AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0718560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0718560 MtrunA17_Chr5g0407811 98.276 406 7 0 2 407 3 408 0.0 815
Msa0718560 MtrunA17_Chr1g0168531 96.049 405 16 0 3 407 47 451 0.0 753
Msa0718560 MtrunA17_Chr1g0181761 93.564 404 26 0 4 407 2 405 0.0 741
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0718560 AT3G09630.1 82.469 405 71 0 3 407 2 406 0.0 690
Msa0718560 AT3G09630.2 82.222 405 71 1 3 407 2 405 0.0 683
Msa0718560 AT5G02870.1 81.327 407 76 0 1 407 1 407 0.0 682
Msa0718560 AT5G02870.2 81.081 407 76 1 1 407 1 406 0.0 675

Find 177 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAAATTGGATTCGATTTA+TGG 0.106449 5_1:+12790213 Msa0718560:CDS
AAGGGACCGTTGATTGTTTA+TGG 0.172085 5_1:+12790051 Msa0718560:CDS
TTATCTGAACTAAATAATTT+TGG 0.199263 5_1:+12792687 Msa0718560:three_prime_UTR
GAAAACTAAGGAGGCTATTA+AGG 0.230890 5_1:+12789924 Msa0718560:CDS
GCTTGCACCGGGTGGGCATT+TGG 0.242314 5_1:+12790158 Msa0718560:CDS
GTTCCTCATCTTCCCCTTCC+CGG 0.264935 5_1:-12790010 None:intergenic
CGGTGGACATTTCCGATTCT+AGG 0.271462 5_1:-12789465 None:intergenic
AACTATGGCGAACATATAAA+TGG 0.273513 5_1:-12792652 None:intergenic
CGTGCTGGTCAGGCTGCTTT+TGG 0.280197 5_1:+12789694 Msa0718560:CDS
CCTGAGTTTCCTCTTGTTGT+TGG 0.285780 5_1:+12789880 Msa0718560:CDS
AATTTGACAACTTCTCTAAA+TGG 0.287943 5_1:+12792608 Msa0718560:CDS
GCAGAAACTCAATATATCTT+TGG 0.294542 5_1:-12793099 None:intergenic
AGCTTCTGCTATTCCTTCAT+TGG 0.305726 5_1:+12789825 Msa0718560:CDS
TCACGTATTCCTCGTGTTGC+AGG 0.319460 5_1:+12789658 Msa0718560:CDS
ATGTAGTGTCTAGTGTGTTT+TGG 0.320908 5_1:-12789294 None:intergenic
AGGTTTGGTGACCAGCTTTC+CGG 0.324392 5_1:-12789603 None:intergenic
CTCTTAACATCCTTCTTAAT+CGG 0.329533 5_1:-12790351 None:intergenic
CTTGCACCGGGTGGGCATTT+GGG 0.333428 5_1:+12790159 Msa0718560:CDS
AGCTTTCCCTGCAGCCTTGA+TGG 0.333710 5_1:-12792548 None:intergenic
GCTGCTGCTGCGGCGGCCAT+TGG 0.334418 5_1:-12789418 None:intergenic
ATAGTGAGGCACCACAATTT+TGG 0.349562 5_1:+12792954 Msa0718560:three_prime_UTR
AGAAATTGGATTCGATTTAT+GGG 0.365248 5_1:+12790214 Msa0718560:CDS
ACATTTCCGATTCTAGGGTT+TGG 0.372412 5_1:-12789459 None:intergenic
TGGAAGGGTGGTTGGTGAAT+CGG 0.372987 5_1:-12789485 None:intergenic
ATTTGGGTAGGTTTGTGATT+TGG 0.373636 5_1:+12790175 Msa0718560:CDS
GCTGCTGCGGCGGCCATTGG+TGG 0.376380 5_1:-12789415 None:intergenic
AACTCAATATATCTTTGGTT+TGG 0.378578 5_1:-12793094 None:intergenic
CTCTTAGCAGTCTTGGCATA+AGG 0.381657 5_1:-12790429 None:intergenic
CGAAGGGGCGAAGGCGGTTA+AGG 0.381946 5_1:+12790077 Msa0718560:CDS
CCCATGATTCAGCTGAGGTT+TGG 0.398368 5_1:-12789618 None:intergenic
GGAAGGGGAAGATGAGGAAC+AGG 0.401302 5_1:+12790013 Msa0718560:CDS
CTTTGCTTGCTGAGGCTGAA+AGG 0.401451 5_1:+12790457 Msa0718560:CDS
GCTGCGGCGGCCATTGGTGG+AGG 0.401489 5_1:-12789412 None:intergenic
CCACAAGGATCTGGAGGAAA+TGG 0.401682 5_1:+12789749 Msa0718560:CDS
TGGACGAAGTTGACGATGTC+AGG 0.402562 5_1:-12789538 None:intergenic
GCTGACGGCGTAAGGTTGTC+TGG 0.404851 5_1:-12789581 None:intergenic
ATTCCTCGTGTTGCAGGTGG+TGG 0.407586 5_1:+12789664 Msa0718560:CDS
GTGTAAGCCTTGCGTAGTTT+TGG 0.408233 5_1:+12792907 Msa0718560:three_prime_UTR
GAAGAGAAAGACTGTCTCTA+AGG 0.412134 5_1:+12790509 Msa0718560:CDS
TTCCTCATCTTCCCCTTCCC+GGG 0.419374 5_1:-12790009 None:intergenic
GATTTATGGGACGTTTGATA+AGG 0.419895 5_1:+12790227 Msa0718560:CDS
CATTTCCTCCAGATCCTTGT+GGG 0.422522 5_1:-12789748 None:intergenic
TGGGACCCACCGTGCTGGTC+AGG 0.423632 5_1:+12789684 Msa0718560:CDS
ATATATCTTTGGTTTGGCAC+TGG 0.425803 5_1:-12793088 None:intergenic
AGCTAGGTGCATACCTTACT+TGG 0.430184 5_1:-12792858 None:intergenic
GCCAATCGAAAATGAGGTTA+AGG 0.440215 5_1:-12793297 None:intergenic
TGTTTGCTCCCACAAGGATC+TGG 0.440906 5_1:+12789740 Msa0718560:CDS
ACCAAACCTCAGCTGAATCA+TGG 0.447157 5_1:+12789617 Msa0718560:CDS
ATTGAAGCACGCATGACATC+GGG 0.449044 5_1:-12789511 None:intergenic
TGCTGAGGCTGAAAGGGTTA+AGG 0.459340 5_1:+12790464 Msa0718560:CDS
CTTAACCGCCTTCGCCCCTT+CGG 0.464630 5_1:-12790076 None:intergenic
ATGCTGTCCCTGGCCAAGTA+AGG 0.466393 5_1:+12792845 Msa0718560:three_prime_UTR
TGGTTCTTGCTCGTGGTCAC+AGG 0.467976 5_1:+12789845 Msa0718560:CDS
ACAACTTCTCTAAATGGCTA+GGG 0.469584 5_1:+12792614 Msa0718560:CDS
TTTGCTTGCTGAGGCTGAAA+GGG 0.469665 5_1:+12790458 Msa0718560:CDS
AGCCATCCTCTTAGCAGTCT+TGG 0.471110 5_1:-12790436 None:intergenic
GCTTCTGCCATCAAGGCTGC+AGG 0.471561 5_1:+12792541 Msa0718560:CDS
TAAGGATCCTTTAAAAGTGC+TGG 0.475095 5_1:-12793279 None:intergenic
GTGTGTGTCGTGTGAGAAGA+AGG 0.476941 5_1:-12789341 None:intergenic
CCAAACCTCAGCTGAATCAT+GGG 0.477617 5_1:+12789618 Msa0718560:CDS
AATGTGTAATAATCTTAAAC+CGG 0.479016 5_1:-12792724 None:intergenic
TGGGACGTTTGATAAGGCTT+CGG 0.482712 5_1:+12790233 Msa0718560:CDS
GCTTTCCGGCTGACGGCGTA+AGG 0.484743 5_1:-12789589 None:intergenic
CACAATCCAAACCCTAGAAT+CGG 0.486018 5_1:+12789453 Msa0718560:CDS
GGGACGTGCTGCTGCTGCGG+CGG 0.488156 5_1:-12789425 None:intergenic
GCACGCATGACATCGGGGAT+TGG 0.488868 5_1:-12789505 None:intergenic
GTGACCAGCTTTCCGGCTGA+CGG 0.489052 5_1:-12789596 None:intergenic
AGAATCTTAATGTTATGCTC+AGG 0.492457 5_1:+12790400 Msa0718560:CDS
TACGCCGTCAGCCGGAAAGC+TGG 0.492481 5_1:+12789592 Msa0718560:CDS
TAAGGTATGCACCTAGCTAT+CGG 0.496967 5_1:+12792863 Msa0718560:three_prime_UTR
TTCTGCAAAATCACTTTGCA+CGG 0.501030 5_1:+12793116 Msa0718560:three_prime_UTR
CACCGGGTGGGCATTTGGGT+AGG 0.501033 5_1:+12790163 Msa0718560:CDS
TGAAAGGGTTAAGGCTAAGA+AGG 0.502198 5_1:+12790473 Msa0718560:CDS
GGTGGACATTTCCGATTCTA+GGG 0.503679 5_1:-12789464 None:intergenic
TGTGTTACCTAGGGCTAAGA+TGG 0.505310 5_1:+12790272 Msa0718560:CDS
TTTCTTCCTCCCTCCACCAA+TGG 0.505861 5_1:+12789402 Msa0718560:exon
TCAAGGCTGCAGGGAAAGCT+TGG 0.505941 5_1:+12792551 Msa0718560:CDS
GAAAAGGCCAAGGATAGCCT+TGG 0.508889 5_1:+12789979 Msa0718560:CDS
GACAACCTTACGCCGTCAGC+CGG 0.509508 5_1:+12789584 Msa0718560:CDS
GTTGTTGGTGATGCTGCTGA+AGG 0.512772 5_1:+12789895 Msa0718560:CDS
GTTTGTGATTTGGACTAAGT+CGG 0.513758 5_1:+12790185 Msa0718560:CDS
GACAACTTCTCTAAATGGCT+AGG 0.516462 5_1:+12792613 Msa0718560:CDS
AAGGTATGCACCTAGCTATC+GGG 0.517073 5_1:+12792864 Msa0718560:three_prime_UTR
GCATGACATCGGGGATTGGA+AGG 0.518132 5_1:-12789501 None:intergenic
CGATTAAGAAGGATGTTAAG+AGG 0.519292 5_1:+12790352 Msa0718560:CDS
TCGGGGATTGGAAGGGTGGT+TGG 0.519537 5_1:-12789493 None:intergenic
CTGCGGCGGCCATTGGTGGA+GGG 0.520408 5_1:-12789411 None:intergenic
GAGGATGGCTTTGCTTGCTG+AGG 0.523283 5_1:+12790449 Msa0718560:CDS
GGAGGAAGCTTCTGCCATCA+AGG 0.523621 5_1:+12792534 Msa0718560:intron
TCTAATCCCAAGGCTATCCT+TGG 0.524268 5_1:-12789986 None:intergenic
AATACGTGAAACAGCACGTC+CGG 0.525790 5_1:-12789644 None:intergenic
TTGGGATTAGACCCGGGAAG+GGG 0.526474 5_1:+12789998 Msa0718560:CDS
AATTTGTTATATGCTGTCCC+TGG 0.527625 5_1:+12792835 Msa0718560:three_prime_UTR
GGTGCATACCTTACTTGGCC+AGG 0.528908 5_1:-12792853 None:intergenic
CCATTTCCTCCAGATCCTTG+TGG 0.531420 5_1:-12789749 None:intergenic
GGGAGGAAGAAACACTAGCT+AGG 0.532621 5_1:-12789391 None:intergenic
AGAAAGGGTATGTGTTACCT+AGG 0.534239 5_1:+12790262 Msa0718560:CDS
TGTTGTGAGGCCGATTAAGA+AGG 0.535007 5_1:+12790341 Msa0718560:CDS
CCTTCATTGGTTCTTGCTCG+TGG 0.536411 5_1:+12789838 Msa0718560:CDS
ATAACATTAAGATTCTTAAG+TGG 0.536775 5_1:-12790393 None:intergenic
TGCTGATGCTGAAAAGGCCA+AGG 0.537379 5_1:+12789969 Msa0718560:CDS
TCAACTACAATATGTAGCAC+AGG 0.538236 5_1:-12793022 None:intergenic
AAAAGGCCAAGGATAGCCTT+GGG 0.538830 5_1:+12789980 Msa0718560:CDS
TGGTGAATTCTGATTTGACT+AGG 0.539110 5_1:+12790292 Msa0718560:CDS
CTAGGGTTTGGATTGTGACA+AGG 0.543262 5_1:-12789447 None:intergenic
AAGGCTTCGGAGAAGAAGAA+AGG 0.545763 5_1:+12790246 Msa0718560:CDS
CGGCGGCCATTGGTGGAGGG+AGG 0.548170 5_1:-12789408 None:intergenic
TTGATTGTTTATGGTACCGA+AGG 0.548502 5_1:+12790060 Msa0718560:CDS
GGTGGTGGGACCCACCGTGC+TGG 0.549222 5_1:+12789679 Msa0718560:CDS
TCAGCAGACACCCGATAGCT+AGG 0.550548 5_1:-12792874 None:intergenic
AACCTACCCAAATGCCCACC+CGG 0.552263 5_1:-12790165 None:intergenic
AGCAGCCTGACCAGCACGGT+GGG 0.552373 5_1:-12789689 None:intergenic
GACATCGGGGATTGGAAGGG+TGG 0.554910 5_1:-12789497 None:intergenic
CCTTGGGATTAGACCCGGGA+AGG 0.558086 5_1:+12789996 Msa0718560:CDS
AAGGGGACGTGCTGCTGCTG+CGG 0.559754 5_1:-12789428 None:intergenic
TGATTGTTTATGGTACCGAA+GGG 0.561790 5_1:+12790061 Msa0718560:CDS
TGGCGTTGAGATTACTAATG+TGG 0.562146 5_1:+12790116 Msa0718560:CDS
GATTGAAGCACGCATGACAT+CGG 0.563386 5_1:-12789512 None:intergenic
CTTATGCCAAGACTGCTAAG+AGG 0.565343 5_1:+12790430 Msa0718560:CDS
TTATGGTACCGAAGGGGCGA+AGG 0.567293 5_1:+12790068 Msa0718560:CDS
GATAGCCTTGGGATTAGACC+CGG 0.567327 5_1:+12789991 Msa0718560:CDS
CTTGGGATTAGACCCGGGAA+GGG 0.569338 5_1:+12789997 Msa0718560:CDS
GAATTCACCATCTTAGCCCT+AGG 0.569796 5_1:-12790279 None:intergenic
TTCCTCGTGTTGCAGGTGGT+GGG 0.571891 5_1:+12789665 Msa0718560:CDS
TACACATTATGCAGACAGCA+TGG 0.574711 5_1:+12792739 Msa0718560:three_prime_UTR
TCAGCTGAATCATGGGGTAC+CGG 0.577134 5_1:+12789625 Msa0718560:CDS
CGAAGTTGACGATGTCAGGA+CGG 0.577332 5_1:-12789534 None:intergenic
CGTATTCCTCGTGTTGCAGG+TGG 0.577884 5_1:+12789661 Msa0718560:CDS
TGAAGGAGTAGAGAAAACTA+AGG 0.578428 5_1:+12789912 Msa0718560:CDS
CCTTCCCGGGTCTAATCCCA+AGG 0.579401 5_1:-12789996 None:intergenic
TAGGGTTTGGATTGTGACAA+GGG 0.579491 5_1:-12789446 None:intergenic
ACATTAGTAATCTCAACGCC+AGG 0.581605 5_1:-12790114 None:intergenic
ATAATCAGAATCTGAGACCA+TGG 0.582620 5_1:-12792581 None:intergenic
GGAGGAAGAAACACTAGCTA+GGG 0.583478 5_1:-12789390 None:intergenic
CTGCAGGCCAATCGAAAATG+AGG 0.584429 5_1:-12793303 None:intergenic
GCAGCATCACCAACAACAAG+AGG 0.587525 5_1:-12789889 None:intergenic
TTACACTACAAAATCACAGT+GGG 0.590022 5_1:-12793152 None:intergenic
CAACTTCTCTAAATGGCTAG+GGG 0.592153 5_1:+12792615 Msa0718560:CDS
CATGACATCGGGGATTGGAA+GGG 0.594076 5_1:-12789500 None:intergenic
CAGGCGATATATATCGCGAA+AGG 0.594349 5_1:+12790032 Msa0718560:CDS
GACCCGGGAAGGGGAAGATG+AGG 0.595589 5_1:+12790007 Msa0718560:CDS
GGATCTGGAGGAAATGGCAT+AGG 0.598192 5_1:+12789755 Msa0718560:CDS
CTTCTGCCATCAAGGCTGCA+GGG 0.598308 5_1:+12792542 Msa0718560:CDS
TGCCAAGACTGCTAAGAGGA+TGG 0.598875 5_1:+12790434 Msa0718560:CDS
ATATATTCCAAAACTACGCA+AGG 0.599988 5_1:-12792914 None:intergenic
CCACGAGCAAGAACCAATGA+AGG 0.600012 5_1:-12789838 None:intergenic
AGGCTTCGGAGAAGAAGAAA+GGG 0.601116 5_1:+12790247 Msa0718560:CDS
AAGGGTGGTTGGTGAATCGG+TGG 0.603978 5_1:-12789482 None:intergenic
AGGCGATATATATCGCGAAA+GGG 0.605240 5_1:+12790033 Msa0718560:CDS
CCAACAACAAGAGGAAACTC+AGG 0.606988 5_1:-12789880 None:intergenic
GTGCATACCTTACTTGGCCA+GGG 0.608278 5_1:-12792852 None:intergenic
GAAAGGGTATGTGTTACCTA+GGG 0.612369 5_1:+12790263 Msa0718560:CDS
CAATTTATTACACAAACTAG+AGG 0.621174 5_1:-12793209 None:intergenic
AGGAGTAGAGAAAACTAAGG+AGG 0.635842 5_1:+12789915 Msa0718560:CDS
GTAGAATGTTTGCTCCCACA+AGG 0.636493 5_1:+12789734 Msa0718560:CDS
TCGGTACCATAAACAATCAA+CGG 0.638403 5_1:-12790057 None:intergenic
TGGTACCGAAGGGGCGAAGG+CGG 0.639215 5_1:+12790071 Msa0718560:CDS
TAGGATTATTAATAGTGATG+AGG 0.640452 5_1:+12790311 Msa0718560:CDS
GATTAAGAAGGATGTTAAGA+GGG 0.643145 5_1:+12790353 Msa0718560:CDS
CAACTACAATATGTAGCACA+GGG 0.643345 5_1:-12793021 None:intergenic
GTCCCACCACCTGCAACACG+AGG 0.646810 5_1:-12789667 None:intergenic
ATAGCCTTGGGATTAGACCC+GGG 0.646880 5_1:+12789992 Msa0718560:CDS
TGTGTGTCGTGTGAGAAGAA+GGG 0.647420 5_1:-12789340 None:intergenic
TTGCTCCCACAAGGATCTGG+AGG 0.649385 5_1:+12789743 Msa0718560:CDS
GGTACCCCATGATTCAGCTG+AGG 0.655914 5_1:-12789623 None:intergenic
AGGGTTTGGATTGTGACAAG+GGG 0.658090 5_1:-12789445 None:intergenic
CAAAAGCAGCCTGACCAGCA+CGG 0.671346 5_1:-12789693 None:intergenic
GATTGTTTATGGTACCGAAG+GGG 0.679160 5_1:+12790062 Msa0718560:CDS
TTTGGTAACATGTGTCGTGG+TGG 0.688796 5_1:+12789712 Msa0718560:CDS
TATTGGTAAGAATCATAGTG+AGG 0.691339 5_1:+12792940 Msa0718560:three_prime_UTR
ATTACACTACAAAATCACAG+TGG 0.701288 5_1:-12793153 None:intergenic
AAGCAGCCTGACCAGCACGG+TGG 0.701528 5_1:-12789690 None:intergenic
ATGAGGTGCAGAGTGTTGTG+AGG 0.702312 5_1:+12790328 Msa0718560:CDS
GAAAGCTTGGTATAACACCA+TGG 0.705586 5_1:+12792564 Msa0718560:CDS
TTGAAGCACGCATGACATCG+GGG 0.725773 5_1:-12789510 None:intergenic
CAAACCTCAGCTGAATCATG+GGG 0.734702 5_1:+12789619 Msa0718560:CDS
GGCAGTGTTTGAATTCACTG+TGG 0.734895 5_1:+12792996 Msa0718560:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTAATAGTTTTTGATT+TGG + chr5_1:12790984-12791003 Msa0718560:intron 10.0%
!!! TAATTAATAGTTTTTGATTT+GGG + chr5_1:12790985-12791004 Msa0718560:intron 10.0%
!!! TACAAAATGTTTTTAAAATA+TGG - chr5_1:12791446-12791465 None:intergenic 10.0%
!! CATACTAAATTATTAAAGTT+TGG - chr5_1:12790928-12790947 None:intergenic 15.0%
!!! ATAATTCATAGTTTTTGATT+TGG + chr5_1:12791132-12791151 Msa0718560:intron 15.0%
!!! TAATTCATAGTTTTTGATTT+GGG + chr5_1:12791133-12791152 Msa0718560:intron 15.0%
!!! TTTTTAAAATATGGTCAATT+TGG - chr5_1:12791437-12791456 None:intergenic 15.0%
!!! CAAATTTCTAAATTGATTTA+GGG + chr5_1:12791473-12791492 Msa0718560:intron 15.0%
!!! TCTTTTTTTCTTTTGTTTTA+CGG + chr5_1:12791560-12791579 Msa0718560:intron 15.0%
!!! ATTTAAATTTGAGATTGTAA+TGG - chr5_1:12791805-12791824 None:intergenic 15.0%
!!! AACTTAGTTTTATTTTAATC+TGG - chr5_1:12791847-12791866 None:intergenic 15.0%
!!! CTACTATTTTATTTAACAAT+TGG + chr5_1:12792024-12792043 Msa0718560:intron 15.0%
!!! TTATCTGAACTAAATAATTT+TGG + chr5_1:12792687-12792706 Msa0718560:three_prime_UTR 15.0%
!! ATAACATTAAGATTCTTAAG+TGG - chr5_1:12790396-12790415 None:intergenic 20.0%
!!! TTGATCATTTTATGTTGATT+TGG + chr5_1:12790686-12790705 Msa0718560:intron 20.0%
!!! ATTAAAGCACTAAATCTAAA+TGG - chr5_1:12790802-12790821 None:intergenic 20.0%
!! TTAGATTTAGTGCTTTAATT+AGG + chr5_1:12790803-12790822 Msa0718560:intron 20.0%
!!! ACAATCTCAACTTTTATATA+AGG - chr5_1:12790842-12790861 None:intergenic 20.0%
!! TTTCAACTAAAATCAAATAG+CGG - chr5_1:12791410-12791429 None:intergenic 20.0%
!! CCTAAATCAATTTAGAAATT+TGG - chr5_1:12791475-12791494 None:intergenic 20.0%
!!! CCAAATTTCTAAATTGATTT+AGG + chr5_1:12791472-12791491 Msa0718560:intron 20.0%
!! GTAAAACAAAAGAAAAAAAG+AGG - chr5_1:12791561-12791580 None:intergenic 20.0%
!!! AATCTGGTTTGTATAATTTA+GGG - chr5_1:12791831-12791850 None:intergenic 20.0%
!!! TAATCTGGTTTGTATAATTT+AGG - chr5_1:12791832-12791851 None:intergenic 20.0%
!! TCTTGCATGATAAATAATAA+GGG - chr5_1:12792060-12792079 None:intergenic 20.0%
!! TTCTTGCATGATAAATAATA+AGG - chr5_1:12792061-12792080 None:intergenic 20.0%
!!! AAGTATTTTTTAGTTGTAAG+TGG + chr5_1:12792080-12792099 Msa0718560:intron 20.0%
!!! AGTTTAAGACGATAAATAAA+TGG - chr5_1:12792478-12792497 None:intergenic 20.0%
!! AATGTGTAATAATCTTAAAC+CGG - chr5_1:12792727-12792746 None:intergenic 20.0%
!!! GTTTTGGAATATATCTATAT+TGG + chr5_1:12792923-12792942 Msa0718560:three_prime_UTR 20.0%
! AGAAATTGGATTCGATTTAT+GGG + chr5_1:12790214-12790233 Msa0718560:CDS 25.0%
! TAGGATTATTAATAGTGATG+AGG + chr5_1:12790311-12790330 Msa0718560:CDS 25.0%
! TTAAGACAATATAAGTGCAA+AGG - chr5_1:12791061-12791080 None:intergenic 25.0%
!!! AAATTGATTTAGGGCATTTT+AGG + chr5_1:12791482-12791501 Msa0718560:intron 25.0%
!!! AATTGATTTAGGGCATTTTA+GGG + chr5_1:12791483-12791502 Msa0718560:intron 25.0%
!!! GTTCTCTATCTTTTGTTTTT+TGG + chr5_1:12791614-12791633 Msa0718560:intron 25.0%
! CATCTTAAGTTATCAAAACT+TGG + chr5_1:12791867-12791886 Msa0718560:intron 25.0%
! ATAAAATAGTAGAGTAAACC+AGG - chr5_1:12792016-12792035 None:intergenic 25.0%
!!! GTTTGTTTTTTGCAGAATAA+TGG + chr5_1:12792347-12792366 Msa0718560:intron 25.0%
! AATTTGACAACTTCTCTAAA+TGG + chr5_1:12792608-12792627 Msa0718560:CDS 25.0%
! TAACCACACAAAAAAAACTA+TGG - chr5_1:12792670-12792689 None:intergenic 25.0%
! AACTCAATATATCTTTGGTT+TGG - chr5_1:12793097-12793116 None:intergenic 25.0%
! CAATTTATTACACAAACTAG+AGG - chr5_1:12793212-12793231 None:intergenic 25.0%
!! AGTTTTTGGAAATGTTGGAA+TGG - chr5_1:12789561-12789580 None:intergenic 30.0%
GAGAAATTGGATTCGATTTA+TGG + chr5_1:12790213-12790232 Msa0718560:CDS 30.0%
CTCTTAACATCCTTCTTAAT+CGG - chr5_1:12790354-12790373 None:intergenic 30.0%
GATTAAGAAGGATGTTAAGA+GGG + chr5_1:12790353-12790372 Msa0718560:CDS 30.0%
AGAATCTTAATGTTATGCTC+AGG + chr5_1:12790400-12790419 Msa0718560:CDS 30.0%
CATTCAAAAATCAAGCACAA+TGG - chr5_1:12790549-12790568 None:intergenic 30.0%
TTTGATTCTATCGTGAAGAT+AGG + chr5_1:12790875-12790894 Msa0718560:intron 30.0%
TTAACTTCATGTGTAAGTGA+GGG + chr5_1:12791035-12791054 Msa0718560:intron 30.0%
TTAACTTCATGTGTAAGTGA+GGG + chr5_1:12791035-12791054 Msa0718560:intron 30.0%
GTAATCATAGTAGTCAATAG+TGG + chr5_1:12791277-12791296 Msa0718560:intron 30.0%
! ACCAAATAGACTTTGTTGTA+TGG + chr5_1:12791514-12791533 Msa0718560:intron 30.0%
ACCATACAACAAAGTCTATT+TGG - chr5_1:12791518-12791537 None:intergenic 30.0%
! TTTGTTTATACTCCCACTTT+TGG + chr5_1:12791724-12791743 Msa0718560:intron 30.0%
!! TTGTTTATACTCCCACTTTT+GGG + chr5_1:12791725-12791744 Msa0718560:intron 30.0%
! TTAGTTGTAAGTGGATTTGA+TGG + chr5_1:12792089-12792108 Msa0718560:intron 30.0%
AATTAATAACTGCAATTCCC+AGG - chr5_1:12792130-12792149 None:intergenic 30.0%
!!! AGTGGATGAGTTGATTTTTT+GGG + chr5_1:12792202-12792221 Msa0718560:intron 30.0%
!!! GTTGATTTTTTGGGGAATAA+TGG + chr5_1:12792211-12792230 Msa0718560:intron 30.0%
!!! GCAGAATAATGGATGAATTT+TGG + chr5_1:12792358-12792377 Msa0718560:intron 30.0%
AACTATGGCGAACATATAAA+TGG - chr5_1:12792655-12792674 None:intergenic 30.0%
ATATATTCCAAAACTACGCA+AGG - chr5_1:12792917-12792936 None:intergenic 30.0%
TATTGGTAAGAATCATAGTG+AGG + chr5_1:12792940-12792959 Msa0718560:three_prime_UTR 30.0%
!!! GTAGTTTTTTGCCAAAATTG+TGG - chr5_1:12792968-12792987 None:intergenic 30.0%
TTTGGCAAAAAACTACACTT+TGG + chr5_1:12792972-12792991 Msa0718560:three_prime_UTR 30.0%
GCAGAAACTCAATATATCTT+TGG - chr5_1:12793102-12793121 None:intergenic 30.0%
TTACACTACAAAATCACAGT+GGG - chr5_1:12793155-12793174 None:intergenic 30.0%
ATTACACTACAAAATCACAG+TGG - chr5_1:12793156-12793175 None:intergenic 30.0%
! ATGTAGTGTCTAGTGTGTTT+TGG - chr5_1:12789297-12789316 None:intergenic 35.0%
!!! AAGAAGGGTTTGTTTTGTGA+TGG - chr5_1:12789328-12789347 None:intergenic 35.0%
!! TCTGGAGTTTTTGGAAATGT+TGG - chr5_1:12789566-12789585 None:intergenic 35.0%
TGAAGGAGTAGAGAAAACTA+AGG + chr5_1:12789912-12789931 Msa0718560:CDS 35.0%
GAAAACTAAGGAGGCTATTA+AGG + chr5_1:12789924-12789943 Msa0718560:CDS 35.0%
!!! ATTAAGGTTTTGAAGCAGGT+TGG + chr5_1:12789940-12789959 Msa0718560:CDS 35.0%
TCGGTACCATAAACAATCAA+CGG - chr5_1:12790060-12790079 None:intergenic 35.0%
! TTGATTGTTTATGGTACCGA+AGG + chr5_1:12790060-12790079 Msa0718560:CDS 35.0%
! TGATTGTTTATGGTACCGAA+GGG + chr5_1:12790061-12790080 Msa0718560:CDS 35.0%
!! AAGGCTTTTAGGAATATTCC+TGG + chr5_1:12790096-12790115 Msa0718560:CDS 35.0%
ATTTGGGTAGGTTTGTGATT+TGG + chr5_1:12790175-12790194 Msa0718560:CDS 35.0%
! GTTTGTGATTTGGACTAAGT+CGG + chr5_1:12790185-12790204 Msa0718560:CDS 35.0%
!! TAAGTCGGCTTTTGAGAAAT+TGG + chr5_1:12790200-12790219 Msa0718560:CDS 35.0%
GATTTATGGGACGTTTGATA+AGG + chr5_1:12790227-12790246 Msa0718560:CDS 35.0%
! TGGTGAATTCTGATTTGACT+AGG + chr5_1:12790292-12790311 Msa0718560:CDS 35.0%
CGATTAAGAAGGATGTTAAG+AGG + chr5_1:12790352-12790371 Msa0718560:CDS 35.0%
ACTAGAACATACATCTCCTT+TGG - chr5_1:12790731-12790750 None:intergenic 35.0%
GATTTGAATTGTGATCTTGC+TGG + chr5_1:12790759-12790778 Msa0718560:intron 35.0%
ATTCTATCGTGAAGATAGGA+CGG + chr5_1:12790879-12790898 Msa0718560:intron 35.0%
! TGATTTGGGTTTGTAGTGAT+TGG + chr5_1:12790999-12791018 Msa0718560:intron 35.0%
GTTAACTTCATGTGTAAGTG+AGG + chr5_1:12791034-12791053 Msa0718560:intron 35.0%
! TGATTTGGGTTTGTAGTGAT+TGG + chr5_1:12790999-12791018 Msa0718560:intron 35.0%
GTTAACTTCATGTGTAAGTG+AGG + chr5_1:12791034-12791053 Msa0718560:intron 35.0%
AAATCAAATAGCGGCTAAAG+CGG - chr5_1:12791401-12791420 None:intergenic 35.0%
!! TGTTTATACTCCCACTTTTG+GGG + chr5_1:12791726-12791745 Msa0718560:intron 35.0%
ACATTCATAGTAGTCGATCT+CGG - chr5_1:12791763-12791782 None:intergenic 35.0%
AGTAAAGAGCAGAATATGCA+AGG - chr5_1:12791975-12791994 None:intergenic 35.0%
TAAATAGTGACTGATCTTCC+TGG + chr5_1:12791995-12792014 Msa0718560:intron 35.0%
!!! GAGTGGATGAGTTGATTTTT+TGG + chr5_1:12792201-12792220 Msa0718560:intron 35.0%
!!! GTGGATGAGTTGATTTTTTG+GGG + chr5_1:12792203-12792222 Msa0718560:intron 35.0%
! AGAAAGAAGCATGGAACATA+TGG - chr5_1:12792259-12792278 None:intergenic 35.0%
AACACAATCAGAAAGAAGCA+TGG - chr5_1:12792268-12792287 None:intergenic 35.0%
ACACGGTTGAATGTCTAAAT+TGG - chr5_1:12792307-12792326 None:intergenic 35.0%
TCCACTCATCTAAATACACA+CGG - chr5_1:12792324-12792343 None:intergenic 35.0%
! ATAATCAGAATCTGAGACCA+TGG - chr5_1:12792584-12792603 None:intergenic 35.0%
ACAACTTCTCTAAATGGCTA+GGG + chr5_1:12792614-12792633 Msa0718560:CDS 35.0%
!!! TCGCCATAGTTTTTTTTGTG+TGG + chr5_1:12792664-12792683 Msa0718560:three_prime_UTR 35.0%
!!! TTTGGTTTTTTGTCGTTCTC+CGG + chr5_1:12792705-12792724 Msa0718560:three_prime_UTR 35.0%
!! AATTTGTTATATGCTGTCCC+TGG + chr5_1:12792835-12792854 Msa0718560:three_prime_UTR 35.0%
CAACTACAATATGTAGCACA+GGG - chr5_1:12793024-12793043 None:intergenic 35.0%
TCAACTACAATATGTAGCAC+AGG - chr5_1:12793025-12793044 None:intergenic 35.0%
!! ATATATCTTTGGTTTGGCAC+TGG - chr5_1:12793091-12793110 None:intergenic 35.0%
TTCTGCAAAATCACTTTGCA+CGG + chr5_1:12793116-12793135 Msa0718560:three_prime_UTR 35.0%
! TTAACGACCAGCACTTTTAA+AGG + chr5_1:12793272-12793291 Msa0718560:three_prime_UTR 35.0%
! TAAGGATCCTTTAAAAGTGC+TGG - chr5_1:12793282-12793301 None:intergenic 35.0%
! TCCTTAACCTCATTTTCGAT+TGG + chr5_1:12793296-12793315 Msa0718560:three_prime_UTR 35.0%
! AACACTAGCTAGGGTTTTTG+CGG - chr5_1:12789384-12789403 None:intergenic 40.0%
TAGGGTTTGGATTGTGACAA+GGG - chr5_1:12789449-12789468 None:intergenic 40.0%
CACAATCCAAACCCTAGAAT+CGG + chr5_1:12789453-12789472 Msa0718560:CDS 40.0%
!! ACATTTCCGATTCTAGGGTT+TGG - chr5_1:12789462-12789481 None:intergenic 40.0%
!! GTAAGGTTGTCTGGAGTTTT+TGG - chr5_1:12789575-12789594 None:intergenic 40.0%
AGCTTCTGCTATTCCTTCAT+TGG + chr5_1:12789825-12789844 Msa0718560:CDS 40.0%
AGGAGTAGAGAAAACTAAGG+AGG + chr5_1:12789915-12789934 Msa0718560:CDS 40.0%
!!! GGCTATTAAGGTTTTGAAGC+AGG + chr5_1:12789936-12789955 Msa0718560:CDS 40.0%
! TGCTTTTGCTGATGCTGAAA+AGG + chr5_1:12789963-12789982 Msa0718560:CDS 40.0%
AGGCGATATATATCGCGAAA+GGG + chr5_1:12790033-12790052 Msa0718560:CDS 40.0%
! AAGGGACCGTTGATTGTTTA+TGG + chr5_1:12790051-12790070 Msa0718560:CDS 40.0%
! GATTGTTTATGGTACCGAAG+GGG + chr5_1:12790062-12790081 Msa0718560:CDS 40.0%
ACATTAGTAATCTCAACGCC+AGG - chr5_1:12790117-12790136 None:intergenic 40.0%
! TGGCGTTGAGATTACTAATG+TGG + chr5_1:12790116-12790135 Msa0718560:CDS 40.0%
!!! GAATCTTTTGAAGCTTGCAC+CGG + chr5_1:12790146-12790165 Msa0718560:CDS 40.0%
!!! AATCTTTTGAAGCTTGCACC+GGG + chr5_1:12790147-12790166 Msa0718560:CDS 40.0%
! AGAAAGGGTATGTGTTACCT+AGG + chr5_1:12790262-12790281 Msa0718560:CDS 40.0%
! GAAAGGGTATGTGTTACCTA+GGG + chr5_1:12790263-12790282 Msa0718560:CDS 40.0%
TGAAAGGGTTAAGGCTAAGA+AGG + chr5_1:12790473-12790492 Msa0718560:CDS 40.0%
GAAGAGAAAGACTGTCTCTA+AGG + chr5_1:12790509-12790528 Msa0718560:CDS 40.0%
!! GTTGATTTGGTATTGCTCCT+AGG + chr5_1:12790699-12790718 Msa0718560:intron 40.0%
TTCTATCGTGAAGATAGGAC+GGG + chr5_1:12790880-12790899 Msa0718560:intron 40.0%
CATCCACTCATCTAAACACA+CGG - chr5_1:12792190-12792209 None:intergenic 40.0%
!!! GGGGAATAATGGATGACTTT+TGG + chr5_1:12792222-12792241 Msa0718560:intron 40.0%
GAAGCATGGAACATATGGAA+TGG - chr5_1:12792254-12792273 None:intergenic 40.0%
ACCGTGTGTATTTAGATGAG+TGG + chr5_1:12792320-12792339 Msa0718560:intron 40.0%
AGAAAGAAGCAGGGAACATA+TGG - chr5_1:12792395-12792414 None:intergenic 40.0%
AACACAGTCAGAAAGAAGCA+GGG - chr5_1:12792404-12792423 None:intergenic 40.0%
AAACACAGTCAGAAAGAAGC+AGG - chr5_1:12792405-12792424 None:intergenic 40.0%
GAAAGCTTGGTATAACACCA+TGG + chr5_1:12792564-12792583 Msa0718560:CDS 40.0%
GACAACTTCTCTAAATGGCT+AGG + chr5_1:12792613-12792632 Msa0718560:CDS 40.0%
CAACTTCTCTAAATGGCTAG+GGG + chr5_1:12792615-12792634 Msa0718560:CDS 40.0%
TACACATTATGCAGACAGCA+TGG + chr5_1:12792739-12792758 Msa0718560:three_prime_UTR 40.0%
TAAGGTATGCACCTAGCTAT+CGG + chr5_1:12792863-12792882 Msa0718560:three_prime_UTR 40.0%
!! ATAGTGAGGCACCACAATTT+TGG + chr5_1:12792954-12792973 Msa0718560:three_prime_UTR 40.0%
GGCAAAAAACTACACTTTGG+AGG + chr5_1:12792975-12792994 Msa0718560:three_prime_UTR 40.0%
GCCAATCGAAAATGAGGTTA+AGG - chr5_1:12793300-12793319 None:intergenic 40.0%
TGTGTGTCGTGTGAGAAGAA+GGG - chr5_1:12789343-12789362 None:intergenic 45.0%
! ACACTAGCTAGGGTTTTTGC+GGG - chr5_1:12789383-12789402 None:intergenic 45.0%
GGAGGAAGAAACACTAGCTA+GGG - chr5_1:12789393-12789412 None:intergenic 45.0%
AGGGTTTGGATTGTGACAAG+GGG - chr5_1:12789448-12789467 None:intergenic 45.0%
CTAGGGTTTGGATTGTGACA+AGG - chr5_1:12789450-12789469 None:intergenic 45.0%
GGTGGACATTTCCGATTCTA+GGG - chr5_1:12789467-12789486 None:intergenic 45.0%
ATTGAAGCACGCATGACATC+GGG - chr5_1:12789514-12789533 None:intergenic 45.0%
GATTGAAGCACGCATGACAT+CGG - chr5_1:12789515-12789534 None:intergenic 45.0%
ACCAAACCTCAGCTGAATCA+TGG + chr5_1:12789617-12789636 Msa0718560:CDS 45.0%
CCAAACCTCAGCTGAATCAT+GGG + chr5_1:12789618-12789637 Msa0718560:CDS 45.0%
CAAACCTCAGCTGAATCATG+GGG + chr5_1:12789619-12789638 Msa0718560:CDS 45.0%
AATACGTGAAACAGCACGTC+CGG - chr5_1:12789647-12789666 None:intergenic 45.0%
!! GCTTTTGGTAACATGTGTCG+TGG + chr5_1:12789709-12789728 Msa0718560:CDS 45.0%
! TTTGGTAACATGTGTCGTGG+TGG + chr5_1:12789712-12789731 Msa0718560:CDS 45.0%
GTAGAATGTTTGCTCCCACA+AGG + chr5_1:12789734-12789753 Msa0718560:CDS 45.0%
CATTTCCTCCAGATCCTTGT+GGG - chr5_1:12789751-12789770 None:intergenic 45.0%
CCAACAACAAGAGGAAACTC+AGG - chr5_1:12789883-12789902 None:intergenic 45.0%
! CCTGAGTTTCCTCTTGTTGT+TGG + chr5_1:12789880-12789899 Msa0718560:CDS 45.0%
AAAAGGCCAAGGATAGCCTT+GGG + chr5_1:12789980-12789999 Msa0718560:CDS 45.0%
TCTAATCCCAAGGCTATCCT+TGG - chr5_1:12789989-12790008 None:intergenic 45.0%
CAGGCGATATATATCGCGAA+AGG + chr5_1:12790032-12790051 Msa0718560:CDS 45.0%
TGGGACGTTTGATAAGGCTT+CGG + chr5_1:12790233-12790252 Msa0718560:CDS 45.0%
AAGGCTTCGGAGAAGAAGAA+AGG + chr5_1:12790246-12790265 Msa0718560:CDS 45.0%
AGGCTTCGGAGAAGAAGAAA+GGG + chr5_1:12790247-12790266 Msa0718560:CDS 45.0%
TGTGTTACCTAGGGCTAAGA+TGG + chr5_1:12790272-12790291 Msa0718560:CDS 45.0%
GAATTCACCATCTTAGCCCT+AGG - chr5_1:12790282-12790301 None:intergenic 45.0%
TGTTGTGAGGCCGATTAAGA+AGG + chr5_1:12790341-12790360 Msa0718560:CDS 45.0%
CTCTTAGCAGTCTTGGCATA+AGG - chr5_1:12790432-12790451 None:intergenic 45.0%
CTTATGCCAAGACTGCTAAG+AGG + chr5_1:12790430-12790449 Msa0718560:CDS 45.0%
! TTTGCTTGCTGAGGCTGAAA+GGG + chr5_1:12790458-12790477 Msa0718560:CDS 45.0%
ATCTCCTTTGGCAGAATCCT+AGG - chr5_1:12790719-12790738 None:intergenic 45.0%
TCTATCGTGAAGATAGGACG+GGG + chr5_1:12790881-12790900 Msa0718560:intron 45.0%
TAGTAGTCGATCTCGGAAAG+CGG - chr5_1:12791756-12791775 None:intergenic 45.0%
GGATTCTCATCATGCTCTTG+AGG + chr5_1:12791888-12791907 Msa0718560:intron 45.0%
! AGTGGATTTGATGGCAGCTT+TGG + chr5_1:12792098-12792117 Msa0718560:intron 45.0%
! TGGCAGCTTTGGTAAATTCC+TGG + chr5_1:12792109-12792128 Msa0718560:intron 45.0%
! GGCAGCTTTGGTAAATTCCT+GGG + chr5_1:12792110-12792129 Msa0718560:intron 45.0%
CAACCGTGTGTTTAGATGAG+TGG + chr5_1:12792184-12792203 Msa0718560:intron 45.0%
GAAGCAGGGAACATATGGAA+TGG - chr5_1:12792390-12792409 None:intergenic 45.0%
TGTGTTCCTTTCCCTCTTTC+AGG + chr5_1:12792513-12792532 Msa0718560:intron 45.0%
AGAAGCTTCCTCCTGAAAGA+GGG - chr5_1:12792527-12792546 None:intergenic 45.0%
AGCTAGGTGCATACCTTACT+TGG - chr5_1:12792861-12792880 None:intergenic 45.0%
AAGGTATGCACCTAGCTATC+GGG + chr5_1:12792864-12792883 Msa0718560:three_prime_UTR 45.0%
! GTGTAAGCCTTGCGTAGTTT+TGG + chr5_1:12792907-12792926 Msa0718560:three_prime_UTR 45.0%
GGCAGTGTTTGAATTCACTG+TGG + chr5_1:12792996-12793015 Msa0718560:three_prime_UTR 45.0%
GTGTGTGTCGTGTGAGAAGA+AGG - chr5_1:12789344-12789363 None:intergenic 50.0%
GGGAGGAAGAAACACTAGCT+AGG - chr5_1:12789394-12789413 None:intergenic 50.0%
TTTCTTCCTCCCTCCACCAA+TGG + chr5_1:12789402-12789421 Msa0718560:exon 50.0%
CGGTGGACATTTCCGATTCT+AGG - chr5_1:12789468-12789487 None:intergenic 50.0%
!! TGGAAGGGTGGTTGGTGAAT+CGG - chr5_1:12789488-12789507 None:intergenic 50.0%
CATGACATCGGGGATTGGAA+GGG - chr5_1:12789503-12789522 None:intergenic 50.0%
TTGAAGCACGCATGACATCG+GGG - chr5_1:12789513-12789532 None:intergenic 50.0%
CGAAGTTGACGATGTCAGGA+CGG - chr5_1:12789537-12789556 None:intergenic 50.0%
TGGACGAAGTTGACGATGTC+AGG - chr5_1:12789541-12789560 None:intergenic 50.0%
!! AGGTTTGGTGACCAGCTTTC+CGG - chr5_1:12789606-12789625 None:intergenic 50.0%
CCCATGATTCAGCTGAGGTT+TGG - chr5_1:12789621-12789640 None:intergenic 50.0%
TCAGCTGAATCATGGGGTAC+CGG + chr5_1:12789625-12789644 Msa0718560:CDS 50.0%
TCACGTATTCCTCGTGTTGC+AGG + chr5_1:12789658-12789677 Msa0718560:CDS 50.0%
TGTTTGCTCCCACAAGGATC+TGG + chr5_1:12789740-12789759 Msa0718560:CDS 50.0%
CCATTTCCTCCAGATCCTTG+TGG - chr5_1:12789752-12789771 None:intergenic 50.0%
CCACAAGGATCTGGAGGAAA+TGG + chr5_1:12789749-12789768 Msa0718560:CDS 50.0%
GGATCTGGAGGAAATGGCAT+AGG + chr5_1:12789755-12789774 Msa0718560:CDS 50.0%
CCACGAGCAAGAACCAATGA+AGG - chr5_1:12789841-12789860 None:intergenic 50.0%
!! CCTTCATTGGTTCTTGCTCG+TGG + chr5_1:12789838-12789857 Msa0718560:CDS 50.0%
GCAGCATCACCAACAACAAG+AGG - chr5_1:12789892-12789911 None:intergenic 50.0%
!! GTTGTTGGTGATGCTGCTGA+AGG + chr5_1:12789895-12789914 Msa0718560:CDS 50.0%
TGCTGATGCTGAAAAGGCCA+AGG + chr5_1:12789969-12789988 Msa0718560:CDS 50.0%
GAAAAGGCCAAGGATAGCCT+TGG + chr5_1:12789979-12789998 Msa0718560:CDS 50.0%
! GATAGCCTTGGGATTAGACC+CGG + chr5_1:12789991-12790010 Msa0718560:CDS 50.0%
! ATAGCCTTGGGATTAGACCC+GGG + chr5_1:12789992-12790011 Msa0718560:CDS 50.0%
! CGAAGGCGGTTAAGGCTTTT+AGG + chr5_1:12790085-12790104 Msa0718560:CDS 50.0%
!!! TTTTGAAGCTTGCACCGGGT+GGG + chr5_1:12790151-12790170 Msa0718560:CDS 50.0%
!! ATGAGGTGCAGAGTGTTGTG+AGG + chr5_1:12790328-12790347 Msa0718560:CDS 50.0%
TGCCAAGACTGCTAAGAGGA+TGG + chr5_1:12790434-12790453 Msa0718560:CDS 50.0%
AGCCATCCTCTTAGCAGTCT+TGG - chr5_1:12790439-12790458 None:intergenic 50.0%
! CTTTGCTTGCTGAGGCTGAA+AGG + chr5_1:12790457-12790476 Msa0718560:CDS 50.0%
TGCTGAGGCTGAAAGGGTTA+AGG + chr5_1:12790464-12790483 Msa0718560:CDS 50.0%
TGCTCCTAGGATTCTGCCAA+AGG + chr5_1:12790712-12790731 Msa0718560:intron 50.0%
CGGGGATCTCAATTGCATGA+AGG + chr5_1:12790899-12790918 Msa0718560:intron 50.0%
GTTCCTTTCCCTCTTTCAGG+AGG + chr5_1:12792516-12792535 Msa0718560:intron 50.0%
CTTCCTCCTGAAAGAGGGAA+AGG - chr5_1:12792522-12792541 None:intergenic 50.0%
CAGAAGCTTCCTCCTGAAAG+AGG - chr5_1:12792528-12792547 None:intergenic 50.0%
GTGCATACCTTACTTGGCCA+GGG - chr5_1:12792855-12792874 None:intergenic 50.0%
!! AAGGGTGGTTGGTGAATCGG+TGG - chr5_1:12789485-12789504 None:intergenic 55.0%
GCATGACATCGGGGATTGGA+AGG - chr5_1:12789504-12789523 None:intergenic 55.0%
GGTACCCCATGATTCAGCTG+AGG - chr5_1:12789626-12789645 None:intergenic 55.0%
CGTATTCCTCGTGTTGCAGG+TGG + chr5_1:12789661-12789680 Msa0718560:CDS 55.0%
ATTCCTCGTGTTGCAGGTGG+TGG + chr5_1:12789664-12789683 Msa0718560:CDS 55.0%
TTCCTCGTGTTGCAGGTGGT+GGG + chr5_1:12789665-12789684 Msa0718560:CDS 55.0%
CAAAAGCAGCCTGACCAGCA+CGG - chr5_1:12789696-12789715 None:intergenic 55.0%
TTGCTCCCACAAGGATCTGG+AGG + chr5_1:12789743-12789762 Msa0718560:CDS 55.0%
TGGTTCTTGCTCGTGGTCAC+AGG + chr5_1:12789845-12789864 Msa0718560:CDS 55.0%
CTTGGGATTAGACCCGGGAA+GGG + chr5_1:12789997-12790016 Msa0718560:CDS 55.0%
TTGGGATTAGACCCGGGAAG+GGG + chr5_1:12789998-12790017 Msa0718560:CDS 55.0%
TTCCTCATCTTCCCCTTCCC+GGG - chr5_1:12790012-12790031 None:intergenic 55.0%
GTTCCTCATCTTCCCCTTCC+CGG - chr5_1:12790013-12790032 None:intergenic 55.0%
GGAAGGGGAAGATGAGGAAC+AGG + chr5_1:12790013-12790032 Msa0718560:CDS 55.0%
! TTATGGTACCGAAGGGGCGA+AGG + chr5_1:12790068-12790087 Msa0718560:CDS 55.0%
!!! CTTTTGAAGCTTGCACCGGG+TGG + chr5_1:12790150-12790169 Msa0718560:CDS 55.0%
AACCTACCCAAATGCCCACC+CGG - chr5_1:12790168-12790187 None:intergenic 55.0%
! GAGGATGGCTTTGCTTGCTG+AGG + chr5_1:12790449-12790468 Msa0718560:CDS 55.0%
CTTATTCCGCACCGCTACGA+CGG - chr5_1:12791325-12791344 None:intergenic 55.0%
AGCGGTGCGGAATAAGACAG+CGG + chr5_1:12791329-12791348 Msa0718560:intron 55.0%
GGTCGCTTCAGCTGCTATAG+CGG + chr5_1:12791350-12791369 Msa0718560:intron 55.0%
AAGCGGCTGACCCCAAAAGT+GGG - chr5_1:12791739-12791758 None:intergenic 55.0%
AAAGCGGCTGACCCCAAAAG+TGG - chr5_1:12791740-12791759 None:intergenic 55.0%
GGAGGAAGCTTCTGCCATCA+AGG + chr5_1:12792534-12792553 Msa0718560:intron 55.0%
CTTCTGCCATCAAGGCTGCA+GGG + chr5_1:12792542-12792561 Msa0718560:CDS 55.0%
AGCTTTCCCTGCAGCCTTGA+TGG - chr5_1:12792551-12792570 None:intergenic 55.0%
TCAAGGCTGCAGGGAAAGCT+TGG + chr5_1:12792551-12792570 Msa0718560:CDS 55.0%
ATGCTGTCCCTGGCCAAGTA+AGG + chr5_1:12792845-12792864 Msa0718560:three_prime_UTR 55.0%
GGTGCATACCTTACTTGGCC+AGG - chr5_1:12792856-12792875 None:intergenic 55.0%
TCAGCAGACACCCGATAGCT+AGG - chr5_1:12792877-12792896 None:intergenic 55.0%
TCGGGGATTGGAAGGGTGGT+TGG - chr5_1:12789496-12789515 None:intergenic 60.0%
GACATCGGGGATTGGAAGGG+TGG - chr5_1:12789500-12789519 None:intergenic 60.0%
GCACGCATGACATCGGGGAT+TGG - chr5_1:12789508-12789527 None:intergenic 60.0%
GCTGACGGCGTAAGGTTGTC+TGG - chr5_1:12789584-12789603 None:intergenic 60.0%
GACAACCTTACGCCGTCAGC+CGG + chr5_1:12789584-12789603 Msa0718560:CDS 60.0%
GTGACCAGCTTTCCGGCTGA+CGG - chr5_1:12789599-12789618 None:intergenic 60.0%
!! CGTGCTGGTCAGGCTGCTTT+TGG + chr5_1:12789694-12789713 Msa0718560:CDS 60.0%
CCTTCCCGGGTCTAATCCCA+AGG - chr5_1:12789999-12790018 None:intergenic 60.0%
CCTTGGGATTAGACCCGGGA+AGG + chr5_1:12789996-12790015 Msa0718560:CDS 60.0%
CTTAACCGCCTTCGCCCCTT+CGG - chr5_1:12790079-12790098 None:intergenic 60.0%
CTTGCACCGGGTGGGCATTT+GGG + chr5_1:12790159-12790178 Msa0718560:CDS 60.0%
CGCTACGACGGTTAGCGTAG+CGG - chr5_1:12791313-12791332 None:intergenic 60.0%
CGCTACGCTAACCGTCGTAG+CGG + chr5_1:12791311-12791330 Msa0718560:intron 60.0%
CAGCTGCTATAGCGGCGTAG+TGG + chr5_1:12791358-12791377 Msa0718560:intron 60.0%
! GCTATAGCGGCGTAGTGGAG+CGG + chr5_1:12791363-12791382 Msa0718560:intron 60.0%
GCTTCTGCCATCAAGGCTGC+AGG + chr5_1:12792541-12792560 Msa0718560:CDS 60.0%
! AAGGGGACGTGCTGCTGCTG+CGG - chr5_1:12789431-12789450 None:intergenic 65.0%
GCTTTCCGGCTGACGGCGTA+AGG - chr5_1:12789592-12789611 None:intergenic 65.0%
TACGCCGTCAGCCGGAAAGC+TGG + chr5_1:12789592-12789611 Msa0718560:CDS 65.0%
GTCCCACCACCTGCAACACG+AGG - chr5_1:12789670-12789689 None:intergenic 65.0%
AGCAGCCTGACCAGCACGGT+GGG - chr5_1:12789692-12789711 None:intergenic 65.0%
AAGCAGCCTGACCAGCACGG+TGG - chr5_1:12789693-12789712 None:intergenic 65.0%
GACCCGGGAAGGGGAAGATG+AGG + chr5_1:12790007-12790026 Msa0718560:CDS 65.0%
! TGGTACCGAAGGGGCGAAGG+CGG + chr5_1:12790071-12790090 Msa0718560:CDS 65.0%
CGAAGGGGCGAAGGCGGTTA+AGG + chr5_1:12790077-12790096 Msa0718560:CDS 65.0%
GCTTGCACCGGGTGGGCATT+TGG + chr5_1:12790158-12790177 Msa0718560:CDS 65.0%
CACCGGGTGGGCATTTGGGT+AGG + chr5_1:12790163-12790182 Msa0718560:CDS 65.0%
CGCTAACCGTCGTAGCGGTG+CGG + chr5_1:12791316-12791335 Msa0718560:intron 65.0%
CTGCGGCGGCCATTGGTGGA+GGG - chr5_1:12789414-12789433 None:intergenic 70.0%
! TGGGACCCACCGTGCTGGTC+AGG + chr5_1:12789684-12789703 Msa0718560:CDS 70.0%
GTTAGCGTAGCGGCGACGCG+TGG - chr5_1:12791303-12791322 None:intergenic 70.0%
! AGCGGCGTAGTGGAGCGGAG+TGG + chr5_1:12791368-12791387 Msa0718560:intron 70.0%
CGGCGGCCATTGGTGGAGGG+AGG - chr5_1:12789411-12789430 None:intergenic 75.0%
GCTGCGGCGGCCATTGGTGG+AGG - chr5_1:12789415-12789434 None:intergenic 75.0%
GCTGCTGCGGCGGCCATTGG+TGG - chr5_1:12789418-12789437 None:intergenic 75.0%
GCTGCTGCTGCGGCGGCCAT+TGG - chr5_1:12789421-12789440 None:intergenic 75.0%
! GGGACGTGCTGCTGCTGCGG+CGG - chr5_1:12789428-12789447 None:intergenic 75.0%
!! GGTGGTGGGACCCACCGTGC+TGG + chr5_1:12789679-12789698 Msa0718560:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 12789294 12793320 12789294 ID=Msa0718560;Name=Msa0718560
chr5_1 mRNA 12789294 12793320 12789294 ID=Msa0718560-mRNA-1;Parent=Msa0718560;Name=Msa0718560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=127|1|1|1|1|1|2|672|407
chr5_1 exon 12789294 12790530 12789294 ID=Msa0718560-mRNA-1:exon:5256;Parent=Msa0718560-mRNA-1
chr5_1 exon 12792535 12793320 12792535 ID=Msa0718560-mRNA-1:exon:5257;Parent=Msa0718560-mRNA-1
chr5_1 five_prime_UTR 12789294 12789420 12789294 ID=Msa0718560-mRNA-1:five_prime_utr;Parent=Msa0718560-mRNA-1
chr5_1 CDS 12789421 12790530 12789421 ID=Msa0718560-mRNA-1:cds;Parent=Msa0718560-mRNA-1
chr5_1 CDS 12792535 12792648 12792535 ID=Msa0718560-mRNA-1:cds;Parent=Msa0718560-mRNA-1
chr5_1 three_prime_UTR 12792649 12793320 12792649 ID=Msa0718560-mRNA-1:three_prime_utr;Parent=Msa0718560-mRNA-1
Gene Sequence

>Msa0718560

ATGGCCGCCGCAGCAGCAGCACGTCCCCTTGTCACAATCCAAACCCTAGAATCGGAAATGTCCACCGATTCACCAACCACCCTTCCAATCCCCGATGTCATGCGTGCTTCAATCCGTCCTGACATCGTCAACTTCGTCCATTCCAACATTTCCAAAAACTCCAGACAACCTTACGCCGTCAGCCGGAAAGCTGGTCACCAAACCTCAGCTGAATCATGGGGTACCGGACGTGCTGTTTCACGTATTCCTCGTGTTGCAGGTGGTGGGACCCACCGTGCTGGTCAGGCTGCTTTTGGTAACATGTGTCGTGGTGGTAGAATGTTTGCTCCCACAAGGATCTGGAGGAAATGGCATAGGAAGATTAATGTTAATCAGAAACGTTATGCTGTTGTTTCAGCTATAGCAGCTTCTGCTATTCCTTCATTGGTTCTTGCTCGTGGTCACAGGATTGAGACTGTTCCTGAGTTTCCTCTTGTTGTTGGTGATGCTGCTGAAGGAGTAGAGAAAACTAAGGAGGCTATTAAGGTTTTGAAGCAGGTTGGTGCTTTTGCTGATGCTGAAAAGGCCAAGGATAGCCTTGGGATTAGACCCGGGAAGGGGAAGATGAGGAACAGGCGATATATATCGCGAAAGGGACCGTTGATTGTTTATGGTACCGAAGGGGCGAAGGCGGTTAAGGCTTTTAGGAATATTCCTGGCGTTGAGATTACTAATGTGGAGAAGTTGAATCTTTTGAAGCTTGCACCGGGTGGGCATTTGGGTAGGTTTGTGATTTGGACTAAGTCGGCTTTTGAGAAATTGGATTCGATTTATGGGACGTTTGATAAGGCTTCGGAGAAGAAGAAAGGGTATGTGTTACCTAGGGCTAAGATGGTGAATTCTGATTTGACTAGGATTATTAATAGTGATGAGGTGCAGAGTGTTGTGAGGCCGATTAAGAAGGATGTTAAGAGGGCTACTCTTAAGAAGAATCCACTTAAGAATCTTAATGTTATGCTCAGGCTTAATCCTTATGCCAAGACTGCTAAGAGGATGGCTTTGCTTGCTGAGGCTGAAAGGGTTAAGGCTAAGAAGGAGAAGCTCGATAAGAAGAGAAAGACTGTCTCTAAGGAGGAAGCTTCTGCCATCAAGGCTGCAGGGAAAGCTTGGTATAACACCATGGTCTCAGATTCTGATTATGCTGAATTTGACAACTTCTCTAAATGGCTAGGGGTTTCTCAGTAA

Protein sequence

>Msa0718560

MAAAAAARPLVTIQTLESEMSTDSPTTLPIPDVMRASIRPDIVNFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQAAFGNMCRGGRMFAPTRIWRKWHRKINVNQKRYAVVSAIAASAIPSLVLARGHRIETVPEFPLVVGDAAEGVEKTKEAIKVLKQVGAFADAEKAKDSLGIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEITNVEKLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGTFDKASEKKKGYVLPRAKMVNSDLTRIINSDEVQSVVRPIKKDVKRATLKKNPLKNLNVMLRLNPYAKTAKRMALLAEAERVKAKKEKLDKKRKTVSKEEASAIKAAGKAWYNTMVSDSDYAEFDNFSKWLGVSQ*