AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1411380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1411380 MtrunA17_Chr1g0200981 98.611 360 5 0 1 360 1 360 0.0 743
Msa1411380 MtrunA17_Chr6g0465111 69.296 355 109 0 6 360 7 361 0.0 537
Msa1411380 MtrunA17_Chr6g0465121 65.915 355 116 1 6 360 20 369 1.19e-180 505
Msa1411380 MtrunA17_Chr6g0464971 61.582 354 136 0 6 359 9 362 1.04e-166 469
Msa1411380 MtrunA17_Chr6g0464961 62.994 354 131 0 6 359 31 384 2.14e-158 451
Msa1411380 MtrunA17_Chr6g0477771 52.355 361 167 2 2 358 3 362 9.00e-139 399
Msa1411380 MtrunA17_Chr3g0110001 49.300 357 177 2 6 358 7 363 9.87e-124 360
Msa1411380 MtrunA17_Chr6g0464931 67.647 102 33 0 6 107 9 110 1.96e-37 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1411380 AT4G09670.1 65.266 357 124 0 2 358 3 359 3.80e-179 501
Msa1411380 AT1G34200.1 57.955 352 136 3 6 356 7 347 9.38e-144 411
Msa1411380 AT1G66130.1 39.227 362 207 6 6 358 7 364 1.95e-84 260

Find 100 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGCTCAATTGGCATCTT+TGG 0.150387 tig0023765:-7639 Msa1411380:three_prime_UTR
GGATAATGGGGTTCAGTTTA+TGG 0.156726 tig0023765:-9386 Msa1411380:CDS
GAAGCAAATGCTTCTTATTC+TGG 0.175761 tig0023765:+9467 None:intergenic
TCGCTGCATTATCAAATTAA+AGG 0.182090 tig0023765:+9925 None:intergenic
GATCAGTGCTTCTGACATTT+TGG 0.185299 tig0023765:+9744 None:intergenic
TAACAAAGATGGAGTTATAT+TGG 0.254546 tig0023765:-8126 Msa1411380:CDS
TAATCCTAGGACTGCTAAAA+TGG 0.281705 tig0023765:-9344 Msa1411380:CDS
TGGGAGCTTGTGAGGATAAT+GGG 0.292083 tig0023765:-9399 Msa1411380:CDS
CGGCGCAGATGGTGGCGTTT+GGG 0.299088 tig0023765:+9659 None:intergenic
ACGGCGCAGATGGTGGCGTT+TGG 0.303690 tig0023765:+9658 None:intergenic
CTGTTAAGTCTTCAATTCAT+AGG 0.306990 tig0023765:-7740 Msa1411380:CDS
TTTATATTATATTGAGAGAT+TGG 0.310543 tig0023765:-9838 Msa1411380:five_prime_UTR
GGCGTTTGGGGATAGGTTGA+TGG 0.319210 tig0023765:+9672 None:intergenic
GTGGGAGCTTGTGAGGATAA+TGG 0.326462 tig0023765:-9400 Msa1411380:CDS
CAAAATGTGATCTGCTCAAT+TGG 0.327124 tig0023765:-7648 Msa1411380:three_prime_UTR
GGTTACAGAATTTGCTCGTT+TGG 0.359965 tig0023765:-7844 Msa1411380:CDS
TTGATGATCTTGTTACTTGT+TGG 0.364651 tig0023765:-7923 Msa1411380:CDS
ACAATGGATATAACAGCTAT+TGG 0.368508 tig0023765:-8032 Msa1411380:CDS
GATGCTTCATTCTCTTCATA+AGG 0.382468 tig0023765:+7972 None:intergenic
ATGCATTTGTGAGCTGTTCA+TGG 0.388784 tig0023765:-7570 Msa1411380:three_prime_UTR
CCTCTGACAGCGAAGGTATA+CGG 0.391217 tig0023765:-9583 Msa1411380:CDS
CACTTAAGGTGCAAGCTTGT+TGG 0.397452 tig0023765:+9505 None:intergenic
CGGCAACTACGAAGCTCTAC+TGG 0.398318 tig0023765:-9563 Msa1411380:CDS
CACAGCCTACTACTCCGATT+TGG 0.398824 tig0023765:+9722 None:intergenic
TTCAATGATCCGCACCGCTT+TGG 0.402052 tig0023765:-9313 Msa1411380:CDS
CCGCAAGAACGGCCCACTTA+AGG 0.402847 tig0023765:+9491 None:intergenic
GGCTTTGTCGTAGTTGCGGC+TGG 0.408541 tig0023765:+9633 None:intergenic
ATTGTGGTGCATCACTATAT+TGG 0.411258 tig0023765:-8103 Msa1411380:CDS
GTCGTAGTTGCGGCTGGCGA+CGG 0.414698 tig0023765:+9639 None:intergenic
GCCGCTTTCGCCACCGCCAA+TGG 0.415224 tig0023765:-9610 Msa1411380:CDS
TCTTCCTCAAGAGGCTCTCT+TGG 0.424130 tig0023765:-7865 Msa1411380:CDS
AAGCAAATGCTTCTTATTCT+GGG 0.425925 tig0023765:+9468 None:intergenic
GAACCATGTGCGTCAAGATC+TGG 0.426777 tig0023765:+8245 None:intergenic
AGATGGTGGCGTTTGGGGAT+AGG 0.426809 tig0023765:+9665 None:intergenic
CTTCACTCCTCAATCTGAAC+AGG 0.431496 tig0023765:+7708 None:intergenic
ACAATTGGCCACTTCTTCTC+AGG 0.432874 tig0023765:+7792 None:intergenic
ATAACAGCTATTGGAACAAA+AGG 0.438590 tig0023765:-8023 Msa1411380:CDS
CAACAAGCTTGCACCTTAAG+TGG 0.446324 tig0023765:-9504 Msa1411380:CDS
TCAGCAATATCCAGCGCAAC+GGG 0.447221 tig0023765:+9436 None:intergenic
TGTTAAGTCTTCAATTCATA+GGG 0.452020 tig0023765:-7739 Msa1411380:CDS
TTGTGGTGCATCACTATATT+GGG 0.454615 tig0023765:-8102 Msa1411380:CDS
ATATACACAGCGTCCACATC+AGG 0.464643 tig0023765:+9535 None:intergenic
TCTTGAGAAGCCCGTTGCGC+TGG 0.465138 tig0023765:-9446 Msa1411380:CDS
AGGTGCAAGCTTGTTGGTAG+TGG 0.470113 tig0023765:+9511 None:intergenic
CTGATCCAAATCGGAGTAGT+AGG 0.471545 tig0023765:-9727 Msa1411380:CDS
AGAAGTGGCCAATTGTTAGT+AGG 0.484377 tig0023765:-7785 Msa1411380:CDS
ACTCCATCTTTGTTAAGCAC+TGG 0.485256 tig0023765:+8134 None:intergenic
GCGGCTGGCGACGGCGCAGA+TGG 0.488870 tig0023765:+9648 None:intergenic
TGCTGAGTTTGATGAAATTG+TGG 0.489673 tig0023765:-9419 Msa1411380:CDS
CCGCTTTGGTCAACTCAAAT+CGG 0.490151 tig0023765:-9299 Msa1411380:intron
GCCATTGGCGGTGGCGAAAG+CGG 0.494977 tig0023765:+9609 None:intergenic
ATCTGCAGCAAATGTAAAGC+AGG 0.496037 tig0023765:+8301 None:intergenic
CTATGTGGGTTCATAATCCT+AGG 0.500670 tig0023765:-9357 Msa1411380:CDS
TACAGAATTTGCTCGTTTGG+TGG 0.508036 tig0023765:-7841 Msa1411380:CDS
GCTGGCGACGGCGCAGATGG+TGG 0.508895 tig0023765:+9651 None:intergenic
TCAGAAGCACTGATCCAAAT+CGG 0.512386 tig0023765:-9736 Msa1411380:CDS
CTTGACGCACATGGTTCTCT+AGG 0.513476 tig0023765:-8239 Msa1411380:CDS
CGCTGTCAGAGGGTAGCCAT+TGG 0.518909 tig0023765:+9594 None:intergenic
TGTCAGAGGGTAGCCATTGG+CGG 0.521007 tig0023765:+9597 None:intergenic
GCTGAGTTTGATGAAATTGT+GGG 0.524578 tig0023765:-9418 Msa1411380:CDS
TATAATATAAAATCATTACT+TGG 0.524816 tig0023765:+9850 None:intergenic
CCTTAAGTGGGCCGTTCTTG+CGG 0.525534 tig0023765:-9491 Msa1411380:CDS
ACAGAATTTGCTCGTTTGGT+GGG 0.526034 tig0023765:-7840 Msa1411380:CDS
CATGGTTCTCTAGGTGATGC+AGG 0.528921 tig0023765:-8230 Msa1411380:CDS
TTTCTTAGCAAACTTGACAA+TGG 0.530527 tig0023765:-8048 Msa1411380:CDS
GGCGCAGATGGTGGCGTTTG+GGG 0.530549 tig0023765:+9660 None:intergenic
CAGAGGGTAGCCATTGGCGG+TGG 0.533110 tig0023765:+9600 None:intergenic
GTTTATGGATAATACTATGT+GGG 0.534341 tig0023765:-9371 Msa1411380:CDS
CCGTATACCTTCGCTGTCAG+AGG 0.534458 tig0023765:+9583 None:intergenic
CTTATTCTGGGCCGCAAGAA+CGG 0.540934 tig0023765:+9480 None:intergenic
GTTCGTAGTTGGCAGCTAAG+AGG 0.542085 tig0023765:+8186 None:intergenic
AGAAACTTTACGAGCTATGT+CGG 0.550870 tig0023765:+9699 None:intergenic
CGGCGGCTTTGTCGTAGTTG+CGG 0.552909 tig0023765:+9629 None:intergenic
GTTCTCTAGGTGATGCAGGT+TGG 0.556860 tig0023765:-8226 Msa1411380:CDS
AGTTTATGGATAATACTATG+TGG 0.557985 tig0023765:-9372 Msa1411380:CDS
ACTCTAAGCCTGAGAAGAAG+TGG 0.559686 tig0023765:-7800 Msa1411380:CDS
ATTGGCGGTGGCGAAAGCGG+CGG 0.561135 tig0023765:+9612 None:intergenic
CTCAGCAATATCCAGCGCAA+CGG 0.568452 tig0023765:+9435 None:intergenic
GCATCACTATATTGGGAGGA+TGG 0.568538 tig0023765:-8095 Msa1411380:CDS
TAAAACTGATCTTCCTCAAG+AGG 0.573676 tig0023765:-7874 Msa1411380:CDS
GAACCAGTGCTTAACAAAGA+TGG 0.577418 tig0023765:-8137 Msa1411380:CDS
TGAAATTGTGGGAGCTTGTG+AGG 0.599951 tig0023765:-9407 Msa1411380:CDS
CGTATACCTTCGCTGTCAGA+GGG 0.599957 tig0023765:+9584 None:intergenic
GGGAGCTTGTGAGGATAATG+GGG 0.604851 tig0023765:-9398 Msa1411380:CDS
GAGTGTGGTATCTATGTACT+TGG 0.608899 tig0023765:+9808 None:intergenic
AAGCCAGATCTTGACGCACA+TGG 0.611601 tig0023765:-8248 Msa1411380:CDS
GTTAAGCACTGGTTCACGTG+AGG 0.613013 tig0023765:+8145 None:intergenic
AACAAGCTTGCACCTTAAGT+GGG 0.617418 tig0023765:-9503 Msa1411380:CDS
GATGGAGTTATATTGGATTG+TGG 0.629420 tig0023765:-8119 Msa1411380:CDS
GTTAAGTCTTCAATTCATAG+GGG 0.633153 tig0023765:-7738 Msa1411380:CDS
TTGAGTTGACCAAAGCGGTG+CGG 0.636462 tig0023765:+9304 None:intergenic
GTAACCAAGAGAGCCTCTTG+AGG 0.645260 tig0023765:+7861 None:intergenic
TCAGATTGAGGAGTGAAGCA+AGG 0.645911 tig0023765:-7703 Msa1411380:exon
TGGCTACCCTCTGACAGCGA+AGG 0.653414 tig0023765:-9590 Msa1411380:CDS
TAGACTGAGCTGAGTGAGTG+TGG 0.654005 tig0023765:+9793 None:intergenic
CCGATTTGAGTTGACCAAAG+CGG 0.657625 tig0023765:+9299 None:intergenic
TATACACAGCGTCCACATCA+GGG 0.659580 tig0023765:+9536 None:intergenic
TTTGAGAAGATACAGGCATG+TGG 0.695799 tig0023765:+7667 None:intergenic
TCTACTGGAAGACCCTGATG+TGG 0.699995 tig0023765:-9548 Msa1411380:CDS
TGGTGCATCACTATATTGGG+AGG 0.737696 tig0023765:-8099 Msa1411380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATATAAAATCATTACT+TGG + tig0023765:7773-7792 None:intergenic 10.0%
!! TTTATATTATATTGAGAGAT+TGG - tig0023765:7782-7801 Msa1411380:CDS 15.0%
!! TACTTATTACTATACAAAAA+TGG + tig0023765:8552-8571 None:intergenic 15.0%
!! GAAAAAAATAGTGAAAACAA+AGG - tig0023765:8760-8779 Msa1411380:intron 20.0%
!!! TAAAATGACATTAAGTTGTT+CGG - tig0023765:9000-9019 Msa1411380:intron 20.0%
!!! ATTTTGAAATATTGATAGTG+TGG - tig0023765:9153-9172 Msa1411380:intron 20.0%
!!! TTTTGAAATATTGATAGTGT+GGG - tig0023765:9154-9173 Msa1411380:intron 20.0%
!! ACTTGTTTACTTGTAAAATT+TGG - tig0023765:9202-9221 Msa1411380:intron 20.0%
!! CTTGCAATACAAATTTTTAC+TGG + tig0023765:7729-7748 None:intergenic 25.0%
! AGTTTATGGATAATACTATG+TGG - tig0023765:8248-8267 Msa1411380:CDS 25.0%
! GTTTATGGATAATACTATGT+GGG - tig0023765:8249-8268 Msa1411380:CDS 25.0%
! CACAGCTTAACAAATTTATT+TGG + tig0023765:8395-8414 None:intergenic 25.0%
! TAATTTCAAGACTAGTGTAT+GGG + tig0023765:8443-8462 None:intergenic 25.0%
! ACTAGAATACTAGATTGATA+TGG + tig0023765:8906-8925 None:intergenic 25.0%
!! TTGTTACTTCAAAGATCATT+TGG + tig0023765:8948-8967 None:intergenic 25.0%
! TAACAAAGATGGAGTTATAT+TGG - tig0023765:9494-9513 Msa1411380:CDS 25.0%
!!! GTTTTAACAGTACACTTAAT+TGG + tig0023765:9732-9751 None:intergenic 25.0%
! TGTTAAGTCTTCAATTCATA+GGG - tig0023765:9881-9900 Msa1411380:five_prime_UTR 25.0%
TCGCTGCATTATCAAATTAA+AGG + tig0023765:7698-7717 None:intergenic 30.0%
! GCAATACAAATTTTTACTGG+AGG + tig0023765:7726-7745 None:intergenic 30.0%
AAGCAAATGCTTCTTATTCT+GGG + tig0023765:8155-8174 None:intergenic 30.0%
GTAATTTCAAGACTAGTGTA+TGG + tig0023765:8444-8463 None:intergenic 30.0%
AGAGAGAAAAGAGAAAATAG+AGG - tig0023765:8720-8739 Msa1411380:intron 30.0%
GAGAGAAAAGAGAAAATAGA+GGG - tig0023765:8721-8740 Msa1411380:intron 30.0%
ATGGTAGTAAGTACTCAAAT+TGG - tig0023765:8863-8882 Msa1411380:intron 30.0%
! TAAGTACTCAAATTGGTTCT+TGG - tig0023765:8870-8889 Msa1411380:intron 30.0%
! AAATTGGTTCTTGGATTTGT+AGG - tig0023765:8879-8898 Msa1411380:intron 30.0%
! ATTTTCACCACTAGACTTTT+TGG - tig0023765:9091-9110 Msa1411380:intron 30.0%
TGCCTATTTACTGATATAAG+TGG - tig0023765:9270-9289 Msa1411380:intron 30.0%
CACCACTTATATCAGTAAAT+AGG + tig0023765:9275-9294 None:intergenic 30.0%
CTATTTACTGATATAAGTGG+TGG - tig0023765:9273-9292 Msa1411380:intron 30.0%
TTTCTTAGCAAACTTGACAA+TGG - tig0023765:9572-9591 Msa1411380:CDS 30.0%
ACAATGGATATAACAGCTAT+TGG - tig0023765:9588-9607 Msa1411380:CDS 30.0%
ATAACAGCTATTGGAACAAA+AGG - tig0023765:9597-9616 Msa1411380:CDS 30.0%
!! AATGAAGCATCTTTTCATGT+TGG - tig0023765:9660-9679 Msa1411380:CDS 30.0%
! TTGATGATCTTGTTACTTGT+TGG - tig0023765:9697-9716 Msa1411380:CDS 30.0%
! TGTGTTTTCCTACTAACAAT+TGG + tig0023765:9846-9865 None:intergenic 30.0%
CTGTTAAGTCTTCAATTCAT+AGG - tig0023765:9880-9899 Msa1411380:five_prime_UTR 30.0%
GTTAAGTCTTCAATTCATAG+GGG - tig0023765:9882-9901 Msa1411380:five_prime_UTR 30.0%
!! ATCACATTTTGAGAAGATAC+AGG + tig0023765:9963-9982 None:intergenic 30.0%
AGAAACTTTACGAGCTATGT+CGG + tig0023765:7924-7943 None:intergenic 35.0%
GAAGCAAATGCTTCTTATTC+TGG + tig0023765:8156-8175 None:intergenic 35.0%
TGCTGAGTTTGATGAAATTG+TGG - tig0023765:8201-8220 Msa1411380:CDS 35.0%
GCTGAGTTTGATGAAATTGT+GGG - tig0023765:8202-8221 Msa1411380:CDS 35.0%
TAATCCTAGGACTGCTAAAA+TGG - tig0023765:8276-8295 Msa1411380:CDS 35.0%
CCAAAAATAACAGTAGAGCT+AGG + tig0023765:8368-8387 None:intergenic 35.0%
!!! CCTAGCTCTACTGTTATTTT+TGG - tig0023765:8365-8384 Msa1411380:intron 35.0%
TAAGACTTTCAGACTTGAGA+AGG + tig0023765:8419-8438 None:intergenic 35.0%
TGTAGTCAAAGTCAAGATGT+AGG - tig0023765:8615-8634 Msa1411380:intron 35.0%
TCAAAGTCAAGATGTAGGAT+TGG - tig0023765:8620-8639 Msa1411380:intron 35.0%
TCATGTTTACGTTCCTTCAT+TGG + tig0023765:8650-8669 None:intergenic 35.0%
AATGAAGGAACGTAAACATG+AGG - tig0023765:8649-8668 Msa1411380:intron 35.0%
ACGTAACACAATTCGTAAGT+AGG - tig0023765:8673-8692 Msa1411380:intron 35.0%
ACACAATTCGTAAGTAGGAT+CGG - tig0023765:8678-8697 Msa1411380:intron 35.0%
TTGTAGTAAAGATCGAGTGT+TGG + tig0023765:8844-8863 None:intergenic 35.0%
ACACTCGATCTTTACTACAA+TGG - tig0023765:8844-8863 Msa1411380:intron 35.0%
AATCAAATTTGTCGCTCTGT+TGG - tig0023765:8974-8993 Msa1411380:intron 35.0%
ATCAAATTTGTCGCTCTGTT+GGG - tig0023765:8975-8994 Msa1411380:intron 35.0%
GACTGCAAAGTTTGATATGT+TGG - tig0023765:9046-9065 Msa1411380:intron 35.0%
ACTTTGTCCAAAAAGTCTAG+TGG + tig0023765:9101-9120 None:intergenic 35.0%
!! ATTGATAGTGTGGGAGATTA+AGG - tig0023765:9163-9182 Msa1411380:intron 35.0%
GATGGAGTTATATTGGATTG+TGG - tig0023765:9501-9520 Msa1411380:CDS 35.0%
ATTGTGGTGCATCACTATAT+TGG - tig0023765:9517-9536 Msa1411380:CDS 35.0%
TTGTGGTGCATCACTATATT+GGG - tig0023765:9518-9537 Msa1411380:CDS 35.0%
GATGCTTCATTCTCTTCATA+AGG + tig0023765:9651-9670 None:intergenic 35.0%
TAAAACTGATCTTCCTCAAG+AGG - tig0023765:9746-9765 Msa1411380:exon 35.0%
CAAAATGTGATCTGCTCAAT+TGG - tig0023765:9972-9991 Msa1411380:five_prime_UTR 35.0%
GAGTGTGGTATCTATGTACT+TGG + tig0023765:7815-7834 None:intergenic 40.0%
! GATCAGTGCTTCTGACATTT+TGG + tig0023765:7879-7898 None:intergenic 40.0%
!! TCAGAAGCACTGATCCAAAT+CGG - tig0023765:7884-7903 Msa1411380:CDS 40.0%
AACAAGCTTGCACCTTAAGT+GGG - tig0023765:8117-8136 Msa1411380:CDS 40.0%
!! GGATAATGGGGTTCAGTTTA+TGG - tig0023765:8234-8253 Msa1411380:CDS 40.0%
CTATGTGGGTTCATAATCCT+AGG - tig0023765:8263-8282 Msa1411380:CDS 40.0%
! AGTCAAGATGTAGGATTGGT+CGG - tig0023765:8624-8643 Msa1411380:intron 40.0%
AATTCGTAAGTAGGATCGGT+AGG - tig0023765:8682-8701 Msa1411380:intron 40.0%
CAGAGCGACAAATTTGATTG+AGG + tig0023765:8973-8992 None:intergenic 40.0%
CTGATATAAGTGGTGGCTTT+CGG - tig0023765:9280-9299 Msa1411380:intron 40.0%
TGATATAAGTGGTGGCTTTC+GGG - tig0023765:9281-9300 Msa1411380:intron 40.0%
ATCTGCAGCAAATGTAAAGC+AGG + tig0023765:9322-9341 None:intergenic 40.0%
!!! TGTTTTAGGGAGTTCGTAGT+TGG + tig0023765:9448-9467 None:intergenic 40.0%
! GTGAGGCTATCACTGTTTTA+GGG + tig0023765:9461-9480 None:intergenic 40.0%
GAACCAGTGCTTAACAAAGA+TGG - tig0023765:9483-9502 Msa1411380:CDS 40.0%
ACTCCATCTTTGTTAAGCAC+TGG + tig0023765:9489-9508 None:intergenic 40.0%
! GGTTACAGAATTTGCTCGTT+TGG - tig0023765:9776-9795 Msa1411380:five_prime_UTR 40.0%
! TACAGAATTTGCTCGTTTGG+TGG - tig0023765:9779-9798 Msa1411380:five_prime_UTR 40.0%
! ACAGAATTTGCTCGTTTGGT+GGG - tig0023765:9780-9799 Msa1411380:five_prime_UTR 40.0%
AGAAGTGGCCAATTGTTAGT+AGG - tig0023765:9835-9854 Msa1411380:five_prime_UTR 40.0%
! TTTTGAGCCTGTTCAGATTG+AGG - tig0023765:9905-9924 Msa1411380:five_prime_UTR 40.0%
TTTGAGAAGATACAGGCATG+TGG + tig0023765:9956-9975 None:intergenic 40.0%
ATCTGCTCAATTGGCATCTT+TGG - tig0023765:9981-10000 Msa1411380:five_prime_UTR 40.0%
ATGCATTTGTGAGCTGTTCA+TGG - tig0023765:10050-10069 Msa1411380:five_prime_UTR 40.0%
AAGATAGAAGTCCCCCTACA+AGG + tig0023765:7528-7547 None:intergenic 45.0%
CTGATCCAAATCGGAGTAGT+AGG - tig0023765:7893-7912 Msa1411380:CDS 45.0%
TATACACAGCGTCCACATCA+GGG + tig0023765:8087-8106 None:intergenic 45.0%
ATATACACAGCGTCCACATC+AGG + tig0023765:8088-8107 None:intergenic 45.0%
CACTTAAGGTGCAAGCTTGT+TGG + tig0023765:8118-8137 None:intergenic 45.0%
CAACAAGCTTGCACCTTAAG+TGG - tig0023765:8116-8135 Msa1411380:CDS 45.0%
TGAAATTGTGGGAGCTTGTG+AGG - tig0023765:8213-8232 Msa1411380:CDS 45.0%
TGGGAGCTTGTGAGGATAAT+GGG - tig0023765:8221-8240 Msa1411380:CDS 45.0%
!!! TGTGCCATTTTAGCAGTCCT+AGG + tig0023765:8283-8302 None:intergenic 45.0%
!! CCGATTTGAGTTGACCAAAG+CGG + tig0023765:8324-8343 None:intergenic 45.0%
CCGCTTTGGTCAACTCAAAT+CGG - tig0023765:8321-8340 Msa1411380:intron 45.0%
TAGGCAATGAACATGCAGTC+AGG + tig0023765:9256-9275 None:intergenic 45.0%
! CGTGAGGCTATCACTGTTTT+AGG + tig0023765:9462-9481 None:intergenic 45.0%
TGGTGCATCACTATATTGGG+AGG - tig0023765:9521-9540 Msa1411380:CDS 45.0%
GCATCACTATATTGGGAGGA+TGG - tig0023765:9525-9544 Msa1411380:CDS 45.0%
ACTCTAAGCCTGAGAAGAAG+TGG - tig0023765:9820-9839 Msa1411380:five_prime_UTR 45.0%
ACAATTGGCCACTTCTTCTC+AGG + tig0023765:9831-9850 None:intergenic 45.0%
CTTCACTCCTCAATCTGAAC+AGG + tig0023765:9915-9934 None:intergenic 45.0%
TCAGATTGAGGAGTGAAGCA+AGG - tig0023765:9917-9936 Msa1411380:five_prime_UTR 45.0%
TAGACTGAGCTGAGTGAGTG+TGG + tig0023765:7830-7849 None:intergenic 50.0%
CACAGCCTACTACTCCGATT+TGG + tig0023765:7901-7920 None:intergenic 50.0%
CGTATACCTTCGCTGTCAGA+GGG + tig0023765:8039-8058 None:intergenic 50.0%
! CCTCTGACAGCGAAGGTATA+CGG - tig0023765:8037-8056 Msa1411380:CDS 50.0%
TCTACTGGAAGACCCTGATG+TGG - tig0023765:8072-8091 Msa1411380:CDS 50.0%
!! AGGTGCAAGCTTGTTGGTAG+TGG + tig0023765:8112-8131 None:intergenic 50.0%
CTTATTCTGGGCCGCAAGAA+CGG + tig0023765:8143-8162 None:intergenic 50.0%
TCAGCAATATCCAGCGCAAC+GGG + tig0023765:8187-8206 None:intergenic 50.0%
CTCAGCAATATCCAGCGCAA+CGG + tig0023765:8188-8207 None:intergenic 50.0%
GTGGGAGCTTGTGAGGATAA+TGG - tig0023765:8220-8239 Msa1411380:CDS 50.0%
GGGAGCTTGTGAGGATAATG+GGG - tig0023765:8222-8241 Msa1411380:CDS 50.0%
TTCAATGATCCGCACCGCTT+TGG - tig0023765:8307-8326 Msa1411380:CDS 50.0%
!! TTGAGTTGACCAAAGCGGTG+CGG + tig0023765:8319-8338 None:intergenic 50.0%
!! TAGGATTGGTCGGCCAATGA+AGG - tig0023765:8634-8653 Msa1411380:intron 50.0%
GTAACATCGAAGCACGGTTG+AGG - tig0023765:8797-8816 Msa1411380:intron 50.0%
!! AAGCACGGTTGAGGTGTTGT+GGG - tig0023765:8806-8825 Msa1411380:intron 50.0%
AAGCCAGATCTTGACGCACA+TGG - tig0023765:9372-9391 Msa1411380:CDS 50.0%
GAACCATGTGCGTCAAGATC+TGG + tig0023765:9378-9397 None:intergenic 50.0%
CTTGACGCACATGGTTCTCT+AGG - tig0023765:9381-9400 Msa1411380:CDS 50.0%
CATGGTTCTCTAGGTGATGC+AGG - tig0023765:9390-9409 Msa1411380:CDS 50.0%
GTTCTCTAGGTGATGCAGGT+TGG - tig0023765:9394-9413 Msa1411380:CDS 50.0%
GTTCGTAGTTGGCAGCTAAG+AGG + tig0023765:9437-9456 None:intergenic 50.0%
!! GTTAAGCACTGGTTCACGTG+AGG + tig0023765:9478-9497 None:intergenic 50.0%
TCTTCCTCAAGAGGCTCTCT+TGG - tig0023765:9755-9774 Msa1411380:exon 50.0%
GTAACCAAGAGAGCCTCTTG+AGG + tig0023765:9762-9781 None:intergenic 50.0%
! GGCGTTTGGGGATAGGTTGA+TGG + tig0023765:7951-7970 None:intergenic 55.0%
! AGATGGTGGCGTTTGGGGAT+AGG + tig0023765:7958-7977 None:intergenic 55.0%
TGTCAGAGGGTAGCCATTGG+CGG + tig0023765:8026-8045 None:intergenic 55.0%
CCGTATACCTTCGCTGTCAG+AGG + tig0023765:8040-8059 None:intergenic 55.0%
CGGCAACTACGAAGCTCTAC+TGG - tig0023765:8057-8076 Msa1411380:CDS 55.0%
CCTTAAGTGGGCCGTTCTTG+CGG - tig0023765:8129-8148 Msa1411380:CDS 55.0%
CCGTGCTTCGATGTTACGCA+GGG + tig0023765:8794-8813 None:intergenic 55.0%
CCCTGCGTAACATCGAAGCA+CGG - tig0023765:8791-8810 Msa1411380:intron 55.0%
ACCGTGCTTCGATGTTACGC+AGG + tig0023765:8795-8814 None:intergenic 55.0%
!! GAAGCACGGTTGAGGTGTTG+TGG - tig0023765:8805-8824 Msa1411380:intron 55.0%
! GGCTTTGTCGTAGTTGCGGC+TGG + tig0023765:7990-8009 None:intergenic 60.0%
! CGGCGGCTTTGTCGTAGTTG+CGG + tig0023765:7994-8013 None:intergenic 60.0%
CGCTGTCAGAGGGTAGCCAT+TGG + tig0023765:8029-8048 None:intergenic 60.0%
TGGCTACCCTCTGACAGCGA+AGG - tig0023765:8030-8049 Msa1411380:CDS 60.0%
CCGCAAGAACGGCCCACTTA+AGG + tig0023765:8132-8151 None:intergenic 60.0%
TCTTGAGAAGCCCGTTGCGC+TGG - tig0023765:8174-8193 Msa1411380:CDS 60.0%
TGGTGGCTTTCGGGCTGTAC+AGG - tig0023765:9290-9309 Msa1411380:intron 60.0%
! GGCGCAGATGGTGGCGTTTG+GGG + tig0023765:7963-7982 None:intergenic 65.0%
! CGGCGCAGATGGTGGCGTTT+GGG + tig0023765:7964-7983 None:intergenic 65.0%
! ACGGCGCAGATGGTGGCGTT+TGG + tig0023765:7965-7984 None:intergenic 65.0%
GTCGTAGTTGCGGCTGGCGA+CGG + tig0023765:7984-8003 None:intergenic 65.0%
ATTGGCGGTGGCGAAAGCGG+CGG + tig0023765:8011-8030 None:intergenic 65.0%
GCCATTGGCGGTGGCGAAAG+CGG + tig0023765:8014-8033 None:intergenic 65.0%
CAGAGGGTAGCCATTGGCGG+TGG + tig0023765:8023-8042 None:intergenic 65.0%
! GCCGCTTTCGCCACCGCCAA+TGG - tig0023765:8010-8029 Msa1411380:CDS 70.0%
GCTGGCGACGGCGCAGATGG+TGG + tig0023765:7972-7991 None:intergenic 75.0%
! GCGGCTGGCGACGGCGCAGA+TGG + tig0023765:7975-7994 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0023765 gene 7516 10126 7516 ID=Msa1411380;Name=Msa1411380
tig0023765 mRNA 7516 10126 7516 ID=Msa1411380-mRNA-1;Parent=Msa1411380;Name=Msa1411380-mRNA-1;_AED=0.02;_eAED=0.02;_QI=365|1|1|1|1|1|2|194|360
tig0023765 exon 7516 8330 7516 ID=Msa1411380-mRNA-1:exon:20108;Parent=Msa1411380-mRNA-1
tig0023765 exon 9300 10126 9300 ID=Msa1411380-mRNA-1:exon:20107;Parent=Msa1411380-mRNA-1
tig0023765 five_prime_UTR 9762 10126 9762 ID=Msa1411380-mRNA-1:five_prime_utr;Parent=Msa1411380-mRNA-1
tig0023765 CDS 9300 9761 9300 ID=Msa1411380-mRNA-1:cds;Parent=Msa1411380-mRNA-1
tig0023765 CDS 7710 8330 7710 ID=Msa1411380-mRNA-1:cds;Parent=Msa1411380-mRNA-1
tig0023765 three_prime_UTR 7516 7709 7516 ID=Msa1411380-mRNA-1:three_prime_utr;Parent=Msa1411380-mRNA-1
Gene Sequence

>Msa1411380

ATGTCAGAAGCACTGATCCAAATCGGAGTAGTAGGCTGTGCCGACATAGCTCGTAAAGTTTCTCGCGCCATCAACCTATCCCCAAACGCCACCATCTGCGCCGTCGCCAGCCGCAACTACGACAAAGCCGCCGCTTTCGCCACCGCCAATGGCTACCCTCTGACAGCGAAGGTATACGGCAACTACGAAGCTCTACTGGAAGACCCTGATGTGGACGCTGTGTATATGCCACTACCAACAAGCTTGCACCTTAAGTGGGCCGTTCTTGCGGCCCAGAATAAGAAGCATTTGCTTCTTGAGAAGCCCGTTGCGCTGGATATTGCTGAGTTTGATGAAATTGTGGGAGCTTGTGAGGATAATGGGGTTCAGTTTATGGATAATACTATGTGGGTTCATAATCCTAGGACTGCTAAAATGGCACAGTTCTTCAATGATCCGCACCGCTTTGGTCAACTCAAATCGGTTCGCACCTGCTTTACATTTGCTGCAGATTCTGAATATCTAAAGAAAGACATTCGTGTGAAGCCAGATCTTGACGCACATGGTTCTCTAGGTGATGCAGGTTGGTATTGCATTCGTGCAATCCTCTTAGCTGCCAACTACGAACTCCCTAAAACAGTGATAGCCTCACGTGAACCAGTGCTTAACAAAGATGGAGTTATATTGGATTGTGGTGCATCACTATATTGGGAGGATGGTAAAGTAGCTACATTTCATTGCTCTTTCTTAGCAAACTTGACAATGGATATAACAGCTATTGGAACAAAAGGAACTCTTCATGTTCATGATTTTATTATTCCTTATGAAGAGAATGAAGCATCTTTTCATGTTGGTACTGAAACTAGCTTTGATGATCTTGTTACTTGTTGGTCTAAACAGCCAATTAAGTGTACTGTTAAAACTGATCTTCCTCAAGAGGCTCTCTTGGTTACAGAATTTGCTCGTTTGGTGGGTGAAATTAAATTTAGAAACTCTAAGCCTGAGAAGAAGTGGCCAATTGTTAGTAGGAAAACACAACTTGTGTTGAATGCTGTTAAGTCTTCAATTCATAGGGGTTTTGAGCCTGTTCAGATTGAGGAGTGA
Protein sequence

>Msa1411380

MSEALIQIGVVGCADIARKVSRAINLSPNATICAVASRNYDKAAAFATANGYPLTAKVYGNYEALLEDPDVDAVYMPLPTSLHLKWAVLAAQNKKHLLLEKPVALDIAEFDEIVGACEDNGVQFMDNTMWVHNPRTAKMAQFFNDPHRFGQLKSVRTCFTFAADSEYLKKDIRVKPDLDAHGSLGDAGWYCIRAILLAANYELPKTVIASREPVLNKDGVILDCGASLYWEDGKVATFHCSFLANLTMDITAIGTKGTLHVHDFIIPYEENEASFHVGTETSFDDLVTCWSKQPIKCTVKTDLPQEALLVTEFARLVGEIKFRNSKPEKKWPIVSRKTQLVLNAVKSSIHRGFEPVQIEE*