AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1415510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1415510 MtrunA17_Chr4g0046561 93.766 401 0 1 1 376 1 401 0.0 744
Msa1415510 MtrunA17_Chr5g0419001 83.390 295 49 0 82 376 112 406 0.0 517
Msa1415510 MtrunA17_Chr3g0097931 44.599 287 150 4 82 363 118 400 1.07e-72 232
Msa1415510 MtrunA17_Chr2g0288011 43.554 287 153 4 82 363 112 394 2.61e-71 228
Msa1415510 MtrunA17_Chr4g0074541 45.263 285 147 4 84 363 111 391 3.60e-70 225
Msa1415510 MtrunA17_Chr2g0291851 42.105 285 155 5 82 360 111 391 3.42e-63 207
Msa1415510 MtrunA17_Chr6g0449891 39.118 340 188 8 48 376 87 418 9.68e-60 199
Msa1415510 MtrunA17_Chr3g0117501 37.994 329 185 6 55 373 91 410 5.48e-58 194
Msa1415510 MtrunA17_Chr4g0058971 39.161 286 156 7 85 360 96 373 2.73e-57 191
Msa1415510 MtrunA17_Chr1g0160071 25.170 294 206 5 84 369 24 311 1.15e-20 92.0
Msa1415510 MtrunA17_Chr3g0114581 24.490 294 208 5 84 369 25 312 1.55e-19 88.6
Msa1415510 MtrunA17_Chr4g0008071 27.907 301 177 10 90 371 29 308 3.19e-16 78.6
Msa1415510 MtrunA17_Chr3g0112981 26.471 306 204 9 79 375 30 323 3.86e-14 72.8
Msa1415510 MtrunA17_Chr4g0056661 26.384 307 199 7 82 376 61 352 3.67e-13 70.1
Msa1415510 MtrunA17_Chr5g0436341 27.832 309 194 13 79 374 14 306 5.94e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1415510 AT5G46110.1 75.122 410 68 5 1 376 1 410 0.0 591
Msa1415510 AT5G46110.4 74.755 408 69 5 1 374 1 408 0.0 587
Msa1415510 AT5G46110.3 72.927 410 66 6 1 376 1 399 0.0 564
Msa1415510 AT5G46110.2 91.186 295 26 0 82 376 3 297 0.0 556
Msa1415510 AT5G54800.1 45.645 287 147 4 82 363 105 387 1.46e-74 236
Msa1415510 AT1G61800.1 44.561 285 149 4 84 363 107 387 3.91e-71 228
Msa1415510 AT1G61800.2 43.902 287 152 4 84 365 107 389 8.64e-71 227
Msa1415510 AT5G17630.1 42.662 293 158 5 82 368 120 408 9.71e-69 222
Msa1415510 AT3G01550.1 38.750 320 184 4 64 376 69 383 1.62e-58 195
Msa1415510 AT5G33320.1 38.079 302 168 6 82 373 116 408 2.11e-54 185
Msa1415510 AT3G01550.2 38.742 302 168 5 82 376 87 378 4.21e-52 178
Msa1415510 AT4G03950.1 32.414 290 138 7 82 369 26 259 2.08e-31 120
Msa1415510 AT1G77610.1 24.522 314 220 6 64 369 2 306 3.77e-20 90.9
Msa1415510 AT1G21870.1 24.407 295 209 5 84 370 25 313 1.68e-18 86.3
Msa1415510 AT1G12500.1 27.273 308 206 6 73 372 58 355 7.27e-17 81.6
Msa1415510 AT3G11320.1 27.759 299 185 11 90 374 27 308 1.32e-15 77.4
Msa1415510 AT5G05820.1 27.211 294 190 10 90 372 27 307 7.78e-15 75.1

Find 126 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCGTTAACCGTCTCTTCTT+TGG 0.202876 tig0024240:-4515 Msa1415510:intergenic
AATTCGTATCAGATCTCTTC+TGG 0.213269 tig0024240:+7600 Msa1415510:CDS
AGAGCTATTTATGGCAATAA+TGG 0.232468 tig0024240:-8389 Msa1415510:intergenic
TCACTTGCTCCCGTTGTTCT+TGG 0.232843 tig0024240:+6914 Msa1415510:CDS
AATCAATTCACTCACAATTA+AGG 0.248369 tig0024240:-7394 Msa1415510:intergenic
CGTGTCGGTTATCCATTTAT+TGG 0.263404 tig0024240:+6134 Msa1415510:CDS
AAACCACTCCCACCAATAAA+TGG 0.287957 tig0024240:-6146 Msa1415510:intergenic
TCGCTTCTCTTCCTCGATCT+TGG 0.296285 tig0024240:-8048 Msa1415510:intergenic
TGGTTTACTGTTTGGTCAGC+TGG 0.324605 tig0024240:+6163 Msa1415510:CDS
ACTCTTTGTGCAGACTGATA+TGG 0.337590 tig0024240:+7311 Msa1415510:intron
CTCAAACGTGTATTTGTCAT+TGG 0.341903 tig0024240:+7805 Msa1415510:CDS
TTCAGCTGGTTGCCGTCTAT+TGG 0.351037 tig0024240:-6631 Msa1415510:intergenic
GATGGCGGGAACCTTGTCTT+TGG 0.354173 tig0024240:+4740 Msa1415510:CDS
GGCAGTTCCGATACCAGTTT+GGG 0.371644 tig0024240:-7985 Msa1415510:intergenic
AATCAATTCCCATCACTCTA+TGG 0.376851 tig0024240:+6888 Msa1415510:CDS
TGGCAGTTCCGATACCAGTT+TGG 0.380423 tig0024240:-7986 Msa1415510:intergenic
AACAAGTAGAGAGTGATATA+TGG 0.386915 tig0024240:-4565 Msa1415510:intergenic
CTCGATCTTGGCTTTGATGA+AGG 0.387113 tig0024240:-8036 Msa1415510:intergenic
GGAACTGCCATTGCAATTGC+TGG 0.398196 tig0024240:+7999 Msa1415510:CDS
ACATTGGAATTTAAAATCTT+CGG 0.406321 tig0024240:+8568 Msa1415510:three_prime_UTR
AACTGATCCGATCGATTTCA+CGG 0.408658 tig0024240:-4714 Msa1415510:intergenic
TTAATAACTTACTAAGGATA+GGG 0.410074 tig0024240:-5409 Msa1415510:intergenic
AACAAGATTTCCACCCAAAC+TGG 0.413459 tig0024240:+7972 Msa1415510:CDS
TGCAATTGCTAAAGTAGGTT+TGG 0.416940 tig0024240:+7574 Msa1415510:CDS
CAAACATTTCATTTACATAC+AGG 0.419014 tig0024240:+7173 Msa1415510:CDS
ACGAGGGAGGGAGGAGAGTG+TGG 0.419739 tig0024240:-4642 Msa1415510:intergenic
CACTCTCTCCAATGTGTTGG+TGG 0.419872 tig0024240:-7752 Msa1415510:intergenic
ACTAAGAGGTTTATATGTCT+TGG 0.422975 tig0024240:-8508 Msa1415510:intergenic
TGACTGAGCTCTCATTCAAT+TGG 0.423986 tig0024240:+7125 Msa1415510:CDS
GTAGCTGTGTGTCATGCATT+AGG 0.442771 tig0024240:+6667 Msa1415510:CDS
GGTGGGAGTGGTTTACTGTT+TGG 0.449636 tig0024240:+6155 Msa1415510:CDS
AGACATATAAACCTCTTAGT+TGG 0.457938 tig0024240:+8511 Msa1415510:three_prime_UTR
GCTGATGCAATTGCTAAAGT+AGG 0.460289 tig0024240:+7569 Msa1415510:CDS
GATCGATTTCACGGAGAGGA+TGG 0.462299 tig0024240:-4705 Msa1415510:intergenic
TTTAATAACTTACTAAGGAT+AGG 0.467169 tig0024240:-5410 Msa1415510:intergenic
GTCGGTTATCCATTTATTGG+TGG 0.471853 tig0024240:+6137 Msa1415510:CDS
CGGCAGCGGCGAGGCAAGGA+CGG 0.472383 tig0024240:-4820 Msa1415510:intergenic
TTTGTTGAGACGAGGGAGGG+AGG 0.472501 tig0024240:-4651 Msa1415510:intergenic
AGAGCCGGTGAACAGAGTTC+AGG 0.474149 tig0024240:-4776 Msa1415510:intergenic
ATTCGTATCAGATCTCTTCT+GGG 0.475461 tig0024240:+7601 Msa1415510:CDS
GCTGCTTCACAATTCATACT+TGG 0.476554 tig0024240:+6863 Msa1415510:CDS
TAGAGCAATGATGGAAATGT+AGG 0.479737 tig0024240:-7352 Msa1415510:intergenic
GGAGAGGATGGAAGCGCCAT+TGG 0.481765 tig0024240:-4693 Msa1415510:intergenic
GCAGACAATTAGAGCAATGA+TGG 0.483032 tig0024240:-7361 Msa1415510:intergenic
AAGAAGTTACCAAGAACAAC+GGG 0.487858 tig0024240:-6923 Msa1415510:intergenic
TATCCATTTATTGGTGGGAG+TGG 0.488687 tig0024240:+6143 Msa1415510:CDS
AGCAATTGCATCAGCGAAGC+CGG 0.492917 tig0024240:-7561 Msa1415510:intergenic
ACCTCACCCGGCGGAATCAT+CGG 0.495091 tig0024240:-4840 Msa1415510:intergenic
TGCAGCAAATGAGACATTGC+TGG 0.495272 tig0024240:-6698 Msa1415510:intergenic
CCTTGTTCATTCAGAAAACA+AGG 0.495300 tig0024240:+8320 Msa1415510:three_prime_UTR
AGACTCAACAACCAACTAAG+AGG 0.499187 tig0024240:-8522 Msa1415510:intergenic
CGATGAAGTTTGTTGAGACG+AGG 0.500425 tig0024240:-4659 Msa1415510:intergenic
GAGAGACTTACTGCGCGCTT+AGG 0.501415 tig0024240:-6198 Msa1415510:intergenic
CAGCAAGCAAAAGCAGCATA+AGG 0.501533 tig0024240:+8161 Msa1415510:intron
TCGGTTATCCATTTATTGGT+GGG 0.505174 tig0024240:+6138 Msa1415510:CDS
GAGCTCTCATTCAATTGGCT+CGG 0.505943 tig0024240:+7130 Msa1415510:CDS
CGGGAATCAGCAACTTCAGC+TGG 0.506724 tig0024240:-6645 Msa1415510:intergenic
AGCAGCATAAGGCGTCAACT+TGG 0.507742 tig0024240:+8172 Msa1415510:exon
GATTTACCTGGTTGTAGAGA+TGG 0.509613 tig0024240:-7637 Msa1415510:intergenic
GCCGCTGCCGATGATTCCGC+CGG 0.511156 tig0024240:+4833 Msa1415510:CDS
AAGTTTGTTGAGACGAGGGA+GGG 0.518226 tig0024240:-4654 Msa1415510:intergenic
GATTTGATCCCATAGATTGA+AGG 0.520311 tig0024240:+7521 Msa1415510:intron
TCGGATCAGTTTCTGATGGC+GGG 0.521746 tig0024240:+4726 Msa1415510:CDS
AAGTGAGAGCCATAGAGTGA+TGG 0.522847 tig0024240:-6897 Msa1415510:intergenic
AGTGAGAGCCATAGAGTGAT+GGG 0.525111 tig0024240:-6896 Msa1415510:intergenic
AGCCACTCTCTCCAATGTGT+TGG 0.526441 tig0024240:-7755 Msa1415510:intergenic
AATTATAGATCTTCTTGTTG+AGG 0.527892 tig0024240:-5381 Msa1415510:intergenic
TCTTTCACACATACCATCAA+AGG 0.528158 tig0024240:+6730 Msa1415510:CDS
AATGCATGACACACAGCTAC+GGG 0.532470 tig0024240:-6664 Msa1415510:intergenic
ATTTCCACCCAAACTGGTAT+CGG 0.535499 tig0024240:+7978 Msa1415510:CDS
TAATAACTTACTAAGGATAG+GGG 0.543020 tig0024240:-5408 Msa1415510:intergenic
GTATCAGATCTCTTCTGGGT+TGG 0.543662 tig0024240:+7605 Msa1415510:CDS
CTGTTTGGTCAGCTGGACCG+TGG 0.546831 tig0024240:+6170 Msa1415510:CDS
TCATCGGCAGCGGCGAGGCA+AGG 0.548987 tig0024240:-4824 Msa1415510:intergenic
ACTCCATTAGAATCAAAATG+TGG 0.551061 tig0024240:-4598 Msa1415510:intergenic
ATTTGATCCCATAGATTGAA+GGG 0.554805 tig0024240:+7522 Msa1415510:intron
CCCGGCGGAATCATCGGCAG+CGG 0.556477 tig0024240:-4834 Msa1415510:intergenic
GATGTTTGTGTTGGTACCTG+TGG 0.556664 tig0024240:-4540 Msa1415510:intergenic
GCTCCTCTCACTCATGCCGT+TGG 0.557451 tig0024240:+7775 Msa1415510:CDS
TAATGCATGACACACAGCTA+CGG 0.558261 tig0024240:-6665 Msa1415510:intergenic
ACACACATGAATGTAGTCTC+TGG 0.560522 tig0024240:+8466 Msa1415510:three_prime_UTR
ATGAGACATTGCTGGTCACA+TGG 0.561772 tig0024240:-6690 Msa1415510:intergenic
GACTTACTGCGCGCTTAGGA+AGG 0.561943 tig0024240:-6194 Msa1415510:intergenic
TTGTTTGTGTAGCCAATAGA+CGG 0.564438 tig0024240:+6619 Msa1415510:intron
AGCATAAGGCGTCAACTTGG+AGG 0.572414 tig0024240:+8175 Msa1415510:exon
TGTTTGGTCAGCTGGACCGT+GGG 0.573783 tig0024240:+6171 Msa1415510:CDS
CACCAACACATTGGAGAGAG+TGG 0.574915 tig0024240:+7753 Msa1415510:CDS
TATATGGATGATGTTTGTGT+TGG 0.581522 tig0024240:-4549 Msa1415510:intergenic
ATCCTCTCCGTGAAATCGAT+CGG 0.583038 tig0024240:+4707 Msa1415510:CDS
CTCCATTAGAATCAAAATGT+GGG 0.586256 tig0024240:-4597 Msa1415510:intergenic
TCACCGGCTCTTAAGAAAAG+TGG 0.587737 tig0024240:+4788 Msa1415510:CDS
TGCCATTGCAATTGCTGGAG+TGG 0.587820 tig0024240:+8004 Msa1415510:CDS
CCGCTGCCGATGATTCCGCC+GGG 0.591829 tig0024240:+4834 Msa1415510:CDS
GAAGCAGCAGCATTAAAGAA+TGG 0.593864 tig0024240:-6848 Msa1415510:intergenic
CCAGGTGGCCACCAACACAT+TGG 0.595085 tig0024240:+7744 Msa1415510:intron
AGGGAGGGAGGAGAGTGTGG+TGG 0.595691 tig0024240:-4639 Msa1415510:intergenic
TTGCCAACGGCATGAGTGAG+AGG 0.596312 tig0024240:-7778 Msa1415510:intergenic
TCGTCCTGAACTCTGTTCAC+CGG 0.596519 tig0024240:+4772 Msa1415510:CDS
CATCGTGAACACCTCACCAA+TGG 0.599816 tig0024240:+4677 Msa1415510:CDS
ATCTCATGAACTAAGCACAT+TGG 0.604393 tig0024240:+8552 Msa1415510:three_prime_UTR
CGGAATCATCGGCAGCGGCG+AGG 0.608524 tig0024240:-4829 Msa1415510:intergenic
ATCGGATCAGTTTCTGATGG+CGG 0.609178 tig0024240:+4725 Msa1415510:CDS
GGATGGAAGCGCCATTGGTG+AGG 0.610076 tig0024240:-4688 Msa1415510:intergenic
TCTAATTGTCTGCATACCAC+CGG 0.610547 tig0024240:+7371 Msa1415510:CDS
ACGTTTGAGTACGTTGCCAA+CGG 0.612463 tig0024240:-7791 Msa1415510:intergenic
AATTCACTCACAATTAAGGC+CGG 0.613004 tig0024240:-7390 Msa1415510:intergenic
TATTTGCTCCAAAGAAGAGA+CGG 0.623172 tig0024240:+4507 Msa1415510:five_prime_UTR
TGCCACTCCAGCAATTGCAA+TGG 0.625518 tig0024240:-8006 Msa1415510:intergenic
TATCTATTCAAAGAAAGCCA+TGG 0.627126 tig0024240:+7198 Msa1415510:CDS
GATGAAGTTTGTTGAGACGA+GGG 0.627977 tig0024240:-4658 Msa1415510:intergenic
GAAGTTTGTTGAGACGAGGG+AGG 0.628044 tig0024240:-4655 Msa1415510:intergenic
AGACGGTTAACGAGAACCAC+AGG 0.632710 tig0024240:+4524 Msa1415510:five_prime_UTR
GTGTATGTGCAGCTTCGTGT+CGG 0.636132 tig0024240:+6119 Msa1415510:intron
CAGCGGCGAGGCAAGGACGG+AGG 0.637021 tig0024240:-4817 Msa1415510:intergenic
TGCGCGCTTAGGAAGGCCCA+CGG 0.638276 tig0024240:-6187 Msa1415510:intergenic
GAAGTTGTCTTCCAAAGACA+AGG 0.638659 tig0024240:-4751 Msa1415510:intergenic
GGGCCTACACTGTTGAAGAC+CGG 0.640749 tig0024240:+7542 Msa1415510:CDS
AAGCCGGTCTTCAACAGTGT+AGG 0.642574 tig0024240:-7545 Msa1415510:intergenic
TCGATCGGATCAGTTTCTGA+TGG 0.645770 tig0024240:+4722 Msa1415510:CDS
TAAGAAGTTACCAAGAACAA+CGG 0.648794 tig0024240:-6924 Msa1415510:intergenic
AGTTCCGATACCAGTTTGGG+TGG 0.649750 tig0024240:-7982 Msa1415510:intergenic
GGAAATGTAGGCATAGACAT+TGG 0.654461 tig0024240:-7340 Msa1415510:intergenic
AATGTGCTTAGTTCATGAGA+TGG 0.658035 tig0024240:-8550 Msa1415510:intergenic
CTTCATCAAAGCCAAGATCG+AGG 0.668234 tig0024240:+8037 Msa1415510:CDS
TCACTCACAATTAAGGCCGG+TGG 0.670675 tig0024240:-7387 None:intergenic
ATCCGATCGATTTCACGGAG+AGG 0.699922 tig0024240:-4709 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAAAAATAATAAGATACA+AGG - tig0024240:5490-5509 Msa1415510:intergenic 15.0%
!!! CAATCTTTTTTTTTTTTTTG+AGG + tig0024240:5748-5767 Msa1415510:intron 15.0%
!! AAAACTTTATGATAAAGATA+TGG + tig0024240:6759-6778 Msa1415510:intron 15.0%
!!! ATTTTCAATGTAAACAATTT+TGG + tig0024240:7663-7682 Msa1415510:intron 15.0%
!! AAGTGTTTATTTACTTATAT+TGG + tig0024240:7895-7914 Msa1415510:intron 15.0%
!! AGTGTTTATTTACTTATATT+GGG + tig0024240:7896-7915 Msa1415510:intron 15.0%
!!! AATGTTGTTTTTTTGTTTAC+AGG + tig0024240:4913-4932 Msa1415510:intron 20.0%
!!! ATGTTGTTTTTTTGTTTACA+GGG + tig0024240:4914-4933 Msa1415510:intron 20.0%
!! TTAATAACTTACTAAGGATA+GGG - tig0024240:5412-5431 Msa1415510:intergenic 20.0%
!! TTTAATAACTTACTAAGGAT+AGG - tig0024240:5413-5432 Msa1415510:intergenic 20.0%
!!! CGAATTTTAATAACTTACTA+AGG - tig0024240:5418-5437 Msa1415510:intergenic 20.0%
!!! ATCTGAATTCTTTTTTTGAA+GGG - tig0024240:5682-5701 Msa1415510:intergenic 20.0%
!!! AATCTGAATTCTTTTTTTGA+AGG - tig0024240:5683-5702 Msa1415510:intergenic 20.0%
!!! GAATGTATCTACTTTTTTTA+CGG + tig0024240:5876-5895 Msa1415510:intron 20.0%
!! AAAAAAAAAAAAGTTAGACC+TGG + tig0024240:6327-6346 Msa1415510:intron 20.0%
!! AGTTTCACAATAAATAAGTT+AGG + tig0024240:6528-6547 Msa1415510:intron 20.0%
!! AAAATCTAAGTATATTTGCT+AGG - tig0024240:7255-7274 Msa1415510:intergenic 20.0%
!! CAGATTAAGTATTAATTCAT+GGG - tig0024240:7434-7453 Msa1415510:intergenic 20.0%
!! ACAGATTAAGTATTAATTCA+TGG - tig0024240:7435-7454 Msa1415510:intergenic 20.0%
!! ATACTTAATCTGTATTAATG+TGG + tig0024240:7442-7461 Msa1415510:intron 20.0%
!! AATTGTTTACATTGAAAATG+AGG - tig0024240:7662-7681 Msa1415510:intergenic 20.0%
!!! TTAAAAGTGCAATAATATGA+TGG - tig0024240:7868-7887 Msa1415510:intergenic 20.0%
!! ATAATAATGTCAGTTGTATT+TGG - tig0024240:8125-8144 Msa1415510:intergenic 20.0%
!!! AACAAAGTCAATTATTTTGA+AGG - tig0024240:8230-8249 Msa1415510:intergenic 20.0%
!! AGATTTGACAAAAATAAAGA+AGG - tig0024240:8296-8315 Msa1415510:intergenic 20.0%
!!! ATAGTTTTAAGAGCTATTTA+TGG - tig0024240:8401-8420 Msa1415510:intergenic 20.0%
!!! ACATTGGAATTTAAAATCTT+CGG + tig0024240:8568-8587 Msa1415510:three_prime_UTR 20.0%
! TTGACATTTAAAAACTAGTG+AGG + tig0024240:4481-4500 Msa1415510:five_prime_UTR 25.0%
!!! TGTTGTTTTTTTGTTTACAG+GGG + tig0024240:4915-4934 Msa1415510:intron 25.0%
! ATCATGATACTAATATGTGT+CGG + tig0024240:5153-5172 Msa1415510:intron 25.0%
! AATTATAGATCTTCTTGTTG+AGG - tig0024240:5384-5403 Msa1415510:intergenic 25.0%
! TAATAACTTACTAAGGATAG+GGG - tig0024240:5411-5430 Msa1415510:intergenic 25.0%
!! TTCGTTTTATATTTCCATCT+TGG + tig0024240:5434-5453 Msa1415510:intron 25.0%
! TATGACAAGAAAAGAAACTA+AGG - tig0024240:6074-6093 Msa1415510:intergenic 25.0%
! CACCATGTTATGTTATTAAT+CGG + tig0024240:6458-6477 Msa1415510:intron 25.0%
! AACCGATTAATAACATAACA+TGG - tig0024240:6463-6482 Msa1415510:intergenic 25.0%
! GTTATGTTATTAATCGGTTA+AGG + tig0024240:6464-6483 Msa1415510:intron 25.0%
!! AATTTTTCATGCATACATGA+AGG - tig0024240:7024-7043 Msa1415510:intergenic 25.0%
! TGCATGAAAAATTGATCATA+TGG + tig0024240:7031-7050 Msa1415510:intron 25.0%
! CAAACATTTCATTTACATAC+AGG + tig0024240:7173-7192 Msa1415510:CDS 25.0%
!! AGAAGGTATATAATTAACCA+TGG - tig0024240:7218-7237 Msa1415510:intergenic 25.0%
! AATCAATTCACTCACAATTA+AGG - tig0024240:7397-7416 Msa1415510:intergenic 25.0%
!!! AAAATACTTTGCTCTTGTTT+TGG + tig0024240:7475-7494 Msa1415510:intron 25.0%
! ATATAATATATAGTTCCAGC+AGG - tig0024240:7700-7719 Msa1415510:intergenic 25.0%
!! GGATTTTCAATCATTATCTT+CGG + tig0024240:7826-7845 Msa1415510:CDS 25.0%
! AAAATGTCAGATTTCTTGAA+TGG - tig0024240:7925-7944 Msa1415510:intergenic 25.0%
! TGAATATAATTGCTTGACAT+AGG + tig0024240:7948-7967 Msa1415510:intron 25.0%
TATATGGATGATGTTTGTGT+TGG - tig0024240:4552-4571 Msa1415510:intergenic 30.0%
AACAAGTAGAGAGTGATATA+TGG - tig0024240:4568-4587 Msa1415510:intergenic 30.0%
!!! TTCCCACATTTTGATTCTAA+TGG + tig0024240:4595-4614 Msa1415510:exon 30.0%
CTCCATTAGAATCAAAATGT+GGG - tig0024240:4600-4619 Msa1415510:intergenic 30.0%
ACTCCATTAGAATCAAAATG+TGG - tig0024240:4601-4620 Msa1415510:intergenic 30.0%
!! TTAAGTCAGAACGGATTAAA+CGG - tig0024240:4866-4885 Msa1415510:intergenic 30.0%
!!! ACGGAATTTTTAAGTCAGAA+CGG - tig0024240:4875-4894 Msa1415510:intergenic 30.0%
GTAATCATATGTGTTAGTGT+CGG + tig0024240:5130-5149 Msa1415510:intron 30.0%
! TTTTTGTCCTTTTGATATGC+AGG + tig0024240:5332-5351 Msa1415510:intron 30.0%
!! AAAAGTACCTGCATATCAAA+AGG - tig0024240:5342-5361 Msa1415510:intergenic 30.0%
TAAGATACAAGGATAAGACA+TGG - tig0024240:5479-5498 Msa1415510:intergenic 30.0%
TGTATCTTCATGTGCTAAAA+AGG + tig0024240:5515-5534 Msa1415510:intron 30.0%
ATGTGCTAAAAAGGACATTA+TGG + tig0024240:5524-5543 Msa1415510:intron 30.0%
TAAGCAATCATCATGGTTTA+GGG - tig0024240:6235-6254 Msa1415510:intergenic 30.0%
TTAAGCAATCATCATGGTTT+AGG - tig0024240:6236-6255 Msa1415510:intergenic 30.0%
AACCATGATGATTGCTTAAT+AGG + tig0024240:6237-6256 Msa1415510:intron 30.0%
!! GCGAATTTTGAGTAATTCAA+GGG - tig0024240:6264-6283 Msa1415510:intergenic 30.0%
!! TGCGAATTTTGAGTAATTCA+AGG - tig0024240:6265-6284 Msa1415510:intergenic 30.0%
!!! TTTTTTTTAAGAAACCGACC+AGG - tig0024240:6310-6329 Msa1415510:intergenic 30.0%
AAAAAAAAGTTAGACCTGGT+TGG + tig0024240:6331-6350 Msa1415510:intron 30.0%
TATAGCTTAAAAAACCAACC+AGG - tig0024240:6348-6367 Msa1415510:intergenic 30.0%
!! AAGTTTTATGTCACCTTTGA+TGG - tig0024240:6746-6765 Msa1415510:intergenic 30.0%
TAAGAAGTTACCAAGAACAA+CGG - tig0024240:6927-6946 Msa1415510:intergenic 30.0%
GAAAAATTGATCATATGGAG+AGG + tig0024240:7036-7055 Msa1415510:intron 30.0%
!! TTTTGTTTGTGACACTTTTC+AGG + tig0024240:7085-7104 Msa1415510:intron 30.0%
TATCTATTCAAAGAAAGCCA+TGG + tig0024240:7198-7217 Msa1415510:CDS 30.0%
! ATATTTGCTAGGAATGAAGT+TGG - tig0024240:7244-7263 Msa1415510:intergenic 30.0%
ATTTGATCCCATAGATTGAA+GGG + tig0024240:7522-7541 Msa1415510:intron 30.0%
ATTGAAAATGAGGATTTACC+TGG - tig0024240:7652-7671 Msa1415510:intergenic 30.0%
! TTGTTTTCTGAATGAACAAG+GGG - tig0024240:8321-8340 Msa1415510:intergenic 30.0%
!! CTTGTTTTCTGAATGAACAA+GGG - tig0024240:8322-8341 Msa1415510:intergenic 30.0%
AGAGCTATTTATGGCAATAA+TGG - tig0024240:8392-8411 Msa1415510:intergenic 30.0%
ACTAAGAGGTTTATATGTCT+TGG - tig0024240:8511-8530 Msa1415510:intergenic 30.0%
AGACATATAAACCTCTTAGT+TGG + tig0024240:8511-8530 Msa1415510:three_prime_UTR 30.0%
TATTTGCTCCAAAGAAGAGA+CGG + tig0024240:4507-4526 Msa1415510:five_prime_UTR 35.0%
! TACTTGCTAAAGAATCCAAC+CGG - tig0024240:4954-4973 Msa1415510:intergenic 35.0%
TGGATTCTTTAGCAAGTATC+CGG + tig0024240:4956-4975 Msa1415510:intron 35.0%
ACCAAGTGAAGAAGAAAAAC+CGG - tig0024240:4991-5010 Msa1415510:intergenic 35.0%
TGTCTGTATCAGTGTTTCAT+CGG - tig0024240:5022-5041 Msa1415510:intergenic 35.0%
TCGGTTATCCATTTATTGGT+GGG + tig0024240:6138-6157 Msa1415510:CDS 35.0%
ATCATGGTTTAGGGGATTAT+GGG - tig0024240:6226-6245 Msa1415510:intergenic 35.0%
AAGCAATCATCATGGTTTAG+GGG - tig0024240:6234-6253 Msa1415510:intergenic 35.0%
GACCTATTAAGCAATCATCA+TGG - tig0024240:6242-6261 Msa1415510:intergenic 35.0%
CAAACATTAGAAGTTAGACC+TGG + tig0024240:6289-6308 Msa1415510:intron 35.0%
TTCAGAATTGTTCAACCCAT+CGG - tig0024240:6394-6413 Msa1415510:intergenic 35.0%
! ATGGGTTGAACAATTCTGAA+GGG + tig0024240:6394-6413 Msa1415510:intron 35.0%
ACATGGTGAATTCAGAAAAG+TGG - tig0024240:6446-6465 Msa1415510:intergenic 35.0%
TAAACTAGTAGCGTCTCAAA+AGG - tig0024240:6507-6526 Msa1415510:intergenic 35.0%
TTGTTTGTGTAGCCAATAGA+CGG + tig0024240:6619-6638 Msa1415510:intron 35.0%
TCTTTCACACATACCATCAA+AGG + tig0024240:6730-6749 Msa1415510:CDS 35.0%
AATCAATTCCCATCACTCTA+TGG + tig0024240:6888-6907 Msa1415510:CDS 35.0%
AAGAAGTTACCAAGAACAAC+GGG - tig0024240:6926-6945 Msa1415510:intergenic 35.0%
ACATGAAGGATTGTTGTAAG+TGG - tig0024240:7010-7029 Msa1415510:intergenic 35.0%
ATGGAGAGGAATTTAGTAAC+TGG + tig0024240:7050-7069 Msa1415510:intron 35.0%
! TAGAGCAATGATGGAAATGT+AGG - tig0024240:7355-7374 Msa1415510:intergenic 35.0%
AATTCACTCACAATTAAGGC+CGG - tig0024240:7393-7412 Msa1415510:intergenic 35.0%
GATTTGATCCCATAGATTGA+AGG + tig0024240:7521-7540 Msa1415510:intron 35.0%
TGCAATTGCTAAAGTAGGTT+TGG + tig0024240:7574-7593 Msa1415510:CDS 35.0%
AATTCGTATCAGATCTCTTC+TGG + tig0024240:7600-7619 Msa1415510:CDS 35.0%
ATTCGTATCAGATCTCTTCT+GGG + tig0024240:7601-7620 Msa1415510:CDS 35.0%
! TACCTACATTTTTCATTGCC+AGG + tig0024240:7726-7745 Msa1415510:intron 35.0%
CTCAAACGTGTATTTGTCAT+TGG + tig0024240:7805-7824 Msa1415510:CDS 35.0%
CTTGCTGAGAAGAAAAAGAA+AGG - tig0024240:8148-8167 Msa1415510:intergenic 35.0%
!!! CCTTGTTTTCTGAATGAACA+AGG - tig0024240:8323-8342 Msa1415510:intergenic 35.0%
CCTTGTTCATTCAGAAAACA+AGG + tig0024240:8320-8339 Msa1415510:three_prime_UTR 35.0%
AATGTGCTTAGTTCATGAGA+TGG - tig0024240:8553-8572 Msa1415510:intergenic 35.0%
ATCTCATGAACTAAGCACAT+TGG + tig0024240:8552-8571 Msa1415510:three_prime_UTR 35.0%
!! GATGAAGTTTGTTGAGACGA+GGG - tig0024240:4661-4680 Msa1415510:intergenic 40.0%
! AACTGATCCGATCGATTTCA+CGG - tig0024240:4717-4736 Msa1415510:intergenic 40.0%
GAAGTTGTCTTCCAAAGACA+AGG - tig0024240:4754-4773 Msa1415510:intergenic 40.0%
!! ACACCACTTTTCTTAAGAGC+CGG - tig0024240:4794-4813 Msa1415510:intergenic 40.0%
TAGTGAGTACAGTTACACGA+CGG - tig0024240:4894-4913 Msa1415510:intergenic 40.0%
!! TTTTGTTTACAGGGGAGAGA+AGG + tig0024240:4923-4942 Msa1415510:intron 40.0%
!! ACCGGTTTTTCTTCTTCACT+TGG + tig0024240:4987-5006 Msa1415510:intron 40.0%
! TTAGGTATTGTAGCCGTGTT+CGG - tig0024240:5182-5201 Msa1415510:intergenic 40.0%
ACAAACACAGACACTCTCTT+AGG - tig0024240:5200-5219 Msa1415510:intergenic 40.0%
CATGGAATACATGAACGAAC+AGG - tig0024240:5461-5480 Msa1415510:intergenic 40.0%
!! CGTGTCGGTTATCCATTTAT+TGG + tig0024240:6134-6153 Msa1415510:CDS 40.0%
GTCGGTTATCCATTTATTGG+TGG + tig0024240:6137-6156 Msa1415510:CDS 40.0%
TATCCATTTATTGGTGGGAG+TGG + tig0024240:6143-6162 Msa1415510:CDS 40.0%
AAACCACTCCCACCAATAAA+TGG - tig0024240:6149-6168 Msa1415510:intergenic 40.0%
CATCATGGTTTAGGGGATTA+TGG - tig0024240:6227-6246 Msa1415510:intergenic 40.0%
CATTAGAAGTTAGACCTGGT+CGG + tig0024240:6293-6312 Msa1415510:intron 40.0%
ATCAGAAGTTACGATCCGAT+GGG + tig0024240:6376-6395 Msa1415510:intron 40.0%
!! GATGGGTTGAACAATTCTGA+AGG + tig0024240:6393-6412 Msa1415510:intron 40.0%
TGGTGAATTCAGAAAAGTGG+TGG - tig0024240:6443-6462 Msa1415510:intergenic 40.0%
TAATGCATGACACACAGCTA+CGG - tig0024240:6668-6687 Msa1415510:intergenic 40.0%
GAAGCAGCAGCATTAAAGAA+TGG - tig0024240:6851-6870 Msa1415510:intergenic 40.0%
GCTGCTTCACAATTCATACT+TGG + tig0024240:6863-6882 Msa1415510:CDS 40.0%
TGACTGAGCTCTCATTCAAT+TGG + tig0024240:7125-7144 Msa1415510:CDS 40.0%
AGGAATGAAGTTGGAGAAGA+AGG - tig0024240:7235-7254 Msa1415510:intergenic 40.0%
ACTCTTTGTGCAGACTGATA+TGG + tig0024240:7311-7330 Msa1415510:intron 40.0%
GGAAATGTAGGCATAGACAT+TGG - tig0024240:7343-7362 Msa1415510:intergenic 40.0%
GCAGACAATTAGAGCAATGA+TGG - tig0024240:7364-7383 Msa1415510:intergenic 40.0%
TCTAATTGTCTGCATACCAC+CGG + tig0024240:7371-7390 Msa1415510:CDS 40.0%
GCTGATGCAATTGCTAAAGT+AGG + tig0024240:7569-7588 Msa1415510:CDS 40.0%
! GTTTTACCATCTCTACAACC+AGG + tig0024240:7631-7650 Msa1415510:CDS 40.0%
GATTTACCTGGTTGTAGAGA+TGG - tig0024240:7640-7659 Msa1415510:intergenic 40.0%
TTGGATGATATTAAGCCTGC+TGG + tig0024240:7682-7701 Msa1415510:intron 40.0%
CACCTGGCAATGAAAAATGT+AGG - tig0024240:7731-7750 Msa1415510:intergenic 40.0%
! CTACATTTTTCATTGCCAGG+TGG + tig0024240:7729-7748 Msa1415510:intron 40.0%
AACAAGATTTCCACCCAAAC+TGG + tig0024240:7972-7991 Msa1415510:CDS 40.0%
ATTTCCACCCAAACTGGTAT+CGG + tig0024240:7978-7997 Msa1415510:CDS 40.0%
ACACACATGAATGTAGTCTC+TGG + tig0024240:8466-8485 Msa1415510:three_prime_UTR 40.0%
AGACTCAACAACCAACTAAG+AGG - tig0024240:8525-8544 Msa1415510:intergenic 40.0%
CTCGTTAACCGTCTCTTCTT+TGG - tig0024240:4518-4537 Msa1415510:intergenic 45.0%
! GATGTTTGTGTTGGTACCTG+TGG - tig0024240:4543-4562 Msa1415510:intergenic 45.0%
!! AAGTTTGTTGAGACGAGGGA+GGG - tig0024240:4657-4676 Msa1415510:intergenic 45.0%
!! CGATGAAGTTTGTTGAGACG+AGG - tig0024240:4662-4681 Msa1415510:intergenic 45.0%
ATCCTCTCCGTGAAATCGAT+CGG + tig0024240:4707-4726 Msa1415510:CDS 45.0%
TCGATCGGATCAGTTTCTGA+TGG + tig0024240:4722-4741 Msa1415510:CDS 45.0%
ATCGGATCAGTTTCTGATGG+CGG + tig0024240:4725-4744 Msa1415510:CDS 45.0%
!! TCACCGGCTCTTAAGAAAAG+TGG + tig0024240:4788-4807 Msa1415510:CDS 45.0%
AAGTATCCGGCTCTTACTAC+CGG + tig0024240:4969-4988 Msa1415510:intron 45.0%
GAAAAACCGGTAGTAAGAGC+CGG - tig0024240:4978-4997 Msa1415510:intergenic 45.0%
TAAACCACATCGTGTGTGAG+TGG + tig0024240:5279-5298 Msa1415510:intron 45.0%
ATGAACGAACAGGACCAAGA+TGG - tig0024240:5451-5470 Msa1415510:intergenic 45.0%
TGGTTTACTGTTTGGTCAGC+TGG + tig0024240:6163-6182 Msa1415510:CDS 45.0%
CATCAGAAGTTACGATCCGA+TGG + tig0024240:6375-6394 Msa1415510:intron 45.0%
AATGCATGACACACAGCTAC+GGG - tig0024240:6667-6686 Msa1415510:intergenic 45.0%
GTAGCTGTGTGTCATGCATT+AGG + tig0024240:6667-6686 Msa1415510:CDS 45.0%
ATGAGACATTGCTGGTCACA+TGG - tig0024240:6693-6712 Msa1415510:intergenic 45.0%
TGCAGCAAATGAGACATTGC+TGG - tig0024240:6701-6720 Msa1415510:intergenic 45.0%
AGTGAGAGCCATAGAGTGAT+GGG - tig0024240:6899-6918 Msa1415510:intergenic 45.0%
AAGTGAGAGCCATAGAGTGA+TGG - tig0024240:6900-6919 Msa1415510:intergenic 45.0%
!!! ACACTTTTCAGGTGTGTCGT+TGG + tig0024240:7096-7115 Msa1415510:intron 45.0%
GAGCTCTCATTCAATTGGCT+CGG + tig0024240:7130-7149 Msa1415510:CDS 45.0%
GTGTAGGCCCTTCAATCTAT+GGG - tig0024240:7532-7551 Msa1415510:intergenic 45.0%
AGTGTAGGCCCTTCAATCTA+TGG - tig0024240:7533-7552 Msa1415510:intergenic 45.0%
GTATCAGATCTCTTCTGGGT+TGG + tig0024240:7605-7624 Msa1415510:CDS 45.0%
ACGTTTGAGTACGTTGCCAA+CGG - tig0024240:7794-7813 Msa1415510:intergenic 45.0%
!! CTCGATCTTGGCTTTGATGA+AGG - tig0024240:8039-8058 Msa1415510:intergenic 45.0%
CTTCATCAAAGCCAAGATCG+AGG + tig0024240:8037-8056 Msa1415510:CDS 45.0%
CAGCAAGCAAAAGCAGCATA+AGG + tig0024240:8161-8180 Msa1415510:intron 45.0%
!!! ATTTTTCTAATTATTATATA+TGG - tig0024240:5060-5079 Msa1415510:intergenic 5.0%
AGACGGTTAACGAGAACCAC+AGG + tig0024240:4524-4543 Msa1415510:five_prime_UTR 50.0%
!! GAAGTTTGTTGAGACGAGGG+AGG - tig0024240:4658-4677 Msa1415510:intergenic 50.0%
CATCGTGAACACCTCACCAA+TGG + tig0024240:4677-4696 Msa1415510:CDS 50.0%
! GATCGATTTCACGGAGAGGA+TGG - tig0024240:4708-4727 Msa1415510:intergenic 50.0%
! ATCCGATCGATTTCACGGAG+AGG - tig0024240:4712-4731 Msa1415510:intergenic 50.0%
TCGGATCAGTTTCTGATGGC+GGG + tig0024240:4726-4745 Msa1415510:CDS 50.0%
TCGTCCTGAACTCTGTTCAC+CGG + tig0024240:4772-4791 Msa1415510:CDS 50.0%
TATGTGTCGGACACCGAACA+CGG + tig0024240:5166-5185 Msa1415510:intron 50.0%
ACAACCACTCACACACGATG+TGG - tig0024240:5286-5305 Msa1415510:intergenic 50.0%
GTGTATGTGCAGCTTCGTGT+CGG + tig0024240:6119-6138 Msa1415510:intron 50.0%
GGTGGGAGTGGTTTACTGTT+TGG + tig0024240:6155-6174 Msa1415510:CDS 50.0%
TAAGCGCGCAGTAAGTCTCT+CGG + tig0024240:6200-6219 Msa1415510:intron 50.0%
TTCAGCTGGTTGCCGTCTAT+TGG - tig0024240:6634-6653 Msa1415510:intergenic 50.0%
TCACTTGCTCCCGTTGTTCT+TGG + tig0024240:6914-6933 Msa1415510:CDS 50.0%
TCACTCACAATTAAGGCCGG+TGG - tig0024240:7390-7409 Msa1415510:intergenic 50.0%
AAGCCGGTCTTCAACAGTGT+AGG - tig0024240:7548-7567 Msa1415510:intergenic 50.0%
AGCAATTGCATCAGCGAAGC+CGG - tig0024240:7564-7583 Msa1415510:intergenic 50.0%
CACTCTCTCCAATGTGTTGG+TGG - tig0024240:7755-7774 Msa1415510:intergenic 50.0%
CACCAACACATTGGAGAGAG+TGG + tig0024240:7753-7772 Msa1415510:CDS 50.0%
AGCCACTCTCTCCAATGTGT+TGG - tig0024240:7758-7777 Msa1415510:intergenic 50.0%
AGTTCCGATACCAGTTTGGG+TGG - tig0024240:7985-8004 Msa1415510:intergenic 50.0%
GGCAGTTCCGATACCAGTTT+GGG - tig0024240:7988-8007 Msa1415510:intergenic 50.0%
TGGCAGTTCCGATACCAGTT+TGG - tig0024240:7989-8008 Msa1415510:intergenic 50.0%
GGAACTGCCATTGCAATTGC+TGG + tig0024240:7999-8018 Msa1415510:CDS 50.0%
TGCCATTGCAATTGCTGGAG+TGG + tig0024240:8004-8023 Msa1415510:CDS 50.0%
TGCCACTCCAGCAATTGCAA+TGG - tig0024240:8009-8028 Msa1415510:intergenic 50.0%
TCGCTTCTCTTCCTCGATCT+TGG - tig0024240:8051-8070 Msa1415510:intergenic 50.0%
! AGCAGCATAAGGCGTCAACT+TGG + tig0024240:8172-8191 Msa1415510:exon 50.0%
! AGCATAAGGCGTCAACTTGG+AGG + tig0024240:8175-8194 Msa1415510:exon 50.0%
TTTGTTGAGACGAGGGAGGG+AGG - tig0024240:4654-4673 Msa1415510:intergenic 55.0%
!! GATGGCGGGAACCTTGTCTT+TGG + tig0024240:4740-4759 Msa1415510:CDS 55.0%
AGAGCCGGTGAACAGAGTTC+AGG - tig0024240:4779-4798 Msa1415510:intergenic 55.0%
ATTAAACGGACCTCACCCGG+CGG - tig0024240:4852-4871 Msa1415510:intergenic 55.0%
CGGATTAAACGGACCTCACC+CGG - tig0024240:4855-4874 Msa1415510:intergenic 55.0%
TGTTTGGTCAGCTGGACCGT+GGG + tig0024240:6171-6190 Msa1415510:CDS 55.0%
GACTTACTGCGCGCTTAGGA+AGG - tig0024240:6197-6216 Msa1415510:intergenic 55.0%
GAGAGACTTACTGCGCGCTT+AGG - tig0024240:6201-6220 Msa1415510:intergenic 55.0%
AAGGGCCTGTTGAGCAATGC+TGG + tig0024240:6412-6431 Msa1415510:intron 55.0%
CGTAGCCAGCATTGCTCAAC+AGG - tig0024240:6420-6439 Msa1415510:intergenic 55.0%
CGGGAATCAGCAACTTCAGC+TGG - tig0024240:6648-6667 Msa1415510:intergenic 55.0%
GGGCCTACACTGTTGAAGAC+CGG + tig0024240:7542-7561 Msa1415510:CDS 55.0%
TTGCCAACGGCATGAGTGAG+AGG - tig0024240:7781-7800 Msa1415510:intergenic 55.0%
!! GGATGGAAGCGCCATTGGTG+AGG - tig0024240:4691-4710 Msa1415510:intergenic 60.0%
!! GGAGAGGATGGAAGCGCCAT+TGG - tig0024240:4696-4715 Msa1415510:intergenic 60.0%
ACCTCACCCGGCGGAATCAT+CGG - tig0024240:4843-4862 Msa1415510:intergenic 60.0%
CAGGGGAGAGAAGGTTGCTC+CGG + tig0024240:4932-4951 Msa1415510:intron 60.0%
GGAGAGAAGGTTGCTCCGGT+TGG + tig0024240:4936-4955 Msa1415510:intron 60.0%
CTGTTTGGTCAGCTGGACCG+TGG + tig0024240:6170-6189 Msa1415510:CDS 60.0%
!! CCAATGTGTTGGTGGCCACC+TGG - tig0024240:7747-7766 Msa1415510:intergenic 60.0%
CCAGGTGGCCACCAACACAT+TGG + tig0024240:7744-7763 Msa1415510:intron 60.0%
GCTCCTCTCACTCATGCCGT+TGG + tig0024240:7775-7794 Msa1415510:CDS 60.0%
! AGGGAGGGAGGAGAGTGTGG+TGG - tig0024240:4642-4661 Msa1415510:intergenic 65.0%
ACGAGGGAGGGAGGAGAGTG+TGG - tig0024240:4645-4664 Msa1415510:intergenic 65.0%
TGCGCGCTTAGGAAGGCCCA+CGG - tig0024240:6190-6209 Msa1415510:intergenic 65.0%
TCATCGGCAGCGGCGAGGCA+AGG - tig0024240:4827-4846 Msa1415510:intergenic 70.0%
CGGAATCATCGGCAGCGGCG+AGG - tig0024240:4832-4851 Msa1415510:intergenic 70.0%
GCCGCTGCCGATGATTCCGC+CGG + tig0024240:4833-4852 Msa1415510:CDS 70.0%
CCCGGCGGAATCATCGGCAG+CGG - tig0024240:4837-4856 Msa1415510:intergenic 70.0%
CCGCTGCCGATGATTCCGCC+GGG + tig0024240:4834-4853 Msa1415510:CDS 70.0%
GCCGATGATTCCGCCGGGTG+AGG + tig0024240:4839-4858 Msa1415510:intron 70.0%
CAGCGGCGAGGCAAGGACGG+AGG - tig0024240:4820-4839 Msa1415510:intergenic 75.0%
CGGCAGCGGCGAGGCAAGGA+CGG - tig0024240:4823-4842 Msa1415510:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0024240 gene 4467 8602 4467 ID=Msa1415510;Name=Msa1415510
tig0024240 mRNA 4467 8602 4467 ID=Msa1415510-mRNA-1;Parent=Msa1415510;Name=Msa1415510-mRNA-1;_AED=0.09;_eAED=0.09;_QI=147|0.9|1|1|1|1|11|421|376
tig0024240 exon 4467 4855 4467 ID=Msa1415510-mRNA-1:exon:22462;Parent=Msa1415510-mRNA-1
tig0024240 exon 5354 5419 5354 ID=Msa1415510-mRNA-1:exon:22463;Parent=Msa1415510-mRNA-1
tig0024240 exon 6131 6209 6131 ID=Msa1415510-mRNA-1:exon:22464;Parent=Msa1415510-mRNA-1
tig0024240 exon 6631 6751 6631 ID=Msa1415510-mRNA-1:exon:22465;Parent=Msa1415510-mRNA-1
tig0024240 exon 6840 6935 6840 ID=Msa1415510-mRNA-1:exon:22466;Parent=Msa1415510-mRNA-1
tig0024240 exon 7107 7219 7107 ID=Msa1415510-mRNA-1:exon:22467;Parent=Msa1415510-mRNA-1
tig0024240 exon 7324 7401 7324 ID=Msa1415510-mRNA-1:exon:22468;Parent=Msa1415510-mRNA-1
tig0024240 exon 7536 7652 7536 ID=Msa1415510-mRNA-1:exon:22469;Parent=Msa1415510-mRNA-1
tig0024240 exon 7748 7847 7748 ID=Msa1415510-mRNA-1:exon:22470;Parent=Msa1415510-mRNA-1
tig0024240 exon 7970 8070 7970 ID=Msa1415510-mRNA-1:exon:22471;Parent=Msa1415510-mRNA-1
tig0024240 exon 8164 8602 8164 ID=Msa1415510-mRNA-1:exon:22472;Parent=Msa1415510-mRNA-1
tig0024240 five_prime_UTR 4467 4613 4467 ID=Msa1415510-mRNA-1:five_prime_utr;Parent=Msa1415510-mRNA-1
tig0024240 CDS 4614 4855 4614 ID=Msa1415510-mRNA-1:cds;Parent=Msa1415510-mRNA-1
tig0024240 CDS 5354 5419 5354 ID=Msa1415510-mRNA-1:cds;Parent=Msa1415510-mRNA-1
tig0024240 CDS 6131 6209 6131 ID=Msa1415510-mRNA-1:cds;Parent=Msa1415510-mRNA-1
tig0024240 CDS 6631 6751 6631 ID=Msa1415510-mRNA-1:cds;Parent=Msa1415510-mRNA-1
tig0024240 CDS 6840 6935 6840 ID=Msa1415510-mRNA-1:cds;Parent=Msa1415510-mRNA-1
tig0024240 CDS 7107 7219 7107 ID=Msa1415510-mRNA-1:cds;Parent=Msa1415510-mRNA-1
tig0024240 CDS 7324 7401 7324 ID=Msa1415510-mRNA-1:cds;Parent=Msa1415510-mRNA-1
tig0024240 CDS 7536 7652 7536 ID=Msa1415510-mRNA-1:cds;Parent=Msa1415510-mRNA-1
tig0024240 CDS 7748 7847 7748 ID=Msa1415510-mRNA-1:cds;Parent=Msa1415510-mRNA-1
tig0024240 CDS 7970 8070 7970 ID=Msa1415510-mRNA-1:cds;Parent=Msa1415510-mRNA-1
tig0024240 CDS 8164 8181 8164 ID=Msa1415510-mRNA-1:cds;Parent=Msa1415510-mRNA-1
tig0024240 three_prime_UTR 8182 8602 8182 ID=Msa1415510-mRNA-1:three_prime_utr;Parent=Msa1415510-mRNA-1
Gene Sequence

>Msa1415510

ATGGAGTCACGAGTGTTATCACGCGCCACCACACTCTCCTCCCTCCCTCGTCTCAACAAACTTCATCGTGAACACCTCACCAATGGCGCTTCCATCCTCTCCGTGAAATCGATCGGATCAGTTTCTGATGGCGGGAACCTTGTCTTTGGAAGACAACTTCGTCCTGAACTCTGTTCACCGGCTCTTAAGAAAAGTGGTGTACTCCTCCGTCCTTGCCTCGCCGCTGCCGATGATTCCGCCGGGTACTTTTTGAATGTGATTTTCAACATCCTCAACAAGAAGATCTATAATTATTTCCCCTATCCTTACTTCGTGTCGGTTATCCATTTATTGGTGGGAGTGGTTTACTGTTTGGTCAGCTGGACCGTGGGCCTTCCTAAGCGCGCACCAATAGACGGCAACCAGCTGAAGTTGCTGATTCCCGTAGCTGTGTGTCATGCATTAGGCCATGTGACCAGCAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACACATACCATCAAAGCTCTTGAGCCATTCTTTAATGCTGCTGCTTCACAATTCATACTTGGACAATCAATTCCCATCACTCTATGGCTCTCACTTGCTCCCGTTGTTCTTGGTGTGTCGTTGGCATCATTGACTGAGCTCTCATTCAATTGGCTCGGCTTCATAAGTGCTATGATTTCAAACATTTCATTTACATACAGGAGTATCTATTCAAAGAAAGCCATGACTGATATGGACAGTACCAATGTCTATGCCTACATTTCCATCATTGCTCTAATTGTCTGCATACCACCGGCCTTAATTATTGAAGGGCCTACACTGTTGAAGACCGGCTTCGCTGATGCAATTGCTAAAGTAGGTTTGGTCAAATTCGTATCAGATCTCTTCTGGGTTGGTATGTTTTACCATCTCTACAACCAGGTGGCCACCAACACATTGGAGAGAGTGGCTCCTCTCACTCATGCCGTTGGCAACGTACTCAAACGTGTATTTGTCATTGGATTTTCAATCATTATCTTCGGTAACAAGATTTCCACCCAAACTGGTATCGGAACTGCCATTGCAATTGCTGGAGTGGCACTCTACTCCTTCATCAAAGCCAAGATCGAGGAAGAGAAGCGACAAGCAAAAGCAGCATAA

Protein sequence

>Msa1415510

MESRVLSRATTLSSLPRLNKLHREHLTNGASILSVKSIGSVSDGGNLVFGRQLRPELCSPALKKSGVLLRPCLAAADDSAGYFLNVIFNILNKKIYNYFPYPYFVSVIHLLVGVVYCLVSWTVGLPKRAPIDGNQLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQSIPITLWLSLAPVVLGVSLASLTELSFNWLGFISAMISNISFTYRSIYSKKAMTDMDSTNVYAYISIIALIVCIPPALIIEGPTLLKTGFADAIAKVGLVKFVSDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKRVFVIGFSIIIFGNKISTQTGIGTAIAIAGVALYSFIKAKIEEEKRQAKAA*