AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0037290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037290 MtrunA17_Chr1g0200981 98.611 360 5 0 1 360 1 360 0.0 743
Msa0037290 MtrunA17_Chr6g0465111 69.296 355 109 0 6 360 7 361 0.0 537
Msa0037290 MtrunA17_Chr6g0465121 65.915 355 116 1 6 360 20 369 1.19e-180 505
Msa0037290 MtrunA17_Chr6g0464971 61.582 354 136 0 6 359 9 362 1.04e-166 469
Msa0037290 MtrunA17_Chr6g0464961 62.994 354 131 0 6 359 31 384 2.14e-158 451
Msa0037290 MtrunA17_Chr6g0477771 52.355 361 167 2 2 358 3 362 9.00e-139 399
Msa0037290 MtrunA17_Chr3g0110001 49.300 357 177 2 6 358 7 363 9.87e-124 360
Msa0037290 MtrunA17_Chr6g0464931 67.647 102 33 0 6 107 9 110 1.96e-37 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037290 AT4G09670.1 65.266 357 124 0 2 358 3 359 3.80e-179 501
Msa0037290 AT1G34200.1 57.955 352 136 3 6 356 7 347 9.38e-144 411
Msa0037290 AT1G66130.1 39.227 362 207 6 6 358 7 364 1.95e-84 260

Find 100 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGCTCAATTGGCATCTT+TGG 0.150387 1_1:-66302767 Msa0037290:three_prime_UTR
GGATAATGGGGTTCAGTTTA+TGG 0.156726 1_1:-66304507 Msa0037290:CDS
GAAGCAAATGCTTCTTATTC+TGG 0.175761 1_1:+66304588 None:intergenic
TCGCTGCATTATCAAATTAA+AGG 0.182090 1_1:+66305052 None:intergenic
TAACAAAGATGGAGTTATAT+TGG 0.254546 1_1:-66303254 Msa0037290:CDS
GATCAGTGCTTCTGACATTT+TGG 0.256227 1_1:+66304865 None:intergenic
TAATCCTAGGACTGCTAAAA+TGG 0.281705 1_1:-66304465 Msa0037290:CDS
TGGGAGCTTGTGAGGATAAT+GGG 0.292083 1_1:-66304520 Msa0037290:CDS
CGGCGCAGATGGTGGCGTTT+GGG 0.299088 1_1:+66304780 None:intergenic
ACGGCGCAGATGGTGGCGTT+TGG 0.303690 1_1:+66304779 None:intergenic
CTGTTAAGTCTTCAATTCAT+AGG 0.306990 1_1:-66302868 Msa0037290:CDS
TTTATATTATATTGAGAGAT+TGG 0.310543 1_1:-66304955 Msa0037290:five_prime_UTR
GGCGTTTGGGGATAGGTTGA+TGG 0.319210 1_1:+66304793 None:intergenic
GTGGGAGCTTGTGAGGATAA+TGG 0.326462 1_1:-66304521 Msa0037290:CDS
CAAAATGTGATCTGCTCAAT+TGG 0.327124 1_1:-66302776 Msa0037290:three_prime_UTR
TTGATGATCTTGTTACTTGT+TGG 0.364651 1_1:-66303051 Msa0037290:CDS
ACAATGGATATAACAGCTAT+TGG 0.368508 1_1:-66303160 Msa0037290:CDS
GATGCTTCATTCTCTTCATA+AGG 0.382468 1_1:+66303100 None:intergenic
ATGCATTTGTGAGCTGTTCA+TGG 0.388784 1_1:-66302698 Msa0037290:three_prime_UTR
CCTCTGACAGCGAAGGTATA+CGG 0.391217 1_1:-66304704 Msa0037290:CDS
CACTTAAGGTGCAAGCTTGT+TGG 0.397452 1_1:+66304626 None:intergenic
CGGCAACTACGAAGCTCTAC+TGG 0.398318 1_1:-66304684 Msa0037290:CDS
CACAGCCTACTACTCCGATT+TGG 0.398824 1_1:+66304843 None:intergenic
TTCAATGATCCGCACCGCTT+TGG 0.402052 1_1:-66304434 Msa0037290:CDS
CCGCAAGAACGGCCCACTTA+AGG 0.402847 1_1:+66304612 None:intergenic
GGCTTTGTCGTAGTTGCGGC+TGG 0.408541 1_1:+66304754 None:intergenic
ATTGTGGTGCATCACTATAT+TGG 0.411258 1_1:-66303231 Msa0037290:CDS
GTCGTAGTTGCGGCTGGCGA+CGG 0.414698 1_1:+66304760 None:intergenic
GCCGCTTTCGCCACCGCCAA+TGG 0.415224 1_1:-66304731 Msa0037290:CDS
TCTTCCTCAAGAGGCTCTCT+TGG 0.424130 1_1:-66302993 Msa0037290:CDS
AAGCAAATGCTTCTTATTCT+GGG 0.425925 1_1:+66304589 None:intergenic
GAACCATGTGCGTCAAGATC+TGG 0.426777 1_1:+66303373 None:intergenic
AGATGGTGGCGTTTGGGGAT+AGG 0.426809 1_1:+66304786 None:intergenic
CTTCACTCCTCAATCTGAAC+AGG 0.431496 1_1:+66302836 None:intergenic
ACAATTGGCCACTTCTTCTC+AGG 0.432874 1_1:+66302920 None:intergenic
ATAACAGCTATTGGAACAAA+AGG 0.438590 1_1:-66303151 Msa0037290:CDS
CAACAAGCTTGCACCTTAAG+TGG 0.446324 1_1:-66304625 Msa0037290:CDS
TCAGCAATATCCAGCGCAAC+GGG 0.447221 1_1:+66304557 None:intergenic
TACAGAATTTGCTCGTTTAG+TGG 0.447600 1_1:-66302969 Msa0037290:CDS
TGTTAAGTCTTCAATTCATA+GGG 0.452020 1_1:-66302867 Msa0037290:CDS
TTGTGGTGCATCACTATATT+GGG 0.454615 1_1:-66303230 Msa0037290:CDS
ATATACACAGCGTCCACATC+AGG 0.464643 1_1:+66304656 None:intergenic
TCTTGAGAAGCCCGTTGCGC+TGG 0.465138 1_1:-66304567 Msa0037290:CDS
AGGTGCAAGCTTGTTGGTAG+TGG 0.470113 1_1:+66304632 None:intergenic
CTGATCCAAATCGGAGTAGT+AGG 0.471545 1_1:-66304848 Msa0037290:CDS
AGAAGTGGCCAATTGTTAGT+AGG 0.484377 1_1:-66302913 Msa0037290:CDS
ACTCCATCTTTGTTAAGCAC+TGG 0.485256 1_1:+66303262 None:intergenic
GCGGCTGGCGACGGCGCAGA+TGG 0.488870 1_1:+66304769 None:intergenic
TGCTGAGTTTGATGAAATTG+TGG 0.489673 1_1:-66304540 Msa0037290:CDS
CCGCTTTGGTCAACTCAAAT+CGG 0.490151 1_1:-66304420 Msa0037290:intron
GCCATTGGCGGTGGCGAAAG+CGG 0.494977 1_1:+66304730 None:intergenic
ATCTGCAGCAAATGTAAAGC+AGG 0.496037 1_1:+66303429 None:intergenic
CTATGTGGGTTCATAATCCT+AGG 0.500670 1_1:-66304478 Msa0037290:CDS
GCTGGCGACGGCGCAGATGG+TGG 0.508895 1_1:+66304772 None:intergenic
TCAGAAGCACTGATCCAAAT+CGG 0.512386 1_1:-66304857 Msa0037290:CDS
CTTGACGCACATGGTTCTCT+AGG 0.513476 1_1:-66303367 Msa0037290:CDS
ACAGAATTTGCTCGTTTAGT+GGG 0.514496 1_1:-66302968 Msa0037290:CDS
CGCTGTCAGAGGGTAGCCAT+TGG 0.518909 1_1:+66304715 None:intergenic
TGTCAGAGGGTAGCCATTGG+CGG 0.521007 1_1:+66304718 None:intergenic
GCTGAGTTTGATGAAATTGT+GGG 0.524578 1_1:-66304539 Msa0037290:CDS
TATAATATAAAATCATTACT+TGG 0.524816 1_1:+66304967 None:intergenic
CCTTAAGTGGGCCGTTCTTG+CGG 0.525534 1_1:-66304612 Msa0037290:CDS
CATGGTTCTCTAGGTGATGC+AGG 0.528921 1_1:-66303358 Msa0037290:CDS
TTTCTTAGCAAACTTGACAA+TGG 0.530527 1_1:-66303176 Msa0037290:CDS
GGCGCAGATGGTGGCGTTTG+GGG 0.530549 1_1:+66304781 None:intergenic
CAGAGGGTAGCCATTGGCGG+TGG 0.533110 1_1:+66304721 None:intergenic
GTTTATGGATAATACTATGT+GGG 0.534341 1_1:-66304492 Msa0037290:CDS
CCGTATACCTTCGCTGTCAG+AGG 0.534458 1_1:+66304704 None:intergenic
CTTATTCTGGGCCGCAAGAA+CGG 0.540934 1_1:+66304601 None:intergenic
GTTCGTAGTTGGCAGCTAAG+AGG 0.542085 1_1:+66303314 None:intergenic
AGAAACTTTACGAGCTATGT+CGG 0.550870 1_1:+66304820 None:intergenic
CGGCGGCTTTGTCGTAGTTG+CGG 0.552909 1_1:+66304750 None:intergenic
GTTCTCTAGGTGATGCAGGT+TGG 0.556860 1_1:-66303354 Msa0037290:CDS
AGTTTATGGATAATACTATG+TGG 0.557985 1_1:-66304493 Msa0037290:CDS
ACTCTAAGCCTGAGAAGAAG+TGG 0.559686 1_1:-66302928 Msa0037290:CDS
ATTGGCGGTGGCGAAAGCGG+CGG 0.561135 1_1:+66304733 None:intergenic
CTCAGCAATATCCAGCGCAA+CGG 0.568452 1_1:+66304556 None:intergenic
GCATCACTATATTGGGAGGA+TGG 0.568538 1_1:-66303223 Msa0037290:CDS
TAAAACTGATCTTCCTCAAG+AGG 0.573676 1_1:-66303002 Msa0037290:CDS
GAACCAGTGCTTAACAAAGA+TGG 0.577418 1_1:-66303265 Msa0037290:CDS
GATTGAGTGTGGTATGTACT+TGG 0.587621 1_1:+66304925 None:intergenic
TGAAATTGTGGGAGCTTGTG+AGG 0.599951 1_1:-66304528 Msa0037290:CDS
CGTATACCTTCGCTGTCAGA+GGG 0.599957 1_1:+66304705 None:intergenic
GGGAGCTTGTGAGGATAATG+GGG 0.604851 1_1:-66304519 Msa0037290:CDS
AAGCCAGATCTTGACGCACA+TGG 0.611601 1_1:-66303376 Msa0037290:CDS
GTTAAGCACTGGTTCACGTG+AGG 0.613013 1_1:+66303273 None:intergenic
AACAAGCTTGCACCTTAAGT+GGG 0.617418 1_1:-66304624 Msa0037290:CDS
GATGGAGTTATATTGGATTG+TGG 0.629420 1_1:-66303247 Msa0037290:CDS
GTTAAGTCTTCAATTCATAG+GGG 0.633153 1_1:-66302866 Msa0037290:CDS
TTGAGTTGACCAAAGCGGTG+CGG 0.636462 1_1:+66304425 None:intergenic
GTAACCAAGAGAGCCTCTTG+AGG 0.645260 1_1:+66302989 None:intergenic
TCAGATTGAGGAGTGAAGCA+AGG 0.645911 1_1:-66302831 Msa0037290:exon
TGGCTACCCTCTGACAGCGA+AGG 0.653414 1_1:-66304711 Msa0037290:CDS
GTTAGCAAGACTCATATACA+AGG 0.654499 1_1:+66305200 None:intergenic
CCGATTTGAGTTGACCAAAG+CGG 0.657625 1_1:+66304420 None:intergenic
TATACACAGCGTCCACATCA+GGG 0.659580 1_1:+66304657 None:intergenic
TAGACTGAGCTGATTGAGTG+TGG 0.688133 1_1:+66304914 None:intergenic
TTTGAGAAGATACAGGCATG+TGG 0.695799 1_1:+66302795 None:intergenic
TCTACTGGAAGACCCTGATG+TGG 0.699995 1_1:-66304669 Msa0037290:CDS
TGGTGCATCACTATATTGGG+AGG 0.737696 1_1:-66303227 Msa0037290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATATAAAATCATTACT+TGG + chr1_1:66302923-66302942 None:intergenic 10.0%
!! TTTATATTATATTGAGAGAT+TGG - chr1_1:66302932-66302951 Msa0037290:CDS 15.0%
!! TACTTATTACTATACAAAAA+TGG + chr1_1:66303698-66303717 None:intergenic 15.0%
!! AAAAAAAATAGTGAAAACAA+AGG - chr1_1:66303907-66303926 Msa0037290:intron 15.0%
!!! TAAAATGATATTAAGTTGTT+CGG - chr1_1:66304147-66304166 Msa0037290:intron 15.0%
!!! ATTTTGAAATATTGATAGTG+CGG - chr1_1:66304300-66304319 Msa0037290:intron 20.0%
! AGGACTCATATAAAGAAAAA+CGG + chr1_1:66302670-66302689 None:intergenic 25.0%
!! GCAATACAAATTTTTACTAG+AGG + chr1_1:66302884-66302903 None:intergenic 25.0%
! AGTTTATGGATAATACTATG+TGG - chr1_1:66303394-66303413 Msa0037290:CDS 25.0%
! GTTTATGGATAATACTATGT+GGG - chr1_1:66303395-66303414 Msa0037290:CDS 25.0%
! CACAGCTTAACAAATTTATT+TGG + chr1_1:66303541-66303560 None:intergenic 25.0%
! TAATTTCAAGACTAGTGTAT+GGG + chr1_1:66303589-66303608 None:intergenic 25.0%
!! TTGTTACTTCAAAGATCATT+TGG + chr1_1:66304095-66304114 None:intergenic 25.0%
!!! TTTTGAAATATTGATAGTGC+GGG - chr1_1:66304301-66304320 Msa0037290:intron 25.0%
! GAGTATTTACTTGTAGAATT+TGG - chr1_1:66304341-66304360 Msa0037290:intron 25.0%
! TGACTATTTACTGATATAAG+TGG - chr1_1:66304409-66304428 Msa0037290:intron 25.0%
! TAACAAAGATGGAGTTATAT+TGG - chr1_1:66304633-66304652 Msa0037290:CDS 25.0%
!!! GTTTTAACAGTACACTTAAT+TGG + chr1_1:66304871-66304890 None:intergenic 25.0%
! TGTTAAGTCTTCAATTCATA+GGG - chr1_1:66305020-66305039 Msa0037290:five_prime_UTR 25.0%
TCGCTGCATTATCAAATTAA+AGG + chr1_1:66302838-66302857 None:intergenic 30.0%
AAGCAAATGCTTCTTATTCT+GGG + chr1_1:66303301-66303320 None:intergenic 30.0%
GTAATTTCAAGACTAGTGTA+TGG + chr1_1:66303590-66303609 None:intergenic 30.0%
TCATGTTTACATTCCTTCAT+TGG + chr1_1:66303796-66303815 None:intergenic 30.0%
AATGAAGGAATGTAAACATG+AGG - chr1_1:66303795-66303814 Msa0037290:intron 30.0%
AGAGAGAAAAGAGAAAATAG+AGG - chr1_1:66303866-66303885 Msa0037290:intron 30.0%
GAGAGAAAAGAGAAAATAGA+GGG - chr1_1:66303867-66303886 Msa0037290:intron 30.0%
ATGGTAGTAAGTACTCAAAT+TGG - chr1_1:66304010-66304029 Msa0037290:intron 30.0%
! TAAGTACTCAAATTGGTTCT+TGG - chr1_1:66304017-66304036 Msa0037290:intron 30.0%
! AAATTGGTTCTTGGATTTGT+AGG - chr1_1:66304026-66304045 Msa0037290:intron 30.0%
! ATTTTCACCACTAGACTTTT+TGG - chr1_1:66304238-66304257 Msa0037290:intron 30.0%
CTATTTACTGATATAAGTGG+TGG - chr1_1:66304412-66304431 Msa0037290:intron 30.0%
TTTCTTAGCAAACTTGACAA+TGG - chr1_1:66304711-66304730 Msa0037290:CDS 30.0%
ACAATGGATATAACAGCTAT+TGG - chr1_1:66304727-66304746 Msa0037290:CDS 30.0%
ATAACAGCTATTGGAACAAA+AGG - chr1_1:66304736-66304755 Msa0037290:CDS 30.0%
!! AATGAAGCATCTTTTCATGT+TGG - chr1_1:66304799-66304818 Msa0037290:CDS 30.0%
! TTGATGATCTTGTTACTTGT+TGG - chr1_1:66304836-66304855 Msa0037290:CDS 30.0%
! TGTGTTTTCCTACTAACAAT+TGG + chr1_1:66304985-66305004 None:intergenic 30.0%
CTGTTAAGTCTTCAATTCAT+AGG - chr1_1:66305019-66305038 Msa0037290:five_prime_UTR 30.0%
GTTAAGTCTTCAATTCATAG+GGG - chr1_1:66305021-66305040 Msa0037290:five_prime_UTR 30.0%
!! ATCACATTTTGAGAAGATAC+AGG + chr1_1:66305102-66305121 None:intergenic 30.0%
GTTAGCAAGACTCATATACA+AGG + chr1_1:66302690-66302709 None:intergenic 35.0%
AGAAACTTTACGAGCTATGT+CGG + chr1_1:66303070-66303089 None:intergenic 35.0%
GAAGCAAATGCTTCTTATTC+TGG + chr1_1:66303302-66303321 None:intergenic 35.0%
TGCTGAGTTTGATGAAATTG+TGG - chr1_1:66303347-66303366 Msa0037290:CDS 35.0%
GCTGAGTTTGATGAAATTGT+GGG - chr1_1:66303348-66303367 Msa0037290:CDS 35.0%
TAATCCTAGGACTGCTAAAA+TGG - chr1_1:66303422-66303441 Msa0037290:CDS 35.0%
CCAAAAATAACAGTAGAGCT+AGG + chr1_1:66303514-66303533 None:intergenic 35.0%
!!! CCTAGCTCTACTGTTATTTT+TGG - chr1_1:66303511-66303530 Msa0037290:intron 35.0%
TGTAGTCAAAGTCAAGATGT+AGG - chr1_1:66303761-66303780 Msa0037290:intron 35.0%
TCAAAGTCAAGATGTAGGAT+TGG - chr1_1:66303766-66303785 Msa0037290:intron 35.0%
ACGTAACACAATTCGTAAGT+CGG - chr1_1:66303819-66303838 Msa0037290:intron 35.0%
TTGTAGTAAAGATCGAGTGT+TGG + chr1_1:66303991-66304010 None:intergenic 35.0%
ACACTCGATCTTTACTACAA+TGG - chr1_1:66303991-66304010 Msa0037290:intron 35.0%
AATCAAATTTGTCGCTCTGT+TGG - chr1_1:66304121-66304140 Msa0037290:intron 35.0%
ATCAAATTTGTCGCTCTGTT+GGG - chr1_1:66304122-66304141 Msa0037290:intron 35.0%
GACTGCAAAGTTTGATATGT+TGG - chr1_1:66304193-66304212 Msa0037290:intron 35.0%
ACTTTGTCCAAAAAGTCTAG+TGG + chr1_1:66304248-66304267 None:intergenic 35.0%
GATGGAGTTATATTGGATTG+TGG - chr1_1:66304640-66304659 Msa0037290:CDS 35.0%
ATTGTGGTGCATCACTATAT+TGG - chr1_1:66304656-66304675 Msa0037290:CDS 35.0%
TTGTGGTGCATCACTATATT+GGG - chr1_1:66304657-66304676 Msa0037290:CDS 35.0%
GATGCTTCATTCTCTTCATA+AGG + chr1_1:66304790-66304809 None:intergenic 35.0%
TAAAACTGATCTTCCTCAAG+AGG - chr1_1:66304885-66304904 Msa0037290:five_prime_UTR 35.0%
! TACAGAATTTGCTCGTTTAG+TGG - chr1_1:66304918-66304937 Msa0037290:five_prime_UTR 35.0%
! ACAGAATTTGCTCGTTTAGT+GGG - chr1_1:66304919-66304938 Msa0037290:five_prime_UTR 35.0%
CAAAATGTGATCTGCTCAAT+TGG - chr1_1:66305111-66305130 Msa0037290:five_prime_UTR 35.0%
GATTGAGTGTGGTATGTACT+TGG + chr1_1:66302965-66302984 None:intergenic 40.0%
! GATCAGTGCTTCTGACATTT+TGG + chr1_1:66303025-66303044 None:intergenic 40.0%
!! TCAGAAGCACTGATCCAAAT+CGG - chr1_1:66303030-66303049 Msa0037290:CDS 40.0%
AACAAGCTTGCACCTTAAGT+GGG - chr1_1:66303263-66303282 Msa0037290:CDS 40.0%
!! GGATAATGGGGTTCAGTTTA+TGG - chr1_1:66303380-66303399 Msa0037290:CDS 40.0%
CTATGTGGGTTCATAATCCT+AGG - chr1_1:66303409-66303428 Msa0037290:CDS 40.0%
! AGTCAAGATGTAGGATTGGT+CGG - chr1_1:66303770-66303789 Msa0037290:intron 40.0%
ACACAATTCGTAAGTCGGAT+CGG - chr1_1:66303824-66303843 Msa0037290:intron 40.0%
CAGAGCGACAAATTTGATTG+AGG + chr1_1:66304120-66304139 None:intergenic 40.0%
!! ATTGATAGTGCGGGAGATTA+AGG - chr1_1:66304310-66304329 Msa0037290:intron 40.0%
TAGTCAATGAACATGCAGTC+AGG + chr1_1:66304395-66304414 None:intergenic 40.0%
CTGATATAAGTGGTGGCTTT+CGG - chr1_1:66304419-66304438 Msa0037290:intron 40.0%
TGATATAAGTGGTGGCTTTC+GGG - chr1_1:66304420-66304439 Msa0037290:intron 40.0%
ATCTGCAGCAAATGTAAAGC+AGG + chr1_1:66304461-66304480 None:intergenic 40.0%
!!! TGTTTTAGGGAGTTCGTAGT+TGG + chr1_1:66304587-66304606 None:intergenic 40.0%
! GTGAGGCTATCACTGTTTTA+GGG + chr1_1:66304600-66304619 None:intergenic 40.0%
GAACCAGTGCTTAACAAAGA+TGG - chr1_1:66304622-66304641 Msa0037290:CDS 40.0%
ACTCCATCTTTGTTAAGCAC+TGG + chr1_1:66304628-66304647 None:intergenic 40.0%
AGAAGTGGCCAATTGTTAGT+AGG - chr1_1:66304974-66304993 Msa0037290:five_prime_UTR 40.0%
! TTTTGAGCCTGTTCAGATTG+AGG - chr1_1:66305044-66305063 Msa0037290:five_prime_UTR 40.0%
TTTGAGAAGATACAGGCATG+TGG + chr1_1:66305095-66305114 None:intergenic 40.0%
ATCTGCTCAATTGGCATCTT+TGG - chr1_1:66305120-66305139 Msa0037290:five_prime_UTR 40.0%
ATGCATTTGTGAGCTGTTCA+TGG - chr1_1:66305189-66305208 Msa0037290:five_prime_UTR 40.0%
TAGACTGAGCTGATTGAGTG+TGG + chr1_1:66302976-66302995 None:intergenic 45.0%
CTGATCCAAATCGGAGTAGT+AGG - chr1_1:66303039-66303058 Msa0037290:CDS 45.0%
TATACACAGCGTCCACATCA+GGG + chr1_1:66303233-66303252 None:intergenic 45.0%
ATATACACAGCGTCCACATC+AGG + chr1_1:66303234-66303253 None:intergenic 45.0%
CACTTAAGGTGCAAGCTTGT+TGG + chr1_1:66303264-66303283 None:intergenic 45.0%
CAACAAGCTTGCACCTTAAG+TGG - chr1_1:66303262-66303281 Msa0037290:CDS 45.0%
TGAAATTGTGGGAGCTTGTG+AGG - chr1_1:66303359-66303378 Msa0037290:CDS 45.0%
TGGGAGCTTGTGAGGATAAT+GGG - chr1_1:66303367-66303386 Msa0037290:CDS 45.0%
!!! TGTGCCATTTTAGCAGTCCT+AGG + chr1_1:66303429-66303448 None:intergenic 45.0%
!! CCGATTTGAGTTGACCAAAG+CGG + chr1_1:66303470-66303489 None:intergenic 45.0%
CCGCTTTGGTCAACTCAAAT+CGG - chr1_1:66303467-66303486 Msa0037290:intron 45.0%
AATTCGTAAGTCGGATCGGT+AGG - chr1_1:66303828-66303847 Msa0037290:intron 45.0%
! CGTGAGGCTATCACTGTTTT+AGG + chr1_1:66304601-66304620 None:intergenic 45.0%
TGGTGCATCACTATATTGGG+AGG - chr1_1:66304660-66304679 Msa0037290:CDS 45.0%
GCATCACTATATTGGGAGGA+TGG - chr1_1:66304664-66304683 Msa0037290:CDS 45.0%
ACTCTAAGCCTGAGAAGAAG+TGG - chr1_1:66304959-66304978 Msa0037290:five_prime_UTR 45.0%
ACAATTGGCCACTTCTTCTC+AGG + chr1_1:66304970-66304989 None:intergenic 45.0%
CTTCACTCCTCAATCTGAAC+AGG + chr1_1:66305054-66305073 None:intergenic 45.0%
TCAGATTGAGGAGTGAAGCA+AGG - chr1_1:66305056-66305075 Msa0037290:five_prime_UTR 45.0%
CACAGCCTACTACTCCGATT+TGG + chr1_1:66303047-66303066 None:intergenic 50.0%
CGTATACCTTCGCTGTCAGA+GGG + chr1_1:66303185-66303204 None:intergenic 50.0%
! CCTCTGACAGCGAAGGTATA+CGG - chr1_1:66303183-66303202 Msa0037290:CDS 50.0%
TCTACTGGAAGACCCTGATG+TGG - chr1_1:66303218-66303237 Msa0037290:CDS 50.0%
!! AGGTGCAAGCTTGTTGGTAG+TGG + chr1_1:66303258-66303277 None:intergenic 50.0%
CTTATTCTGGGCCGCAAGAA+CGG + chr1_1:66303289-66303308 None:intergenic 50.0%
TCAGCAATATCCAGCGCAAC+GGG + chr1_1:66303333-66303352 None:intergenic 50.0%
CTCAGCAATATCCAGCGCAA+CGG + chr1_1:66303334-66303353 None:intergenic 50.0%
GTGGGAGCTTGTGAGGATAA+TGG - chr1_1:66303366-66303385 Msa0037290:CDS 50.0%
GGGAGCTTGTGAGGATAATG+GGG - chr1_1:66303368-66303387 Msa0037290:CDS 50.0%
TTCAATGATCCGCACCGCTT+TGG - chr1_1:66303453-66303472 Msa0037290:intron 50.0%
!! TTGAGTTGACCAAAGCGGTG+CGG + chr1_1:66303465-66303484 None:intergenic 50.0%
!! TAGGATTGGTCGGCCAATGA+AGG - chr1_1:66303780-66303799 Msa0037290:intron 50.0%
GTAACATCGAAGCACGGTTG+AGG - chr1_1:66303944-66303963 Msa0037290:intron 50.0%
!! AAGCACGGTTGAGGTGTTGT+GGG - chr1_1:66303953-66303972 Msa0037290:intron 50.0%
AAGCCAGATCTTGACGCACA+TGG - chr1_1:66304511-66304530 Msa0037290:CDS 50.0%
GAACCATGTGCGTCAAGATC+TGG + chr1_1:66304517-66304536 None:intergenic 50.0%
CTTGACGCACATGGTTCTCT+AGG - chr1_1:66304520-66304539 Msa0037290:CDS 50.0%
CATGGTTCTCTAGGTGATGC+AGG - chr1_1:66304529-66304548 Msa0037290:CDS 50.0%
GTTCTCTAGGTGATGCAGGT+TGG - chr1_1:66304533-66304552 Msa0037290:CDS 50.0%
GTTCGTAGTTGGCAGCTAAG+AGG + chr1_1:66304576-66304595 None:intergenic 50.0%
!! GTTAAGCACTGGTTCACGTG+AGG + chr1_1:66304617-66304636 None:intergenic 50.0%
TCTTCCTCAAGAGGCTCTCT+TGG - chr1_1:66304894-66304913 Msa0037290:five_prime_UTR 50.0%
GTAACCAAGAGAGCCTCTTG+AGG + chr1_1:66304901-66304920 None:intergenic 50.0%
! GGCGTTTGGGGATAGGTTGA+TGG + chr1_1:66303097-66303116 None:intergenic 55.0%
! AGATGGTGGCGTTTGGGGAT+AGG + chr1_1:66303104-66303123 None:intergenic 55.0%
TGTCAGAGGGTAGCCATTGG+CGG + chr1_1:66303172-66303191 None:intergenic 55.0%
CCGTATACCTTCGCTGTCAG+AGG + chr1_1:66303186-66303205 None:intergenic 55.0%
CGGCAACTACGAAGCTCTAC+TGG - chr1_1:66303203-66303222 Msa0037290:CDS 55.0%
CCTTAAGTGGGCCGTTCTTG+CGG - chr1_1:66303275-66303294 Msa0037290:CDS 55.0%
CCGTGCTTCGATGTTACGCA+GGG + chr1_1:66303941-66303960 None:intergenic 55.0%
CCCTGCGTAACATCGAAGCA+CGG - chr1_1:66303938-66303957 Msa0037290:intron 55.0%
ACCGTGCTTCGATGTTACGC+AGG + chr1_1:66303942-66303961 None:intergenic 55.0%
!! GAAGCACGGTTGAGGTGTTG+TGG - chr1_1:66303952-66303971 Msa0037290:intron 55.0%
! GGCTTTGTCGTAGTTGCGGC+TGG + chr1_1:66303136-66303155 None:intergenic 60.0%
! CGGCGGCTTTGTCGTAGTTG+CGG + chr1_1:66303140-66303159 None:intergenic 60.0%
CGCTGTCAGAGGGTAGCCAT+TGG + chr1_1:66303175-66303194 None:intergenic 60.0%
TGGCTACCCTCTGACAGCGA+AGG - chr1_1:66303176-66303195 Msa0037290:CDS 60.0%
CCGCAAGAACGGCCCACTTA+AGG + chr1_1:66303278-66303297 None:intergenic 60.0%
TCTTGAGAAGCCCGTTGCGC+TGG - chr1_1:66303320-66303339 Msa0037290:CDS 60.0%
TGGTGGCTTTCGGGCTGTAC+AGG - chr1_1:66304429-66304448 Msa0037290:CDS 60.0%
! GGCGCAGATGGTGGCGTTTG+GGG + chr1_1:66303109-66303128 None:intergenic 65.0%
! CGGCGCAGATGGTGGCGTTT+GGG + chr1_1:66303110-66303129 None:intergenic 65.0%
! ACGGCGCAGATGGTGGCGTT+TGG + chr1_1:66303111-66303130 None:intergenic 65.0%
GTCGTAGTTGCGGCTGGCGA+CGG + chr1_1:66303130-66303149 None:intergenic 65.0%
ATTGGCGGTGGCGAAAGCGG+CGG + chr1_1:66303157-66303176 None:intergenic 65.0%
GCCATTGGCGGTGGCGAAAG+CGG + chr1_1:66303160-66303179 None:intergenic 65.0%
CAGAGGGTAGCCATTGGCGG+TGG + chr1_1:66303169-66303188 None:intergenic 65.0%
! GCCGCTTTCGCCACCGCCAA+TGG - chr1_1:66303156-66303175 Msa0037290:CDS 70.0%
GCTGGCGACGGCGCAGATGG+TGG + chr1_1:66303118-66303137 None:intergenic 75.0%
! GCGGCTGGCGACGGCGCAGA+TGG + chr1_1:66303121-66303140 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 66302643 66305266 66302643 ID=Msa0037290;Name=Msa0037290
chr1_1 mRNA 66302643 66305266 66302643 ID=Msa0037290-mRNA-1;Parent=Msa0037290;Name=Msa0037290-mRNA-1;_AED=0.01;_eAED=0.01;_QI=384|1|1|1|1|1|2|195|360
chr1_1 exon 66302643 66303458 66302643 ID=Msa0037290-mRNA-1:exon:21423;Parent=Msa0037290-mRNA-1
chr1_1 exon 66304421 66305266 66304421 ID=Msa0037290-mRNA-1:exon:21422;Parent=Msa0037290-mRNA-1
chr1_1 five_prime_UTR 66304883 66305266 66304883 ID=Msa0037290-mRNA-1:five_prime_utr;Parent=Msa0037290-mRNA-1
chr1_1 CDS 66304421 66304882 66304421 ID=Msa0037290-mRNA-1:cds;Parent=Msa0037290-mRNA-1
chr1_1 CDS 66302838 66303458 66302838 ID=Msa0037290-mRNA-1:cds;Parent=Msa0037290-mRNA-1
chr1_1 three_prime_UTR 66302643 66302837 66302643 ID=Msa0037290-mRNA-1:three_prime_utr;Parent=Msa0037290-mRNA-1
Gene Sequence

>Msa0037290

ATGTCAGAAGCACTGATCCAAATCGGAGTAGTAGGCTGTGCCGACATAGCTCGTAAAGTTTCTCGCGCCATCAACCTATCCCCAAACGCCACCATCTGCGCCGTCGCCAGCCGCAACTACGACAAAGCCGCCGCTTTCGCCACCGCCAATGGCTACCCTCTGACAGCGAAGGTATACGGCAACTACGAAGCTCTACTGGAAGACCCTGATGTGGACGCTGTGTATATGCCACTACCAACAAGCTTGCACCTTAAGTGGGCCGTTCTTGCGGCCCAGAATAAGAAGCATTTGCTTCTTGAGAAGCCCGTTGCGCTGGATATTGCTGAGTTTGATGAAATTGTGGGAGCTTGTGAGGATAATGGGGTTCAGTTTATGGATAATACTATGTGGGTTCATAATCCTAGGACTGCTAAAATGGCACAGTTCTTCAATGATCCGCACCGCTTTGGTCAACTCAAATCGGTTCGCACCTGCTTTACATTTGCTGCAGATTCTGAATATCTAAAGAAAGACATTCGTGTGAAGCCAGATCTTGACGCACATGGTTCTCTAGGTGATGCAGGTTGGTATTGCATTCGTGCAATCCTCTTAGCTGCCAACTACGAACTCCCTAAAACAGTGATAGCCTCACGTGAACCAGTGCTTAACAAAGATGGAGTTATATTGGATTGTGGTGCATCACTATATTGGGAGGATGGTAAAGTAGCTACATTTCATTGCTCTTTCTTAGCAAACTTGACAATGGATATAACAGCTATTGGAACAAAAGGAACTCTTCATGTTCATGATTTTATTATTCCTTATGAAGAGAATGAAGCATCTTTTCATGTTGGTACTGAAACTAGCTTTGATGATCTTGTTACTTGTTGGTCTAAACAGCCAATTAAGTGTACTGTTAAAACTGATCTTCCTCAAGAGGCTCTCTTGGTTACAGAATTTGCTCGTTTAGTGGGTGAAATTAAATTTAGAAACTCTAAGCCTGAGAAGAAGTGGCCAATTGTTAGTAGGAAAACACAACTTGTGTTGAATGCTGTTAAGTCTTCAATTCATAGGGGTTTTGAGCCTGTTCAGATTGAGGAGTGA
Protein sequence

>Msa0037290

MSEALIQIGVVGCADIARKVSRAINLSPNATICAVASRNYDKAAAFATANGYPLTAKVYGNYEALLEDPDVDAVYMPLPTSLHLKWAVLAAQNKKHLLLEKPVALDIAEFDEIVGACEDNGVQFMDNTMWVHNPRTAKMAQFFNDPHRFGQLKSVRTCFTFAADSEYLKKDIRVKPDLDAHGSLGDAGWYCIRAILLAANYELPKTVIASREPVLNKDGVILDCGASLYWEDGKVATFHCSFLANLTMDITAIGTKGTLHVHDFIIPYEENEASFHVGTETSFDDLVTCWSKQPIKCTVKTDLPQEALLVTEFARLVGEIKFRNSKPEKKWPIVSRKTQLVLNAVKSSIHRGFEPVQIEE*