Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1414810 | A0A072VJN9 | 97.500 | 280 | 7 | 0 | 1 | 280 | 1 | 280 | 0.0 | 553 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1375420 | Msa1414810 | 0.822719 | 2.037836e-53 | -8.615850e-47 |
| Msa1414810 | Msa1432830 | 0.821589 | 3.725294e-53 | -8.615850e-47 |
| Msa0652610 | Msa1414810 | 0.812582 | 3.942950e-51 | -8.615850e-47 |
| Msa0841030 | Msa1414810 | 0.804437 | 2.161602e-49 | -8.615850e-47 |
| Msa1306520 | Msa1414810 | 0.819053 | 1.420916e-52 | -8.615850e-47 |
| Msa1041250 | Msa1414810 | 0.804593 | 2.004775e-49 | -8.615850e-47 |
| Msa0246140 | Msa1414810 | 0.811537 | 6.661747e-51 | -8.615850e-47 |
| Msa0945320 | Msa1414810 | 0.806920 | 6.506511e-50 | -8.615850e-47 |
| Msa0947520 | Msa1414810 | 0.821632 | 3.642582e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1414810 | MtrunA17_Chr1g0178531 | 97.500 | 280 | 7 | 0 | 1 | 280 | 1 | 280 | 0.0 | 553 |
| Msa1414810 | MtrunA17_Chr7g0266411 | 42.258 | 310 | 124 | 12 | 3 | 280 | 1 | 287 | 1.96e-49 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1414810 | AT2G36220.1 | 35.836 | 293 | 137 | 11 | 1 | 274 | 1 | 261 | 4.37e-30 | 114 |
| Msa1414810 | AT3G52710.1 | 36.025 | 322 | 115 | 16 | 1 | 269 | 1 | 284 | 2.06e-29 | 113 |
Find 76 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGCGGAGTTAGGGTTTA+TGG | 0.148476 | tig0024143:+34817 | None:intergenic |
| TTGGTTCGCAAGCGACTTTC+CGG | 0.240044 | tig0024143:+34960 | None:intergenic |
| CACAGTGAACCGGCCGGTTT+GGG | 0.244338 | tig0024143:-34269 | Msa1414810:CDS |
| TTTGGATTTCTTCAAATTCT+TGG | 0.266541 | tig0024143:+34778 | None:intergenic |
| TGAGAGTTTGAAGCGGAGTT+AGG | 0.333425 | tig0024143:+34809 | None:intergenic |
| TCACAGTGAACCGGCCGGTT+TGG | 0.337046 | tig0024143:-34270 | Msa1414810:CDS |
| ACCGATGATTGTCGTAGCTT+TGG | 0.337880 | tig0024143:+34760 | None:intergenic |
| AACGTAGCTTTCTGTGATTT+CGG | 0.349811 | tig0024143:+34734 | None:intergenic |
| ACCGCCGCCCCGACGCGAAC+CGG | 0.362287 | tig0024143:+34237 | None:intergenic |
| ACTCACCACCGGAATCATTC+TGG | 0.363382 | tig0024143:-34922 | Msa1414810:CDS |
| GGAAACAACCTCGTGTTTCC+CGG | 0.372036 | tig0024143:+34674 | None:intergenic |
| CCGGTTTGGGTTCGATGAAC+CGG | 0.389307 | tig0024143:-34256 | Msa1414810:CDS |
| CTACGATATTATGCCACAAC+TGG | 0.399202 | tig0024143:-35026 | None:intergenic |
| GTCGGCGGCGACGCCGGATA+AGG | 0.399937 | tig0024143:+34982 | None:intergenic |
| ACTCAAAGAAAGAAGAAAAC+TGG | 0.400989 | tig0024143:-34455 | Msa1414810:CDS |
| CGCCGGATAAGGCGGAAACT+AGG | 0.401389 | tig0024143:+34993 | None:intergenic |
| TCGCCGAAGGTTTCTTGTAT+AGG | 0.403972 | tig0024143:-34596 | Msa1414810:CDS |
| CCAATCGACGCGCTTCGTTT+CGG | 0.408547 | tig0024143:+34653 | None:intergenic |
| ACCCTAGTTTCCGCCTTATC+CGG | 0.413514 | tig0024143:-34995 | Msa1414810:CDS |
| TTGGAGAGCCAGAATGATTC+CGG | 0.424913 | tig0024143:+34914 | None:intergenic |
| GGCGGCGGAGACGCCGGTAG+CGG | 0.439042 | tig0024143:+34508 | None:intergenic |
| GCTACCGGCGTCTCCGCCGC+CGG | 0.449752 | tig0024143:-34506 | Msa1414810:CDS |
| CAAGAAACCTTCGGCGAAGA+AGG | 0.455115 | tig0024143:+34602 | None:intergenic |
| TGTTCAGAAATCGAATCTTC+CGG | 0.470538 | tig0024143:-34381 | Msa1414810:CDS |
| GAGAGTTTGAAGCGGAGTTA+GGG | 0.479960 | tig0024143:+34810 | None:intergenic |
| CCGGTTCATCGAACCCAAAC+CGG | 0.482419 | tig0024143:+34256 | None:intergenic |
| TATCCGGCGTCGCCGCCGAC+CGG | 0.484565 | tig0024143:-34979 | Msa1414810:CDS |
| TTTCCGGTCGGCGGCGACGC+CGG | 0.485968 | tig0024143:+34976 | None:intergenic |
| TTCGATGAACCGGTTCGCGT+CGG | 0.487488 | tig0024143:-34246 | Msa1414810:CDS |
| CTGTCTTACAACGCCGGCGG+CGG | 0.498230 | tig0024143:+34493 | None:intergenic |
| GAGTCTTCCGCTTCATCCGT+TGG | 0.498389 | tig0024143:+34941 | None:intergenic |
| TCGATTTCTTCCACCGCTAC+CGG | 0.504664 | tig0024143:-34521 | Msa1414810:CDS |
| CGGTCTGAGTCATGGGGAGT+AGG | 0.511799 | tig0024143:-34218 | Msa1414810:CDS |
| GCCGGATAAGGCGGAAACTA+GGG | 0.517835 | tig0024143:+34994 | None:intergenic |
| CCGAAACGAAGCGCGTCGAT+TGG | 0.519236 | tig0024143:-34653 | Msa1414810:CDS |
| AAACGAAGCGCGTCGATTGG+AGG | 0.522513 | tig0024143:-34650 | Msa1414810:CDS |
| AACGCCGGCGGCGGAGACGC+CGG | 0.529036 | tig0024143:+34502 | None:intergenic |
| TCCAAAGCTACGACAATCAT+CGG | 0.538829 | tig0024143:-34761 | Msa1414810:CDS |
| TGATTCGTTTCTTTCGTAGA+CGG | 0.541509 | tig0024143:+34859 | None:intergenic |
| GAGTAGAACGGTTGAAGAGA+CGG | 0.543360 | tig0024143:-34294 | Msa1414810:CDS |
| TTCGTTGAAGAATCTTCCAC+CGG | 0.553166 | tig0024143:+34362 | None:intergenic |
| GGCGGAGACGCCGGTAGCGG+TGG | 0.555160 | tig0024143:+34511 | None:intergenic |
| CGTCGGAATCATCACAAGCC+GGG | 0.559044 | tig0024143:-34692 | Msa1414810:CDS |
| CTACCTATACAAGAAACCTT+CGG | 0.563783 | tig0024143:+34593 | None:intergenic |
| AGAGACGGTTCACAGTGAAC+CGG | 0.571066 | tig0024143:-34279 | Msa1414810:CDS |
| TTCGCAAGCGACTTTCCGGT+CGG | 0.571303 | tig0024143:+34964 | None:intergenic |
| ACGAATAAGAAGAGAAACAA+TGG | 0.573131 | tig0024143:-34344 | Msa1414810:CDS |
| CCAGTCGTATTCAGCATCGT+TGG | 0.573706 | tig0024143:+34895 | None:intergenic |
| CCGTCGGAATCATCACAAGC+CGG | 0.577564 | tig0024143:-34693 | Msa1414810:CDS |
| ACGATGCTGAATACGACTGG+TGG | 0.582801 | tig0024143:-34892 | Msa1414810:CDS |
| CGATGAACCGGTTCGCGTCG+GGG | 0.591259 | tig0024143:-34244 | Msa1414810:CDS |
| GGCGGCGACGCCGGATAAGG+CGG | 0.594812 | tig0024143:+34985 | None:intergenic |
| TTCATCGAACCCAAACCGGC+CGG | 0.598342 | tig0024143:+34260 | None:intergenic |
| CCAACGATGCTGAATACGAC+TGG | 0.601276 | tig0024143:-34895 | Msa1414810:CDS |
| GCAAGCGACTTTCCGGTCGG+CGG | 0.604992 | tig0024143:+34967 | None:intergenic |
| TTGCGAACCAACGGATGAAG+CGG | 0.617781 | tig0024143:-34948 | Msa1414810:CDS |
| GCTACGTTAGCAGAAGCTAG+AGG | 0.623845 | tig0024143:-34719 | Msa1414810:CDS |
| GGGCGGCGGTCTGAGTCATG+GGG | 0.625378 | tig0024143:-34224 | Msa1414810:CDS |
| CCGGCTTGTGATGATTCCGA+CGG | 0.625963 | tig0024143:+34693 | None:intergenic |
| GAAAGTCGCTTGCGAACCAA+CGG | 0.631019 | tig0024143:-34957 | Msa1414810:CDS |
| AGGAAGTACGGTGAGTAGAA+CGG | 0.631096 | tig0024143:-34306 | Msa1414810:CDS |
| CGATGCTGAATACGACTGGT+GGG | 0.634657 | tig0024143:-34891 | Msa1414810:CDS |
| GAATCGTTGAGAGTTTGAAG+CGG | 0.651586 | tig0024143:+34802 | None:intergenic |
| AGATTTCTGTCTTACAACGC+CGG | 0.652616 | tig0024143:+34487 | None:intergenic |
| TGAACCGGTTCGCGTCGGGG+CGG | 0.656897 | tig0024143:-34241 | Msa1414810:CDS |
| ACGGTTCACAGTGAACCGGC+CGG | 0.657233 | tig0024143:-34275 | Msa1414810:CDS |
| CGAAACGTGGACATAATCGA+AGG | 0.662504 | tig0024143:-34562 | Msa1414810:CDS |
| CAGAAGCTAGAGGCTGCCGT+CGG | 0.668462 | tig0024143:-34709 | Msa1414810:CDS |
| GCAGCCACCGAATTCACACA+TGG | 0.689032 | tig0024143:+34183 | None:intergenic |
| GAGAGCCAGAATGATTCCGG+TGG | 0.695626 | tig0024143:+34917 | None:intergenic |
| TGAAGCGGAAGACTCACCAC+CGG | 0.695803 | tig0024143:-34933 | Msa1414810:CDS |
| ATCACAAGCCGGGAAACACG+AGG | 0.698693 | tig0024143:-34682 | Msa1414810:CDS |
| AGGGTTTCGAAATCCAGTTG+TGG | 0.701704 | tig0024143:+35013 | None:intergenic |
| TCAGAAATCGAATCTTCCGG+TGG | 0.704776 | tig0024143:-34378 | Msa1414810:CDS |
| TTTCTGTCTTACAACGCCGG+CGG | 0.712194 | tig0024143:+34490 | None:intergenic |
| GGTAGAGTGAGATCGAAACG+TGG | 0.747418 | tig0024143:-34575 | Msa1414810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTTGGATTTCTTCAAATTCT+TGG | + | tig0024143:34437-34456 | None:intergenic | 25.0% |
| ! | TTTGGATTTCTTCAAATTCT+TGG | + | tig0024143:34437-34456 | None:intergenic | 25.0% |
| ACTCAAAGAAAGAAGAAAAC+TGG | - | tig0024143:34757-34776 | Msa1414810:CDS | 30.0% | |
| ACGAATAAGAAGAGAAACAA+TGG | - | tig0024143:34868-34887 | Msa1414810:CDS | 30.0% | |
| ACTCAAAGAAAGAAGAAAAC+TGG | - | tig0024143:34757-34776 | Msa1414810:CDS | 30.0% | |
| ACGAATAAGAAGAGAAACAA+TGG | - | tig0024143:34868-34887 | Msa1414810:CDS | 30.0% | |
| TGATTCGTTTCTTTCGTAGA+CGG | + | tig0024143:34356-34375 | None:intergenic | 35.0% | |
| AACGTAGCTTTCTGTGATTT+CGG | + | tig0024143:34481-34500 | None:intergenic | 35.0% | |
| CTACCTATACAAGAAACCTT+CGG | + | tig0024143:34622-34641 | None:intergenic | 35.0% | |
| !! | AAAGCGTTTGCTCTATTTTC+AGG | - | tig0024143:34788-34807 | Msa1414810:CDS | 35.0% |
| TGTTCAGAAATCGAATCTTC+CGG | - | tig0024143:34831-34850 | Msa1414810:CDS | 35.0% | |
| GAAACAATGGAAGAAAAACG+CGG | - | tig0024143:34881-34900 | Msa1414810:CDS | 35.0% | |
| AAACAATGGAAGAAAAACGC+GGG | - | tig0024143:34882-34901 | Msa1414810:CDS | 35.0% | |
| TGATTCGTTTCTTTCGTAGA+CGG | + | tig0024143:34356-34375 | None:intergenic | 35.0% | |
| AACGTAGCTTTCTGTGATTT+CGG | + | tig0024143:34481-34500 | None:intergenic | 35.0% | |
| CTACCTATACAAGAAACCTT+CGG | + | tig0024143:34622-34641 | None:intergenic | 35.0% | |
| !! | AAAGCGTTTGCTCTATTTTC+AGG | - | tig0024143:34788-34807 | Msa1414810:CDS | 35.0% |
| TGTTCAGAAATCGAATCTTC+CGG | - | tig0024143:34831-34850 | Msa1414810:CDS | 35.0% | |
| GAAACAATGGAAGAAAAACG+CGG | - | tig0024143:34881-34900 | Msa1414810:CDS | 35.0% | |
| AAACAATGGAAGAAAAACGC+GGG | - | tig0024143:34882-34901 | Msa1414810:CDS | 35.0% | |
| GAATCGTTGAGAGTTTGAAG+CGG | + | tig0024143:34413-34432 | None:intergenic | 40.0% | |
| TCCAAAGCTACGACAATCAT+CGG | - | tig0024143:34451-34470 | Msa1414810:CDS | 40.0% | |
| AGATTTCTGTCTTACAACGC+CGG | + | tig0024143:34728-34747 | None:intergenic | 40.0% | |
| ! | TCTGAACAGTTTTCTCTCTC+CGG | + | tig0024143:34819-34838 | None:intergenic | 40.0% |
| TTCGTTGAAGAATCTTCCAC+CGG | + | tig0024143:34853-34872 | None:intergenic | 40.0% | |
| GAATCGTTGAGAGTTTGAAG+CGG | + | tig0024143:34413-34432 | None:intergenic | 40.0% | |
| TCCAAAGCTACGACAATCAT+CGG | - | tig0024143:34451-34470 | Msa1414810:CDS | 40.0% | |
| AGATTTCTGTCTTACAACGC+CGG | + | tig0024143:34728-34747 | None:intergenic | 40.0% | |
| ! | TCTGAACAGTTTTCTCTCTC+CGG | + | tig0024143:34819-34838 | None:intergenic | 40.0% |
| TTCGTTGAAGAATCTTCCAC+CGG | + | tig0024143:34853-34872 | None:intergenic | 40.0% | |
| AGGGTTTCGAAATCCAGTTG+TGG | + | tig0024143:34202-34221 | None:intergenic | 45.0% | |
| TTGGAGAGCCAGAATGATTC+CGG | + | tig0024143:34301-34320 | None:intergenic | 45.0% | |
| TGAAGCGGAGTTAGGGTTTA+TGG | + | tig0024143:34398-34417 | None:intergenic | 45.0% | |
| ! | GAGAGTTTGAAGCGGAGTTA+GGG | + | tig0024143:34405-34424 | None:intergenic | 45.0% |
| ! | TGAGAGTTTGAAGCGGAGTT+AGG | + | tig0024143:34406-34425 | None:intergenic | 45.0% |
| ACCGATGATTGTCGTAGCTT+TGG | + | tig0024143:34455-34474 | None:intergenic | 45.0% | |
| ! | TTTTGAACCTTCTTCGCCGA+AGG | - | tig0024143:34603-34622 | Msa1414810:CDS | 45.0% |
| TCGCCGAAGGTTTCTTGTAT+AGG | - | tig0024143:34616-34635 | Msa1414810:CDS | 45.0% | |
| CGAAACGTGGACATAATCGA+AGG | - | tig0024143:34650-34669 | Msa1414810:CDS | 45.0% | |
| !! | GCTCTATTTTCAGGAGTCAC+CGG | - | tig0024143:34797-34816 | Msa1414810:CDS | 45.0% |
| TCAGAAATCGAATCTTCCGG+TGG | - | tig0024143:34834-34853 | Msa1414810:CDS | 45.0% | |
| AATGGAAGAAAAACGCGGGA+AGG | - | tig0024143:34886-34905 | Msa1414810:CDS | 45.0% | |
| AAAAACGCGGGAAGGAAGTA+CGG | - | tig0024143:34894-34913 | Msa1414810:CDS | 45.0% | |
| ! | AGGAAGTACGGTGAGTAGAA+CGG | - | tig0024143:34906-34925 | Msa1414810:CDS | 45.0% |
| GAGTAGAACGGTTGAAGAGA+CGG | - | tig0024143:34918-34937 | Msa1414810:CDS | 45.0% | |
| AGGGTTTCGAAATCCAGTTG+TGG | + | tig0024143:34202-34221 | None:intergenic | 45.0% | |
| TTGGAGAGCCAGAATGATTC+CGG | + | tig0024143:34301-34320 | None:intergenic | 45.0% | |
| TGAAGCGGAGTTAGGGTTTA+TGG | + | tig0024143:34398-34417 | None:intergenic | 45.0% | |
| ! | GAGAGTTTGAAGCGGAGTTA+GGG | + | tig0024143:34405-34424 | None:intergenic | 45.0% |
| ! | TGAGAGTTTGAAGCGGAGTT+AGG | + | tig0024143:34406-34425 | None:intergenic | 45.0% |
| ACCGATGATTGTCGTAGCTT+TGG | + | tig0024143:34455-34474 | None:intergenic | 45.0% | |
| ! | TTTTGAACCTTCTTCGCCGA+AGG | - | tig0024143:34603-34622 | Msa1414810:CDS | 45.0% |
| TCGCCGAAGGTTTCTTGTAT+AGG | - | tig0024143:34616-34635 | Msa1414810:CDS | 45.0% | |
| CGAAACGTGGACATAATCGA+AGG | - | tig0024143:34650-34669 | Msa1414810:CDS | 45.0% | |
| !! | GCTCTATTTTCAGGAGTCAC+CGG | - | tig0024143:34797-34816 | Msa1414810:CDS | 45.0% |
| TCAGAAATCGAATCTTCCGG+TGG | - | tig0024143:34834-34853 | Msa1414810:CDS | 45.0% | |
| AATGGAAGAAAAACGCGGGA+AGG | - | tig0024143:34886-34905 | Msa1414810:CDS | 45.0% | |
| AAAAACGCGGGAAGGAAGTA+CGG | - | tig0024143:34894-34913 | Msa1414810:CDS | 45.0% | |
| ! | AGGAAGTACGGTGAGTAGAA+CGG | - | tig0024143:34906-34925 | Msa1414810:CDS | 45.0% |
| GAGTAGAACGGTTGAAGAGA+CGG | - | tig0024143:34918-34937 | Msa1414810:CDS | 45.0% | |
| ACCCTAGTTTCCGCCTTATC+CGG | - | tig0024143:34217-34236 | Msa1414810:CDS | 50.0% | |
| ! | TTGGTTCGCAAGCGACTTTC+CGG | + | tig0024143:34255-34274 | None:intergenic | 50.0% |
| GAAAGTCGCTTGCGAACCAA+CGG | - | tig0024143:34255-34274 | Msa1414810:CDS | 50.0% | |
| TTGCGAACCAACGGATGAAG+CGG | - | tig0024143:34264-34283 | Msa1414810:CDS | 50.0% | |
| ACTCACCACCGGAATCATTC+TGG | - | tig0024143:34290-34309 | Msa1414810:CDS | 50.0% | |
| CCAGTCGTATTCAGCATCGT+TGG | + | tig0024143:34320-34339 | None:intergenic | 50.0% | |
| CCAACGATGCTGAATACGAC+TGG | - | tig0024143:34317-34336 | Msa1414810:CDS | 50.0% | |
| ACGATGCTGAATACGACTGG+TGG | - | tig0024143:34320-34339 | Msa1414810:CDS | 50.0% | |
| CGATGCTGAATACGACTGGT+GGG | - | tig0024143:34321-34340 | Msa1414810:CDS | 50.0% | |
| GCTACGTTAGCAGAAGCTAG+AGG | - | tig0024143:34493-34512 | Msa1414810:CDS | 50.0% | |
| GGAAACAACCTCGTGTTTCC+CGG | + | tig0024143:34541-34560 | None:intergenic | 50.0% | |
| CAAGAAACCTTCGGCGAAGA+AGG | + | tig0024143:34613-34632 | None:intergenic | 50.0% | |
| GGTAGAGTGAGATCGAAACG+TGG | - | tig0024143:34637-34656 | Msa1414810:CDS | 50.0% | |
| TCGATTTCTTCCACCGCTAC+CGG | - | tig0024143:34691-34710 | Msa1414810:CDS | 50.0% | |
| TTTCTGTCTTACAACGCCGG+CGG | + | tig0024143:34725-34744 | None:intergenic | 50.0% | |
| AGAGACGGTTCACAGTGAAC+CGG | - | tig0024143:34933-34952 | Msa1414810:CDS | 50.0% | |
| ACCCTAGTTTCCGCCTTATC+CGG | - | tig0024143:34217-34236 | Msa1414810:CDS | 50.0% | |
| ! | TTGGTTCGCAAGCGACTTTC+CGG | + | tig0024143:34255-34274 | None:intergenic | 50.0% |
| GAAAGTCGCTTGCGAACCAA+CGG | - | tig0024143:34255-34274 | Msa1414810:CDS | 50.0% | |
| TTGCGAACCAACGGATGAAG+CGG | - | tig0024143:34264-34283 | Msa1414810:CDS | 50.0% | |
| ACTCACCACCGGAATCATTC+TGG | - | tig0024143:34290-34309 | Msa1414810:CDS | 50.0% | |
| CCAGTCGTATTCAGCATCGT+TGG | + | tig0024143:34320-34339 | None:intergenic | 50.0% | |
| CCAACGATGCTGAATACGAC+TGG | - | tig0024143:34317-34336 | Msa1414810:CDS | 50.0% | |
| ACGATGCTGAATACGACTGG+TGG | - | tig0024143:34320-34339 | Msa1414810:CDS | 50.0% | |
| CGATGCTGAATACGACTGGT+GGG | - | tig0024143:34321-34340 | Msa1414810:CDS | 50.0% | |
| GCTACGTTAGCAGAAGCTAG+AGG | - | tig0024143:34493-34512 | Msa1414810:CDS | 50.0% | |
| GGAAACAACCTCGTGTTTCC+CGG | + | tig0024143:34541-34560 | None:intergenic | 50.0% | |
| CAAGAAACCTTCGGCGAAGA+AGG | + | tig0024143:34613-34632 | None:intergenic | 50.0% | |
| GGTAGAGTGAGATCGAAACG+TGG | - | tig0024143:34637-34656 | Msa1414810:CDS | 50.0% | |
| TCGATTTCTTCCACCGCTAC+CGG | - | tig0024143:34691-34710 | Msa1414810:CDS | 50.0% | |
| TTTCTGTCTTACAACGCCGG+CGG | + | tig0024143:34725-34744 | None:intergenic | 50.0% | |
| AGAGACGGTTCACAGTGAAC+CGG | - | tig0024143:34933-34952 | Msa1414810:CDS | 50.0% | |
| GCCGGATAAGGCGGAAACTA+GGG | + | tig0024143:34221-34240 | None:intergenic | 55.0% | |
| TTCGCAAGCGACTTTCCGGT+CGG | + | tig0024143:34251-34270 | None:intergenic | 55.0% | |
| GAGTCTTCCGCTTCATCCGT+TGG | + | tig0024143:34274-34293 | None:intergenic | 55.0% | |
| TGAAGCGGAAGACTCACCAC+CGG | - | tig0024143:34279-34298 | Msa1414810:CDS | 55.0% | |
| GAGAGCCAGAATGATTCCGG+TGG | + | tig0024143:34298-34317 | None:intergenic | 55.0% | |
| ! | CCGGCTTGTGATGATTCCGA+CGG | + | tig0024143:34522-34541 | None:intergenic | 55.0% |
| CCGTCGGAATCATCACAAGC+CGG | - | tig0024143:34519-34538 | Msa1414810:CDS | 55.0% | |
| CGTCGGAATCATCACAAGCC+GGG | - | tig0024143:34520-34539 | Msa1414810:CDS | 55.0% | |
| ATCACAAGCCGGGAAACACG+AGG | - | tig0024143:34530-34549 | Msa1414810:CDS | 55.0% | |
| CCAATCGACGCGCTTCGTTT+CGG | + | tig0024143:34562-34581 | None:intergenic | 55.0% | |
| !! | AAACGAAGCGCGTCGATTGG+AGG | - | tig0024143:34562-34581 | Msa1414810:CDS | 55.0% |
| TTCATCGAACCCAAACCGGC+CGG | + | tig0024143:34955-34974 | None:intergenic | 55.0% | |
| CCGGTTCATCGAACCCAAAC+CGG | + | tig0024143:34959-34978 | None:intergenic | 55.0% | |
| !! | CCGGTTTGGGTTCGATGAAC+CGG | - | tig0024143:34956-34975 | Msa1414810:CDS | 55.0% |
| !! | TTCGATGAACCGGTTCGCGT+CGG | - | tig0024143:34966-34985 | Msa1414810:CDS | 55.0% |
| GCCGGATAAGGCGGAAACTA+GGG | + | tig0024143:34221-34240 | None:intergenic | 55.0% | |
| TTCGCAAGCGACTTTCCGGT+CGG | + | tig0024143:34251-34270 | None:intergenic | 55.0% | |
| GAGTCTTCCGCTTCATCCGT+TGG | + | tig0024143:34274-34293 | None:intergenic | 55.0% | |
| TGAAGCGGAAGACTCACCAC+CGG | - | tig0024143:34279-34298 | Msa1414810:CDS | 55.0% | |
| GAGAGCCAGAATGATTCCGG+TGG | + | tig0024143:34298-34317 | None:intergenic | 55.0% | |
| ! | CCGGCTTGTGATGATTCCGA+CGG | + | tig0024143:34522-34541 | None:intergenic | 55.0% |
| CCGTCGGAATCATCACAAGC+CGG | - | tig0024143:34519-34538 | Msa1414810:CDS | 55.0% | |
| CGTCGGAATCATCACAAGCC+GGG | - | tig0024143:34520-34539 | Msa1414810:CDS | 55.0% | |
| ATCACAAGCCGGGAAACACG+AGG | - | tig0024143:34530-34549 | Msa1414810:CDS | 55.0% | |
| CCAATCGACGCGCTTCGTTT+CGG | + | tig0024143:34562-34581 | None:intergenic | 55.0% | |
| !! | AAACGAAGCGCGTCGATTGG+AGG | - | tig0024143:34562-34581 | Msa1414810:CDS | 55.0% |
| TTCATCGAACCCAAACCGGC+CGG | + | tig0024143:34955-34974 | None:intergenic | 55.0% | |
| CCGGTTCATCGAACCCAAAC+CGG | + | tig0024143:34959-34978 | None:intergenic | 55.0% | |
| !! | CCGGTTTGGGTTCGATGAAC+CGG | - | tig0024143:34956-34975 | Msa1414810:CDS | 55.0% |
| !! | TTCGATGAACCGGTTCGCGT+CGG | - | tig0024143:34966-34985 | Msa1414810:CDS | 55.0% |
| CGCCGGATAAGGCGGAAACT+AGG | + | tig0024143:34222-34241 | None:intergenic | 60.0% | |
| CAGAAGCTAGAGGCTGCCGT+CGG | - | tig0024143:34503-34522 | Msa1414810:CDS | 60.0% | |
| ! | CCGAAACGAAGCGCGTCGAT+TGG | - | tig0024143:34559-34578 | Msa1414810:CDS | 60.0% |
| ACGGTTCACAGTGAACCGGC+CGG | - | tig0024143:34937-34956 | Msa1414810:CDS | 60.0% | |
| TCACAGTGAACCGGCCGGTT+TGG | - | tig0024143:34942-34961 | Msa1414810:CDS | 60.0% | |
| ! | CACAGTGAACCGGCCGGTTT+GGG | - | tig0024143:34943-34962 | Msa1414810:CDS | 60.0% |
| !! | TCGATGAACCGGTTCGCGTC+GGG | - | tig0024143:34967-34986 | Msa1414810:CDS | 60.0% |
| CGGTCTGAGTCATGGGGAGT+AGG | - | tig0024143:34994-35013 | Msa1414810:CDS | 60.0% | |
| CGCCGGATAAGGCGGAAACT+AGG | + | tig0024143:34222-34241 | None:intergenic | 60.0% | |
| CAGAAGCTAGAGGCTGCCGT+CGG | - | tig0024143:34503-34522 | Msa1414810:CDS | 60.0% | |
| ! | CCGAAACGAAGCGCGTCGAT+TGG | - | tig0024143:34559-34578 | Msa1414810:CDS | 60.0% |
| ACGGTTCACAGTGAACCGGC+CGG | - | tig0024143:34937-34956 | Msa1414810:CDS | 60.0% | |
| TCACAGTGAACCGGCCGGTT+TGG | - | tig0024143:34942-34961 | Msa1414810:CDS | 60.0% | |
| ! | CACAGTGAACCGGCCGGTTT+GGG | - | tig0024143:34943-34962 | Msa1414810:CDS | 60.0% |
| !! | TCGATGAACCGGTTCGCGTC+GGG | - | tig0024143:34967-34986 | Msa1414810:CDS | 60.0% |
| CGGTCTGAGTCATGGGGAGT+AGG | - | tig0024143:34994-35013 | Msa1414810:CDS | 60.0% | |
| GCAAGCGACTTTCCGGTCGG+CGG | + | tig0024143:34248-34267 | None:intergenic | 65.0% | |
| CTGTCTTACAACGCCGGCGG+CGG | + | tig0024143:34722-34741 | None:intergenic | 65.0% | |
| !! | CGATGAACCGGTTCGCGTCG+GGG | - | tig0024143:34968-34987 | Msa1414810:CDS | 65.0% |
| GCAAGCGACTTTCCGGTCGG+CGG | + | tig0024143:34248-34267 | None:intergenic | 65.0% | |
| CTGTCTTACAACGCCGGCGG+CGG | + | tig0024143:34722-34741 | None:intergenic | 65.0% | |
| !! | CGATGAACCGGTTCGCGTCG+GGG | - | tig0024143:34968-34987 | Msa1414810:CDS | 65.0% |
| !! | TGAACCGGTTCGCGTCGGGG+CGG | - | tig0024143:34971-34990 | Msa1414810:CDS | 70.0% |
| GGGGCGGCGGTCTGAGTCAT+GGG | - | tig0024143:34987-35006 | Msa1414810:CDS | 70.0% | |
| GGGCGGCGGTCTGAGTCATG+GGG | - | tig0024143:34988-35007 | Msa1414810:CDS | 70.0% | |
| !! | TGAACCGGTTCGCGTCGGGG+CGG | - | tig0024143:34971-34990 | Msa1414810:CDS | 70.0% |
| GGGGCGGCGGTCTGAGTCAT+GGG | - | tig0024143:34987-35006 | Msa1414810:CDS | 70.0% | |
| GGGCGGCGGTCTGAGTCATG+GGG | - | tig0024143:34988-35007 | Msa1414810:CDS | 70.0% | |
| GGCGGCGACGCCGGATAAGG+CGG | + | tig0024143:34230-34249 | None:intergenic | 75.0% | |
| GTCGGCGGCGACGCCGGATA+AGG | + | tig0024143:34233-34252 | None:intergenic | 75.0% | |
| TATCCGGCGTCGCCGCCGAC+CGG | - | tig0024143:34233-34252 | Msa1414810:CDS | 75.0% | |
| TTTCCGGTCGGCGGCGACGC+CGG | + | tig0024143:34239-34258 | None:intergenic | 75.0% | |
| CGGGGCGGCGGTCTGAGTCA+TGG | - | tig0024143:34986-35005 | Msa1414810:CDS | 75.0% | |
| GGCGGCGACGCCGGATAAGG+CGG | + | tig0024143:34230-34249 | None:intergenic | 75.0% | |
| GTCGGCGGCGACGCCGGATA+AGG | + | tig0024143:34233-34252 | None:intergenic | 75.0% | |
| TATCCGGCGTCGCCGCCGAC+CGG | - | tig0024143:34233-34252 | Msa1414810:CDS | 75.0% | |
| TTTCCGGTCGGCGGCGACGC+CGG | + | tig0024143:34239-34258 | None:intergenic | 75.0% | |
| CGGGGCGGCGGTCTGAGTCA+TGG | - | tig0024143:34986-35005 | Msa1414810:CDS | 75.0% | |
| !! | GGCGGAGACGCCGGTAGCGG+TGG | + | tig0024143:34704-34723 | None:intergenic | 80.0% |
| ! | GGCGGCGGAGACGCCGGTAG+CGG | + | tig0024143:34707-34726 | None:intergenic | 80.0% |
| ! | GCTACCGGCGTCTCCGCCGC+CGG | - | tig0024143:34706-34725 | Msa1414810:CDS | 80.0% |
| ! | AACGCCGGCGGCGGAGACGC+CGG | + | tig0024143:34713-34732 | None:intergenic | 80.0% |
| !!! | ACCGGTTCGCGTCGGGGCGG+CGG | - | tig0024143:34974-34993 | Msa1414810:CDS | 80.0% |
| ! | ACCGCCGCCCCGACGCGAAC+CGG | + | tig0024143:34978-34997 | None:intergenic | 80.0% |
| !! | GGCGGAGACGCCGGTAGCGG+TGG | + | tig0024143:34704-34723 | None:intergenic | 80.0% |
| ! | GGCGGCGGAGACGCCGGTAG+CGG | + | tig0024143:34707-34726 | None:intergenic | 80.0% |
| ! | GCTACCGGCGTCTCCGCCGC+CGG | - | tig0024143:34706-34725 | Msa1414810:CDS | 80.0% |
| ! | AACGCCGGCGGCGGAGACGC+CGG | + | tig0024143:34713-34732 | None:intergenic | 80.0% |
| !!! | ACCGGTTCGCGTCGGGGCGG+CGG | - | tig0024143:34974-34993 | Msa1414810:CDS | 80.0% |
| ! | ACCGCCGCCCCGACGCGAAC+CGG | + | tig0024143:34978-34997 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024143 | gene | 34196 | 35038 | 34196 | ID=Msa1414810;Name=Msa1414810 |
| tig0024143 | mRNA | 34196 | 35038 | 34196 | ID=Msa1414810-mRNA-1;Parent=Msa1414810;Name=Msa1414810-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|280 |
| tig0024143 | exon | 34196 | 35038 | 34196 | ID=Msa1414810-mRNA-1:exon:22010;Parent=Msa1414810-mRNA-1 |
| tig0024143 | CDS | 34196 | 35038 | 34196 | ID=Msa1414810-mRNA-1:cds;Parent=Msa1414810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
