AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1150750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1150750 MtrunA17_Chr7g0240531 92.411 224 17 0 1 224 1 224 3.94e-152 421
Msa1150750 MtrunA17_Chr7g0240551 91.964 224 18 0 1 224 1 224 2.33e-151 419
Msa1150750 MtrunA17_Chr7g0240541 87.500 224 28 0 1 224 1 224 3.15e-143 399
Msa1150750 MtrunA17_Chr7g0240561 82.143 224 40 0 1 224 1 224 2.56e-134 376
Msa1150750 MtrunA17_Chr7g0240581 79.911 224 45 0 1 224 1 224 7.91e-134 375
Msa1150750 MtrunA17_Chr7g0240511 81.696 224 36 1 1 224 1 219 5.31e-131 367
Msa1150750 MtrunA17_Chr7g0240521 77.778 225 49 1 1 224 8 232 1.07e-116 332
Msa1150750 MtrunA17_Chr7g0240631 69.507 223 68 0 1 223 1 223 3.34e-116 330
Msa1150750 MtrunA17_Chr7g0240641 69.058 223 69 0 1 223 1 223 2.28e-113 323
Msa1150750 MtrunA17_Chr7g0240681 70.667 225 65 1 1 224 1 225 1.00e-112 322
Msa1150750 MtrunA17_Chr7g0240611 68.161 223 67 1 1 223 1 219 1.50e-107 308
Msa1150750 MtrunA17_Chr4g0008791 63.677 223 81 0 1 223 1 223 7.52e-105 301
Msa1150750 MtrunA17_Chr7g0240691 64.384 219 77 1 6 223 36 254 8.64e-101 293
Msa1150750 MtrunA17_Chr7g0240671 64.251 207 70 1 8 214 5 207 1.13e-93 273
Msa1150750 MtrunA17_Chr4g0008781 60.930 215 82 2 2 215 3 216 4.53e-92 269
Msa1150750 MtrunA17_Chr7g0240651 64.414 222 75 1 1 222 1 218 6.13e-91 266
Msa1150750 MtrunA17_Chr7g0240661 65.421 214 70 1 1 214 1 210 1.79e-88 260
Msa1150750 MtrunA17_Chr6g0483141 48.077 208 106 2 7 213 3 209 1.73e-64 199
Msa1150750 MtrunA17_Chr1g0196771 46.364 220 113 3 6 222 2 219 2.26e-62 194
Msa1150750 MtrunA17_Chr3g0132581 46.818 220 115 2 5 223 3 221 1.02e-60 189
Msa1150750 MtrunA17_Chr8g0379581 43.779 217 120 2 4 219 2 217 8.79e-60 187
Msa1150750 MtrunA17_Chr1g0212301 43.119 218 121 2 7 221 3 220 7.88e-57 179
Msa1150750 MtrunA17_Chr8g0379561 43.779 217 119 3 1 216 1 215 5.40e-56 177
Msa1150750 MtrunA17_Chr5g0417011 42.342 222 120 3 1 215 1 221 7.55e-55 175
Msa1150750 MtrunA17_Chr1g0196691 42.273 220 124 1 7 223 28 247 3.18e-52 169
Msa1150750 MtrunA17_Chr5g0415411 41.228 228 124 3 1 220 1 226 9.27e-51 164
Msa1150750 MtrunA17_Chr4g0029341 42.056 214 118 3 6 215 3 214 1.14e-50 164
Msa1150750 MtrunA17_Chr1g0196661 40.724 221 127 2 7 224 3 222 2.96e-49 160
Msa1150750 MtrunA17_Chr8g0363751 42.009 219 119 3 5 215 3 221 9.68e-49 159
Msa1150750 MtrunA17_Chr1g0196721 40.183 219 127 2 8 223 3 220 1.18e-48 159
Msa1150750 MtrunA17_Chr1g0196711 38.914 221 131 2 7 224 3 222 9.77e-48 156
Msa1150750 MtrunA17_Chr2g0312771 40.191 209 120 5 6 212 3 208 3.79e-45 150
Msa1150750 MtrunA17_Chr2g0312731 40.777 206 117 5 6 209 3 205 8.34e-45 149
Msa1150750 MtrunA17_Chr3g0107731 43.216 199 108 5 16 212 18 213 1.27e-44 149
Msa1150750 MtrunA17_Chr2g0312751 39.713 209 121 5 6 212 3 208 1.94e-44 148
Msa1150750 MtrunA17_Chr3g0107741 40.758 211 120 5 4 212 6 213 1.20e-42 143
Msa1150750 MtrunA17_Chr2g0312791 41.176 204 116 4 6 207 3 204 5.67e-42 142
Msa1150750 MtrunA17_Chr4g0069471 45.455 187 94 5 3 186 21 202 1.55e-41 140
Msa1150750 MtrunA17_Chr2g0312781 38.278 209 124 5 1 207 15 220 1.84e-41 140
Msa1150750 MtrunA17_Chr8g0357211 40.670 209 114 6 16 218 13 217 2.85e-41 140
Msa1150750 MtrunA17_Chr8g0357241 40.670 209 114 6 16 218 13 217 5.28e-41 139
Msa1150750 MtrunA17_Chr2g0312811 39.151 212 120 7 6 212 3 210 2.10e-39 135
Msa1150750 MtrunA17_Chr2g0312721 37.619 210 124 5 6 212 3 208 3.96e-39 134
Msa1150750 MtrunA17_Chr5g0433801 38.679 212 125 4 3 212 2 210 8.60e-39 133
Msa1150750 MtrunA17_Chr2g0312691 37.037 216 131 4 7 220 4 216 2.73e-36 127
Msa1150750 MtrunA17_Chr8g0391631 46.795 156 73 4 7 153 21 175 4.53e-36 125
Msa1150750 MtrunA17_Chr2g0312681 36.058 208 128 4 7 212 4 208 2.83e-35 124
Msa1150750 MtrunA17_Chr2g0312711 38.743 191 111 4 16 204 13 199 5.24e-30 110
Msa1150750 MtrunA17_Chr2g0313561 43.077 65 36 1 51 114 2 66 1.30e-13 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1150750 AT3G09270.1 53.125 224 101 4 3 223 2 224 4.67e-77 231
Msa1150750 AT2G29420.1 47.945 219 112 2 3 220 5 222 1.17e-71 218
Msa1150750 AT2G29490.1 49.048 210 102 4 1 207 1 208 1.22e-60 190
Msa1150750 AT2G29450.1 47.826 207 106 2 3 207 2 208 2.09e-58 184
Msa1150750 AT2G29480.1 47.847 209 106 3 1 207 1 208 7.95e-58 182
Msa1150750 AT2G29460.1 44.595 222 120 3 1 220 1 221 5.88e-56 178
Msa1150750 AT2G29440.1 45.933 209 109 4 1 207 1 207 2.72e-54 174
Msa1150750 AT2G29470.1 45.024 211 110 5 1 207 1 209 2.62e-53 171
Msa1150750 AT1G10370.1 41.629 221 120 3 1 214 1 219 8.36e-50 162
Msa1150750 AT1G69930.1 36.283 226 138 2 2 221 7 232 1.29e-48 159
Msa1150750 AT5G62480.1 41.284 218 117 4 8 215 9 225 2.65e-48 159
Msa1150750 AT1G59700.1 44.037 218 114 4 5 214 4 221 2.78e-48 159
Msa1150750 AT1G27130.1 38.667 225 129 4 1 217 1 224 6.86e-47 155
Msa1150750 AT1G59670.1 41.204 216 119 3 5 212 4 219 1.41e-46 154
Msa1150750 AT1G78380.1 41.827 208 116 4 7 212 4 208 1.30e-45 151
Msa1150750 AT1G74590.1 37.727 220 130 3 1 214 1 219 1.65e-45 151
Msa1150750 AT1G10360.1 37.037 216 129 2 6 214 4 219 1.28e-44 149
Msa1150750 AT1G17170.1 40.553 217 123 5 6 220 3 215 1.96e-44 148
Msa1150750 AT1G78370.1 41.667 204 113 6 16 217 13 212 2.91e-44 148
Msa1150750 AT1G78340.1 43.256 215 114 6 6 216 3 213 3.71e-44 147
Msa1150750 AT1G53680.1 40.094 212 122 4 1 209 1 210 6.60e-43 144
Msa1150750 AT1G27140.1 38.261 230 126 7 1 218 1 226 1.60e-42 144
Msa1150750 AT1G78320.1 39.904 208 120 4 5 210 2 206 1.91e-42 143
Msa1150750 AT1G69920.1 36.404 228 135 4 1 218 26 253 4.08e-41 140
Msa1150750 AT1G17180.1 40.191 209 120 5 6 212 3 208 4.95e-41 139
Msa1150750 AT1G78360.1 41.148 209 117 6 7 212 4 209 6.46e-39 134
Msa1150750 AT3G43800.1 38.164 207 119 6 4 204 2 205 9.54e-38 131
Msa1150750 AT1G17190.1 42.697 178 97 5 16 191 14 188 1.02e-36 128
Msa1150750 AT5G62480.2 32.719 217 111 4 8 215 9 199 1.66e-30 112
Msa1150750 AT5G62480.3 32.719 217 110 4 8 215 9 198 3.45e-30 111
Msa1150750 AT1G78320.2 33.010 206 108 4 6 210 3 179 3.36e-26 100
Msa1150750 AT2G02380.1 26.512 215 139 6 5 207 9 216 9.18e-15 70.9
Msa1150750 AT2G02390.1 26.728 217 140 5 3 207 4 213 2.11e-12 64.7
Msa1150750 AT2G02390.3 26.339 224 139 6 3 207 4 220 1.55e-11 62.4
Msa1150750 AT2G02390.2 37.113 97 57 2 3 96 4 99 3.96e-11 60.5

Find 66 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAAAATAGATCAATTTA+AGG 0.159458 7_4:-34550547 Msa1150750:exon
AAAGAGCCTTGGCACGTTTC+TGG 0.164876 7_4:-34551526 Msa1150750:CDS
TACCTTGTCATCTATGAAAT+TGG 0.177857 7_4:+34551502 None:intergenic
ATATGTACTTGTGAAATTTA+AGG 0.186318 7_4:-34550522 Msa1150750:three_prime_UTR
TGTAATCAAACAACTGATTT+TGG 0.203727 7_4:+34551845 None:intergenic
AATCCTTATTTCAGAGAAAA+TGG 0.232644 7_4:-34550359 Msa1150750:three_prime_UTR
TTGGATGATTGTTGAATTCT+TGG 0.233990 7_4:+34550642 None:intergenic
AATCACAAGGGACTCTGATA+TGG 0.285005 7_4:+34551607 None:intergenic
CTCCTAGGTTAAGAAATTCT+AGG 0.289936 7_4:-34550417 Msa1150750:three_prime_UTR
AGTCCAAATGCTTCTTGTAT+AGG 0.292947 7_4:+34550710 None:intergenic
ACAGGAACTTTCTTGTAAAC+AGG 0.303772 7_4:+34551650 None:intergenic
TTCTTTGGTGGGGAGGATAT+TGG 0.313435 7_4:-34550776 Msa1150750:CDS
TAAGGATCATTAGGCAAGAT+AGG 0.313856 7_4:+34551551 None:intergenic
CTCTACGATGGCATCAAATA+AGG 0.319615 7_4:-34551810 Msa1150750:exon
TGGCTCCAATTGTAAAGCTT+TGG 0.323925 7_4:+34550662 None:intergenic
GAGCTCAAGGACAAATTCTT+TGG 0.339009 7_4:-34550791 Msa1150750:CDS
TTGGTCATTGATTGATTCCT+AGG 0.341347 7_4:+34551864 None:intergenic
TTAAATTTCACAAGTACATA+TGG 0.351466 7_4:+34550524 None:intergenic
CAACAATCATCCAATTGTTA+AGG 0.374730 7_4:-34550633 Msa1150750:CDS
GCCTCCTAGAGAGACCCTTT+TGG 0.417652 7_4:-34550603 Msa1150750:CDS
CCACCTATACAAGAAGCATT+TGG 0.430472 7_4:-34550713 Msa1150750:CDS
AATTTCCAAAGCTTTACAAT+TGG 0.430707 7_4:-34550667 Msa1150750:CDS
ATCTCCACCCTTGTTACAAA+TGG 0.430811 7_4:+34551755 None:intergenic
CAACACCTTGGATTTCTCCT+AGG 0.454718 7_4:-34550432 Msa1150750:three_prime_UTR
TGTATATAAAAGCAAATCCT+AGG 0.472351 7_4:-34551881 Msa1150750:five_prime_UTR
ACCAGTGCTCCAATGGTGTT+CGG 0.478017 7_4:-34550895 Msa1150750:intron
TTATCATTATGAACAAATAC+AGG 0.499212 7_4:+34551632 None:intergenic
TTGAATATATTGATGAGACT+TGG 0.500568 7_4:-34551583 Msa1150750:CDS
ACAAGCTTTCCGAACACCAT+TGG 0.501376 7_4:+34550886 None:intergenic
AATATGAGCAAGAAAAGGTT+GGG 0.503590 7_4:-34551703 Msa1150750:CDS
AAGGATCATTAGGCAAGATA+GGG 0.505915 7_4:+34551552 None:intergenic
GAGCTTTGTAGAATGCCAAA+AGG 0.508352 7_4:+34550588 None:intergenic
CTCAAGGACAAATTCTTTGG+TGG 0.512720 7_4:-34550788 Msa1150750:CDS
CAGGAACTTTCTTGTAAACA+GGG 0.515430 7_4:+34551651 None:intergenic
AAATATGAGCAAGAAAAGGT+TGG 0.516900 7_4:-34551704 Msa1150750:CDS
ATCACAAGGGACTCTGATAT+GGG 0.519485 7_4:+34551608 None:intergenic
CCAAATGCTTCTTGTATAGG+TGG 0.519842 7_4:+34550713 None:intergenic
TCAAGGACAAATTCTTTGGT+GGG 0.523453 7_4:-34550787 Msa1150750:CDS
AGAACGTGAGAAGAGTATTG+AGG 0.526929 7_4:-34550846 Msa1150750:CDS
ATTTCTTGAGAATGAGCTCA+AGG 0.546430 7_4:-34550804 Msa1150750:CDS
ATCAAATAAGGAAGAGGTGA+AGG 0.549693 7_4:-34551798 Msa1150750:CDS
ATACAAATATGAGCAAGAAA+AGG 0.550926 7_4:-34551708 Msa1150750:CDS
GGAGATTGCTCTAAAACTGA+AGG 0.560079 7_4:-34551738 Msa1150750:CDS
TGATCCTTATAAAAGAGCCT+TGG 0.561258 7_4:-34551537 Msa1150750:CDS
AGCTTTGTAGAATGCCAAAA+GGG 0.565015 7_4:+34550589 None:intergenic
GAGTATTGAGGAAACAAAAG+AGG 0.566255 7_4:-34550834 Msa1150750:CDS
TGGAAAGTCCATTTGTAACA+AGG 0.573831 7_4:-34551763 Msa1150750:CDS
CAAGGACAAATTCTTTGGTG+GGG 0.574827 7_4:-34550786 Msa1150750:CDS
GATGGCATCAAATAAGGAAG+AGG 0.575114 7_4:-34551804 Msa1150750:CDS
GGACAAATTCTTTGGTGGGG+AGG 0.579613 7_4:-34550783 Msa1150750:CDS
ATCCTAGAATTTCTTAACCT+AGG 0.580226 7_4:+34550415 None:intergenic
AATGCCAAAAGGGTCTCTCT+AGG 0.585218 7_4:+34550599 None:intergenic
ACTAGATATATGCAACACCT+TGG 0.588775 7_4:-34550444 Msa1150750:three_prime_UTR
ACTGAAATTGTTCACTAGTG+AGG 0.598807 7_4:-34550690 Msa1150750:CDS
CAATATATTCAAGAATCACA+AGG 0.601780 7_4:+34551594 None:intergenic
CAAATGCTTCTTGTATAGGT+GGG 0.601872 7_4:+34550714 None:intergenic
TTGTGAGACCAGTGCTCCAA+TGG 0.602330 7_4:-34550902 Msa1150750:intron
GGAAAGTCCATTTGTAACAA+GGG 0.613221 7_4:-34551762 Msa1150750:CDS
GCCAAAAGGGTCTCTCTAGG+AGG 0.628476 7_4:+34550602 None:intergenic
GTCCAATTTCATAGATGACA+AGG 0.633419 7_4:-34551504 Msa1150750:intron
GAGATTGCTCTAAAACTGAA+GGG 0.636453 7_4:-34551737 Msa1150750:CDS
AAGTCCATTTGTAACAAGGG+TGG 0.642673 7_4:-34551759 Msa1150750:CDS
CTTAACCTAGGAGAAATCCA+AGG 0.645699 7_4:+34550427 None:intergenic
TAATTGATCAAGCTCTACGA+TGG 0.664909 7_4:-34551822 Msa1150750:exon
ATTGGACCAGAAACGTGCCA+AGG 0.673197 7_4:+34551520 None:intergenic
AATATATTCAAGAATCACAA+GGG 0.678725 7_4:+34551595 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTATTTATTTTTTTTA+AGG - chr7_4:34550809-34550828 Msa1150750:CDS 0.0%
!!! TTTATTATTTATTTTTTTTA+AGG - chr7_4:34550809-34550828 Msa1150750:CDS 0.0%
!!! GATAAACAAAATAATTTTTT+TGG - chr7_4:34550933-34550952 Msa1150750:intron 10.0%
!!! ATTTGTTAAAAAAAAACAAT+TGG + chr7_4:34551121-34551140 None:intergenic 10.0%
!!! GATAAACAAAATAATTTTTT+TGG - chr7_4:34550933-34550952 Msa1150750:intron 10.0%
!!! ATTTGTTAAAAAAAAACAAT+TGG + chr7_4:34551121-34551140 None:intergenic 10.0%
!! AAACTAGTAAAAAATAAACT+AGG + chr7_4:34550286-34550305 None:intergenic 15.0%
!!! TGAAACAATTTTTTATCAAA+TGG + chr7_4:34551031-34551050 None:intergenic 15.0%
!!! AAGTTAATTGATTTGTTTTT+AGG + chr7_4:34551251-34551270 None:intergenic 15.0%
!! AAACTAGTAAAAAATAAACT+AGG + chr7_4:34550286-34550305 None:intergenic 15.0%
!!! TGAAACAATTTTTTATCAAA+TGG + chr7_4:34551031-34551050 None:intergenic 15.0%
!!! AAGTTAATTGATTTGTTTTT+AGG + chr7_4:34551251-34551270 None:intergenic 15.0%
!!! GGATTATTTTTCAACAAAAA+CGG + chr7_4:34550323-34550342 None:intergenic 20.0%
!! TTATCATTATGAACAAATAC+AGG + chr7_4:34550601-34550620 None:intergenic 20.0%
!! AATATATTCAAGAATCACAA+GGG + chr7_4:34550638-34550657 None:intergenic 20.0%
!!! TTTTTTTTTGTTGACAACAT+GGG + chr7_4:34550903-34550922 None:intergenic 20.0%
!! TAAAAAAAAACAATTGGACT+CGG + chr7_4:34551115-34551134 None:intergenic 20.0%
!! CTTCAAAATAGATCAATTTA+AGG - chr7_4:34551683-34551702 Msa1150750:CDS 20.0%
!! TTAAATTTCACAAGTACATA+TGG + chr7_4:34551709-34551728 None:intergenic 20.0%
!! ATATGTACTTGTGAAATTTA+AGG - chr7_4:34551708-34551727 Msa1150750:CDS 20.0%
!!! GGATTATTTTTCAACAAAAA+CGG + chr7_4:34550323-34550342 None:intergenic 20.0%
!! TTATCATTATGAACAAATAC+AGG + chr7_4:34550601-34550620 None:intergenic 20.0%
!! AATATATTCAAGAATCACAA+GGG + chr7_4:34550638-34550657 None:intergenic 20.0%
!!! TTTTTTTTTGTTGACAACAT+GGG + chr7_4:34550903-34550922 None:intergenic 20.0%
!! TAAAAAAAAACAATTGGACT+CGG + chr7_4:34551115-34551134 None:intergenic 20.0%
!! CTTCAAAATAGATCAATTTA+AGG - chr7_4:34551683-34551702 Msa1150750:CDS 20.0%
!! TTAAATTTCACAAGTACATA+TGG + chr7_4:34551709-34551728 None:intergenic 20.0%
!! ATATGTACTTGTGAAATTTA+AGG - chr7_4:34551708-34551727 Msa1150750:CDS 20.0%
! TGTATATAAAAGCAAATCCT+AGG - chr7_4:34550349-34550368 Msa1150750:three_prime_UTR 25.0%
!!! TGTAATCAAACAACTGATTT+TGG + chr7_4:34550388-34550407 None:intergenic 25.0%
! ATACAAATATGAGCAAGAAA+AGG - chr7_4:34550522-34550541 Msa1150750:three_prime_UTR 25.0%
! CAATATATTCAAGAATCACA+AGG + chr7_4:34550639-34550658 None:intergenic 25.0%
! TTGAATATATTGATGAGACT+TGG - chr7_4:34550647-34550666 Msa1150750:CDS 25.0%
! ACATCGATAAAAATAGAAGA+GGG + chr7_4:34550761-34550780 None:intergenic 25.0%
! TACATCGATAAAAATAGAAG+AGG + chr7_4:34550762-34550781 None:intergenic 25.0%
! TAAAGTTGGATATTTGAACT+TGG + chr7_4:34550793-34550812 None:intergenic 25.0%
! TATTTAGTGCTAACTAAAGT+TGG + chr7_4:34550840-34550859 None:intergenic 25.0%
!! CTAAGTAAATTTGAGATCTT+AGG - chr7_4:34550865-34550884 Msa1150750:CDS 25.0%
!!! CTTTTTTTTTGTTGACAACA+TGG + chr7_4:34550904-34550923 None:intergenic 25.0%
!! ATGGTACTTTATTTACCTTT+CGG + chr7_4:34551012-34551031 None:intergenic 25.0%
! AAAAAAAAACAATTGGACTC+GGG + chr7_4:34551114-34551133 None:intergenic 25.0%
!!! TGAGAAAGTATCTAACTTAA+AGG - chr7_4:34551207-34551226 Msa1150750:intron 25.0%
!! TTTAGGTTAAATATCACATG+TGG + chr7_4:34551234-34551253 None:intergenic 25.0%
! AATTTCCAAAGCTTTACAAT+TGG - chr7_4:34551563-34551582 Msa1150750:CDS 25.0%
!! AATCCTTATTTCAGAGAAAA+TGG - chr7_4:34551871-34551890 Msa1150750:five_prime_UTR 25.0%
! TGTATATAAAAGCAAATCCT+AGG - chr7_4:34550349-34550368 Msa1150750:three_prime_UTR 25.0%
!!! TGTAATCAAACAACTGATTT+TGG + chr7_4:34550388-34550407 None:intergenic 25.0%
! ATACAAATATGAGCAAGAAA+AGG - chr7_4:34550522-34550541 Msa1150750:three_prime_UTR 25.0%
! CAATATATTCAAGAATCACA+AGG + chr7_4:34550639-34550658 None:intergenic 25.0%
! TTGAATATATTGATGAGACT+TGG - chr7_4:34550647-34550666 Msa1150750:CDS 25.0%
! ACATCGATAAAAATAGAAGA+GGG + chr7_4:34550761-34550780 None:intergenic 25.0%
! TACATCGATAAAAATAGAAG+AGG + chr7_4:34550762-34550781 None:intergenic 25.0%
! TAAAGTTGGATATTTGAACT+TGG + chr7_4:34550793-34550812 None:intergenic 25.0%
! TATTTAGTGCTAACTAAAGT+TGG + chr7_4:34550840-34550859 None:intergenic 25.0%
!! CTAAGTAAATTTGAGATCTT+AGG - chr7_4:34550865-34550884 Msa1150750:CDS 25.0%
!!! CTTTTTTTTTGTTGACAACA+TGG + chr7_4:34550904-34550923 None:intergenic 25.0%
!! ATGGTACTTTATTTACCTTT+CGG + chr7_4:34551012-34551031 None:intergenic 25.0%
! AAAAAAAAACAATTGGACTC+GGG + chr7_4:34551114-34551133 None:intergenic 25.0%
!!! TGAGAAAGTATCTAACTTAA+AGG - chr7_4:34551207-34551226 Msa1150750:intron 25.0%
!! TTTAGGTTAAATATCACATG+TGG + chr7_4:34551234-34551253 None:intergenic 25.0%
! AATTTCCAAAGCTTTACAAT+TGG - chr7_4:34551563-34551582 Msa1150750:CDS 25.0%
!! AATCCTTATTTCAGAGAAAA+TGG - chr7_4:34551871-34551890 Msa1150750:five_prime_UTR 25.0%
!! TTGCTTTTATATACAGAGCA+AGG + chr7_4:34550344-34550363 None:intergenic 30.0%
AAATATGAGCAAGAAAAGGT+TGG - chr7_4:34550526-34550545 Msa1150750:three_prime_UTR 30.0%
AATATGAGCAAGAAAAGGTT+GGG - chr7_4:34550527-34550546 Msa1150750:three_prime_UTR 30.0%
! GCTCTTTTATAAGGATCATT+AGG + chr7_4:34550691-34550710 None:intergenic 30.0%
TACCTTGTCATCTATGAAAT+TGG + chr7_4:34550731-34550750 None:intergenic 30.0%
TGTTAACCATTCGATTATCA+AGG - chr7_4:34550957-34550976 Msa1150750:intron 30.0%
GTTAACCATTCGATTATCAA+GGG - chr7_4:34550958-34550977 Msa1150750:intron 30.0%
! TTTATCCCTTGATAATCGAA+TGG + chr7_4:34550966-34550985 None:intergenic 30.0%
AGAATCTGAATTCGATTTCT+GGG + chr7_4:34551054-34551073 None:intergenic 30.0%
AAGAATCTGAATTCGATTTC+TGG + chr7_4:34551055-34551074 None:intergenic 30.0%
!! CTAAACAATTCGCCATTTTA+TGG - chr7_4:34551075-34551094 Msa1150750:intron 30.0%
GAGTAATGAGTTCCATAAAA+TGG + chr7_4:34551090-34551109 None:intergenic 30.0%
GAACCAAAAAGCTATGATTA+CGG + chr7_4:34551497-34551516 None:intergenic 30.0%
TTGGATGATTGTTGAATTCT+TGG + chr7_4:34551591-34551610 None:intergenic 30.0%
CAACAATCATCCAATTGTTA+AGG - chr7_4:34551597-34551616 Msa1150750:CDS 30.0%
! GGCAATTTTTCCTTAACAAT+TGG + chr7_4:34551610-34551629 None:intergenic 30.0%
ATCCTAGAATTTCTTAACCT+AGG + chr7_4:34551818-34551837 None:intergenic 30.0%
!!! ATGCCATTTTCTCTGAAATA+AGG + chr7_4:34551877-34551896 None:intergenic 30.0%
!! TTGCTTTTATATACAGAGCA+AGG + chr7_4:34550344-34550363 None:intergenic 30.0%
AAATATGAGCAAGAAAAGGT+TGG - chr7_4:34550526-34550545 Msa1150750:three_prime_UTR 30.0%
AATATGAGCAAGAAAAGGTT+GGG - chr7_4:34550527-34550546 Msa1150750:three_prime_UTR 30.0%
! GCTCTTTTATAAGGATCATT+AGG + chr7_4:34550691-34550710 None:intergenic 30.0%
TACCTTGTCATCTATGAAAT+TGG + chr7_4:34550731-34550750 None:intergenic 30.0%
TGTTAACCATTCGATTATCA+AGG - chr7_4:34550957-34550976 Msa1150750:intron 30.0%
GTTAACCATTCGATTATCAA+GGG - chr7_4:34550958-34550977 Msa1150750:intron 30.0%
! TTTATCCCTTGATAATCGAA+TGG + chr7_4:34550966-34550985 None:intergenic 30.0%
AGAATCTGAATTCGATTTCT+GGG + chr7_4:34551054-34551073 None:intergenic 30.0%
AAGAATCTGAATTCGATTTC+TGG + chr7_4:34551055-34551074 None:intergenic 30.0%
!! CTAAACAATTCGCCATTTTA+TGG - chr7_4:34551075-34551094 Msa1150750:intron 30.0%
GAGTAATGAGTTCCATAAAA+TGG + chr7_4:34551090-34551109 None:intergenic 30.0%
GAACCAAAAAGCTATGATTA+CGG + chr7_4:34551497-34551516 None:intergenic 30.0%
TTGGATGATTGTTGAATTCT+TGG + chr7_4:34551591-34551610 None:intergenic 30.0%
CAACAATCATCCAATTGTTA+AGG - chr7_4:34551597-34551616 Msa1150750:CDS 30.0%
! GGCAATTTTTCCTTAACAAT+TGG + chr7_4:34551610-34551629 None:intergenic 30.0%
ATCCTAGAATTTCTTAACCT+AGG + chr7_4:34551818-34551837 None:intergenic 30.0%
!!! ATGCCATTTTCTCTGAAATA+AGG + chr7_4:34551877-34551896 None:intergenic 30.0%
! TTGGTCATTGATTGATTCCT+AGG + chr7_4:34550369-34550388 None:intergenic 35.0%
TAATTGATCAAGCTCTACGA+TGG - chr7_4:34550408-34550427 Msa1150750:three_prime_UTR 35.0%
ATCAAATAAGGAAGAGGTGA+AGG - chr7_4:34550432-34550451 Msa1150750:three_prime_UTR 35.0%
TGGAAAGTCCATTTGTAACA+AGG - chr7_4:34550467-34550486 Msa1150750:three_prime_UTR 35.0%
GGAAAGTCCATTTGTAACAA+GGG - chr7_4:34550468-34550487 Msa1150750:three_prime_UTR 35.0%
!! GAGATTGCTCTAAAACTGAA+GGG - chr7_4:34550493-34550512 Msa1150750:three_prime_UTR 35.0%
CAGGAACTTTCTTGTAAACA+GGG + chr7_4:34550582-34550601 None:intergenic 35.0%
ACAGGAACTTTCTTGTAAAC+AGG + chr7_4:34550583-34550602 None:intergenic 35.0%
AAGGATCATTAGGCAAGATA+GGG + chr7_4:34550681-34550700 None:intergenic 35.0%
TAAGGATCATTAGGCAAGAT+AGG + chr7_4:34550682-34550701 None:intergenic 35.0%
TGATCCTTATAAAAGAGCCT+TGG - chr7_4:34550693-34550712 Msa1150750:CDS 35.0%
GTCCAATTTCATAGATGACA+AGG - chr7_4:34550726-34550745 Msa1150750:CDS 35.0%
!! GAGTATTGAGGAAACAAAAG+AGG - chr7_4:34551396-34551415 Msa1150750:intron 35.0%
ATTTCTTGAGAATGAGCTCA+AGG - chr7_4:34551426-34551445 Msa1150750:intron 35.0%
TCAAGGACAAATTCTTTGGT+GGG - chr7_4:34551443-34551462 Msa1150750:intron 35.0%
CAAATGCTTCTTGTATAGGT+GGG + chr7_4:34551519-34551538 None:intergenic 35.0%
AGTCCAAATGCTTCTTGTAT+AGG + chr7_4:34551523-34551542 None:intergenic 35.0%
ACTGAAATTGTTCACTAGTG+AGG - chr7_4:34551540-34551559 Msa1150750:CDS 35.0%
! AGCTTTGTAGAATGCCAAAA+GGG + chr7_4:34551644-34551663 None:intergenic 35.0%
ACTAGATATATGCAACACCT+TGG - chr7_4:34551786-34551805 Msa1150750:CDS 35.0%
CTCCTAGGTTAAGAAATTCT+AGG - chr7_4:34551813-34551832 Msa1150750:exon 35.0%
! TTGGTCATTGATTGATTCCT+AGG + chr7_4:34550369-34550388 None:intergenic 35.0%
TAATTGATCAAGCTCTACGA+TGG - chr7_4:34550408-34550427 Msa1150750:three_prime_UTR 35.0%
ATCAAATAAGGAAGAGGTGA+AGG - chr7_4:34550432-34550451 Msa1150750:three_prime_UTR 35.0%
TGGAAAGTCCATTTGTAACA+AGG - chr7_4:34550467-34550486 Msa1150750:three_prime_UTR 35.0%
GGAAAGTCCATTTGTAACAA+GGG - chr7_4:34550468-34550487 Msa1150750:three_prime_UTR 35.0%
!! GAGATTGCTCTAAAACTGAA+GGG - chr7_4:34550493-34550512 Msa1150750:three_prime_UTR 35.0%
CAGGAACTTTCTTGTAAACA+GGG + chr7_4:34550582-34550601 None:intergenic 35.0%
ACAGGAACTTTCTTGTAAAC+AGG + chr7_4:34550583-34550602 None:intergenic 35.0%
AAGGATCATTAGGCAAGATA+GGG + chr7_4:34550681-34550700 None:intergenic 35.0%
TAAGGATCATTAGGCAAGAT+AGG + chr7_4:34550682-34550701 None:intergenic 35.0%
TGATCCTTATAAAAGAGCCT+TGG - chr7_4:34550693-34550712 Msa1150750:CDS 35.0%
GTCCAATTTCATAGATGACA+AGG - chr7_4:34550726-34550745 Msa1150750:CDS 35.0%
!! GAGTATTGAGGAAACAAAAG+AGG - chr7_4:34551396-34551415 Msa1150750:intron 35.0%
ATTTCTTGAGAATGAGCTCA+AGG - chr7_4:34551426-34551445 Msa1150750:intron 35.0%
TCAAGGACAAATTCTTTGGT+GGG - chr7_4:34551443-34551462 Msa1150750:intron 35.0%
CAAATGCTTCTTGTATAGGT+GGG + chr7_4:34551519-34551538 None:intergenic 35.0%
AGTCCAAATGCTTCTTGTAT+AGG + chr7_4:34551523-34551542 None:intergenic 35.0%
ACTGAAATTGTTCACTAGTG+AGG - chr7_4:34551540-34551559 Msa1150750:CDS 35.0%
! AGCTTTGTAGAATGCCAAAA+GGG + chr7_4:34551644-34551663 None:intergenic 35.0%
ACTAGATATATGCAACACCT+TGG - chr7_4:34551786-34551805 Msa1150750:CDS 35.0%
CTCCTAGGTTAAGAAATTCT+AGG - chr7_4:34551813-34551832 Msa1150750:exon 35.0%
CTCTACGATGGCATCAAATA+AGG - chr7_4:34550420-34550439 Msa1150750:three_prime_UTR 40.0%
GATGGCATCAAATAAGGAAG+AGG - chr7_4:34550426-34550445 Msa1150750:three_prime_UTR 40.0%
! AAGGAAGAGGTGAAGGTTTT+TGG - chr7_4:34550439-34550458 Msa1150750:three_prime_UTR 40.0%
!! AGAGGTGAAGGTTTTTGGAT+TGG - chr7_4:34550444-34550463 Msa1150750:three_prime_UTR 40.0%
AAGTCCATTTGTAACAAGGG+TGG - chr7_4:34550471-34550490 Msa1150750:three_prime_UTR 40.0%
ATCTCCACCCTTGTTACAAA+TGG + chr7_4:34550478-34550497 None:intergenic 40.0%
!! GGAGATTGCTCTAAAACTGA+AGG - chr7_4:34550492-34550511 Msa1150750:three_prime_UTR 40.0%
ATCACAAGGGACTCTGATAT+GGG + chr7_4:34550625-34550644 None:intergenic 40.0%
AATCACAAGGGACTCTGATA+TGG + chr7_4:34550626-34550645 None:intergenic 40.0%
TTGTTGACAACATGGGTCTA+AGG + chr7_4:34550896-34550915 None:intergenic 40.0%
TAATTCGAACTTCAGCCGAA+AGG - chr7_4:34550994-34551013 Msa1150750:intron 40.0%
!! AGCACTGGTCTCACAAATTA+AGG + chr7_4:34551324-34551343 None:intergenic 40.0%
!! AGAACGTGAGAAGAGTATTG+AGG - chr7_4:34551384-34551403 Msa1150750:intron 40.0%
GAGCTCAAGGACAAATTCTT+TGG - chr7_4:34551439-34551458 Msa1150750:intron 40.0%
CTCAAGGACAAATTCTTTGG+TGG - chr7_4:34551442-34551461 Msa1150750:intron 40.0%
CAAGGACAAATTCTTTGGTG+GGG - chr7_4:34551444-34551463 Msa1150750:intron 40.0%
! CTGCCGTAATCATAGCTTTT+TGG - chr7_4:34551491-34551510 Msa1150750:intron 40.0%
CCAAATGCTTCTTGTATAGG+TGG + chr7_4:34551520-34551539 None:intergenic 40.0%
!! CCACCTATACAAGAAGCATT+TGG - chr7_4:34551517-34551536 Msa1150750:CDS 40.0%
TGGCTCCAATTGTAAAGCTT+TGG + chr7_4:34551571-34551590 None:intergenic 40.0%
! GAGCTTTGTAGAATGCCAAA+AGG + chr7_4:34551645-34551664 None:intergenic 40.0%
CTTAACCTAGGAGAAATCCA+AGG + chr7_4:34551806-34551825 None:intergenic 40.0%
CTCTACGATGGCATCAAATA+AGG - chr7_4:34550420-34550439 Msa1150750:three_prime_UTR 40.0%
GATGGCATCAAATAAGGAAG+AGG - chr7_4:34550426-34550445 Msa1150750:three_prime_UTR 40.0%
! AAGGAAGAGGTGAAGGTTTT+TGG - chr7_4:34550439-34550458 Msa1150750:three_prime_UTR 40.0%
!! AGAGGTGAAGGTTTTTGGAT+TGG - chr7_4:34550444-34550463 Msa1150750:three_prime_UTR 40.0%
AAGTCCATTTGTAACAAGGG+TGG - chr7_4:34550471-34550490 Msa1150750:three_prime_UTR 40.0%
ATCTCCACCCTTGTTACAAA+TGG + chr7_4:34550478-34550497 None:intergenic 40.0%
!! GGAGATTGCTCTAAAACTGA+AGG - chr7_4:34550492-34550511 Msa1150750:three_prime_UTR 40.0%
ATCACAAGGGACTCTGATAT+GGG + chr7_4:34550625-34550644 None:intergenic 40.0%
AATCACAAGGGACTCTGATA+TGG + chr7_4:34550626-34550645 None:intergenic 40.0%
TTGTTGACAACATGGGTCTA+AGG + chr7_4:34550896-34550915 None:intergenic 40.0%
TAATTCGAACTTCAGCCGAA+AGG - chr7_4:34550994-34551013 Msa1150750:intron 40.0%
!! AGCACTGGTCTCACAAATTA+AGG + chr7_4:34551324-34551343 None:intergenic 40.0%
!! AGAACGTGAGAAGAGTATTG+AGG - chr7_4:34551384-34551403 Msa1150750:intron 40.0%
GAGCTCAAGGACAAATTCTT+TGG - chr7_4:34551439-34551458 Msa1150750:intron 40.0%
CTCAAGGACAAATTCTTTGG+TGG - chr7_4:34551442-34551461 Msa1150750:intron 40.0%
CAAGGACAAATTCTTTGGTG+GGG - chr7_4:34551444-34551463 Msa1150750:intron 40.0%
! CTGCCGTAATCATAGCTTTT+TGG - chr7_4:34551491-34551510 Msa1150750:intron 40.0%
CCAAATGCTTCTTGTATAGG+TGG + chr7_4:34551520-34551539 None:intergenic 40.0%
!! CCACCTATACAAGAAGCATT+TGG - chr7_4:34551517-34551536 Msa1150750:CDS 40.0%
TGGCTCCAATTGTAAAGCTT+TGG + chr7_4:34551571-34551590 None:intergenic 40.0%
! GAGCTTTGTAGAATGCCAAA+AGG + chr7_4:34551645-34551664 None:intergenic 40.0%
CTTAACCTAGGAGAAATCCA+AGG + chr7_4:34551806-34551825 None:intergenic 40.0%
!! GGTGAAGGTTTTTGGATTGG+TGG - chr7_4:34550447-34550466 Msa1150750:three_prime_UTR 45.0%
! CGTGCCAAGGCTCTTTTATA+AGG + chr7_4:34550700-34550719 None:intergenic 45.0%
ACAAGCTTTCCGAACACCAT+TGG + chr7_4:34551347-34551366 None:intergenic 45.0%
TTCTTTGGTGGGGAGGATAT+TGG - chr7_4:34551454-34551473 Msa1150750:intron 45.0%
AATGCCAAAAGGGTCTCTCT+AGG + chr7_4:34551634-34551653 None:intergenic 45.0%
CAACACCTTGGATTTCTCCT+AGG - chr7_4:34551798-34551817 Msa1150750:CDS 45.0%
!! GGTGAAGGTTTTTGGATTGG+TGG - chr7_4:34550447-34550466 Msa1150750:three_prime_UTR 45.0%
! CGTGCCAAGGCTCTTTTATA+AGG + chr7_4:34550700-34550719 None:intergenic 45.0%
ACAAGCTTTCCGAACACCAT+TGG + chr7_4:34551347-34551366 None:intergenic 45.0%
TTCTTTGGTGGGGAGGATAT+TGG - chr7_4:34551454-34551473 Msa1150750:intron 45.0%
AATGCCAAAAGGGTCTCTCT+AGG + chr7_4:34551634-34551653 None:intergenic 45.0%
CAACACCTTGGATTTCTCCT+AGG - chr7_4:34551798-34551817 Msa1150750:CDS 45.0%
!! AAAAAAATAAATAATAAAGT+TGG + chr7_4:34550807-34550826 None:intergenic 5.0%
!!! ATAAACAAAATAATTTTTTT+GGG - chr7_4:34550934-34550953 Msa1150750:intron 5.0%
!! AAAAAAATAAATAATAAAGT+TGG + chr7_4:34550807-34550826 None:intergenic 5.0%
!!! ATAAACAAAATAATTTTTTT+GGG - chr7_4:34550934-34550953 Msa1150750:intron 5.0%
AAAGAGCCTTGGCACGTTTC+TGG - chr7_4:34550704-34550723 Msa1150750:CDS 50.0%
ATTGGACCAGAAACGTGCCA+AGG + chr7_4:34550713-34550732 None:intergenic 50.0%
TTGTGAGACCAGTGCTCCAA+TGG - chr7_4:34551328-34551347 Msa1150750:intron 50.0%
ACCAGTGCTCCAATGGTGTT+CGG - chr7_4:34551335-34551354 Msa1150750:intron 50.0%
GGACAAATTCTTTGGTGGGG+AGG - chr7_4:34551447-34551466 Msa1150750:intron 50.0%
AAAGAGCCTTGGCACGTTTC+TGG - chr7_4:34550704-34550723 Msa1150750:CDS 50.0%
ATTGGACCAGAAACGTGCCA+AGG + chr7_4:34550713-34550732 None:intergenic 50.0%
TTGTGAGACCAGTGCTCCAA+TGG - chr7_4:34551328-34551347 Msa1150750:intron 50.0%
ACCAGTGCTCCAATGGTGTT+CGG - chr7_4:34551335-34551354 Msa1150750:intron 50.0%
GGACAAATTCTTTGGTGGGG+AGG - chr7_4:34551447-34551466 Msa1150750:intron 50.0%
TCCGAACACCATTGGAGCAC+TGG + chr7_4:34551339-34551358 None:intergenic 55.0%
! GCCTCCTAGAGAGACCCTTT+TGG - chr7_4:34551627-34551646 Msa1150750:CDS 55.0%
GCCAAAAGGGTCTCTCTAGG+AGG + chr7_4:34551631-34551650 None:intergenic 55.0%
TCCGAACACCATTGGAGCAC+TGG + chr7_4:34551339-34551358 None:intergenic 55.0%
! GCCTCCTAGAGAGACCCTTT+TGG - chr7_4:34551627-34551646 Msa1150750:CDS 55.0%
GCCAAAAGGGTCTCTCTAGG+AGG + chr7_4:34551631-34551650 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 34550269 34551983 34550269 ID=Msa1150750;Name=Msa1150750
chr7_4 mRNA 34550269 34551983 34550269 ID=Msa1150750-mRNA-1;Parent=Msa1150750;Name=Msa1150750-mRNA-1;_AED=0.05;_eAED=0.05;_QI=158|1|1|1|1|1|2|290|224
chr7_4 exon 34550269 34550912 34550269 ID=Msa1150750-mRNA-1:exon:8203;Parent=Msa1150750-mRNA-1
chr7_4 exon 34551505 34551983 34551505 ID=Msa1150750-mRNA-1:exon:8202;Parent=Msa1150750-mRNA-1
chr7_4 five_prime_UTR 34551826 34551983 34551826 ID=Msa1150750-mRNA-1:five_prime_utr;Parent=Msa1150750-mRNA-1
chr7_4 CDS 34551505 34551825 34551505 ID=Msa1150750-mRNA-1:cds;Parent=Msa1150750-mRNA-1
chr7_4 CDS 34550559 34550912 34550559 ID=Msa1150750-mRNA-1:cds;Parent=Msa1150750-mRNA-1
chr7_4 three_prime_UTR 34550269 34550558 34550269 ID=Msa1150750-mRNA-1:three_prime_utr;Parent=Msa1150750-mRNA-1
Gene Sequence

>Msa1150750

ATGGCATCAAATAAGGAAGAGGTGAAGGTTTTTGGATTGGTGGAAAGTCCATTTGTAACAAGGGTGGAGATTGCTCTAAAACTGAAGGGAGTTGAATACAAATATGAGCAAGAAAAGGTTGGGAACTTGAGTGATACACTCAAAAAATACAACCCTGTTTACAAGAAAGTTCCTGTATTTGTTCATAATGATAAGCCCATATCAGAGTCCCTTGTGATTCTTGAATATATTGATGAGACTTGGAAACAAAACCCTATCTTGCCTAATGATCCTTATAAAAGAGCCTTGGCACGTTTCTGGTCCAATTTCATAGATGACAAGTGCTCCAATGGTGTTCGGAAAGCTTGTTTCACTCTTGATGAGAAAGAACGTGAGAAGAGTATTGAGGAAACAAAAGAGGCACTTCAATTTCTTGAGAATGAGCTCAAGGACAAATTCTTTGGTGGGGAGGATATTGGCTTTGTTGACATTGCTGCCGTAATCATAGCTTTTTGGTTCCCACCTATACAAGAAGCATTTGGACTGAAATTGTTCACTAGTGAGGAATTTCCAAAGCTTTACAATTGGAGCCAAGAATTCAACAATCATCCAATTGTTAAGGAAAAATTGCCTCCTAGAGAGACCCTTTTGGCATTCTACAAAGCTCGTTATGAAAGTCTTGTTGCTTCAAAATAG

Protein sequence

>Msa1150750

MASNKEEVKVFGLVESPFVTRVEIALKLKGVEYKYEQEKVGNLSDTLKKYNPVYKKVPVFVHNDKPISESLVILEYIDETWKQNPILPNDPYKRALARFWSNFIDDKCSNGVRKACFTLDEKEREKSIEETKEALQFLENELKDKFFGGEDIGFVDIAAVIIAFWFPPIQEAFGLKLFTSEEFPKLYNWSQEFNNHPIVKEKLPPRETLLAFYKARYESLVASK*