AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1414370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1414370 MtrunA17_Chr2g0278561 94.769 325 12 1 1 325 74 393 0.0 628
Msa1414370 MtrunA17_Chr2g0278021 76.157 281 61 3 56 330 1 281 1.28e-149 422
Msa1414370 MtrunA17_Chr2g0278541 59.807 311 117 3 1 303 71 381 4.74e-127 369
Msa1414370 MtrunA17_Chr2g0278551 53.538 325 147 2 1 325 71 391 5.37e-117 343
Msa1414370 MtrunA17_Chr2g0290611 56.271 295 121 3 1 295 71 357 1.67e-111 328
Msa1414370 MtrunA17_Chr4g0050941 54.487 312 136 3 1 308 72 381 3.88e-101 302
Msa1414370 MtrunA17_Chr4g0051021 50.974 308 145 3 1 303 73 379 1.22e-99 298
Msa1414370 MtrunA17_Chr2g0332001 49.505 303 145 4 1 301 97 393 1.27e-99 299
Msa1414370 MtrunA17_Chr4g0050891 53.257 261 118 2 1 258 72 331 7.16e-95 286
Msa1414370 MtrunA17_Chr4g0050881 51.095 274 134 0 1 274 67 340 8.15e-95 285
Msa1414370 MtrunA17_Chr4g0050931 47.500 280 104 3 1 276 71 311 3.93e-82 251
Msa1414370 MtrunA17_Chr4g0051001 49.793 241 121 0 1 241 90 330 8.06e-75 233
Msa1414370 MtrunA17_Chr2g0284261 39.636 275 159 3 1 274 67 335 9.85e-65 208
Msa1414370 MtrunA17_Chr1g0164831 39.847 261 147 2 10 266 69 323 5.90e-62 201
Msa1414370 MtrunA17_Chr7g0271561 38.662 269 161 2 1 265 66 334 3.74e-58 192
Msa1414370 MtrunA17_Chr8g0354121 36.422 313 186 5 1 305 72 379 5.51e-57 189
Msa1414370 MtrunA17_Chr7g0255561 37.313 268 163 2 1 265 73 338 7.50e-56 186
Msa1414370 MtrunA17_Chr7g0255581 37.313 268 163 2 1 265 73 338 7.50e-56 186
Msa1414370 MtrunA17_Chr3g0081421 37.993 279 168 4 1 276 76 352 9.31e-56 186
Msa1414370 MtrunA17_Chr6g0483401 36.496 274 164 3 1 269 69 337 3.66e-55 184
Msa1414370 MtrunA17_Chr3g0114691 36.508 315 179 6 1 298 79 389 5.79e-55 184
Msa1414370 MtrunA17_Chr3g0081511 33.951 324 197 5 1 323 76 383 7.16e-55 184
Msa1414370 MtrunA17_Chr6g0463971 38.996 259 158 0 5 263 78 336 1.27e-53 179
Msa1414370 MtrunA17_Chr3g0129591 36.842 266 167 1 6 270 71 336 1.59e-53 179
Msa1414370 MtrunA17_Chr3g0129601 38.996 259 156 2 10 267 97 354 2.47e-53 179
Msa1414370 MtrunA17_Chr3g0129571 32.753 287 188 2 6 289 73 357 3.58e-53 178
Msa1414370 MtrunA17_Chr8g0334761 34.629 283 181 2 10 291 79 358 3.29e-52 176
Msa1414370 MtrunA17_Chr3g0114731 32.822 326 207 4 1 324 77 392 7.13e-52 176
Msa1414370 MtrunA17_Chr1g0160171 37.589 282 166 2 1 275 75 353 9.86e-52 175
Msa1414370 MtrunA17_Chr1g0160111 33.223 301 192 3 1 298 66 360 3.67e-51 173
Msa1414370 MtrunA17_Chr7g0263101 35.563 284 174 3 1 278 72 352 2.53e-50 171
Msa1414370 MtrunA17_Chr3g0084091 31.579 304 175 3 18 297 6 300 5.35e-50 168
Msa1414370 MtrunA17_Chr4g0073241 35.395 291 176 4 10 296 79 361 9.81e-50 169
Msa1414370 MtrunA17_Chr8g0383731 40.435 230 134 2 41 267 104 333 1.77e-49 168
Msa1414370 MtrunA17_Chr3g0126101 35.448 268 167 3 1 268 65 326 3.03e-49 167
Msa1414370 MtrunA17_Chr1g0155761 37.589 282 160 3 5 270 84 365 3.66e-48 166
Msa1414370 MtrunA17_Chr3g0142131 36.429 280 168 2 1 270 79 358 5.38e-48 166
Msa1414370 MtrunA17_Chr5g0428881 30.612 294 186 1 3 278 79 372 3.59e-47 163
Msa1414370 MtrunA17_Chr1g0182291 36.226 265 161 4 1 263 74 332 1.46e-46 161
Msa1414370 MtrunA17_Chr5g0429001 31.227 269 183 1 3 269 12 280 2.44e-46 159
Msa1414370 MtrunA17_Chr2g0310441 33.333 264 168 2 10 269 80 339 5.70e-46 160
Msa1414370 MtrunA17_Chr1g0150151 36.398 261 162 3 4 263 75 332 3.20e-45 157
Msa1414370 MtrunA17_Chr1g0186611 34.559 272 170 4 1 269 75 341 3.77e-45 157
Msa1414370 MtrunA17_Chr1g0186601 32.143 280 182 4 1 277 75 349 3.77e-45 157
Msa1414370 MtrunA17_Chr4g0059311 32.584 267 177 2 1 267 71 334 5.41e-45 157
Msa1414370 MtrunA17_Chr1g0186641 34.848 264 166 3 1 263 72 330 5.59e-45 157
Msa1414370 MtrunA17_Chr1g0186571 33.569 283 180 5 1 280 72 349 6.92e-45 156
Msa1414370 MtrunA17_Chr5g0441761 32.830 265 170 2 5 269 77 333 7.39e-45 156
Msa1414370 MtrunA17_Chr1g0171301 33.824 272 174 4 1 269 75 343 1.48e-44 155
Msa1414370 MtrunA17_Chr3g0129581 35.448 268 168 3 6 270 71 336 1.34e-43 153
Msa1414370 MtrunA17_Chr1g0160181 30.915 317 211 5 1 315 77 387 1.48e-42 151
Msa1414370 MtrunA17_Chr1g0184221 31.469 286 169 4 1 269 75 350 2.87e-42 150
Msa1414370 MtrunA17_Chr8g0334771 31.561 301 195 2 10 310 79 368 3.43e-42 150
Msa1414370 MtrunA17_Chr1g0186561 34.909 275 168 4 1 270 75 343 4.25e-42 149
Msa1414370 MtrunA17_Chr6g0451211 32.534 292 179 4 1 280 74 359 3.81e-41 147
Msa1414370 MtrunA17_Chr8g0334751 32.500 280 169 4 10 280 80 348 5.78e-40 144
Msa1414370 MtrunA17_Chr3g0114701 33.439 314 206 3 1 313 68 379 7.06e-40 144
Msa1414370 MtrunA17_Chr5g0413961 32.714 269 166 4 1 265 73 330 9.03e-39 140
Msa1414370 MtrunA17_Chr4g0050921 58.654 104 43 0 141 244 1 104 2.74e-38 132
Msa1414370 MtrunA17_Chr5g0413941 30.800 250 168 2 21 269 86 331 4.19e-37 136
Msa1414370 MtrunA17_Chr3g0114711 30.208 288 162 4 21 272 93 377 1.20e-36 135
Msa1414370 MtrunA17_Chr5g0413951 31.349 252 152 4 21 263 86 325 1.28e-35 132
Msa1414370 MtrunA17_Chr7g0227921 29.592 294 184 5 6 283 71 357 1.43e-35 132
Msa1414370 MtrunA17_Chr6g0451251 33.704 270 168 6 1 268 73 333 3.18e-33 126
Msa1414370 MtrunA17_Chr6g0451201 33.209 268 172 4 1 268 70 330 1.12e-32 124
Msa1414370 MtrunA17_Chr5g0413921 32.184 261 168 4 8 263 69 325 1.89e-32 123
Msa1414370 MtrunA17_Chr6g0451171 30.897 301 194 7 1 297 72 362 1.88e-31 121
Msa1414370 MtrunA17_Chr6g0451261 29.918 244 167 2 1 244 71 310 2.79e-31 124
Msa1414370 MtrunA17_Chr5g0413931 31.579 247 164 3 31 275 95 338 3.21e-31 120
Msa1414370 MtrunA17_Chr5g0404811 31.602 231 151 3 50 277 1 227 6.09e-31 117
Msa1414370 MtrunA17_Chr1g0211801 35.676 185 111 2 10 191 77 256 8.29e-31 117
Msa1414370 MtrunA17_Chr4g0050911 48.855 131 61 2 17 141 6 136 3.97e-30 112
Msa1414370 MtrunA17_Chr5g0407991 31.148 305 182 7 1 280 68 369 4.17e-30 118
Msa1414370 MtrunA17_Chr6g0451191 33.333 210 130 5 56 263 1 202 6.10e-30 114
Msa1414370 MtrunA17_Chr5g0407971 29.348 276 175 5 11 272 83 352 6.54e-30 117
Msa1414370 MtrunA17_Chr5g0408031 29.936 314 188 9 6 299 73 374 3.10e-27 110
Msa1414370 MtrunA17_Chr8g0369841 26.909 275 183 4 11 272 81 350 7.34e-27 108
Msa1414370 MtrunA17_Chr5g0408001 30.370 270 166 6 11 265 82 344 1.08e-26 108
Msa1414370 MtrunA17_Chr5g0408041 30.357 280 169 7 6 265 74 347 1.67e-26 108
Msa1414370 MtrunA17_Chr2g0278031 83.636 55 9 0 1 55 73 127 5.83e-25 97.8
Msa1414370 MtrunA17_Chr3g0126091 25.188 266 188 3 1 262 73 331 5.40e-24 100
Msa1414370 MtrunA17_Chr8g0334721 37.008 127 79 1 159 284 5 131 9.32e-24 95.5
Msa1414370 MtrunA17_Chr5g0399281 28.405 257 167 5 15 263 81 328 8.81e-22 94.4
Msa1414370 MtrunA17_Chr1g0177231 45.556 90 41 2 178 265 19 102 2.76e-18 79.7
Msa1414370 MtrunA17_Chr1g0177221 29.143 175 119 3 18 191 94 264 1.49e-17 81.3
Msa1414370 MtrunA17_Chr4g0056081 25.275 273 183 5 2 263 75 337 1.73e-17 82.4
Msa1414370 MtrunA17_Chr1g0211811 44.000 75 42 0 193 267 1 75 1.87e-17 76.3
Msa1414370 MtrunA17_Chr1g0172891 52.459 61 29 0 205 265 20 80 1.89e-17 77.0
Msa1414370 MtrunA17_Chr1g0182261 33.333 138 88 4 133 267 78 214 2.07e-15 74.3
Msa1414370 MtrunA17_Chr8g0334711 37.302 126 64 2 19 138 87 203 6.14e-15 72.8
Msa1414370 MtrunA17_Chr8g0334731 35.036 137 72 3 10 138 60 187 1.85e-14 71.2
Msa1414370 MtrunA17_Chr6g0451241 36.082 97 61 1 202 297 18 114 6.04e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1414370 AT1G68170.1 47.107 242 128 0 24 265 84 325 1.00e-72 229
Msa1414370 AT1G68170.2 46.914 243 129 0 23 265 93 335 1.35e-72 229
Msa1414370 AT1G25270.1 41.812 287 154 4 2 280 62 343 9.46e-68 216
Msa1414370 AT4G01440.1 36.027 297 182 3 1 296 68 357 5.10e-57 189
Msa1414370 AT5G07050.1 39.338 272 152 4 1 263 76 343 4.80e-55 185
Msa1414370 AT3G30340.1 37.011 281 170 3 1 280 69 343 4.57e-54 181
Msa1414370 AT4G08290.1 35.974 303 188 3 1 300 71 370 6.86e-54 181
Msa1414370 AT3G18200.2 36.304 303 178 7 1 301 93 382 7.30e-53 179
Msa1414370 AT5G13670.1 36.482 307 175 6 1 301 66 358 7.57e-53 178
Msa1414370 AT1G09380.1 37.405 262 161 2 1 260 66 326 3.02e-52 177
Msa1414370 AT4G08300.1 36.742 264 165 2 1 263 69 331 1.06e-51 175
Msa1414370 AT2G37460.1 32.931 331 185 6 1 325 73 372 1.47e-51 175
Msa1414370 AT5G64700.1 37.175 269 165 1 1 265 66 334 1.45e-49 169
Msa1414370 AT3G53210.1 33.660 306 194 3 1 306 68 364 4.77e-49 168
Msa1414370 AT4G01440.3 37.551 245 148 2 1 244 68 308 4.95e-49 167
Msa1414370 AT4G01430.1 33.546 313 188 4 1 311 67 361 1.72e-48 167
Msa1414370 AT1G75500.1 38.745 271 158 4 1 265 78 346 3.42e-48 166
Msa1414370 AT1G75500.2 38.745 271 158 4 1 265 78 346 3.42e-48 166
Msa1414370 AT1G44800.1 33.546 313 189 3 1 311 69 364 4.96e-48 166
Msa1414370 AT1G21890.1 33.673 294 182 3 1 283 69 360 7.23e-48 166
Msa1414370 AT4G01440.5 34.646 254 158 3 44 296 3 249 9.14e-48 162
Msa1414370 AT4G01440.2 34.646 254 158 3 44 296 3 249 9.14e-48 162
Msa1414370 AT2G39510.1 34.868 304 183 4 1 298 66 360 1.42e-47 164
Msa1414370 AT1G11450.2 35.484 279 175 3 1 278 23 297 2.29e-47 162
Msa1414370 AT1G11450.5 35.484 279 175 3 1 278 30 304 3.32e-47 162
Msa1414370 AT1G11450.3 35.484 279 175 3 1 278 74 348 6.03e-47 162
Msa1414370 AT3G18200.1 34.848 264 159 5 39 301 1 252 6.59e-46 157
Msa1414370 AT1G11460.1 35.714 266 167 3 1 265 74 336 9.07e-46 159
Msa1414370 AT1G01070.2 33.221 298 177 4 1 282 27 318 1.00e-45 158
Msa1414370 AT3G53210.2 33.099 284 181 3 18 301 28 302 2.26e-45 157
Msa1414370 AT1G01070.1 33.221 298 177 4 1 282 74 365 4.84e-45 157
Msa1414370 AT1G43650.1 35.338 266 160 3 1 263 65 321 3.34e-44 155
Msa1414370 AT2G40900.1 31.183 279 179 2 1 274 69 339 1.34e-43 154
Msa1414370 AT4G30420.2 30.341 323 204 6 10 331 79 381 1.59e-43 154
Msa1414370 AT4G30420.1 30.341 323 204 6 10 331 69 371 1.67e-43 154
Msa1414370 AT1G11450.1 35.521 259 162 3 21 278 2 256 6.14e-43 149
Msa1414370 AT5G40240.1 33.213 277 174 5 5 276 83 353 9.35e-42 149
Msa1414370 AT5G40240.3 33.213 277 174 5 5 276 83 353 9.35e-42 149
Msa1414370 AT5G40240.2 33.213 277 174 5 5 276 97 367 1.07e-41 149
Msa1414370 AT4G28040.1 31.034 290 184 4 11 299 78 352 3.05e-41 147
Msa1414370 AT4G28040.5 31.034 290 184 4 11 299 78 352 3.05e-41 147
Msa1414370 AT4G28040.3 31.034 290 184 4 11 299 78 352 3.05e-41 147
Msa1414370 AT4G28040.4 31.034 290 184 4 11 299 78 352 3.05e-41 147
Msa1414370 AT4G28040.2 31.034 290 184 4 11 299 78 352 3.05e-41 147
Msa1414370 AT3G28050.1 29.003 331 196 7 1 326 71 367 9.32e-40 144
Msa1414370 AT3G56620.1 33.588 262 163 4 1 260 69 321 9.36e-40 144
Msa1414370 AT5G40230.1 31.359 287 177 4 5 278 84 363 4.83e-38 139
Msa1414370 AT4G01430.2 36.626 243 151 3 1 241 67 308 5.49e-38 138
Msa1414370 AT4G15540.1 30.496 282 175 3 4 278 79 346 7.91e-38 138
Msa1414370 AT4G15540.2 30.496 282 175 3 4 278 79 346 7.91e-38 138
Msa1414370 AT2G37450.2 36.842 247 148 5 19 263 64 304 2.85e-37 136
Msa1414370 AT1G11450.4 35.124 242 152 3 1 241 74 311 6.79e-37 135
Msa1414370 AT2G37450.3 36.017 236 145 3 31 265 4 234 1.59e-36 132
Msa1414370 AT1G21890.2 32.794 247 160 1 1 241 69 315 3.37e-35 131
Msa1414370 AT4G01450.2 35.606 264 163 2 1 264 68 324 4.79e-35 131
Msa1414370 AT3G28070.2 33.197 244 152 6 31 270 13 249 6.18e-35 128
Msa1414370 AT4G01440.4 37.563 197 118 2 1 196 68 260 9.81e-35 128
Msa1414370 AT3G28080.5 31.933 238 159 3 31 267 13 248 1.08e-34 128
Msa1414370 AT3G28080.7 31.933 238 159 3 31 267 13 248 1.08e-34 128
Msa1414370 AT3G28080.8 31.933 238 159 3 31 267 13 248 1.08e-34 128
Msa1414370 AT3G28080.6 31.933 238 159 3 31 267 13 248 1.08e-34 128
Msa1414370 AT3G28070.1 32.576 264 165 7 13 270 85 341 5.61e-34 128
Msa1414370 AT3G28080.1 31.933 238 159 3 31 267 102 337 1.17e-33 127
Msa1414370 AT3G28080.2 31.933 238 159 3 31 267 94 329 1.35e-33 127
Msa1414370 AT4G01450.1 34.440 241 151 2 1 241 68 301 2.27e-33 126
Msa1414370 AT3G28100.1 30.712 267 180 4 12 275 81 345 1.04e-32 124
Msa1414370 AT4G01430.3 31.276 243 148 3 71 312 1 225 2.44e-31 118
Msa1414370 AT5G40210.1 33.459 266 155 7 1 265 72 316 5.15e-31 120
Msa1414370 AT5G45370.1 28.521 284 187 3 1 281 78 348 7.15e-31 120
Msa1414370 AT1G70260.1 27.407 270 194 1 1 268 73 342 2.28e-30 119
Msa1414370 AT3G53210.3 34.637 179 115 1 1 179 68 244 2.51e-29 113
Msa1414370 AT5G45370.2 27.027 296 200 4 1 281 78 372 4.88e-29 115
Msa1414370 AT5G45370.4 27.027 296 200 4 1 281 78 372 4.88e-29 115
Msa1414370 AT4G08290.2 35.263 190 122 1 1 190 71 259 5.98e-29 113
Msa1414370 AT3G28130.5 28.571 238 167 3 31 267 15 250 1.91e-28 111
Msa1414370 AT3G28130.1 28.571 238 167 3 31 267 15 250 1.91e-28 111
Msa1414370 AT3G30340.2 35.938 192 119 2 1 191 69 257 1.98e-28 111
Msa1414370 AT3G28130.2 27.935 247 175 3 31 276 101 345 1.91e-27 110
Msa1414370 AT3G45870.1 29.183 257 164 5 13 258 85 334 2.28e-27 110
Msa1414370 AT5G45370.6 26.394 269 182 4 28 281 3 270 6.32e-27 107
Msa1414370 AT5G45370.5 26.394 269 182 4 28 281 3 270 6.32e-27 107
Msa1414370 AT3G28070.5 31.507 219 139 6 56 270 1 212 7.12e-27 106
Msa1414370 AT4G01450.4 35.079 191 117 2 1 191 68 251 9.00e-27 106
Msa1414370 AT2G37450.1 33.971 209 132 3 56 263 62 265 1.65e-26 107
Msa1414370 AT5G64700.2 33.333 195 126 1 1 191 66 260 2.22e-26 105
Msa1414370 AT4G19185.2 28.679 265 173 5 13 265 16 276 3.94e-26 106
Msa1414370 AT3G28080.9 30.047 213 146 3 56 267 1 211 4.26e-26 104
Msa1414370 AT4G19185.1 28.679 265 173 5 13 265 94 354 1.04e-25 106
Msa1414370 AT1G60050.1 26.855 283 200 4 6 283 79 359 2.81e-24 102
Msa1414370 AT5G47470.2 29.084 251 165 3 16 263 132 372 5.80e-23 98.6
Msa1414370 AT4G01450.3 36.250 160 95 2 1 160 68 220 6.03e-23 95.9
Msa1414370 AT3G28070.3 30.085 236 154 6 12 241 84 314 6.33e-23 97.4
Msa1414370 AT5G47470.3 29.084 251 165 3 16 263 132 372 8.15e-23 98.2
Msa1414370 AT4G24980.1 28.000 250 122 5 19 263 42 238 9.04e-23 96.3
Msa1414370 AT5G47470.1 30.556 252 160 5 16 263 104 344 1.10e-22 97.4
Msa1414370 AT1G43650.2 33.161 193 117 3 1 190 65 248 7.50e-21 90.9
Msa1414370 AT3G28130.3 26.761 213 153 3 56 267 1 211 1.06e-20 89.7
Msa1414370 AT3G45870.8 27.500 240 156 5 13 241 85 317 4.19e-20 89.7
Msa1414370 AT3G45870.5 26.891 238 156 5 32 258 29 259 3.31e-19 87.0
Msa1414370 AT5G45370.3 24.583 240 165 4 57 281 74 312 6.13e-19 86.3
Msa1414370 AT4G16620.1 24.567 289 182 7 11 280 81 352 2.62e-17 82.0
Msa1414370 AT4G16620.4 24.082 245 159 5 31 263 4 233 4.52e-16 77.4
Msa1414370 AT4G16620.2 24.082 245 159 5 31 263 4 233 4.52e-16 77.4
Msa1414370 AT3G45870.2 27.338 139 100 1 120 258 46 183 4.91e-14 70.9
Msa1414370 AT3G45870.9 28.947 190 117 5 13 191 85 267 5.20e-14 71.6
Msa1414370 AT3G28080.4 36.486 74 47 0 194 267 121 194 1.68e-12 66.2
Msa1414370 AT3G45870.6 24.887 221 148 5 32 241 29 242 3.17e-12 66.2
Msa1414370 AT3G45870.7 24.887 221 148 5 32 241 29 242 3.17e-12 66.2
Msa1414370 AT3G28080.3 36.486 74 47 0 194 267 210 283 4.20e-12 66.2
Msa1414370 AT3G28100.3 26.667 180 128 3 12 188 81 259 1.50e-11 64.3

Find 95 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGGATGTCACGTTCATTT+TGG 0.185990 tig0024111:-68665 Msa1414370:intergenic
TGCACTGTGGCTTATTATTC+AGG 0.189563 tig0024111:+67308 Msa1414370:CDS
GATGATGCAAAAGATTTAAA+TGG 0.200514 tig0024111:-67203 Msa1414370:intergenic
TCCACTGCTAATACCATTTC+GGG 0.219336 tig0024111:+67252 Msa1414370:CDS
GGATTTGAGTCAGTGGAAAT+TGG 0.225887 tig0024111:+67529 Msa1414370:CDS
TTTAGTTGGAGAATCAAAAT+AGG 0.232953 tig0024111:-68716 Msa1414370:intergenic
CTCCACTGCTAATACCATTT+CGG 0.255958 tig0024111:+67251 Msa1414370:CDS
GTGCAGGGTATAGTGGTTTC+AGG 0.274984 tig0024111:+67997 Msa1414370:intron
GCCACCATGAGAAGCATTAA+AGG 0.303653 tig0024111:-68087 Msa1414370:intergenic
TGCATGTAATGCCTAAAATA+TGG 0.321738 tig0024111:+68596 Msa1414370:three_prime_UTR
GAAGTGCAAAATGAAGAAAA+AGG 0.322992 tig0024111:+68764 Msa1414370:three_prime_UTR
AATGCTTCTCATGGTGGCTT+TGG 0.326565 tig0024111:+68092 Msa1414370:CDS
CTTCTCATGGTGGCTTTGGC+TGG 0.336230 tig0024111:+68096 Msa1414370:CDS
TTTATCATGGCCGTTTCCTT+AGG 0.340185 tig0024111:+66635 Msa1414370:CDS
GCAGGGAAGGCAAAGATATT+AGG 0.341417 tig0024111:+67108 Msa1414370:CDS
GTGTAGTTTCTCATTCAAAA+TGG 0.353109 tig0024111:-68124 Msa1414370:intergenic
GACCTCACAACTATTTCAAC+TGG 0.354002 tig0024111:-68423 Msa1414370:intergenic
TTAGTTGGAGAATCAAAATA+GGG 0.368704 tig0024111:-68715 Msa1414370:intergenic
TAAGGAAACGGCCATGATAA+AGG 0.377584 tig0024111:-66633 Msa1414370:intergenic
GATTTGAGTCAGTGGAAATT+GGG 0.381331 tig0024111:+67530 Msa1414370:CDS
TAATCAAGGTAATACTTTAC+AGG 0.391706 tig0024111:+68479 Msa1414370:CDS
AGGGTCCGCTGGTAGCATTT+TGG 0.392087 tig0024111:-68696 Msa1414370:intergenic
GTGGCTTATATGCGGTTGTA+TGG 0.403530 tig0024111:+68334 Msa1414370:CDS
AAGATATTAGGTACACTAAC+AGG 0.409574 tig0024111:+67120 Msa1414370:CDS
TAAAGGTTACAGCTGGTATA+AGG 0.410418 tig0024111:-66616 Msa1414370:intergenic
TAAAGGTGTTGAAATTAAGA+TGG 0.412574 tig0024111:+67173 Msa1414370:CDS
TTGAATTGTGCAGGGTATAG+TGG 0.415256 tig0024111:+67990 Msa1414370:intron
TTCGGGTTCTATGTGTGCCT+TGG 0.416704 tig0024111:+67269 Msa1414370:CDS
TAATACTTTACAGGTGGTTA+AGG 0.419065 tig0024111:+68488 Msa1414370:CDS
CTTTCAAGAATGAAAGCAAT+TGG 0.430427 tig0024111:-64177 Msa1414370:intergenic
ATGGTATCGACATTCGTTAA+AGG 0.431567 tig0024111:+67156 Msa1414370:CDS
CCACCATGAGAAGCATTAAA+GGG 0.434152 tig0024111:-68086 Msa1414370:intergenic
TTAGGTACACTAACAGGAAT+TGG 0.435923 tig0024111:+67126 Msa1414370:CDS
TACCTTGATTATTGTTGTTG+TGG 0.442004 tig0024111:-68467 Msa1414370:intergenic
TTGCATCATCAAAATGGTGT+TGG 0.456326 tig0024111:+67216 Msa1414370:CDS
TACCCCTTTAATGCTTCTCA+TGG 0.459947 tig0024111:+68083 Msa1414370:CDS
TAATTGAGTGAACTCTTAGC+TGG 0.461261 tig0024111:+68814 Msa1414370:three_prime_UTR
CAATTGCTTTCATTCTTGAA+AGG 0.462583 tig0024111:+64178 Msa1414370:five_prime_UTR
TGAGTCAGTGGAAATTGGGT+TGG 0.467607 tig0024111:+67534 Msa1414370:CDS
TTATCATGGCCGTTTCCTTA+GGG 0.467781 tig0024111:+66636 Msa1414370:CDS
CAATGGTAGCTGTAATTTCA+TGG 0.477017 tig0024111:+68022 Msa1414370:CDS
CCCTTTAATGCTTCTCATGG+TGG 0.478738 tig0024111:+68086 Msa1414370:CDS
ACCAGCTGTAACCTTTATCA+TGG 0.479465 tig0024111:+66622 Msa1414370:CDS
TTAAATTTGAGAACAAAAGC+AGG 0.485502 tig0024111:+67090 Msa1414370:CDS
GGCACACATAGAACCCGAAA+TGG 0.496190 tig0024111:-67265 Msa1414370:intergenic
ATGTTGCTGAAGTTAAAGTC+AGG 0.496408 tig0024111:-66574 Msa1414370:intergenic
AAAGGTGTTGAAATTAAGAT+GGG 0.500659 tig0024111:+67174 Msa1414370:CDS
TGCTTGCTCTATGCTTTGAA+AGG 0.500838 tig0024111:+67507 Msa1414370:CDS
AACGTGACATCCTTCTAGAT+TGG 0.501879 tig0024111:+68673 Msa1414370:three_prime_UTR
AGAAGAGGGCAAAGATGACT+TGG 0.516252 tig0024111:+64540 Msa1414370:exon
GCTTGCTCTATGCTTTGAAA+GGG 0.517954 tig0024111:+67508 Msa1414370:CDS
AACCACAACAACAATAATCA+AGG 0.522875 tig0024111:+68465 Msa1414370:CDS
GGAGCGGTGTTGATTGTATG+TGG 0.523594 tig0024111:+68315 Msa1414370:CDS
TGGCTTATATGCGGTTGTAT+GGG 0.524020 tig0024111:+68335 Msa1414370:CDS
AACAGGAATTGGTGGGGCAA+TGG 0.524744 tig0024111:+67137 Msa1414370:CDS
TAATACTTACCCTAAGGAAA+CGG 0.528146 tig0024111:-66645 Msa1414370:intergenic
ACTACTAACCGTTGCTTATG+CGG 0.544164 tig0024111:+67565 Msa1414370:CDS
GCTGTACTTGAGTAATGAGT+AGG 0.552365 tig0024111:-67449 Msa1414370:intergenic
GCAAGCAAATATACCTTCCA+AGG 0.555395 tig0024111:-68146 Msa1414370:intergenic
ATGAGAAACTACACCTTGGA+AGG 0.557923 tig0024111:+68133 Msa1414370:CDS
TCAACTGGGTCAAATTCATG+TGG 0.559483 tig0024111:-68408 Msa1414370:intergenic
TTTGAGAACAAAAGCAGGGA+AGG 0.570188 tig0024111:+67095 Msa1414370:CDS
GTACACTAACAGGAATTGGT+GGG 0.571060 tig0024111:+67130 Msa1414370:CDS
TTGAAAGGGATTTGAGTCAG+TGG 0.574813 tig0024111:+67522 Msa1414370:CDS
CAACTGGGTCAAATTCATGT+GGG 0.581445 tig0024111:-68407 Msa1414370:intergenic
AGCAACATTTGCATCCGCAA+TGG 0.581666 tig0024111:+66589 Msa1414370:CDS
GGTACACTAACAGGAATTGG+TGG 0.583339 tig0024111:+67129 Msa1414370:CDS
GCCATGATAAAGGTTACAGC+TGG 0.584742 tig0024111:-66623 Msa1414370:intergenic
AAGCAGTTGCAATTACAAAA+CGG 0.587659 tig0024111:-64146 Msa1414370:intergenic
TGGTATAAGGTTGGCCATTG+CGG 0.589106 tig0024111:-66603 Msa1414370:intergenic
CTGTACTTGAGTAATGAGTA+GGG 0.589429 tig0024111:-67448 Msa1414370:intergenic
TAAATTTGAGAACAAAAGCA+GGG 0.592408 tig0024111:+67091 Msa1414370:CDS
TGACTCTGTTATATATGTCA+TGG 0.594080 tig0024111:+68840 Msa1414370:three_prime_UTR
ACCCGAAATGGTATTAGCAG+TGG 0.594444 tig0024111:-67253 Msa1414370:intergenic
AGAATCAAAATAGGGTCCGC+TGG 0.594534 tig0024111:-68707 Msa1414370:intergenic
TATAGTGGTTTCAGGAGCAA+TGG 0.595242 tig0024111:+68005 Msa1414370:CDS
GGTTACAGCTGGTATAAGGT+TGG 0.597282 tig0024111:-66612 Msa1414370:intergenic
TGTTGCTGAAGTTAAAGTCA+GGG 0.602599 tig0024111:-66573 Msa1414370:intergenic
ATAAGAGATGGCACTAGCCA+AGG 0.602961 tig0024111:-67286 Msa1414370:intergenic
AGTTGCAATTACAAAACGGT+AGG 0.619165 tig0024111:-64142 Msa1414370:intergenic
AAGCCACAGTGCATAAGAGA+TGG 0.619720 tig0024111:-67298 Msa1414370:intergenic
AAATTTCAGCATTATTGGAG+CGG 0.626677 tig0024111:+68299 Msa1414370:intron
TTGAATGAGAAACTACACCT+TGG 0.634029 tig0024111:+68129 Msa1414370:CDS
ACCCAGTTGAAATAGTTGTG+AGG 0.635875 tig0024111:+68421 Msa1414370:CDS
GGCTTATATGCGGTTGTATG+GGG 0.639210 tig0024111:+68336 Msa1414370:CDS
ACCTCACAACTATTTCAACT+GGG 0.639561 tig0024111:-68422 Msa1414370:intergenic
TCATGGTGTGTACACATGAG+AGG 0.646320 tig0024111:+68039 Msa1414370:CDS
TCAAGGTAATACTTTACAGG+TGG 0.650018 tig0024111:+68482 Msa1414370:CDS
AAAGCATAGAGCAAGCACAA+TGG 0.656633 tig0024111:-67501 Msa1414370:intergenic
CACCATGAGAAGCATTAAAG+GGG 0.657738 tig0024111:-68085 Msa1414370:intergenic
TACACTAACAGGAATTGGTG+GGG 0.658239 tig0024111:+67131 Msa1414370:CDS
GATTGTATGTGGCTTATATG+CGG 0.658345 tig0024111:+68326 Msa1414370:CDS
CTAACATACCGCATAAGCAA+CGG 0.664599 tig0024111:-67573 Msa1414370:intergenic
GTGCCATCTCTTATGCACTG+TGG 0.699959 tig0024111:+67295 Msa1414370:CDS
ATTGGCCAAAATGCTACCAG+CGG 0.703691 tig0024111:+68691 Msa1414370:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAATGTTAAAATATAATAT+TGG + tig0024111:66320-66339 Msa1414370:intron 10.0%
!! GAATGTTAAAATATAATATT+GGG + tig0024111:66321-66340 Msa1414370:intron 10.0%
!!! TTTTTATTATTTTTTCATGT+AGG + tig0024111:66519-66538 Msa1414370:intron 10.0%
!!! TTTTATTATTTTTTCATGTA+GGG + tig0024111:66520-66539 Msa1414370:intron 10.0%
!! AAAGATTAAACTATAAAATT+TGG + tig0024111:66745-66764 Msa1414370:intron 10.0%
!! TAAATAAATAAAAAATCAGT+TGG - tig0024111:67392-67411 Msa1414370:intergenic 10.0%
!!! TTATTACACTATTTTTATAA+TGG - tig0024111:67903-67922 Msa1414370:intergenic 10.0%
!! TTTAGTTAATGAGTTAAAAA+TGG - tig0024111:66436-66455 Msa1414370:intergenic 15.0%
!!! TTTATTATTTTTTCATGTAG+GGG + tig0024111:66521-66540 Msa1414370:intron 15.0%
!! TTCCTTCAAAAAAAAAAAAT+AGG - tig0024111:66772-66791 Msa1414370:intergenic 15.0%
!! TGAAAAATTAAAAGTTACAT+TGG - tig0024111:67059-67078 Msa1414370:intergenic 15.0%
!!! TAACTTTTAATTTTTCAGTA+TGG + tig0024111:67062-67081 Msa1414370:intron 15.0%
!!! TAATTTTCATTGATTGATAT+TGG - tig0024111:67362-67381 Msa1414370:intergenic 15.0%
!! TTATATCCAATGATTAATTA+AGG + tig0024111:67623-67642 Msa1414370:intron 15.0%
!! TTAAATCCTTAATTAATCAT+TGG - tig0024111:67632-67651 Msa1414370:intergenic 15.0%
!! AAAAAAAAACTATAATTGTG+CGG - tig0024111:68995-69014 Msa1414370:intergenic 15.0%
!!! ATTATAGTTTTTTTTTCGTA+TGG + tig0024111:68999-69018 Msa1414370:three_prime_UTR 15.0%
!! AATGGAGTATAAATAATTGA+TGG + tig0024111:64242-64261 Msa1414370:intron 20.0%
!! TTTCATACATAATATAGCTT+AGG + tig0024111:64388-64407 Msa1414370:intron 20.0%
!!! ACAAGCATATATATTTTAAG+TGG + tig0024111:64841-64860 Msa1414370:intron 20.0%
!!! TTTGGTATATATTTCCATTT+TGG - tig0024111:64958-64977 Msa1414370:intergenic 20.0%
!!! TAATTTTAACAAAAGCTTGT+TGG - tig0024111:66209-66228 Msa1414370:intergenic 20.0%
!! TTGGGAATTATATTTGTTTA+AGG + tig0024111:66339-66358 Msa1414370:intron 20.0%
!! TGTAAACTATGAAATATGAA+TGG - tig0024111:66488-66507 Msa1414370:intergenic 20.0%
!! AGTAACTCGTAAATTATAAT+TGG - tig0024111:66687-66706 Msa1414370:intergenic 20.0%
!!! GACCTATTTTTTTTTTTTGA+AGG + tig0024111:66767-66786 Msa1414370:intron 20.0%
!! AAGAAAGAGAGTTAATATAT+AGG - tig0024111:66802-66821 Msa1414370:intergenic 20.0%
!!! ATTACGTAATAATTTGCAAA+GGG - tig0024111:66846-66865 Msa1414370:intergenic 20.0%
!!! TATTACGTAATAATTTGCAA+AGG - tig0024111:66847-66866 Msa1414370:intergenic 20.0%
!!! ATGATGTTATTTTCTTAAGT+TGG + tig0024111:67708-67727 Msa1414370:intron 20.0%
!!! ACTTCCTATATTTTTTTTTG+TGG + tig0024111:67833-67852 Msa1414370:intron 20.0%
!! GAAATACTAAGTTGTTTAAT+TGG + tig0024111:68206-68225 Msa1414370:intron 20.0%
!! TATTTGACCTCAAAAAATTA+GGG - tig0024111:68233-68252 Msa1414370:intergenic 20.0%
!! ATATTTGACCTCAAAAAATT+AGG - tig0024111:68234-68253 Msa1414370:intergenic 20.0%
!!! AATGCTGAAATTTTTAACAA+AGG - tig0024111:68292-68311 Msa1414370:intergenic 20.0%
!! GTTAAAAATTTCAGCATTAT+TGG + tig0024111:68294-68313 Msa1414370:intron 20.0%
!!! AATTTGATACTCCATATTTT+AGG - tig0024111:68610-68629 Msa1414370:intergenic 20.0%
!!! AAGCTCTAATATATTTTAGT+TGG - tig0024111:68733-68752 Msa1414370:intergenic 20.0%
! ATGTGATTTACTGTCATTAT+TGG - tig0024111:64436-64455 Msa1414370:intergenic 25.0%
! TATAGTTTGAGTGATATTCT+AGG - tig0024111:65011-65030 Msa1414370:intergenic 25.0%
!!! TTCTTTTTTCAGTTTTTGCT+GGG - tig0024111:65052-65071 Msa1414370:intergenic 25.0%
!!! TTTCTTTTTTCAGTTTTTGC+TGG - tig0024111:65053-65072 Msa1414370:intergenic 25.0%
!!! ATGTTATTTCTGATGTATCT+AGG - tig0024111:65205-65224 Msa1414370:intergenic 25.0%
! CAGAAATAACATTGTTGAAA+AGG + tig0024111:65213-65232 Msa1414370:intron 25.0%
! AAATAACATTGTTGAAAAGG+TGG + tig0024111:65216-65235 Msa1414370:intron 25.0%
! GTTCGTTTCTACAATTAATT+TGG - tig0024111:65280-65299 Msa1414370:intergenic 25.0%
! ATAAACTAAACCAAATGATG+AGG + tig0024111:65329-65348 Msa1414370:intron 25.0%
! TAATAATGTACCTCATCATT+TGG - tig0024111:65342-65361 Msa1414370:intergenic 25.0%
! ACATCAACTCAAAAATAACA+AGG + tig0024111:66242-66261 Msa1414370:intron 25.0%
! CATCAACTCAAAAATAACAA+GGG + tig0024111:66243-66262 Msa1414370:intron 25.0%
! TTAAATTTGAGAACAAAAGC+AGG + tig0024111:67090-67109 Msa1414370:CDS 25.0%
! TAAATTTGAGAACAAAAGCA+GGG + tig0024111:67091-67110 Msa1414370:CDS 25.0%
!!! TAAAGGTGTTGAAATTAAGA+TGG + tig0024111:67173-67192 Msa1414370:CDS 25.0%
!!! AAAGGTGTTGAAATTAAGAT+GGG + tig0024111:67174-67193 Msa1414370:CDS 25.0%
! GATGATGCAAAAGATTTAAA+TGG - tig0024111:67206-67225 Msa1414370:intergenic 25.0%
!! AATCTTTTGCATCATCAAAA+TGG + tig0024111:67210-67229 Msa1414370:CDS 25.0%
! GATATTTGTCATGATTTGAT+TGG + tig0024111:67751-67770 Msa1414370:intron 25.0%
!!! TCCTATATTTTTTTTTGTGG+TGG + tig0024111:67836-67855 Msa1414370:intron 25.0%
! AGAAAATCATGTTTAGCTAT+TGG + tig0024111:67922-67941 Msa1414370:intron 25.0%
! TTGATTATTAATTCCACATG+AGG + tig0024111:67948-67967 Msa1414370:intron 25.0%
! TAATCAAGGTAATACTTTAC+AGG + tig0024111:68479-68498 Msa1414370:CDS 25.0%
! TTAGTTGGAGAATCAAAATA+GGG - tig0024111:68718-68737 Msa1414370:intergenic 25.0%
! TTTAGTTGGAGAATCAAAAT+AGG - tig0024111:68719-68738 Msa1414370:intergenic 25.0%
! AAGTGCAAAATGAAGAAAAA+GGG + tig0024111:68765-68784 Msa1414370:three_prime_UTR 25.0%
AAGCAGTTGCAATTACAAAA+CGG - tig0024111:64149-64168 None:intergenic 30.0%
CTTTCAAGAATGAAAGCAAT+TGG - tig0024111:64180-64199 None:intergenic 30.0%
CAATTGCTTTCATTCTTGAA+AGG + tig0024111:64178-64197 Msa1414370:five_prime_UTR 30.0%
TTCACTCTTCTTATGATCAA+TGG + tig0024111:64224-64243 Msa1414370:intron 30.0%
CATAATATAGCTTAGGAAAG+TGG + tig0024111:64395-64414 Msa1414370:intron 30.0%
ATTCTGTTCTAACTTCAAGT+GGG - tig0024111:64487-64506 Msa1414370:intergenic 30.0%
!!! CTGTTTCAGTCATTTTTATG+CGG + tig0024111:64569-64588 Msa1414370:CDS 30.0%
!! TCATTTTTATGCGGTTTGTT+TGG + tig0024111:64578-64597 Msa1414370:CDS 30.0%
!! CATTTTTATGCGGTTTGTTT+GGG + tig0024111:64579-64598 Msa1414370:CDS 30.0%
CTTCATGCAAACGATATTTA+AGG - tig0024111:64642-64661 Msa1414370:intergenic 30.0%
! TTTGCATGAAGATTTTCTTC+TGG + tig0024111:64651-64670 Msa1414370:intron 30.0%
TTCAAGTACAAATGTAGTAG+TGG + tig0024111:64704-64723 Msa1414370:intron 30.0%
GCACTAGAAATACAAATCAA+TGG - tig0024111:64787-64806 Msa1414370:intergenic 30.0%
TGAAAAGTGGACGTAAATAT+AGG - tig0024111:64809-64828 Msa1414370:intergenic 30.0%
TTTGTTGAAGTCTTGAAAAG+TGG - tig0024111:64822-64841 Msa1414370:intergenic 30.0%
TCAAACTCCGTATAAAATGT+TGG + tig0024111:64878-64897 Msa1414370:intron 30.0%
CAAACTCCGTATAAAATGTT+GGG + tig0024111:64879-64898 Msa1414370:intron 30.0%
! GCATTTCCCAACATTTTATA+CGG - tig0024111:64888-64907 Msa1414370:intergenic 30.0%
! TTTTTCTGAACAAGCCAAAA+TGG + tig0024111:64941-64960 Msa1414370:intron 30.0%
TGAAAAAAGAAAACCTAGTG+TGG + tig0024111:65061-65080 Msa1414370:intron 30.0%
!!! AAAAAGGCTATTTTTGTCTG+TGG - tig0024111:65137-65156 Msa1414370:intergenic 30.0%
! AATTTGGCTTCTTTCTGTTT+GGG - tig0024111:65264-65283 Msa1414370:intergenic 30.0%
! TAATTTGGCTTCTTTCTGTT+TGG - tig0024111:65265-65284 Msa1414370:intergenic 30.0%
! GTTTAGTTTATGCATATGTC+AGG - tig0024111:65320-65339 Msa1414370:intergenic 30.0%
AAAGTAAATCTGGCATTTAG+AGG - tig0024111:65506-65525 Msa1414370:intergenic 30.0%
TAAATGTGTCTATCTTTGCT+TGG - tig0024111:65556-65575 Msa1414370:intergenic 30.0%
TCCTAATGTTTCAGATGTTT+GGG - tig0024111:65699-65718 Msa1414370:intergenic 30.0%
TTCCTAATGTTTCAGATGTT+TGG - tig0024111:65700-65719 Msa1414370:intergenic 30.0%
!!! TTTTAACAAAAGCTTGTTGG+CGG - tig0024111:66206-66225 Msa1414370:intergenic 30.0%
!!! GTTATTTTTGAGTTGATGTC+TGG - tig0024111:66241-66260 Msa1414370:intergenic 30.0%
!! AATATGTGCTCTGAAAAGTT+GGG - tig0024111:66293-66312 Msa1414370:intergenic 30.0%
!! TAATATGTGCTCTGAAAAGT+TGG - tig0024111:66294-66313 Msa1414370:intergenic 30.0%
TAATACTTACCCTAAGGAAA+CGG - tig0024111:66648-66667 Msa1414370:intergenic 30.0%
AAGATATTAGGTACACTAAC+AGG + tig0024111:67120-67139 Msa1414370:CDS 30.0%
!!! TACAGCGTTGATATCTTTTT+GGG + tig0024111:67466-67485 Msa1414370:CDS 30.0%
GCCACCACAAAAAAAAATAT+AGG - tig0024111:67840-67859 Msa1414370:intergenic 30.0%
TGCATAATATATGCAACGTT+CGG - tig0024111:67876-67895 Msa1414370:intergenic 30.0%
CATGTAAATTGAATTGTGCA+GGG + tig0024111:67982-68001 Msa1414370:intron 30.0%
GTGTAGTTTCTCATTCAAAA+TGG - tig0024111:68127-68146 Msa1414370:intergenic 30.0%
!!! AATTGGACCCTAATTTTTTG+AGG + tig0024111:68223-68242 Msa1414370:intron 30.0%
AAATTTCAGCATTATTGGAG+CGG + tig0024111:68299-68318 Msa1414370:intron 30.0%
!!! AATTCATGTGGGTTTTTTGA+TGG - tig0024111:68399-68418 Msa1414370:intergenic 30.0%
AACCACAACAACAATAATCA+AGG + tig0024111:68465-68484 Msa1414370:CDS 30.0%
! TACCTTGATTATTGTTGTTG+TGG - tig0024111:68470-68489 Msa1414370:intergenic 30.0%
TAATACTTTACAGGTGGTTA+AGG + tig0024111:68488-68507 Msa1414370:CDS 30.0%
GTAGAAAGTCAAGAAAAATG+AGG + tig0024111:68558-68577 Msa1414370:CDS 30.0%
AAAGTCAAGAAAAATGAGGA+AGG + tig0024111:68562-68581 Msa1414370:exon 30.0%
AAGTCAAGAAAAATGAGGAA+GGG + tig0024111:68563-68582 Msa1414370:exon 30.0%
TGCATGTAATGCCTAAAATA+TGG + tig0024111:68596-68615 Msa1414370:three_prime_UTR 30.0%
GAAGTGCAAAATGAAGAAAA+AGG + tig0024111:68764-68783 Msa1414370:three_prime_UTR 30.0%
TGACTCTGTTATATATGTCA+TGG + tig0024111:68840-68859 Msa1414370:three_prime_UTR 30.0%
TTCTGTTCTAACTTCAAGTG+GGG - tig0024111:64486-64505 Msa1414370:intergenic 35.0%
CATTCTGTTCTAACTTCAAG+TGG - tig0024111:64488-64507 Msa1414370:intergenic 35.0%
! GCTTTTGTTAATTTTGCTGC+AGG + tig0024111:64516-64535 Msa1414370:intron 35.0%
CACACATGCTTTATAGTACT+TGG - tig0024111:64752-64771 Msa1414370:intergenic 35.0%
TTGGGAGATACTACTTTCTT+TGG - tig0024111:64976-64995 Msa1414370:intergenic 35.0%
!! TTCTTTCTGTTTGGGTTTTG+TGG - tig0024111:65256-65275 Msa1414370:intergenic 35.0%
TAGTTTATGCATATGTCAGG+TGG - tig0024111:65317-65336 Msa1414370:intergenic 35.0%
!! ATTTAGAGGTGTTCTTCAGT+CGG - tig0024111:65492-65511 Msa1414370:intergenic 35.0%
AATGCCAGATTTACTTTCGT+AGG + tig0024111:65509-65528 Msa1414370:intron 35.0%
GTTACCTACGAAAGTAAATC+TGG - tig0024111:65516-65535 Msa1414370:intergenic 35.0%
TAGGTAACCTATTCCGTAAA+AGG + tig0024111:65528-65547 Msa1414370:intron 35.0%
! ACCCAAACATCTGAAACATT+AGG + tig0024111:65695-65714 Msa1414370:intron 35.0%
GAATCTACTAGATGAGTGTA+GGG - tig0024111:65747-65766 Msa1414370:intergenic 35.0%
AGAATCTACTAGATGAGTGT+AGG - tig0024111:65748-65767 Msa1414370:intergenic 35.0%
TCTCAGCCAACTCAAATAAA+CGG + tig0024111:65861-65880 Msa1414370:intron 35.0%
! TTTTCCCCGTTTATTTGAGT+TGG - tig0024111:65870-65889 Msa1414370:intergenic 35.0%
! TTTTGGTCTCATAGATGGTT+GGG - tig0024111:65914-65933 Msa1414370:intergenic 35.0%
TTGTGACAATGTAGTGAGAA+AGG - tig0024111:65960-65979 Msa1414370:intergenic 35.0%
CTTTCGTTTCTTGTATGTGT+TGG - tig0024111:66144-66163 Msa1414370:intergenic 35.0%
!! TTTAACAAAAGCTTGTTGGC+GGG - tig0024111:66205-66224 Msa1414370:intergenic 35.0%
TGTTGCTGAAGTTAAAGTCA+GGG - tig0024111:66576-66595 Msa1414370:intergenic 35.0%
ATGTTGCTGAAGTTAAAGTC+AGG - tig0024111:66577-66596 Msa1414370:intergenic 35.0%
TAAAGGTTACAGCTGGTATA+AGG - tig0024111:66619-66638 Msa1414370:intergenic 35.0%
GACACTTAATACTTACCCTA+AGG - tig0024111:66654-66673 Msa1414370:intergenic 35.0%
TTAGGTACACTAACAGGAAT+TGG + tig0024111:67126-67145 Msa1414370:CDS 35.0%
!! ATGGTATCGACATTCGTTAA+AGG + tig0024111:67156-67175 Msa1414370:CDS 35.0%
TTGCATCATCAAAATGGTGT+TGG + tig0024111:67216-67235 Msa1414370:CDS 35.0%
CTGTACTTGAGTAATGAGTA+GGG - tig0024111:67451-67470 Msa1414370:intergenic 35.0%
!!! GTACAGCGTTGATATCTTTT+TGG + tig0024111:67465-67484 Msa1414370:CDS 35.0%
GATTTGAGTCAGTGGAAATT+GGG + tig0024111:67530-67549 Msa1414370:CDS 35.0%
ACATCATCGAGTGATTTGAT+TGG - tig0024111:67695-67714 Msa1414370:intergenic 35.0%
CATAATATATGCAACGTTCG+GGG - tig0024111:67874-67893 Msa1414370:intergenic 35.0%
GCATAATATATGCAACGTTC+GGG - tig0024111:67875-67894 Msa1414370:intergenic 35.0%
CCTGCACAATTCAATTTACA+TGG - tig0024111:67984-68003 Msa1414370:intergenic 35.0%
CCATGTAAATTGAATTGTGC+AGG + tig0024111:67981-68000 Msa1414370:intron 35.0%
CAATGGTAGCTGTAATTTCA+TGG + tig0024111:68022-68041 Msa1414370:CDS 35.0%
GTAAAAACTGAGGCAAACAA+TGG - tig0024111:68066-68085 Msa1414370:intergenic 35.0%
CATTAAAGGGGTAAAAACTG+AGG - tig0024111:68076-68095 Msa1414370:intergenic 35.0%
TTGAATGAGAAACTACACCT+TGG + tig0024111:68129-68148 Msa1414370:CDS 35.0%
GATTGTATGTGGCTTATATG+CGG + tig0024111:68326-68345 Msa1414370:CDS 35.0%
ACCTCACAACTATTTCAACT+GGG - tig0024111:68425-68444 Msa1414370:intergenic 35.0%
TCAAGGTAATACTTTACAGG+TGG + tig0024111:68482-68501 Msa1414370:CDS 35.0%
AGTCAAGAAAAATGAGGAAG+GGG + tig0024111:68564-68583 Msa1414370:exon 35.0%
! TTCATTTTGGGCAAACATGT+AGG - tig0024111:68655-68674 Msa1414370:intergenic 35.0%
! AAGGATGTCACGTTCATTTT+GGG - tig0024111:68667-68686 Msa1414370:intergenic 35.0%
TAATTGAGTGAACTCTTAGC+TGG + tig0024111:68814-68833 Msa1414370:three_prime_UTR 35.0%
! AATTTTGCTGCAGGAAGAAG+AGG + tig0024111:64525-64544 Msa1414370:intron 40.0%
! ATTTTGCTGCAGGAAGAAGA+GGG + tig0024111:64526-64545 Msa1414370:intron 40.0%
AGTACTTGGACAGCACAATT+CGG - tig0024111:64738-64757 Msa1414370:intergenic 40.0%
CCAATTCCTAGACAATCCAA+CGG + tig0024111:65089-65108 Msa1414370:intron 40.0%
CAATTCCTAGACAATCCAAC+GGG + tig0024111:65090-65109 Msa1414370:intron 40.0%
! TTTTTGTCTGTGGTACTCAG+AGG - tig0024111:65127-65146 Msa1414370:intergenic 40.0%
TTAAATCTTTGTCCCTAGCG+TGG - tig0024111:65169-65188 Msa1414370:intergenic 40.0%
TTTATGCATATGTCAGGTGG+TGG - tig0024111:65314-65333 Msa1414370:intergenic 40.0%
TAGGGCACATAATGAACAAG+TGG + tig0024111:65420-65439 Msa1414370:intron 40.0%
ATGCTCATCTTTGCGTAACA+GGG - tig0024111:65469-65488 Msa1414370:intergenic 40.0%
ATAGCTCTCTAGATCTTGTG+TGG - tig0024111:65595-65614 Msa1414370:intergenic 40.0%
AGATCTAGAGAGCTATCCAA+AGG + tig0024111:65599-65618 Msa1414370:intron 40.0%
ATGTTTCAGATGTTTGGGTG+TGG - tig0024111:65694-65713 Msa1414370:intergenic 40.0%
!! GTTTCTAGTATGTTCTCTCG+TGG - tig0024111:65827-65846 Msa1414370:intergenic 40.0%
! TGAGTTGGCTGAGAACAAAT+TGG - tig0024111:65855-65874 Msa1414370:intergenic 40.0%
CTCAGCCAACTCAAATAAAC+GGG + tig0024111:65862-65881 Msa1414370:intron 40.0%
TCAGCCAACTCAAATAAACG+GGG + tig0024111:65863-65882 Msa1414370:intron 40.0%
!! GTTTTGGTCTCATAGATGGT+TGG - tig0024111:65915-65934 Msa1414370:intergenic 40.0%
!!! CACTGTTTTGGTCTCATAGA+TGG - tig0024111:65919-65938 Msa1414370:intergenic 40.0%
! ATGGGAATGAGACACTGTTT+TGG - tig0024111:65931-65950 Msa1414370:intergenic 40.0%
GACAATGTAGTGAGAAAGGT+GGG - tig0024111:65956-65975 Msa1414370:intergenic 40.0%
TGACAATGTAGTGAGAAAGG+TGG - tig0024111:65957-65976 Msa1414370:intergenic 40.0%
! GGTTGTTGGTGGATAAAGAA+GGG - tig0024111:66120-66139 Msa1414370:intergenic 40.0%
! AGGTTGTTGGTGGATAAAGA+AGG - tig0024111:66121-66140 Msa1414370:intergenic 40.0%
TTGTATGTGTTGGAGGTTGT+TGG - tig0024111:66134-66153 Msa1414370:intergenic 40.0%
TCGTTTCTTGTATGTGTTGG+AGG - tig0024111:66141-66160 Msa1414370:intergenic 40.0%
GTGTTAATATTTCGAGCTCC+TGG - tig0024111:66183-66202 Msa1414370:intergenic 40.0%
!! TGAGTTGATGTCTGGTTTGA+AGG - tig0024111:66233-66252 Msa1414370:intergenic 40.0%
ACCAGCTGTAACCTTTATCA+TGG + tig0024111:66622-66641 Msa1414370:CDS 40.0%
TAAGGAAACGGCCATGATAA+AGG - tig0024111:66636-66655 Msa1414370:intergenic 40.0%
TTTATCATGGCCGTTTCCTT+AGG + tig0024111:66635-66654 Msa1414370:CDS 40.0%
TTATCATGGCCGTTTCCTTA+GGG + tig0024111:66636-66655 Msa1414370:CDS 40.0%
TTTGAGAACAAAAGCAGGGA+AGG + tig0024111:67095-67114 Msa1414370:CDS 40.0%
GTACACTAACAGGAATTGGT+GGG + tig0024111:67130-67149 Msa1414370:CDS 40.0%
TACACTAACAGGAATTGGTG+GGG + tig0024111:67131-67150 Msa1414370:CDS 40.0%
CTCCACTGCTAATACCATTT+CGG + tig0024111:67251-67270 Msa1414370:CDS 40.0%
TCCACTGCTAATACCATTTC+GGG + tig0024111:67252-67271 Msa1414370:CDS 40.0%
TGCACTGTGGCTTATTATTC+AGG + tig0024111:67308-67327 Msa1414370:CDS 40.0%
GCTGTACTTGAGTAATGAGT+AGG - tig0024111:67452-67471 Msa1414370:intergenic 40.0%
AAAGCATAGAGCAAGCACAA+TGG - tig0024111:67504-67523 Msa1414370:intergenic 40.0%
! TGCTTGCTCTATGCTTTGAA+AGG + tig0024111:67507-67526 Msa1414370:CDS 40.0%
!! GCTTGCTCTATGCTTTGAAA+GGG + tig0024111:67508-67527 Msa1414370:CDS 40.0%
TTGAAAGGGATTTGAGTCAG+TGG + tig0024111:67522-67541 Msa1414370:CDS 40.0%
GGATTTGAGTCAGTGGAAAT+TGG + tig0024111:67529-67548 Msa1414370:CDS 40.0%
ACTACTAACCGTTGCTTATG+CGG + tig0024111:67565-67584 Msa1414370:CDS 40.0%
CTAACATACCGCATAAGCAA+CGG - tig0024111:67576-67595 Msa1414370:intergenic 40.0%
!!! ATTTTTTTTTGTGGTGGCCG+TGG + tig0024111:67842-67861 Msa1414370:intron 40.0%
TGGTATATCTTAGCCTCATG+TGG - tig0024111:67964-67983 Msa1414370:intergenic 40.0%
TTGAATTGTGCAGGGTATAG+TGG + tig0024111:67990-68009 Msa1414370:intron 40.0%
TATAGTGGTTTCAGGAGCAA+TGG + tig0024111:68005-68024 Msa1414370:CDS 40.0%
TACCCCTTTAATGCTTCTCA+TGG + tig0024111:68083-68102 Msa1414370:CDS 40.0%
!! CACCATGAGAAGCATTAAAG+GGG - tig0024111:68088-68107 Msa1414370:intergenic 40.0%
!! CCACCATGAGAAGCATTAAA+GGG - tig0024111:68089-68108 Msa1414370:intergenic 40.0%
ATGAGAAACTACACCTTGGA+AGG + tig0024111:68133-68152 Msa1414370:CDS 40.0%
GCAAGCAAATATACCTTCCA+AGG - tig0024111:68149-68168 Msa1414370:intergenic 40.0%
TGGCTTATATGCGGTTGTAT+GGG + tig0024111:68335-68354 Msa1414370:CDS 40.0%
CAACTGGGTCAAATTCATGT+GGG - tig0024111:68410-68429 Msa1414370:intergenic 40.0%
TCAACTGGGTCAAATTCATG+TGG - tig0024111:68411-68430 Msa1414370:intergenic 40.0%
ACCCAGTTGAAATAGTTGTG+AGG + tig0024111:68421-68440 Msa1414370:CDS 40.0%
GACCTCACAACTATTTCAAC+TGG - tig0024111:68426-68445 Msa1414370:intergenic 40.0%
! GAAGGATGTCACGTTCATTT+TGG - tig0024111:68668-68687 Msa1414370:intergenic 40.0%
AACGTGACATCCTTCTAGAT+TGG + tig0024111:68673-68692 Msa1414370:three_prime_UTR 40.0%
!! AGCATTTTGGCCAATCTAGA+AGG - tig0024111:68686-68705 Msa1414370:intergenic 40.0%
AGAAGAGGGCAAAGATGACT+TGG + tig0024111:64540-64559 Msa1414370:exon 45.0%
! ATGCGGTTTGTTTGGGTAAG+TGG + tig0024111:64586-64605 Msa1414370:intron 45.0%
TCTAGGCACTTCTTGTGCTT+GGG - tig0024111:64994-65013 Msa1414370:intergenic 45.0%
TTCTAGGCACTTCTTGTGCT+TGG - tig0024111:64995-65014 Msa1414370:intergenic 45.0%
GGAATTGGCTAAACCACACT+AGG - tig0024111:65077-65096 Msa1414370:intergenic 45.0%
CCGTTGGATTGTCTAGGAAT+TGG - tig0024111:65092-65111 Msa1414370:intergenic 45.0%
!! AGCGTGGCTTTTGGCTAAAA+AGG - tig0024111:65153-65172 Msa1414370:intergenic 45.0%
! TTTTAGCCAAAAGCCACGCT+AGG + tig0024111:65153-65172 Msa1414370:intron 45.0%
TTTAGCCAAAAGCCACGCTA+GGG + tig0024111:65154-65173 Msa1414370:intron 45.0%
!!! TTGGATTGGTTTTGTGGGAG+TGG - tig0024111:65369-65388 Msa1414370:intergenic 45.0%
!!! CGGCATTGGATTGGTTTTGT+GGG - tig0024111:65374-65393 Msa1414370:intergenic 45.0%
!!! ACGGCATTGGATTGGTTTTG+TGG - tig0024111:65375-65394 Msa1414370:intergenic 45.0%
TTTCGTTGTGGCAGCAACTA+CGG - tig0024111:65394-65413 Msa1414370:intergenic 45.0%
TGCCACAACGAAACAGAAGT+AGG + tig0024111:65401-65420 Msa1414370:intron 45.0%
GCCACAACGAAACAGAAGTA+GGG + tig0024111:65402-65421 Msa1414370:intron 45.0%
GATGCTCATCTTTGCGTAAC+AGG - tig0024111:65470-65489 Msa1414370:intergenic 45.0%
! TCTTTGCTTGGCGCCTTTTA+CGG - tig0024111:65544-65563 Msa1414370:intergenic 45.0%
AGATCTTGTGTGGCATCATC+AGG - tig0024111:65585-65604 Msa1414370:intergenic 45.0%
CTCTACTCAATCTGCTCCTT+TGG - tig0024111:65618-65637 Msa1414370:intergenic 45.0%
CAAAGGAGCAGATTGAGTAG+AGG + tig0024111:65616-65635 Msa1414370:intron 45.0%
TAGTGAGAAAGGTGGGTGAT+GGG - tig0024111:65949-65968 Msa1414370:intergenic 45.0%
TCTTCTTGGTGGAAGGAGAT+CGG - tig0024111:66025-66044 Msa1414370:intergenic 45.0%
GAGTTGTTCTTCTTGGTGGA+AGG - tig0024111:66032-66051 Msa1414370:intergenic 45.0%
TCCACCAAGAAGAACAACTC+TGG + tig0024111:66032-66051 Msa1414370:intron 45.0%
! TGGTGGATAAAGAAGGGTTG+TGG - tig0024111:66114-66133 Msa1414370:intergenic 45.0%
TATGTGTTGGAGGTTGTTGG+TGG - tig0024111:66131-66150 Msa1414370:intergenic 45.0%
AATATTTCGAGCTCCTGGCT+GGG - tig0024111:66178-66197 Msa1414370:intergenic 45.0%
TAATATTTCGAGCTCCTGGC+TGG - tig0024111:66179-66198 Msa1414370:intergenic 45.0%
AGCAACATTTGCATCCGCAA+TGG + tig0024111:66589-66608 Msa1414370:CDS 45.0%
! TGGTATAAGGTTGGCCATTG+CGG - tig0024111:66606-66625 Msa1414370:intergenic 45.0%
GGTTACAGCTGGTATAAGGT+TGG - tig0024111:66615-66634 Msa1414370:intergenic 45.0%
GCCATGATAAAGGTTACAGC+TGG - tig0024111:66626-66645 Msa1414370:intergenic 45.0%
GCAGGGAAGGCAAAGATATT+AGG + tig0024111:67108-67127 Msa1414370:CDS 45.0%
GGTACACTAACAGGAATTGG+TGG + tig0024111:67129-67148 Msa1414370:CDS 45.0%
ACCCGAAATGGTATTAGCAG+TGG - tig0024111:67256-67275 Msa1414370:intergenic 45.0%
ATAAGAGATGGCACTAGCCA+AGG - tig0024111:67289-67308 Msa1414370:intergenic 45.0%
AAGCCACAGTGCATAAGAGA+TGG - tig0024111:67301-67320 Msa1414370:intergenic 45.0%
TGAGTCAGTGGAAATTGGGT+TGG + tig0024111:67534-67553 Msa1414370:CDS 45.0%
AACGTTCGGGGTTTAAACCA+CGG - tig0024111:67862-67881 Msa1414370:intergenic 45.0%
TCATGGTGTGTACACATGAG+AGG + tig0024111:68039-68058 Msa1414370:CDS 45.0%
CCCTTTAATGCTTCTCATGG+TGG + tig0024111:68086-68105 Msa1414370:CDS 45.0%
!! GCCACCATGAGAAGCATTAA+AGG - tig0024111:68090-68109 Msa1414370:intergenic 45.0%
AATGCTTCTCATGGTGGCTT+TGG + tig0024111:68092-68111 Msa1414370:CDS 45.0%
GTGGCTTATATGCGGTTGTA+TGG + tig0024111:68334-68353 Msa1414370:CDS 45.0%
GGCTTATATGCGGTTGTATG+GGG + tig0024111:68336-68355 Msa1414370:CDS 45.0%
ATTGGCCAAAATGCTACCAG+CGG + tig0024111:68691-68710 Msa1414370:three_prime_UTR 45.0%
AGAATCAAAATAGGGTCCGC+TGG - tig0024111:68710-68729 Msa1414370:intergenic 45.0%
!!! TTTTATTTATTTATTGATTT+TGG + tig0024111:67399-67418 Msa1414370:intron 5.0%
!!! TTTATTTATTTATTGATTTT+GGG + tig0024111:67400-67419 Msa1414370:intron 5.0%
!! ATGATTAATAAATTTATAAA+AGG - tig0024111:68171-68190 Msa1414370:intergenic 5.0%
!! AAATATAATATTTACTTTAT+TGG + tig0024111:68248-68267 Msa1414370:intron 5.0%
TCAAGCCCGTTGGATTGTCT+AGG - tig0024111:65098-65117 Msa1414370:intergenic 50.0%
TTGTCTGTGGTACTCAGAGG+TGG - tig0024111:65124-65143 Msa1414370:intergenic 50.0%
! TTTGTCCCTAGCGTGGCTTT+TGG - tig0024111:65162-65181 Msa1414370:intergenic 50.0%
! CAGCAACTACGGCATTGGAT+TGG - tig0024111:65383-65402 Msa1414370:intergenic 50.0%
GCCCTACTTCTGTTTCGTTG+TGG - tig0024111:65406-65425 Msa1414370:intergenic 50.0%
AGTGGTTAGCAGATTCGACC+TGG + tig0024111:65438-65457 Msa1414370:intron 50.0%
CATCTTTGCGTAACAGGGTG+TGG - tig0024111:65464-65483 Msa1414370:intergenic 50.0%
! CTTGGCGCCTTTTACGGAAT+AGG - tig0024111:65538-65557 Msa1414370:intergenic 50.0%
! TTCTCTCGTGGCCTTGATCA+GGG - tig0024111:65815-65834 Msa1414370:intergenic 50.0%
TGGTCTCATAGATGGTTGGG+TGG - tig0024111:65911-65930 Msa1414370:intergenic 50.0%
GTAGTGAGAAAGGTGGGTGA+TGG - tig0024111:65950-65969 Msa1414370:intergenic 50.0%
CTTCTTGGTGGAAGGAGATC+GGG - tig0024111:66024-66043 Msa1414370:intergenic 50.0%
GCCAGAGTTGTTCTTCTTGG+TGG - tig0024111:66036-66055 Msa1414370:intergenic 50.0%
ATGTGTTAGCTGCCCGTTAC+GGG - tig0024111:66087-66106 Msa1414370:intergenic 50.0%
CATGTGTTAGCTGCCCGTTA+CGG - tig0024111:66088-66107 Msa1414370:intergenic 50.0%
AACAGGAATTGGTGGGGCAA+TGG + tig0024111:67137-67156 Msa1414370:CDS 50.0%
GGCACACATAGAACCCGAAA+TGG - tig0024111:67268-67287 Msa1414370:intergenic 50.0%
! TTCGGGTTCTATGTGTGCCT+TGG + tig0024111:67269-67288 Msa1414370:CDS 50.0%
GTGCCATCTCTTATGCACTG+TGG + tig0024111:67295-67314 Msa1414370:CDS 50.0%
GTGCAGGGTATAGTGGTTTC+AGG + tig0024111:67997-68016 Msa1414370:intron 50.0%
!! GGAGCGGTGTTGATTGTATG+TGG + tig0024111:68315-68334 Msa1414370:CDS 50.0%
TCTGTGGTACTCAGAGGTGG+TGG - tig0024111:65121-65140 Msa1414370:intergenic 55.0%
TGTGGCAGCAACTACGGCAT+TGG - tig0024111:65388-65407 Msa1414370:intergenic 55.0%
TGATCACGTGGGGGGTTACT+CGG - tig0024111:65666-65685 Msa1414370:intergenic 55.0%
AGTAACCCCCCACGTGATCA+GGG + tig0024111:65666-65685 Msa1414370:intron 55.0%
! GTTCTCTCGTGGCCTTGATC+AGG - tig0024111:65816-65835 Msa1414370:intergenic 55.0%
! AGAGGGTGGTGGTGATGTTG+GGG - tig0024111:65993-66012 Msa1414370:intergenic 55.0%
! GAGAGGGTGGTGGTGATGTT+GGG - tig0024111:65994-66013 Msa1414370:intergenic 55.0%
GAGATCGGGAGGATTCGAGA+GGG - tig0024111:66010-66029 Msa1414370:intergenic 55.0%
GGGGCCAGAGTTGTTCTTCT+TGG - tig0024111:66039-66058 Msa1414370:intergenic 55.0%
TTGGTGGGAGGTTGGAGGTA+GGG - tig0024111:66060-66079 Msa1414370:intergenic 55.0%
TGTGTTAGCTGCCCGTTACG+GGG - tig0024111:66086-66105 Msa1414370:intergenic 55.0%
!! CTTCTCATGGTGGCTTTGGC+TGG + tig0024111:68096-68115 Msa1414370:CDS 55.0%
! AGGGTCCGCTGGTAGCATTT+TGG - tig0024111:68699-68718 Msa1414370:intergenic 55.0%
TTGCGTAACAGGGTGTGGCC+AGG - tig0024111:65459-65478 Msa1414370:intergenic 60.0%
GAGTAACCCCCCACGTGATC+AGG + tig0024111:65665-65684 Msa1414370:intron 60.0%
TGTGGCTCCCTGATCACGTG+GGG - tig0024111:65676-65695 Msa1414370:intergenic 60.0%
GTGTGGCTCCCTGATCACGT+GGG - tig0024111:65677-65696 Msa1414370:intergenic 60.0%
!! TTGATCAGGGTGGTGGGGGT+TGG - tig0024111:65802-65821 Msa1414370:intergenic 60.0%
AACCCCCACCACCCTGATCA+AGG + tig0024111:65801-65820 Msa1414370:intron 60.0%
! TGGCCTTGATCAGGGTGGTG+GGG - tig0024111:65807-65826 Msa1414370:intergenic 60.0%
! GTGGCCTTGATCAGGGTGGT+GGG - tig0024111:65808-65827 Msa1414370:intergenic 60.0%
! TCTCGTGGCCTTGATCAGGG+TGG - tig0024111:65812-65831 Msa1414370:intergenic 60.0%
! GTGGTGATGTTGGGGGTAGG+TGG - tig0024111:65985-66004 Msa1414370:intergenic 60.0%
! GTGGTGGTGATGTTGGGGGT+AGG - tig0024111:65988-66007 Msa1414370:intergenic 60.0%
! GAGGGTGGTGGTGATGTTGG+GGG - tig0024111:65992-66011 Msa1414370:intergenic 60.0%
! CGAGAGGGTGGTGGTGATGT+TGG - tig0024111:65995-66014 Msa1414370:intergenic 60.0%
ATCGGGAGGATTCGAGAGGG+TGG - tig0024111:66007-66026 Msa1414370:intergenic 60.0%
GGAGATCGGGAGGATTCGAG+AGG - tig0024111:66011-66030 Msa1414370:intergenic 60.0%
CTTGGTGGAAGGAGATCGGG+AGG - tig0024111:66021-66040 Msa1414370:intergenic 60.0%
TGGTGGGAGGTTGGAGGTAG+GGG - tig0024111:66059-66078 Msa1414370:intergenic 60.0%
! GTTGGTGGGAGGTTGGAGGT+AGG - tig0024111:66061-66080 Msa1414370:intergenic 60.0%
TCCCACCAACAGCCCCGTAA+CGG + tig0024111:66071-66090 Msa1414370:intron 60.0%
! GAGGTGGTGGTCAAGCCCGT+TGG - tig0024111:65108-65127 Msa1414370:intergenic 65.0%
! GTGGGGGGTTACTCGGTTCG+AGG - tig0024111:65659-65678 Msa1414370:intergenic 65.0%
TGGCTCCCTGATCACGTGGG+GGG - tig0024111:65674-65693 Msa1414370:intergenic 65.0%
GTGGCTCCCTGATCACGTGG+GGG - tig0024111:65675-65694 Msa1414370:intergenic 65.0%
GGTGTGGCTCCCTGATCACG+TGG - tig0024111:65678-65697 Msa1414370:intergenic 65.0%
GAGGAGGCGGCTGTGGGTTT+GGG - tig0024111:65774-65793 Msa1414370:intergenic 65.0%
!! ATCAGGGTGGTGGGGGTTGG+CGG - tig0024111:65799-65818 Msa1414370:intergenic 65.0%
! GGCCTTGATCAGGGTGGTGG+GGG - tig0024111:65806-65825 Msa1414370:intergenic 65.0%
! CGTGGCCTTGATCAGGGTGG+TGG - tig0024111:65809-65828 Msa1414370:intergenic 65.0%
GGGAGGATTCGAGAGGGTGG+TGG - tig0024111:66004-66023 Msa1414370:intergenic 65.0%
GGTGGGAGGTTGGAGGTAGG+GGG - tig0024111:66058-66077 Msa1414370:intergenic 65.0%
! GGCTGTTGGTGGGAGGTTGG+AGG - tig0024111:66065-66084 Msa1414370:intergenic 65.0%
! GTTACGGGGCTGTTGGTGGG+AGG - tig0024111:66072-66091 Msa1414370:intergenic 65.0%
CCCGTTACGGGGCTGTTGGT+GGG - tig0024111:66075-66094 Msa1414370:intergenic 65.0%
CCCACCAACAGCCCCGTAAC+GGG + tig0024111:66072-66091 Msa1414370:intron 65.0%
TTCGAGCTCCTGGCTGGGAG+AGG - tig0024111:66173-66192 Msa1414370:intergenic 65.0%
GAGGCGGCTGTGGGTTTGGG+AGG - tig0024111:65771-65790 Msa1414370:intergenic 70.0%
GGAGGAGGCGGCTGTGGGTT+TGG - tig0024111:65775-65794 Msa1414370:intergenic 70.0%
! CGGGGCTGTTGGTGGGAGGT+TGG - tig0024111:66068-66087 Msa1414370:intergenic 70.0%
GCCCGTTACGGGGCTGTTGG+TGG - tig0024111:66076-66095 Msa1414370:intergenic 70.0%
GCTGCCCGTTACGGGGCTGT+TGG - tig0024111:66079-66098 Msa1414370:intergenic 70.0%
GAGCTCCTGGCTGGGAGAGG+CGG - tig0024111:66170-66189 Msa1414370:intergenic 70.0%
GCGGTGGAGGAGGCGGCTGT+GGG - tig0024111:65780-65799 Msa1414370:intergenic 75.0%
! GGGGTTGGCGGTGGAGGAGG+CGG - tig0024111:65787-65806 Msa1414370:intergenic 75.0%
! GTGGGGGTTGGCGGTGGAGG+AGG - tig0024111:65790-65809 Msa1414370:intergenic 75.0%
! GTGGTGGGGGTTGGCGGTGG+AGG - tig0024111:65793-65812 Msa1414370:intergenic 75.0%
!! AGGGTGGTGGGGGTTGGCGG+TGG - tig0024111:65796-65815 Msa1414370:intergenic 75.0%
AGCCTCCGCCTCTCCCAGCC+AGG + tig0024111:66162-66181 Msa1414370:intron 75.0%
CTCCTGGCTGGGAGAGGCGG+AGG - tig0024111:66167-66186 Msa1414370:intergenic 75.0%
! GGCGGTGGAGGAGGCGGCTG+TGG - tig0024111:65781-65800 Msa1414370:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0024111 gene 64145 69041 64145 ID=Msa1414370;Name=Msa1414370
tig0024111 mRNA 64145 69041 64145 ID=Msa1414370-mRNA-1;Parent=Msa1414370;Name=Msa1414370-mRNA-1;_AED=0.16;_eAED=0.16;_QI=71|0.66|0.57|1|1|0.85|7|463|331
tig0024111 exon 64145 64199 64145 ID=Msa1414370-mRNA-1:exon:21739;Parent=Msa1414370-mRNA-1
tig0024111 exon 64538 64600 64538 ID=Msa1414370-mRNA-1:exon:21740;Parent=Msa1414370-mRNA-1
tig0024111 exon 66541 66657 66541 ID=Msa1414370-mRNA-1:exon:21741;Parent=Msa1414370-mRNA-1
tig0024111 exon 67080 67329 67080 ID=Msa1414370-mRNA-1:exon:21742;Parent=Msa1414370-mRNA-1
tig0024111 exon 67428 67586 67428 ID=Msa1414370-mRNA-1:exon:21743;Parent=Msa1414370-mRNA-1
tig0024111 exon 68003 68154 68003 ID=Msa1414370-mRNA-1:exon:21744;Parent=Msa1414370-mRNA-1
tig0024111 exon 68308 69041 68308 ID=Msa1414370-mRNA-1:exon:21745;Parent=Msa1414370-mRNA-1
tig0024111 five_prime_UTR 64145 64199 64145 ID=Msa1414370-mRNA-1:five_prime_utr;Parent=Msa1414370-mRNA-1
tig0024111 five_prime_UTR 64538 64553 64538 ID=Msa1414370-mRNA-1:five_prime_utr;Parent=Msa1414370-mRNA-1
tig0024111 CDS 64554 64600 64554 ID=Msa1414370-mRNA-1:cds;Parent=Msa1414370-mRNA-1
tig0024111 CDS 66541 66657 66541 ID=Msa1414370-mRNA-1:cds;Parent=Msa1414370-mRNA-1
tig0024111 CDS 67080 67329 67080 ID=Msa1414370-mRNA-1:cds;Parent=Msa1414370-mRNA-1
tig0024111 CDS 67428 67586 67428 ID=Msa1414370-mRNA-1:cds;Parent=Msa1414370-mRNA-1
tig0024111 CDS 68003 68154 68003 ID=Msa1414370-mRNA-1:cds;Parent=Msa1414370-mRNA-1
tig0024111 CDS 68308 68578 68308 ID=Msa1414370-mRNA-1:cds;Parent=Msa1414370-mRNA-1
tig0024111 three_prime_UTR 68579 69041 68579 ID=Msa1414370-mRNA-1:three_prime_utr;Parent=Msa1414370-mRNA-1
Gene Sequence

>Msa1414370

ATGACTTGGACAATACTGTTTCAGTCATTTTTATGCGGTTTGTTTGGGGGATCATTAGCTCAAAACTTTAACTTACAAGCCCTGACTTTAACTTCAGCAACATTTGCATCCGCAATGGCCAACCTTATACCAGCTGTAACCTTTATCATGGCCGTTTCCTTAGGTATGGAAAAATTAAATTTGAGAACAAAAGCAGGGAAGGCAAAGATATTAGGTACACTAACAGGAATTGGTGGGGCAATGGTATCGACATTCGTTAAAGGTGTTGAAATTAAGATGGGTTCATTCCATTTAAATCTTTTGCATCATCAAAATGGTGTTGGATCACACACTATCTCCACTGCTAATACCATTTCGGGTTCTATGTGTGCCTTGGCTAGTGCCATCTCTTATGCACTGTGGCTTATTATTCAGACAAAGATGAGTGAAAGATACCCTACTCATTACTCAAGTACAGCGTTGATATCTTTTTGGGCGTCACTTGTTTCCATTGTGCTTGCTCTATGCTTTGAAAGGGATTTGAGTCAGTGGAAATTGGGTTGGAATATTAGACTACTAACCGTTGCTTATGCGGGTATAGTGGTTTCAGGAGCAATGGTAGCTGTAATTTCATGGTGTGTACACATGAGAGGTCCATTGTTTGCCTCAGTTTTTACCCCTTTAATGCTTCTCATGGTGGCTTTGGCTGGTTGTACCATTTTGAATGAGAAACTACACCTTGGAAGCATTATTGGAGCGGTGTTGATTGTATGTGGCTTATATGCGGTTGTATGGGGAAAAAGTAAAGAAATGAAGAAAAAGAATCAATTAGTGCCATCAAAAAACCCACATGAATTTGACCCAGTTGAAATAGTTGTGAGGTCTATAGAAGAAGATAAAAGCAACCACAACAACAATAATCAAGGTAATACTTTACAGGTGGTTAAGGATAATGAAGATTCACAAGCAGATGAACATGAAAAGCAAAGTCAACATGTAGAAAGTCAAGAAAAATGA
Protein sequence

>Msa1414370

MTWTILFQSFLCGLFGGSLAQNFNLQALTLTSATFASAMANLIPAVTFIMAVSLGMEKLNLRTKAGKAKILGTLTGIGGAMVSTFVKGVEIKMGSFHLNLLHHQNGVGSHTISTANTISGSMCALASAISYALWLIIQTKMSERYPTHYSSTALISFWASLVSIVLALCFERDLSQWKLGWNIRLLTVAYAGIVVSGAMVAVISWCVHMRGPLFASVFTPLMLLMVALAGCTILNEKLHLGSIIGAVLIVCGLYAVVWGKSKEMKKKNQLVPSKNPHEFDPVEIVVRSIEEDKSNHNNNNQGNTLQVVKDNEDSQADEHEKQSQHVESQEK*