0% | |
| ! | CAGTTCCATGTATTTGAAAC+AGG | + | tig0030728:38864-38883 | None:intergenic | 35.0% |
| CTGTTTCAAATACATGGAAC+TGG | - | tig0030728:38862-38881 | Msa1444430:intron | 35.0% | |
| TTGTCATTAACTATTGGCAG+AGG | - | tig0030728:38945-38964 | Msa1444430:intron | 35.0% | |
| TGTCATTAACTATTGGCAGA+GGG | - | tig0030728:38946-38965 | Msa1444430:intron | 35.0% | |
| ! | GAGATCCAGATGATTGTTTT+TGG | - | tig0030728:39090-39109 | Msa1444430:intron | 35.0% |
| TCCAGCAGAAAACAAAACTA+TGG | - | tig0030728:39276-39295 | Msa1444430:intron | 35.0% | |
| !!! | ACCATAGTTTTGTTTTCTGC+TGG | + | tig0030728:39280-39299 | None:intergenic | 35.0% |
| ! | AACAGTTTTTATGGCTTCCA+GGG | - | tig0030728:39349-39368 | Msa1444430:intron | 35.0% |
| ! | GGAAGTAATTTGTACTTCAG+AGG | - | tig0030728:39377-39396 | Msa1444430:intron | 35.0% |
| TTTAATTGTCGGGAGTTTGT+CGG | - | tig0030728:39482-39501 | Msa1444430:exon | 35.0% | |
| TTTCTGCAAAACATGAGCTA+TGG | - | tig0030728:39582-39601 | Msa1444430:five_prime_UTR | 35.0% | |
| TAGGCATGAAACTTGCGTAA+CGG | + | tig0030728:35655-35674 | None:intergenic | 40.0% | |
| GATGCAATTGAACTCAAGCT+AGG | - | tig0030728:35721-35740 | Msa1444430:three_prime_UTR | 40.0% | |
| AATGTAATCACGTGTCATGG+TGG | + | tig0030728:36070-36089 | None:intergenic | 40.0% | |
| TGTCAATGCTTCACAATACG+TGG | - | tig0030728:36159-36178 | Msa1444430:intron | 40.0% | |
| GGGTATAAAATAAAGGTCCG+TGG | + | tig0030728:36244-36263 | None:intergenic | 40.0% | |
| CTTCTGTGTATTGTAGTCTC+AGG | - | tig0030728:36369-36388 | Msa1444430:CDS | 40.0% | |
| CCGGTAACATGTCTATCAAA+AGG | + | tig0030728:36544-36563 | None:intergenic | 40.0% | |
| !! | AATGGAATCAGGGTGTTGTA+TGG | + | tig0030728:36571-36590 | None:intergenic | 40.0% |
| CTATAACCGGGCCTATATAA+AGG | + | tig0030728:36802-36821 | None:intergenic | 40.0% | |
| ! | TCCATACTATGTTTCTGTCG+GGG | - | tig0030728:36934-36953 | Msa1444430:intron | 40.0% |
| TTCTCAAACCAAACAGACTC+TGG | + | tig0030728:36968-36987 | None:intergenic | 40.0% | |
| ! | CCGATCTCAAAAGTTTGTTC+AGG | - | tig0030728:37060-37079 | Msa1444430:intron | 40.0% |
| CAACTGCTAGAATGTGACAA+AGG | - | tig0030728:37299-37318 | Msa1444430:intron | 40.0% | |
| ! | CTAAAAGGGGCATAAACCTA+AGG | - | tig0030728:37590-37609 | Msa1444430:intron | 40.0% |
| ACCTAAGGATGTGTTAGGTA+CGG | - | tig0030728:37605-37624 | Msa1444430:intron | 40.0% | |
| !!! | GGGACTGTTTTAAGTTTTCC+TGG | - | tig0030728:37626-37645 | Msa1444430:intron | 40.0% |
| ! | GTGCATATGAGTTGAACACA+CGG | + | tig0030728:37901-37920 | None:intergenic | 40.0% |
| GGGTGGTCATATTTATCAGT+AGG | - | tig0030728:38053-38072 | Msa1444430:intron | 40.0% | |
| CTTACAACAACTTGTCTCTG+AGG | + | tig0030728:38151-38170 | None:intergenic | 40.0% | |
| CTCAGAGACAAGTTGTTGTA+AGG | - | tig0030728:38149-38168 | Msa1444430:intron | 40.0% | |
| TGTTCAACCAAGATGGATCA+AGG | - | tig0030728:38236-38255 | Msa1444430:intron | 40.0% | |
| ATGCGTGATTGTCACATATC+AGG | - | tig0030728:38356-38375 | Msa1444430:intron | 40.0% | |
| CACATATCAGGTCTCAAACT+CGG | - | tig0030728:38368-38387 | Msa1444430:intron | 40.0% | |
| ACATATCAGGTCTCAAACTC+GGG | - | tig0030728:38369-38388 | Msa1444430:intron | 40.0% | |
| AGTAAGCAAATCATACCTGC+TGG | + | tig0030728:38698-38717 | None:intergenic | 40.0% | |
| !! | GAGTTTGCAGTTGTTTCTGT+TGG | - | tig0030728:38731-38750 | Msa1444430:intron | 40.0% |
| ! | ACATGGAACTGGTTTCTCTA+TGG | - | tig0030728:38873-38892 | Msa1444430:intron | 40.0% |
| CATTCTCATTCTCGATTGCA+CGG | + | tig0030728:39017-39036 | None:intergenic | 40.0% | |
| GTGACAGCATACCAGAAAAT+AGG | - | tig0030728:39169-39188 | Msa1444430:intron | 40.0% | |
| AGCATACCAGAAAATAGGAG+AGG | - | tig0030728:39174-39193 | Msa1444430:intron | 40.0% | |
| GCATACCAGAAAATAGGAGA+GGG | - | tig0030728:39175-39194 | Msa1444430:intron | 40.0% | |
| ! | GAAAACCCTCTCCTATTTTC+TGG | + | tig0030728:39183-39202 | None:intergenic | 40.0% |
| ! | GGGTTTTCCCGAATATGATA+AGG | - | tig0030728:39195-39214 | Msa1444430:intron | 40.0% |
| ! | GAACAGTTTTTATGGCTTCC+AGG | - | tig0030728:39348-39367 | Msa1444430:intron | 40.0% |
| CAATCATAAACAGACACCAG+GGG | + | tig0030728:39419-39438 | None:intergenic | 40.0% | |
| CCAATCATAAACAGACACCA+GGG | + | tig0030728:39420-39439 | None:intergenic | 40.0% | |
| ACCAATCATAAACAGACACC+AGG | + | tig0030728:39421-39440 | None:intergenic | 40.0% | |
| TGAAGTAAACGGCACCGTTT+CGG | + | tig0030728:35547-35566 | None:intergenic | 45.0% | |
| GGGAGAGGTTGTGAAGTAAA+CGG | + | tig0030728:35558-35577 | None:intergenic | 45.0% | |
| GATTTCTGCGAAGAGGAAGA+AGG | + | tig0030728:35582-35601 | None:intergenic | 45.0% | |
| ACTACCTGAGATGGATCTTG+TGG | + | tig0030728:35606-35625 | None:intergenic | 45.0% | |
| !!! | AGGGTTTTAAATAGAGGGCG+CGG | - | tig0030728:35939-35958 | Msa1444430:CDS | 45.0% |
| CCGGCAAATTGGAAAATGTC+GGG | + | tig0030728:36396-36415 | None:intergenic | 45.0% | |
| ! | CCCGACATTTTCCAATTTGC+CGG | - | tig0030728:36393-36412 | Msa1444430:CDS | 45.0% |
| GCCGGCAAATTGGAAAATGT+CGG | + | tig0030728:36397-36416 | None:intergenic | 45.0% | |
| ! | TTGGTAATATCCAGCCGGAT+AGG | + | tig0030728:36419-36438 | None:intergenic | 45.0% |
| GGTGCATACCAGGAAACATT+TGG | + | tig0030728:36438-36457 | None:intergenic | 45.0% | |
| TCAACCCTGGAATCAATGCA+GGG | + | tig0030728:36459-36478 | None:intergenic | 45.0% | |
| ! | GTTGACTCCACCACAAATTG+AGG | - | tig0030728:36474-36493 | Msa1444430:intron | 45.0% |
| TTCGCAGGTTCCTCAATTTG+TGG | + | tig0030728:36487-36506 | None:intergenic | 45.0% | |
| GCGGTAAGTCAATGGAATCA+GGG | + | tig0030728:36581-36600 | None:intergenic | 45.0% | |
| TGCGGTAAGTCAATGGAATC+AGG | + | tig0030728:36582-36601 | None:intergenic | 45.0% | |
| ACCCCGACAGAAACATAGTA+TGG | + | tig0030728:36938-36957 | None:intergenic | 45.0% | |
| TGAACTGTCCAGAGTCTGTT+TGG | - | tig0030728:36957-36976 | Msa1444430:intron | 45.0% | |
| CTGCTAGAATGTGACAAAGG+AGG | - | tig0030728:37302-37321 | Msa1444430:intron | 45.0% | |
| ! | CTGCCACTTGTCAGACATAA+TGG | - | tig0030728:37333-37352 | Msa1444430:intron | 45.0% |
| GGATAACATGCTGCTAATGC+AGG | + | tig0030728:37421-37440 | None:intergenic | 45.0% | |
| CCTAAGGATGTGTTAGGTAC+GGG | - | tig0030728:37606-37625 | Msa1444430:intron | 45.0% | |
| TGGACCTGATTCTGATTTCC+TGG | - | tig0030728:37722-37741 | Msa1444430:intron | 45.0% | |
| GCTACCAGGAAATCAGAATC+AGG | + | tig0030728:37729-37748 | None:intergenic | 45.0% | |
| ! | CTCTGACACCGATTGTAAGA+TGG | - | tig0030728:38567-38586 | Msa1444430:CDS | 45.0% |
| CTGAAAATGTACCTCCTGCA+GGG | - | tig0030728:38651-38670 | Msa1444430:intron | 45.0% | |
| AAGCAAATCATACCTGCTGG+AGG | + | tig0030728:38695-38714 | None:intergenic | 45.0% | |
| !! | TTGCAGTTGTTTCTGTTGGC+CGG | - | tig0030728:38735-38754 | Msa1444430:intron | 45.0% |
| ! | GGAACTGGTTTCTCTATGGA+AGG | - | tig0030728:38877-38896 | Msa1444430:intron | 45.0% |
| ! | ATTACCAGGCTGGTTCTCAA+TGG | + | tig0030728:38986-39005 | None:intergenic | 45.0% |
| ATTGAGAACCAGCCTGGTAA+TGG | - | tig0030728:38985-39004 | Msa1444430:intron | 45.0% | |
| AATGAGAATGTCCCAGAAGC+TGG | - | tig0030728:39027-39046 | Msa1444430:intron | 45.0% | |
| TTTATCACTTCCCTGCTTCC+TGG | - | tig0030728:39114-39133 | Msa1444430:intron | 45.0% | |
| TTATCACTTCCCTGCTTCCT+GGG | - | tig0030728:39115-39134 | Msa1444430:intron | 45.0% | |
| TCCTGGGTTCCACAATCATA+TGG | - | tig0030728:39131-39150 | Msa1444430:intron | 45.0% | |
| TCCATATGATTGTGGAACCC+AGG | + | tig0030728:39135-39154 | None:intergenic | 45.0% | |
| CCCTGGTGTCTGTTTATGAT+TGG | - | tig0030728:39417-39436 | Msa1444430:CDS | 45.0% | |
| GTTCACTTACCCACTCTAGA+AGG | + | tig0030728:39610-39629 | None:intergenic | 45.0% | |
| GTGGGTAAGTGAACTGATAG+TGG | - | tig0030728:39616-39635 | Msa1444430:five_prime_UTR | 45.0% | |
| !! | TATGTAATAAATTAATTAAT+AGG | - | tig0030728:37655-37674 | Msa1444430:intron | 5.0% |
| AAGTAAACGGCACCGTTTCG+GGG | + | tig0030728:35545-35564 | None:intergenic | 50.0% | |
| GAAGTAAACGGCACCGTTTC+GGG | + | tig0030728:35546-35565 | None:intergenic | 50.0% | |
| TCTGCGAAGAGGAAGAAGGT+GGG | + | tig0030728:35578-35597 | None:intergenic | 50.0% | |
| TTCTGCGAAGAGGAAGAAGG+TGG | + | tig0030728:35579-35598 | None:intergenic | 50.0% | |
| TTGTGGCGATTTCTGCGAAG+AGG | + | tig0030728:35589-35608 | None:intergenic | 50.0% | |
| ATCGCCACAAGATCCATCTC+AGG | - | tig0030728:35599-35618 | Msa1444430:three_prime_UTR | 50.0% | |
| TTCCAATTTGCCGGCCTATC+CGG | - | tig0030728:36402-36421 | Msa1444430:CDS | 50.0% | |
| TAATATCCAGCCGGATAGGC+CGG | + | tig0030728:36415-36434 | None:intergenic | 50.0% | |
| ATCAATGCAGGGTGCATACC+AGG | + | tig0030728:36448-36467 | None:intergenic | 50.0% | |
| !! | ATGCACCCTGCATTGATTCC+AGG | - | tig0030728:36451-36470 | Msa1444430:intron | 50.0% |
| !! | TGCACCCTGCATTGATTCCA+GGG | - | tig0030728:36452-36471 | Msa1444430:intron | 50.0% |
| GTCAACCCTGGAATCAATGC+AGG | + | tig0030728:36460-36479 | None:intergenic | 50.0% | |
| ! | ATTTGTGGTGGAGTCAACCC+TGG | + | tig0030728:36472-36491 | None:intergenic | 50.0% |
| GCAGGTTCCTCAATTTGTGG+TGG | + | tig0030728:36484-36503 | None:intergenic | 50.0% | |
| CAGCATATAAGCCAGCTCCA+CGG | + | tig0030728:36510-36529 | None:intergenic | 50.0% | |
| !! | CAGGGTGTTGTATGGAAGTC+CGG | + | tig0030728:36563-36582 | None:intergenic | 50.0% |
| GTAGGTGTGCGGTAAGTCAA+TGG | + | tig0030728:36589-36608 | None:intergenic | 50.0% | |
| TTACCGCACACCTACGTAAG+TGG | - | tig0030728:36594-36613 | Msa1444430:intron | 50.0% | |
| AAGCCACTTACGTAGGTGTG+CGG | + | tig0030728:36600-36619 | None:intergenic | 50.0% | |
| CCCGTACCTAACACATCCTT+AGG | + | tig0030728:37609-37628 | None:intergenic | 50.0% | |
| ! | TGGTCTTGGGGGTAAACCTT+AGG | - | tig0030728:37764-37783 | Msa1444430:intron | 50.0% |
| ! | CATGCTCTGAATGGCACTAG+TGG | + | tig0030728:37877-37896 | None:intergenic | 50.0% |
| ! | ACACACGGTCATGCTCTGAA+TGG | + | tig0030728:37886-37905 | None:intergenic | 50.0% |
| ! | TGCTTGCCCCTGATTTTCAC+CGG | + | tig0030728:38101-38120 | None:intergenic | 50.0% |
| !! | ACAACTTGTCTCTGAGGTGC+AGG | + | tig0030728:38145-38164 | None:intergenic | 50.0% |
| ACCAAGATGGATCAAGGCAG+AGG | - | tig0030728:38242-38261 | Msa1444430:intron | 50.0% | |
| !! | AGGAGGTACATTTTCAGCCC+TGG | + | tig0030728:38648-38667 | None:intergenic | 50.0% |
| GCTGAAAATGTACCTCCTGC+AGG | - | tig0030728:38650-38669 | Msa1444430:intron | 50.0% | |
| !! | TGCAGTTGTTTCTGTTGGCC+GGG | - | tig0030728:38736-38755 | Msa1444430:intron | 50.0% |
| TTCTGTTGGCCGGGAAACAT+TGG | - | tig0030728:38745-38764 | Msa1444430:intron | 50.0% | |
| ACAGGGAAACCCATCCCAAA+AGG | + | tig0030728:38846-38865 | None:intergenic | 50.0% | |
| TGGTTCTCAATGGCAGCATC+AGG | + | tig0030728:38976-38995 | None:intergenic | 50.0% | |
| ATTGTGGAACCCAGGAAGCA+GGG | + | tig0030728:39127-39146 | None:intergenic | 50.0% | |
| ! | TTTTATGGCTTCCAGGGCAC+AGG | - | tig0030728:39355-39374 | Msa1444430:intron | 50.0% |
| TTTATGGCTTCCAGGGCACA+GGG | - | tig0030728:39356-39375 | Msa1444430:intron | 50.0% | |
| CAAATTACTTCCCTGTGCCC+TGG | + | tig0030728:39369-39388 | None:intergenic | 50.0% | |
| TCATAAACAGACACCAGGGG+TGG | + | tig0030728:39416-39435 | None:intergenic | 50.0% | |
| AATTGTCGGGAGTTTGTCGG+CGG | - | tig0030728:39485-39504 | Msa1444430:exon | 50.0% | |
| ! | AGCTATGGTGCCTTCTAGAG+TGG | - | tig0030728:39597-39616 | Msa1444430:five_prime_UTR | 50.0% |
| !! | GCTATGGTGCCTTCTAGAGT+GGG | - | tig0030728:39598-39617 | Msa1444430:five_prime_UTR | 50.0% |
| AGTAAACGGCACCGTTTCGG+GGG | + | tig0030728:35544-35563 | None:intergenic | 55.0% | |
| GAAGAGGAAGAAGGTGGGAG+AGG | + | tig0030728:35573-35592 | None:intergenic | 55.0% | |
| GATGCAGCCTCATTCCTCGT+GGG | - | tig0030728:36020-36039 | Msa1444430:CDS | 55.0% | |
| ! | TGGTGTCAGTGTCAGACACG+TGG | + | tig0030728:36050-36069 | None:intergenic | 55.0% |
| TGTGGCGCAAATCGCATCCA+CGG | - | tig0030728:36224-36243 | Msa1444430:intron | 55.0% | |
| ATTGAGGAACCTGCGAACCG+TGG | - | tig0030728:36490-36509 | Msa1444430:intron | 55.0% | |
| !! | GCACAGCTCGTGTTGGTCTT+GGG | - | tig0030728:37751-37770 | Msa1444430:intron | 55.0% |
| !! | CACAGCTCGTGTTGGTCTTG+GGG | - | tig0030728:37752-37771 | Msa1444430:intron | 55.0% |
| !! | ACAGCTCGTGTTGGTCTTGG+GGG | - | tig0030728:37753-37772 | Msa1444430:intron | 55.0% |
| GCAGCAGCAGCTTCAGAAGT+TGG | + | tig0030728:38079-38098 | None:intergenic | 55.0% | |
| !! | ACTTCTGAAGCTGCTGCTGC+CGG | - | tig0030728:38079-38098 | Msa1444430:intron | 55.0% |
| TGCTGCTGCCGGTGAAAATC+AGG | - | tig0030728:38090-38109 | Msa1444430:intron | 55.0% | |
| GCTGCTGCCGGTGAAAATCA+GGG | - | tig0030728:38091-38110 | Msa1444430:intron | 55.0% | |
| CTGCTGCCGGTGAAAATCAG+GGG | - | tig0030728:38092-38111 | Msa1444430:intron | 55.0% | |
| GCCTCTGCCTTGATCCATCT+TGG | + | tig0030728:38246-38265 | None:intergenic | 55.0% | |
| !! | TCGGTGTCAGAGCTCCAGTT+TGG | + | tig0030728:38559-38578 | None:intergenic | 55.0% |
| ! | ACATTTTCAGCCCTGGCTGC+AGG | + | tig0030728:38641-38660 | None:intergenic | 55.0% |
| AAATGTACCTCCTGCAGGGC+AGG | - | tig0030728:38655-38674 | Msa1444430:intron | 55.0% | |
| ! | CATACCTGCTGGAGGAGCAT+TGG | + | tig0030728:38687-38706 | None:intergenic | 55.0% |
| AATGTCCCAGAAGCTGGCAG+AGG | - | tig0030728:39033-39052 | Msa1444430:intron | 55.0% | |
| CATTGCCTCTGCCAGCTTCT+GGG | + | tig0030728:39041-39060 | None:intergenic | 55.0% | |
| CAATGGTGGCAACCAGTGGT+GGG | - | tig0030728:39056-39075 | Msa1444430:intron | 55.0% | |
| AATGGTGGCAACCAGTGGTG+GGG | - | tig0030728:39057-39076 | Msa1444430:intron | 55.0% | |
| CCTTTACAATGCCCCACCAC+TGG | + | tig0030728:39071-39090 | None:intergenic | 55.0% | |
| !! | CCAGTGGTGGGGCATTGTAA+AGG | - | tig0030728:39068-39087 | Msa1444430:intron | 55.0% |
| GATTGTGGAACCCAGGAAGC+AGG | + | tig0030728:39128-39147 | None:intergenic | 55.0% | |
| GGCAGTTGTTAATCCACCCC+TGG | - | tig0030728:39400-39419 | Msa1444430:intron | 55.0% | |
| GGCAGAAAACGCCCCCGAAA+CGG | - | tig0030728:35530-35549 | Msa1444430:three_prime_UTR | 60.0% | |
| CGATGCAGCCTCATTCCTCG+TGG | - | tig0030728:36019-36038 | Msa1444430:CDS | 60.0% | |
| AGCCGGATAGGCCGGCAAAT+TGG | + | tig0030728:36407-36426 | None:intergenic | 60.0% | |
| AATTTGCCGGCCTATCCGGC+TGG | - | tig0030728:36406-36425 | Msa1444430:CDS | 60.0% | |
| GTAGCACGCACAGCTCGTGT+TGG | - | tig0030728:37744-37763 | Msa1444430:intron | 60.0% | |
| ! | CGCACAGCTCGTGTTGGTCT+TGG | - | tig0030728:37750-37769 | Msa1444430:intron | 60.0% |
| TCCACCAAGACCTGCAGCCA+GGG | - | tig0030728:38628-38647 | Msa1444430:intron | 60.0% | |
| GTTGCCAATGCTCCTCCAGC+AGG | - | tig0030728:38680-38699 | Msa1444430:intron | 60.0% | |
| GCTGCCATTGAGAACCAGCC+TGG | - | tig0030728:38979-38998 | Msa1444430:intron | 60.0% | |
| GGTCTGCACCATTACCAGGC+TGG | + | tig0030728:38996-39015 | None:intergenic | 60.0% | |
| GCACGGTCTGCACCATTACC+AGG | + | tig0030728:39000-39019 | None:intergenic | 60.0% | |
| CCATTGCCTCTGCCAGCTTC+TGG | + | tig0030728:39042-39061 | None:intergenic | 60.0% | |
| CCAGAAGCTGGCAGAGGCAA+TGG | - | tig0030728:39039-39058 | Msa1444430:intron | 60.0% | |
| GAAGCTGGCAGAGGCAATGG+TGG | - | tig0030728:39042-39061 | Msa1444430:intron | 60.0% | |
| GAGGCAATGGTGGCAACCAG+TGG | - | tig0030728:39052-39071 | Msa1444430:intron | 60.0% | |
| GCAATGGTGGCAACCAGTGG+TGG | - | tig0030728:39055-39074 | Msa1444430:intron | 60.0% | |
| GGGCGCGGTAACGATTGCAG+TGG | - | tig0030728:35954-35973 | Msa1444430:CDS | 65.0% | |
| TGGCACGCCCACGAGGAATG+AGG | + | tig0030728:36030-36049 | None:intergenic | 65.0% | |
| GAACCTGCGAACCGTGGAGC+TGG | - | tig0030728:36496-36515 | Msa1444430:intron | 65.0% | |
| AAGCCAGCTCCACGGTTCGC+AGG | + | tig0030728:36502-36521 | None:intergenic | 65.0% | |
| CACGAGCTGTGCGTGCTACC+AGG | + | tig0030728:37743-37762 | None:intergenic | 65.0% | |
| !! | CTCTGAGGTGCAGGCTGCTG+AGG | + | tig0030728:38136-38155 | None:intergenic | 65.0% |
| ! | GCAGGTCTTGGTGGACGAGG+AGG | + | tig0030728:38623-38642 | None:intergenic | 65.0% |
| ! | GCTGCAGGTCTTGGTGGACG+AGG | + | tig0030728:38626-38645 | None:intergenic | 65.0% |
| GTCCACCAAGACCTGCAGCC+AGG | - | tig0030728:38627-38646 | Msa1444430:intron | 65.0% | |
| TCAGCCCTGGCTGCAGGTCT+TGG | + | tig0030728:38635-38654 | None:intergenic | 65.0% | |
| TGTACCTCCTGCAGGGCAGG+TGG | - | tig0030728:38658-38677 | Msa1444430:intron | 65.0% | |
| TTGGCAACCACCTGCCCTGC+AGG | + | tig0030728:38668-38687 | None:intergenic | 65.0% | |
| AGACACGTGGCACGCCCACG+AGG | + | tig0030728:36037-36056 | None:intergenic | 70.0% | |
| GCCCTGGCTGCAGGTCTTGG+TGG | + | tig0030728:38632-38651 | None:intergenic | 70.0% | |
| GCAACCACCTGCCCTGCAGG+AGG | + | tig0030728:38665-38684 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0030728 | gene | 35382 | 39639 | 35382 | ID=Msa1444430;Name=Msa1444430 |
| tig0030728 | mRNA | 35382 | 39639 | 35382 | ID=Msa1444430-mRNA-1;Parent=Msa1444430;Name=Msa1444430-mRNA-1;_AED=0.06;_eAED=0.06;_QI=146|1|1|1|1|1|5|481|296 |
| tig0030728 | exon | 35382 | 36056 | 35382 | ID=Msa1444430-mRNA-1:exon:14474;Parent=Msa1444430-mRNA-1 |
| tig0030728 | exon | 36320 | 36468 | 36320 | ID=Msa1444430-mRNA-1:exon:14473;Parent=Msa1444430-mRNA-1 |
| tig0030728 | exon | 36719 | 36949 | 36719 | ID=Msa1444430-mRNA-1:exon:14472;Parent=Msa1444430-mRNA-1 |
| tig0030728 | exon | 38413 | 38636 | 38413 | ID=Msa1444430-mRNA-1:exon:14471;Parent=Msa1444430-mRNA-1 |
| tig0030728 | exon | 39401 | 39639 | 39401 | ID=Msa1444430-mRNA-1:exon:14470;Parent=Msa1444430-mRNA-1 |
| tig0030728 | five_prime_UTR | 39494 | 39639 | 39494 | ID=Msa1444430-mRNA-1:five_prime_utr;Parent=Msa1444430-mRNA-1 |
| tig0030728 | CDS | 39401 | 39493 | 39401 | ID=Msa1444430-mRNA-1:cds;Parent=Msa1444430-mRNA-1 |
| tig0030728 | CDS | 38413 | 38636 | 38413 | ID=Msa1444430-mRNA-1:cds;Parent=Msa1444430-mRNA-1 |
| tig0030728 | CDS | 36719 | 36949 | 36719 | ID=Msa1444430-mRNA-1:cds;Parent=Msa1444430-mRNA-1 |
| tig0030728 | CDS | 36320 | 36468 | 36320 | ID=Msa1444430-mRNA-1:cds;Parent=Msa1444430-mRNA-1 |
| tig0030728 | CDS | 35863 | 36056 | 35863 | ID=Msa1444430-mRNA-1:cds;Parent=Msa1444430-mRNA-1 |
| tig0030728 | three_prime_UTR | 35382 | 35862 | 35382 | ID=Msa1444430-mRNA-1:three_prime_utr;Parent=Msa1444430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
