AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0841030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0841030 MtrunA17_Chr5g0410621 70.487 349 31 3 1 277 1 349 5.04e-145 410
Msa0841030 MtrunA17_Chr8g0382041 40.278 288 95 5 36 250 28 311 7.98e-64 203
Msa0841030 MtrunA17_Chr8g0375981 51.974 152 65 3 103 252 164 309 6.57e-53 175
Msa0841030 MtrunA17_Chr1g0161951 52.201 159 70 3 103 260 166 319 5.61e-51 170
Msa0841030 MtrunA17_Chr1g0161951 52.747 91 42 1 17 107 9 98 4.35e-24 99.4
Msa0841030 MtrunA17_Chr8g0365231 43.704 135 69 2 103 233 179 310 9.52e-34 124
Msa0841030 MtrunA17_Chr8g0365231 36.538 104 46 2 22 107 10 111 4.84e-11 62.0
Msa0841030 MtrunA17_Chr4g0028221 38.168 131 71 3 103 233 184 304 1.56e-25 102
Msa0841030 MtrunA17_Chr8g0340001 35.115 131 81 2 103 233 105 231 3.31e-25 100
Msa0841030 MtrunA17_Chr4g0054451 29.707 239 139 7 9 233 66 289 3.55e-23 96.3
Msa0841030 MtrunA17_Chr4g0054431 29.707 239 139 7 9 233 64 287 3.89e-23 95.9
Msa0841030 MtrunA17_Chr2g0327411 33.588 131 78 2 103 233 188 309 4.55e-21 90.5
Msa0841030 MtrunA17_Chr6g0461761 31.579 133 84 3 103 233 160 287 5.26e-21 90.1
Msa0841030 MtrunA17_Chr7g0252631 31.343 134 85 3 103 234 160 288 1.53e-20 89.0
Msa0841030 MtrunA17_Chr7g0252621 31.343 134 85 3 103 234 160 288 1.66e-20 89.0
Msa0841030 MtrunA17_Chr2g0323161 32.353 136 87 3 103 233 151 286 1.29e-19 86.3
Msa0841030 MtrunA17_Chr1g0180451 26.333 300 128 7 17 233 5 294 1.73e-19 86.3
Msa0841030 MtrunA17_Chr7g0252601 29.323 133 87 3 103 233 160 287 2.67e-19 85.5
Msa0841030 MtrunA17_Chr6g0461731 30.827 133 85 3 103 233 183 310 3.23e-19 85.5
Msa0841030 MtrunA17_Chr1g0206081 30.935 139 90 3 103 239 166 300 3.47e-19 85.5
Msa0841030 MtrunA17_Chr4g0023961 32.353 136 87 3 103 233 153 288 4.07e-19 85.1
Msa0841030 MtrunA17_Chr7g0264731 34.091 132 77 3 103 234 171 292 5.66e-18 82.0
Msa0841030 MtrunA17_Chr6g0486581 33.083 133 86 3 103 233 152 283 2.02e-16 77.4
Msa0841030 MtrunA17_Chr4g0072681 29.104 134 93 2 103 234 111 244 2.77e-16 76.3
Msa0841030 MtrunA17_Chr4g0072601 33.835 133 81 3 103 233 156 283 1.06e-15 75.5
Msa0841030 MtrunA17_Chr1g0206681 28.467 137 89 4 103 235 162 293 2.34e-15 74.7
Msa0841030 MtrunA17_Chr4g0071341 31.111 135 87 4 103 235 153 283 4.22e-15 73.6
Msa0841030 MtrunA17_Chr4g0072611 30.370 135 87 4 103 235 153 282 5.48e-14 70.5
Msa0841030 MtrunA17_Chr7g0258911 30.147 136 88 4 103 236 152 282 6.33e-14 70.1
Msa0841030 MtrunA17_Chr8g0390201 29.323 133 91 3 103 233 78 209 4.22e-13 67.0
Msa0841030 MtrunA17_Chr4g0072641 30.657 137 73 6 100 233 31 148 5.52e-13 65.1
Msa0841030 MtrunA17_Chr3g0096651 29.323 133 84 4 103 233 158 282 9.66e-13 67.0
Msa0841030 MtrunA17_Chr8g0374231 29.730 111 73 2 130 239 1 107 1.71e-12 62.8
Msa0841030 MtrunA17_Chr3g0122031 29.323 133 81 4 103 233 156 277 7.59e-12 64.3
Msa0841030 MtrunA17_Chr3g0122021 29.323 133 81 4 103 233 156 277 9.36e-12 63.9
Msa0841030 MtrunA17_Chr2g0303861 34.579 107 68 1 19 123 6 112 9.52e-12 63.9
Msa0841030 MtrunA17_Chr2g0303861 25.833 120 78 4 103 220 158 268 2.64e-11 62.8
Msa0841030 MtrunA17_Chr2g0303721 24.444 135 91 4 103 237 151 274 1.05e-11 63.9
Msa0841030 MtrunA17_Chr4g0072671 28.358 134 91 4 103 233 154 285 1.06e-11 63.9
Msa0841030 MtrunA17_Chr2g0299061 27.068 133 95 2 103 233 154 286 1.32e-11 63.5
Msa0841030 MtrunA17_Chr7g0235541 25.833 120 83 2 103 222 86 199 1.68e-11 62.4
Msa0841030 MtrunA17_Chr8g0377841 29.851 134 82 4 103 234 159 282 2.56e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0841030 AT1G32170.1 69.935 153 44 1 103 255 165 315 8.35e-76 234
Msa0841030 AT1G32170.1 46.154 130 66 2 12 137 1 130 1.70e-25 103
Msa0841030 AT4G18990.2 58.025 162 59 1 103 255 99 260 1.35e-65 206
Msa0841030 AT4G18990.1 58.025 162 59 1 103 255 173 334 1.47e-64 206
Msa0841030 AT4G18990.1 67.606 71 23 0 36 106 34 104 1.43e-24 101
Msa0841030 AT2G01850.1 48.837 172 83 2 103 273 164 331 3.29e-51 171
Msa0841030 AT2G01850.1 54.762 84 35 1 27 107 13 96 5.49e-21 91.3
Msa0841030 AT1G14720.1 46.784 171 87 1 103 273 164 330 2.33e-49 166
Msa0841030 AT1G14720.1 46.809 94 47 1 17 107 3 96 4.60e-22 94.0
Msa0841030 AT1G10550.1 43.796 137 72 2 103 234 174 310 3.59e-32 120
Msa0841030 AT4G13090.1 38.168 131 79 1 103 233 160 288 4.54e-30 115
Msa0841030 AT3G25050.1 35.878 131 80 2 103 233 163 289 2.15e-27 107
Msa0841030 AT4G13080.1 26.298 289 134 7 18 233 9 291 3.40e-27 107
Msa0841030 AT4G37800.1 36.842 133 78 2 103 234 163 290 2.83e-24 99.4
Msa0841030 AT5G13870.2 31.579 133 84 3 103 233 160 287 7.18e-24 98.6
Msa0841030 AT5G13870.1 31.579 133 84 3 103 233 160 287 7.18e-24 98.6
Msa0841030 AT5G13870.3 31.579 133 84 3 103 233 160 287 7.18e-24 98.6
Msa0841030 AT5G65730.1 37.594 133 75 3 103 233 164 290 8.23e-24 98.2
Msa0841030 AT3G44990.1 36.641 131 73 2 103 233 173 293 9.78e-22 92.4
Msa0841030 AT2G06850.2 30.075 133 86 3 103 233 103 230 1.17e-21 91.3
Msa0841030 AT2G06850.1 30.075 133 86 3 103 233 163 290 4.18e-21 90.9
Msa0841030 AT4G28850.1 34.783 138 80 5 103 234 155 288 1.82e-19 86.3
Msa0841030 AT4G03210.2 30.827 133 89 2 103 234 127 257 2.57e-19 85.5
Msa0841030 AT4G03210.1 30.827 133 89 2 103 234 155 285 4.36e-19 85.1
Msa0841030 AT3G23730.1 34.328 134 83 4 103 233 155 286 9.75e-19 84.3
Msa0841030 AT1G11545.1 32.374 139 86 4 103 237 169 303 2.29e-18 83.6
Msa0841030 AT4G30290.1 32.836 134 79 4 103 234 153 277 2.57e-18 82.8
Msa0841030 AT2G36870.1 34.586 133 73 3 103 233 177 297 7.92e-18 82.0
Msa0841030 AT5G57550.1 32.353 136 76 5 103 233 158 282 1.25e-17 81.3
Msa0841030 AT4G30280.1 32.090 134 80 4 103 234 158 282 3.56e-16 77.0
Msa0841030 AT5G48070.1 30.597 134 82 4 103 234 158 282 6.63e-16 76.3
Msa0841030 AT4G14130.1 32.836 134 82 5 103 233 156 284 7.18e-16 76.3
Msa0841030 AT5G57560.1 31.579 133 87 4 103 233 151 281 2.74e-15 74.7
Msa0841030 AT5G57540.1 29.371 143 78 4 103 235 154 283 4.74e-15 73.9
Msa0841030 AT1G65310.1 30.827 133 81 4 103 233 158 281 5.02e-15 73.9
Msa0841030 AT1G65310.2 30.827 133 81 4 103 233 180 303 7.69e-15 73.6
Msa0841030 AT2G14620.2 27.007 137 91 4 103 235 115 246 1.92e-14 71.6
Msa0841030 AT2G14620.1 27.007 137 91 4 103 235 165 296 1.94e-14 72.4
Msa0841030 AT4G25810.1 31.579 133 86 4 103 233 154 283 1.94e-14 72.0
Msa0841030 AT5G57530.1 27.972 143 80 4 103 235 155 284 2.18e-14 72.0
Msa0841030 AT2G14620.3 27.007 137 91 4 103 235 104 235 2.24e-14 71.2
Msa0841030 AT2G18800.1 30.496 141 88 4 103 233 156 296 5.12e-14 71.2
Msa0841030 AT4G30270.1 28.571 133 74 4 103 233 152 265 9.74e-14 70.1
Msa0841030 AT4G25820.1 28.571 140 87 4 101 235 156 287 5.17e-13 68.2

Find 105 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTAACACCTCCCTAAT+TGG 0.183555 5_4:-16939148 None:intergenic
TGAAAATAGGAAATGAGTTT+TGG 0.219960 5_4:-16934779 None:intergenic
GGACGGTTCCTGATCATTTA+TGG 0.225464 5_4:+16939900 Msa0841030:three_prime_UTR
AATTAAGTGGTTATATAAAT+TGG 0.236135 5_4:+16939743 Msa0841030:three_prime_UTR
AGCGGAGAAACAAAGATTTA+AGG 0.248971 5_4:+16939528 Msa0841030:CDS
ACATTGATGAAGTTCCAATT+AGG 0.258577 5_4:+16939134 Msa0841030:CDS
CGATATGGGATGCATCAAAT+TGG 0.261839 5_4:+16939221 Msa0841030:CDS
CTTATTGCTATGATACAATT+AGG 0.266532 5_4:+16939470 Msa0841030:CDS
GAATAAGTCAAAATACATTA+TGG 0.269567 5_4:+16939878 Msa0841030:three_prime_UTR
TGTCATTGTATGCTACGATA+TGG 0.280723 5_4:+16939206 Msa0841030:CDS
TTACACTCTGGTGGTGGTAT+AGG 0.295113 5_4:-16939496 None:intergenic
GAGACCGGAAGGTTGAAATT+TGG 0.317179 5_4:+16939550 Msa0841030:CDS
TCCACCAAATTTCAACCTTC+CGG 0.321360 5_4:-16939554 None:intergenic
GAGCTTCAAGATGGACGTTT+TGG 0.327938 5_4:-16939375 None:intergenic
TACAATGACATTGGCTTGAC+TGG 0.352588 5_4:-16939193 None:intergenic
CATTGATGAAGTTCCAATTA+GGG 0.352975 5_4:+16939135 Msa0841030:CDS
CGCATTGCGAGGCGGCGCAT+GGG 0.354309 5_4:-16939418 None:intergenic
TACACTCTGGTGGTGGTATA+GGG 0.364239 5_4:-16939495 None:intergenic
GGTGTTAAGAAGTGAGGAAA+TGG 0.365576 5_4:+16939159 Msa0841030:CDS
GGGGATATTGGTCTTTGATT+GGG 0.370455 5_4:-16934610 None:intergenic
TCGCATTGCGAGGCGGCGCA+TGG 0.371340 5_4:-16939419 None:intergenic
AGGGGATATTGGTCTTTGAT+TGG 0.373988 5_4:-16934611 None:intergenic
GAAGCCACCGCCGACATTCT+AGG 0.386095 5_4:+16939575 Msa0841030:CDS
GGGTCGGATACTTCTTGAAT+TGG 0.394064 5_4:-16939337 None:intergenic
CTGAGCAACCCTTGAGGACT+AGG 0.407962 5_4:-16939309 None:intergenic
AATAAGTCAAAATACATTAT+GGG 0.425904 5_4:+16939879 Msa0841030:three_prime_UTR
GCTTAAACAAAATAGTGTTT+TGG 0.430895 5_4:+16939767 Msa0841030:three_prime_UTR
AAAGAACCAAGTTAATTGAT+AGG 0.447398 5_4:-16934641 None:intergenic
GAACAAGAAAACAAAGAAAG+TGG 0.447911 5_4:+16934688 Msa0841030:five_prime_UTR
TAGGAAAATCAAGGGGATAT+TGG 0.450910 5_4:-16934622 None:intergenic
TTAAATCTTTGTTTCTCCGC+TGG 0.456783 5_4:-16939526 None:intergenic
GATGGTTATTCTCATCTCTT+CGG 0.463358 5_4:+16934871 Msa0841030:CDS
ATCATACCTTACGTTGTTGT+GGG 0.467592 5_4:+16934749 Msa0841030:CDS
GCATTGCGAGGCGGCGCATG+GGG 0.468919 5_4:-16939417 None:intergenic
AACGTTGTTCGTTCCTCCGA+TGG 0.474311 5_4:+16934901 Msa0841030:CDS
GTTAATTGATAGGAAAATCA+AGG 0.480195 5_4:-16934631 None:intergenic
GATTGACGTAGATAATTAAG+TGG 0.483079 5_4:+16939730 Msa0841030:three_prime_UTR
TCCTTAAATTCAACAACAAA+AGG 0.483638 5_4:-16939286 None:intergenic
GTGTTAAGAAGTGAGGAAAT+GGG 0.483994 5_4:+16939160 Msa0841030:CDS
GCATCAAATTGGGCAACATC+GGG 0.487694 5_4:+16939232 Msa0841030:CDS
GCAACCATACCCTTCAATGA+TGG 0.489672 5_4:+16934853 Msa0841030:CDS
ATGAGAATAACCATCATTGA+AGG 0.494626 5_4:-16934863 None:intergenic
TTAGTGTGTGTTGTTTCAGT+AGG 0.495477 5_4:+16939807 Msa0841030:three_prime_UTR
ACCGGAAGGTTGAAATTTGG+TGG 0.496307 5_4:+16939553 Msa0841030:CDS
AGGTACGTAGAATATAAAAT+CGG 0.499405 5_4:+16939827 Msa0841030:three_prime_UTR
CCTTGATCGGTGTCATCTAC+CGG 0.499492 5_4:-16939619 None:intergenic
AAGACCAACCATAAATGATC+AGG 0.501134 5_4:-16939908 None:intergenic
TGCATCAAATTGGGCAACAT+CGG 0.504906 5_4:+16939231 Msa0841030:CDS
CATCATACCTTACGTTGTTG+TGG 0.506997 5_4:+16934748 Msa0841030:CDS
CATAGTCTTGAGCTTCAAGA+TGG 0.507045 5_4:-16939384 None:intergenic
GATATGGGATGCATCAAATT+GGG 0.507368 5_4:+16939222 Msa0841030:CDS
CCCGCCTAGAATGTCGGCGG+TGG 0.511235 5_4:-16939579 None:intergenic
GTTCGTTCCTCCGATGGCAA+CGG 0.511531 5_4:+16934907 Msa0841030:CDS
TATTCTCATCTCTTCGGAGA+TGG 0.518704 5_4:+16934877 Msa0841030:CDS
AAACAAAGATTTAAGGAGAC+CGG 0.526680 5_4:+16939535 Msa0841030:CDS
TTACCATCGAATTATACTGC+TGG 0.532109 5_4:+16935135 Msa0841030:CDS
GGCGGAACCTTCGCATTGCG+AGG 0.537482 5_4:-16939429 None:intergenic
CCACCGCCGACATTCTAGGC+GGG 0.539580 5_4:+16939579 Msa0841030:CDS
ATAACCATCATTGAAGGGTA+TGG 0.540096 5_4:-16934857 None:intergenic
ATTTAAGGACCTAGTCCTCA+AGG 0.541774 5_4:+16939300 Msa0841030:CDS
TGTAACGATCGAGGAGGAGT+TGG 0.545650 5_4:-16934933 None:intergenic
TAGGGAGGTGTTAAGAAGTG+AGG 0.547833 5_4:+16939153 Msa0841030:CDS
GGTTCCTGATCATTTATGGT+TGG 0.547984 5_4:+16939904 Msa0841030:three_prime_UTR
GTCATTGTATGCTACGATAT+GGG 0.550961 5_4:+16939207 Msa0841030:CDS
TCATCACATATCACCTTGAT+CGG 0.551054 5_4:-16939632 None:intergenic
CTCCTCCTCGATCGTTACAC+CGG 0.556457 5_4:+16934937 Msa0841030:CDS
CCGGTAGATGACACCGATCA+AGG 0.556925 5_4:+16939619 Msa0841030:CDS
TGCGCCGCCTCGCAATGCGA+AGG 0.560204 5_4:+16939422 Msa0841030:CDS
CATTGAAGGGTATGGTTGCA+AGG 0.562725 5_4:-16934849 None:intergenic
GTCGGAGCAAACGTCGGGGT+CGG 0.563948 5_4:-16939353 None:intergenic
TCAAATTGGGCAACATCGGG+TGG 0.571083 5_4:+16939235 Msa0841030:CDS
CAAGAAAACAAAGAAAGTGG+AGG 0.571223 5_4:+16934691 Msa0841030:five_prime_UTR
GAGTTGGACACCGTTGCCAT+CGG 0.573412 5_4:-16934917 None:intergenic
GGGTGGTCGTACTTCAACTC+CGG 0.575069 5_4:+16939600 Msa0841030:CDS
CACCGCCGACATTCTAGGCG+GGG 0.578126 5_4:+16939580 Msa0841030:CDS
TTAATTGATAGGAAAATCAA+GGG 0.579889 5_4:-16934630 None:intergenic
TATGTTCCCACAACAACGTA+AGG 0.595015 5_4:-16934755 None:intergenic
ATAATATTACACTCTGGTGG+TGG 0.597029 5_4:-16939502 None:intergenic
ATCGTAGCATACAATGACAT+TGG 0.601555 5_4:-16939202 None:intergenic
GGAACCTTCGCATTGCGAGG+CGG 0.602262 5_4:-16939426 None:intergenic
GACCACCCCGCCTAGAATGT+CGG 0.605547 5_4:-16939585 None:intergenic
ACAATGACATTGGCTTGACT+GGG 0.607221 5_4:-16939192 None:intergenic
CATTGCGAGGCGGCGCATGG+GGG 0.608687 5_4:-16939416 None:intergenic
TTTAAGGACCTAGTCCTCAA+GGG 0.620357 5_4:+16939301 Msa0841030:CDS
TTGGACACCGTTGCCATCGG+AGG 0.624400 5_4:-16934914 None:intergenic
ATTCCAGCAGTATAATTCGA+TGG 0.624666 5_4:-16935138 None:intergenic
AATTACCGGTGTAACGATCG+AGG 0.634816 5_4:-16934942 None:intergenic
TCATCAAATATGTATCAACA+TGG 0.635106 5_4:+16935090 Msa0841030:CDS
AAGAGTAGTACATGAAACGT+TGG 0.637745 5_4:-16939450 None:intergenic
AAAGATTTAAGGAGACCGGA+AGG 0.638530 5_4:+16939539 Msa0841030:CDS
TGAGAATAACCATCATTGAA+GGG 0.639194 5_4:-16934862 None:intergenic
AGTCAAAATACATTATGGGA+CGG 0.640377 5_4:+16939883 Msa0841030:three_prime_UTR
CGCCGACATTCTAGGCGGGG+TGG 0.642323 5_4:+16939583 Msa0841030:CDS
AGTAGTACATGAAACGTTGG+CGG 0.642577 5_4:-16939447 None:intergenic
GGAATAATATTACACTCTGG+TGG 0.643905 5_4:-16939505 None:intergenic
TGATGAAGTTCCAATTAGGG+AGG 0.646761 5_4:+16939138 Msa0841030:CDS
GCTGGAATAATATTACACTC+TGG 0.647855 5_4:-16939508 None:intergenic
GATCAACTGAGCAACCCTTG+AGG 0.676059 5_4:-16939315 None:intergenic
AGAGTGTAATATTATTCCAG+CGG 0.676164 5_4:+16939510 Msa0841030:CDS
CACCCCGCCTAGAATGTCGG+CGG 0.677092 5_4:-16939582 None:intergenic
GCCACCGCCGACATTCTAGG+CGG 0.701881 5_4:+16939578 Msa0841030:CDS
TTTGGTCGGAGCAAACGTCG+GGG 0.702480 5_4:-16939357 None:intergenic
TTAAGAAGTGAGGAAATGGG+AGG 0.722839 5_4:+16939163 Msa0841030:CDS
TAATTGATAGGAAAATCAAG+GGG 0.739337 5_4:-16934629 None:intergenic
TACCGGTGTAACGATCGAGG+AGG 0.746595 5_4:-16934939 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAAAATTAAAAAAT+TGG - chr5_4:16938534-16938553 None:intergenic 0.0%
!! TGATTTAATAATTTAATTAC+CGG - chr5_4:16934959-16934978 None:intergenic 10.0%
!!! TAATTGATTATGTTTTTTAT+AGG + chr5_4:16935054-16935073 Msa0841030:intron 10.0%
!!! TATATAAATATTTTTTGTGT+TGG + chr5_4:16935453-16935472 Msa0841030:intron 10.0%
!! GAAAATATAAAATAAAAAAG+AGG - chr5_4:16936442-16936461 None:intergenic 10.0%
!! AAAAATTTGAAAAAAAATTC+AGG + chr5_4:16937606-16937625 Msa0841030:intron 10.0%
!!! AAATTTTTTTTACAAAATTC+AGG + chr5_4:16937755-16937774 Msa0841030:intron 10.0%
!! TAATATTCAAAATACAAAAA+AGG + chr5_4:16937782-16937801 Msa0841030:intron 10.0%
!!! ATTTTGAAAAAAAAATAATC+TGG + chr5_4:16937875-16937894 Msa0841030:intron 10.0%
!! AAAAATATGGAAAATTAATT+TGG + chr5_4:16938164-16938183 Msa0841030:intron 10.0%
!!! AAATTTTGAAAAAAATAATC+TGG + chr5_4:16938296-16938315 Msa0841030:intron 10.0%
!!! TAATCTGAATTTTTATAAAT+TGG + chr5_4:16938364-16938383 Msa0841030:intron 10.0%
!!! TTTTTCTACAAAAAAAAATT+TGG - chr5_4:16938000-16938019 None:intergenic 10.0%
!!! GGATTTAAAATTAATAAAAT+TGG + chr5_4:16938672-16938691 Msa0841030:intron 10.0%
!! TATTTAACAAAATATTAGTA+AGG - chr5_4:16939043-16939062 None:intergenic 10.0%
!! ATAGAGAAAAAAATGAAAAT+AGG - chr5_4:16934795-16934814 None:intergenic 15.0%
!!! AGATTGTTTAATATTTTATG+TGG + chr5_4:16935277-16935296 Msa0841030:intron 15.0%
!! TATCATCTTATACTTTAAAT+TGG + chr5_4:16935970-16935989 Msa0841030:intron 15.0%
!! TTTAAAAGGTAATTTGATTA+TGG - chr5_4:16936125-16936144 None:intergenic 15.0%
!! GAATGTTAGTATAAAATTAT+AGG + chr5_4:16936394-16936413 Msa0841030:intron 15.0%
!!! TTCTAAAATGAGAAAAATAA+TGG - chr5_4:16936751-16936770 None:intergenic 15.0%
!!! TTATTTTTCTCATTTTAGAA+AGG + chr5_4:16936751-16936770 Msa0841030:intron 15.0%
!!! TTTTTTCTTCATTTTCTTTA+TGG + chr5_4:16936861-16936880 Msa0841030:intron 15.0%
!!! GGATTTAAAATTAATAAAAG+TGG - chr5_4:16937423-16937442 None:intergenic 15.0%
!! AAATTAAATTTCAGATACTT+AGG - chr5_4:16938589-16938608 None:intergenic 15.0%
!!! GGAATTTTTTTTTTAAAATC+TGG + chr5_4:16937627-16937646 Msa0841030:intron 15.0%
!!! AATCTGAATTTTTTCTAAAT+TGG + chr5_4:16937944-16937963 Msa0841030:intron 15.0%
!!! TATCGAAATTTTACAAAAAA+AGG + chr5_4:16938081-16938100 Msa0841030:intron 15.0%
!!! AAAAAATTCATAGTCTTTTA+CGG + chr5_4:16938130-16938149 Msa0841030:intron 15.0%
!!! GGATTTTTTACAAAAAAATA+TGG + chr5_4:16938151-16938170 Msa0841030:intron 15.0%
!! AATTAAGTGGTTATATAAAT+TGG + chr5_4:16939743-16939762 Msa0841030:three_prime_UTR 15.0%
!! AATAAGTCAAAATACATTAT+GGG + chr5_4:16939879-16939898 Msa0841030:three_prime_UTR 15.0%
!! TTAATTGATAGGAAAATCAA+GGG - chr5_4:16934633-16934652 None:intergenic 20.0%
!!! AATTATGTTTTGTTTCTTGA+AGG + chr5_4:16935004-16935023 Msa0841030:intron 20.0%
!!! ATTATGTTTTTTATAGGTTC+TGG + chr5_4:16935060-16935079 Msa0841030:intron 20.0%
!!! CAATCTTTTTCTAACAAAAA+AGG - chr5_4:16935263-16935282 None:intergenic 20.0%
!! GTAAGATATATGAAATGAAA+CGG + chr5_4:16935536-16935555 Msa0841030:intron 20.0%
!! ATATTTCATTTGTGTGTTTA+TGG + chr5_4:16935862-16935881 Msa0841030:intron 20.0%
!!! TTATGGTTTACTTCAAATTT+TGG + chr5_4:16935879-16935898 Msa0841030:intron 20.0%
!! GACAATTAATATTCTACTAT+TGG - chr5_4:16935928-16935947 None:intergenic 20.0%
!! GAAACATATAGAATTCTTAT+TGG - chr5_4:16936352-16936371 None:intergenic 20.0%
!!! CCATAGTTTTTATTACTAAA+GGG + chr5_4:16936682-16936701 Msa0841030:intron 20.0%
!!! TTAGAAAGGTATAATTAATC+TGG + chr5_4:16936765-16936784 Msa0841030:intron 20.0%
!! GTAATTAGCCATTATTAATT+TGG + chr5_4:16936978-16936997 Msa0841030:intron 20.0%
!! CTTAGATAAAGGAAAATTAA+TGG + chr5_4:16937288-16937307 Msa0841030:intron 20.0%
!! TTGACACATTTAAAAGTTAA+GGG - chr5_4:16938732-16938751 None:intergenic 20.0%
!! ATTGACACATTTAAAAGTTA+AGG - chr5_4:16938731-16938750 None:intergenic 20.0%
!!! AACTTTTAAATGTGTCAATT+TGG + chr5_4:16937365-16937384 Msa0841030:intron 20.0%
!!! AAAAAATTCAGAGTCTTTTA+CGG + chr5_4:16937831-16937850 Msa0841030:intron 20.0%
!! TCCAGATTTAAAAAAAATTC+TGG + chr5_4:16938037-16938056 Msa0841030:intron 20.0%
!!! TCCAGAATTTTTTTTAAATC+TGG - chr5_4:16938041-16938060 None:intergenic 20.0%
!!! AGGACATTTTTTTTAAAATC+TGG - chr5_4:16938461-16938480 None:intergenic 20.0%
!!! AACTTTTAAATGTGTCAATT+TGG - chr5_4:16937365-16937384 None:intergenic 20.0%
!! ATTGACACATTTAAAAGTTA+AGG + chr5_4:16938731-16938750 Msa0841030:intron 20.0%
!! TTGACACATTTAAAAGTTAA+GGG + chr5_4:16938732-16938751 Msa0841030:intron 20.0%
!!! TATTGTGCATGAATTAATTT+TGG - chr5_4:16938807-16938826 None:intergenic 20.0%
!! AATTCATGCACAATAAATTA+AGG + chr5_4:16938812-16938831 Msa0841030:intron 20.0%
!! TAAGTTTACATATATTCACA+TGG - chr5_4:16939005-16939024 None:intergenic 20.0%
!! AAAATATTAGTAAGGTAAGT+AGG - chr5_4:16939035-16939054 None:intergenic 20.0%
!! GAATAAGTCAAAATACATTA+TGG + chr5_4:16939878-16939897 Msa0841030:three_prime_UTR 20.0%
! TAATTGATAGGAAAATCAAG+GGG - chr5_4:16934632-16934651 None:intergenic 25.0%
! GTTAATTGATAGGAAAATCA+AGG - chr5_4:16934634-16934653 None:intergenic 25.0%
!! GATTTTCCTATCAATTAACT+TGG + chr5_4:16934635-16934654 Msa0841030:five_prime_UTR 25.0%
! AAAGAACCAAGTTAATTGAT+AGG - chr5_4:16934644-16934663 None:intergenic 25.0%
!! GAAAATAGGAAATGAGTTTT+GGG - chr5_4:16934781-16934800 None:intergenic 25.0%
!! TGAAAATAGGAAATGAGTTT+TGG - chr5_4:16934782-16934801 None:intergenic 25.0%
! TCATCAAATATGTATCAACA+TGG + chr5_4:16935090-16935109 Msa0841030:CDS 25.0%
!! AGTTAAACTTTCCTTTTACT+TGG + chr5_4:16935325-16935344 Msa0841030:intron 25.0%
! ACAAGCAAAGTCAATTATTA+CGG + chr5_4:16935366-16935385 Msa0841030:intron 25.0%
!!! AAACTTTGAGGTAAACAAAT+TGG - chr5_4:16935407-16935426 None:intergenic 25.0%
!! TTACCTCAAAGTTTTCAAAA+AGG + chr5_4:16935413-16935432 Msa0841030:intron 25.0%
!!! TTTCCTTTTTGAAAACTTTG+AGG - chr5_4:16935419-16935438 None:intergenic 25.0%
! TGATTATGGTAAAATCCAAA+AGG - chr5_4:16936111-16936130 None:intergenic 25.0%
!! CTTGCATTTGTTAGTTTAAA+AGG - chr5_4:16936139-16936158 None:intergenic 25.0%
! TGATAATATGACTCTAACTT+AGG - chr5_4:16936184-16936203 None:intergenic 25.0%
! GATGAAACTTAAGTATTATG+TGG - chr5_4:16936374-16936393 None:intergenic 25.0%
! AAAAAAGAGGACAGTATTAT+AGG - chr5_4:16936429-16936448 None:intergenic 25.0%
! TTTCTTTCCTTATGTGTTTA+TGG + chr5_4:16936458-16936477 Msa0841030:intron 25.0%
! TTGGATATTAACTAATAACG+TGG + chr5_4:16936532-16936551 Msa0841030:intron 25.0%
!! GCCATAGTTTTTATTACTAA+AGG + chr5_4:16936681-16936700 Msa0841030:intron 25.0%
! CCCTTTAGTAATAAAAACTA+TGG - chr5_4:16936685-16936704 None:intergenic 25.0%
! GTAAGAAACAAAATTCAAGT+TGG - chr5_4:16936804-16936823 None:intergenic 25.0%
!!! AAACTATCAATTCTAGAGTT+TGG - chr5_4:16937015-16937034 None:intergenic 25.0%
! AAGGATAATATACTAGATTG+TGG + chr5_4:16937066-16937085 Msa0841030:intron 25.0%
! AGGATAATATACTAGATTGT+GGG + chr5_4:16937067-16937086 Msa0841030:intron 25.0%
! GGGAAGAAAAAATAAGTTAA+GGG - chr5_4:16938763-16938782 None:intergenic 25.0%
! TGGGAAGAAAAAATAAGTTA+AGG - chr5_4:16938762-16938781 None:intergenic 25.0%
! GATGAAGAAAACAAAAGATA+AGG - chr5_4:16938703-16938722 None:intergenic 25.0%
!!! TTTTGTTTTCTTCATCGATT+TGG + chr5_4:16937396-16937415 Msa0841030:intron 25.0%
!!! TTTTGTTTTCTTCATCGATT+TGG - chr5_4:16937396-16937415 None:intergenic 25.0%
! GATGAAGAAAACAAAAGATA+AGG + chr5_4:16938703-16938722 Msa0841030:intron 25.0%
! TGGGAAGAAAAAATAAGTTA+AGG + chr5_4:16938762-16938781 Msa0841030:intron 25.0%
! GGGAAGAAAAAATAAGTTAA+GGG + chr5_4:16938763-16938782 Msa0841030:intron 25.0%
! TTTAATTAGGTGGAACTAAT+GGG - chr5_4:16938948-16938967 None:intergenic 25.0%
!!! ACTAGATTTCGAGTTTAATT+AGG - chr5_4:16938961-16938980 None:intergenic 25.0%
! AATTAAACTCGAAATCTAGT+TGG + chr5_4:16938961-16938980 Msa0841030:intron 25.0%
!!! TCCTTTTGTTGTTGAATTTA+AGG + chr5_4:16939285-16939304 Msa0841030:CDS 25.0%
! TCCTTAAATTCAACAACAAA+AGG - chr5_4:16939289-16939308 None:intergenic 25.0%
! CTTATTGCTATGATACAATT+AGG + chr5_4:16939470-16939489 Msa0841030:CDS 25.0%
!! GCTTAAACAAAATAGTGTTT+TGG + chr5_4:16939767-16939786 Msa0841030:three_prime_UTR 25.0%
! AGGTACGTAGAATATAAAAT+CGG + chr5_4:16939827-16939846 Msa0841030:three_prime_UTR 25.0%
GAACAAGAAAACAAAGAAAG+TGG + chr5_4:16934688-16934707 Msa0841030:five_prime_UTR 30.0%
TGAGAATAACCATCATTGAA+GGG - chr5_4:16934865-16934884 None:intergenic 30.0%
ATGAGAATAACCATCATTGA+AGG - chr5_4:16934866-16934885 None:intergenic 30.0%
! TAAACTTTCCTTTTACTTGG+TGG + chr5_4:16935328-16935347 Msa0841030:intron 30.0%
AAAATTCTCCACCAAGTAAA+AGG - chr5_4:16935339-16935358 None:intergenic 30.0%
! AATTGACTTTGCTTGTTCTT+TGG - chr5_4:16935362-16935381 None:intergenic 30.0%
!!! TTGTGTTGGAAGAGTTTTTT+TGG + chr5_4:16935467-16935486 Msa0841030:intron 30.0%
!!! TGTGTTGGAAGAGTTTTTTT+GGG + chr5_4:16935468-16935487 Msa0841030:intron 30.0%
! TTGTTGTTACAGACATCAAA+CGG + chr5_4:16935603-16935622 Msa0841030:intron 30.0%
CAAACAAACTTGTATGGAAA+TGG + chr5_4:16935702-16935721 Msa0841030:intron 30.0%
! ATCTATGGTATCCTTTTGTT+GGG - chr5_4:16935773-16935792 None:intergenic 30.0%
! TATCTATGGTATCCTTTTGT+TGG - chr5_4:16935774-16935793 None:intergenic 30.0%
ACCATAGATATAGCATTCTT+TGG + chr5_4:16935784-16935803 Msa0841030:intron 30.0%
TCCAAAGAATGCTATATCTA+TGG - chr5_4:16935788-16935807 None:intergenic 30.0%
TACTACATTCATGTCATGTA+AGG + chr5_4:16935838-16935857 Msa0841030:intron 30.0%
TCAATATATCTCCACAACTT+AGG + chr5_4:16936040-16936059 Msa0841030:intron 30.0%
! TCACTCAAAAATTAGTCTCA+TGG - chr5_4:16936078-16936097 None:intergenic 30.0%
CAACTCTTCTAACATTATGT+TGG + chr5_4:16936202-16936221 Msa0841030:intron 30.0%
!! ACGGTAAAATAGTTTTACAC+CGG + chr5_4:16936323-16936342 Msa0841030:intron 30.0%
ATAGAATTCTTATTGGATGC+CGG - chr5_4:16936345-16936364 None:intergenic 30.0%
TTCCTTATGTGTTTATGGAT+TGG + chr5_4:16936463-16936482 Msa0841030:intron 30.0%
AACCAATCCATAAACACATA+AGG - chr5_4:16936468-16936487 None:intergenic 30.0%
! TTCATGTTTGACTTAATGTG+AGG + chr5_4:16936576-16936595 Msa0841030:intron 30.0%
! TCATGTTTGACTTAATGTGA+GGG + chr5_4:16936577-16936596 Msa0841030:intron 30.0%
!!! AAAGGGATGATTGTTTTAGA+TGG + chr5_4:16936699-16936718 Msa0841030:intron 30.0%
GAGAAGGACCAAATTAATAA+TGG - chr5_4:16936989-16937008 None:intergenic 30.0%
! TTTGATAATCCTGATGTGAA+AGG + chr5_4:16937032-16937051 Msa0841030:intron 30.0%
GGATAATATACTAGATTGTG+GGG + chr5_4:16937068-16937087 Msa0841030:intron 30.0%
!! AACGTGTGCTTTTGTTTAAA+TGG - chr5_4:16937213-16937232 None:intergenic 30.0%
!!! TGCCAATTTTAATTGGACTT+TGG - chr5_4:16937255-16937274 None:intergenic 30.0%
!! CTAGTTGTGCCAATTTTAAT+TGG - chr5_4:16937262-16937281 None:intergenic 30.0%
ACTAGCTAGAACTTAGATAA+AGG + chr5_4:16937277-16937296 Msa0841030:intron 30.0%
TAATGGCTTAATACATGCTT+TGG + chr5_4:16937305-16937324 Msa0841030:intron 30.0%
AATTTCAGATACTTAGGTGT+TGG - chr5_4:16938595-16938614 None:intergenic 30.0%
AATTTCAGATACTTAGGTGT+TGG + chr5_4:16938595-16938614 Msa0841030:intron 30.0%
!!! TTTTGGCTTAATACATGCTT+TGG - chr5_4:16938790-16938809 None:intergenic 30.0%
GTTTAATTAGGTGGAACTAA+TGG - chr5_4:16938949-16938968 None:intergenic 30.0%
!! AGATTTCGAGTTTAATTAGG+TGG - chr5_4:16938958-16938977 None:intergenic 30.0%
ACATTGATGAAGTTCCAATT+AGG + chr5_4:16939134-16939153 Msa0841030:CDS 30.0%
CATTGATGAAGTTCCAATTA+GGG + chr5_4:16939135-16939154 Msa0841030:CDS 30.0%
AGAGTGTAATATTATTCCAG+CGG + chr5_4:16939510-16939529 Msa0841030:CDS 30.0%
AAACAAAGATTTAAGGAGAC+CGG + chr5_4:16939535-16939554 Msa0841030:CDS 30.0%
GATTGACGTAGATAATTAAG+TGG + chr5_4:16939730-16939749 Msa0841030:three_prime_UTR 30.0%
AGTCAAAATACATTATGGGA+CGG + chr5_4:16939883-16939902 Msa0841030:three_prime_UTR 30.0%
TAGGAAAATCAAGGGGATAT+TGG - chr5_4:16934625-16934644 None:intergenic 35.0%
CAAGAAAACAAAGAAAGTGG+AGG + chr5_4:16934691-16934710 Msa0841030:five_prime_UTR 35.0%
ATCATACCTTACGTTGTTGT+GGG + chr5_4:16934749-16934768 Msa0841030:CDS 35.0%
ATAACCATCATTGAAGGGTA+TGG - chr5_4:16934860-16934879 None:intergenic 35.0%
GATGGTTATTCTCATCTCTT+CGG + chr5_4:16934871-16934890 Msa0841030:CDS 35.0%
TTACCATCGAATTATACTGC+TGG + chr5_4:16935135-16935154 Msa0841030:CDS 35.0%
ATTCCAGCAGTATAATTCGA+TGG - chr5_4:16935141-16935160 None:intergenic 35.0%
CGGTTTCAAACAAACTTGTA+TGG + chr5_4:16935696-16935715 Msa0841030:intron 35.0%
GACCACACAAGTTTAGTATT+GGG - chr5_4:16935906-16935925 None:intergenic 35.0%
ATATATTGAGACGCTTACTG+TGG - chr5_4:16936029-16936048 None:intergenic 35.0%
AAGGCAAATAACCTAAGTTG+TGG - chr5_4:16936054-16936073 None:intergenic 35.0%
! CAAAAATTAGTCTCATGGCA+AGG - chr5_4:16936073-16936092 None:intergenic 35.0%
! AGTGACAACTCTATTCCTTT+TGG + chr5_4:16936093-16936112 Msa0841030:intron 35.0%
! TATTTTACCGTGACAACAAG+TGG - chr5_4:16936314-16936333 None:intergenic 35.0%
CTTGTGATTGCAAAAGTTTC+CGG + chr5_4:16936489-16936508 Msa0841030:intron 35.0%
TTGTGATTGCAAAAGTTTCC+GGG + chr5_4:16936490-16936509 Msa0841030:intron 35.0%
TATGTGTGTATTTGTGGCTT+TGG + chr5_4:16936513-16936532 Msa0841030:intron 35.0%
! CATGTTTGACTTAATGTGAG+GGG + chr5_4:16936578-16936597 Msa0841030:intron 35.0%
! ATGTTTGACTTAATGTGAGG+GGG + chr5_4:16936579-16936598 Msa0841030:intron 35.0%
GTGAAAGGCTAATTAGGATA+AGG + chr5_4:16937047-16937066 Msa0841030:intron 35.0%
! AACAAAAGCACACGTTAGTT+AGG + chr5_4:16937217-16937236 Msa0841030:intron 35.0%
GGCCAAAGTCCAATTAAAAT+TGG + chr5_4:16937250-16937269 Msa0841030:intron 35.0%
AAAAGTTAAGGGACTGAACT+GGG - chr5_4:16938743-16938762 None:intergenic 35.0%
TAAAAGTTAAGGGACTGAAC+TGG - chr5_4:16938742-16938761 None:intergenic 35.0%
!!! TCCAACGGTCTTCTTTTTTA+GGG - chr5_4:16938651-16938670 None:intergenic 35.0%
!!! ATCCAACGGTCTTCTTTTTT+AGG - chr5_4:16938650-16938669 None:intergenic 35.0%
!!! ATCCAACGGTCTTCTTTTTT+AGG + chr5_4:16938650-16938669 Msa0841030:intron 35.0%
!!! TCCAACGGTCTTCTTTTTTA+GGG + chr5_4:16938651-16938670 Msa0841030:intron 35.0%
TAAAAGTTAAGGGACTGAAC+TGG + chr5_4:16938742-16938761 Msa0841030:intron 35.0%
AAAAGTTAAGGGACTGAACT+GGG + chr5_4:16938743-16938762 Msa0841030:intron 35.0%
GTGTTAAGAAGTGAGGAAAT+GGG + chr5_4:16939160-16939179 Msa0841030:CDS 35.0%
ATCGTAGCATACAATGACAT+TGG - chr5_4:16939205-16939224 None:intergenic 35.0%
TGTCATTGTATGCTACGATA+TGG + chr5_4:16939206-16939225 Msa0841030:CDS 35.0%
GTCATTGTATGCTACGATAT+GGG + chr5_4:16939207-16939226 Msa0841030:CDS 35.0%
GATATGGGATGCATCAAATT+GGG + chr5_4:16939222-16939241 Msa0841030:CDS 35.0%
AAGAGTAGTACATGAAACGT+TGG - chr5_4:16939453-16939472 None:intergenic 35.0%
ATAATATTACACTCTGGTGG+TGG - chr5_4:16939505-16939524 None:intergenic 35.0%
GGAATAATATTACACTCTGG+TGG - chr5_4:16939508-16939527 None:intergenic 35.0%
GCTGGAATAATATTACACTC+TGG - chr5_4:16939511-16939530 None:intergenic 35.0%
! TTAAATCTTTGTTTCTCCGC+TGG - chr5_4:16939529-16939548 None:intergenic 35.0%
AGCGGAGAAACAAAGATTTA+AGG + chr5_4:16939528-16939547 Msa0841030:CDS 35.0%
TCATCACATATCACCTTGAT+CGG - chr5_4:16939635-16939654 None:intergenic 35.0%
!! TTAGTGTGTGTTGTTTCAGT+AGG + chr5_4:16939807-16939826 Msa0841030:three_prime_UTR 35.0%
AAGACCAACCATAAATGATC+AGG - chr5_4:16939911-16939930 None:intergenic 35.0%
!! GGGGATATTGGTCTTTGATT+GGG - chr5_4:16934613-16934632 None:intergenic 40.0%
!! AGGGGATATTGGTCTTTGAT+TGG - chr5_4:16934614-16934633 None:intergenic 40.0%
CATCATACCTTACGTTGTTG+TGG + chr5_4:16934748-16934767 Msa0841030:CDS 40.0%
TATGTTCCCACAACAACGTA+AGG - chr5_4:16934758-16934777 None:intergenic 40.0%
TATTCTCATCTCTTCGGAGA+TGG + chr5_4:16934877-16934896 Msa0841030:CDS 40.0%
CTCAAAATCCAACTCATCGT+GGG - chr5_4:16935646-16935665 None:intergenic 40.0%
ACTCAAAATCCAACTCATCG+TGG - chr5_4:16935647-16935666 None:intergenic 40.0%
!!! GAGTTGGATTTTGAGTTCCT+AGG + chr5_4:16935651-16935670 Msa0841030:intron 40.0%
! GTTTTCCAGCTATGTTACCT+AGG - chr5_4:16935671-16935690 None:intergenic 40.0%
GTAACATAGCTGGAAAACCA+TGG + chr5_4:16935673-16935692 Msa0841030:intron 40.0%
! AAGTTTGTTTGAAACCGCCA+TGG - chr5_4:16935693-16935712 None:intergenic 40.0%
GACCCAATACTAAACTTGTG+TGG + chr5_4:16935901-16935920 Msa0841030:intron 40.0%
GGACCACACAAGTTTAGTAT+TGG - chr5_4:16935907-16935926 None:intergenic 40.0%
CGTGGTATGTTATGAGATTG+AGG + chr5_4:16936550-16936569 Msa0841030:intron 40.0%
GGTATGTTATGAGATTGAGG+TGG + chr5_4:16936553-16936572 Msa0841030:intron 40.0%
! TGTTTGACTTAATGTGAGGG+GGG + chr5_4:16936580-16936599 Msa0841030:intron 40.0%
!! GAAAAGTGTTTCTTGCGTGT+GGG + chr5_4:16936602-16936621 Msa0841030:intron 40.0%
TGAGTATGTGTGAGCTAACA+AGG + chr5_4:16936651-16936670 Msa0841030:intron 40.0%
TATGTGTGAGCTAACAAGGA+TGG + chr5_4:16936655-16936674 Msa0841030:intron 40.0%
! AGATGGTAGTGATGATACTC+TGG + chr5_4:16936716-16936735 Msa0841030:intron 40.0%
!! TTCTAGAGTTTGGCATGAGA+AGG - chr5_4:16937005-16937024 None:intergenic 40.0%
!! CCTAATTAGCCTTTCACATC+AGG - chr5_4:16937044-16937063 None:intergenic 40.0%
CCTGATGTGAAAGGCTAATT+AGG + chr5_4:16937041-16937060 Msa0841030:intron 40.0%
CGTTAGTTAGGAGCTTATGT+TGG + chr5_4:16937229-16937248 Msa0841030:intron 40.0%
TCCCTAAAAAAGAAGACCGT+TGG + chr5_4:16937440-16937459 Msa0841030:intron 40.0%
AAAAGAAGACCGTTGGATCA+AGG + chr5_4:16937447-16937466 Msa0841030:intron 40.0%
!! TTCAGATACTTAGGTGTTGG+TGG - chr5_4:16938598-16938617 None:intergenic 40.0%
!! TTCAGATACTTAGGTGTTGG+TGG + chr5_4:16938598-16938617 Msa0841030:intron 40.0%
TGGTACACAGTAAGATCTGA+TGG + chr5_4:16938618-16938637 Msa0841030:intron 40.0%
AAAAGAAGACCGTTGGATCA+AGG - chr5_4:16937447-16937466 None:intergenic 40.0%
TCCCTAAAAAAGAAGACCGT+TGG - chr5_4:16937440-16937459 None:intergenic 40.0%
GGAATCTATGAGTTTGCGTT+TGG - chr5_4:16938905-16938924 None:intergenic 40.0%
TGATGAAGTTCCAATTAGGG+AGG + chr5_4:16939138-16939157 Msa0841030:CDS 40.0%
CTTCTTAACACCTCCCTAAT+TGG - chr5_4:16939151-16939170 None:intergenic 40.0%
GGTGTTAAGAAGTGAGGAAA+TGG + chr5_4:16939159-16939178 Msa0841030:CDS 40.0%
TTAAGAAGTGAGGAAATGGG+AGG + chr5_4:16939163-16939182 Msa0841030:CDS 40.0%
!! ACAATGACATTGGCTTGACT+GGG - chr5_4:16939195-16939214 None:intergenic 40.0%
!! TACAATGACATTGGCTTGAC+TGG - chr5_4:16939196-16939215 None:intergenic 40.0%
CGATATGGGATGCATCAAAT+TGG + chr5_4:16939221-16939240 Msa0841030:CDS 40.0%
TGCATCAAATTGGGCAACAT+CGG + chr5_4:16939231-16939250 Msa0841030:CDS 40.0%
ATTTAAGGACCTAGTCCTCA+AGG + chr5_4:16939300-16939319 Msa0841030:CDS 40.0%
TTTAAGGACCTAGTCCTCAA+GGG + chr5_4:16939301-16939320 Msa0841030:CDS 40.0%
!! TTCAAGATGGACGTTTTGGT+CGG - chr5_4:16939374-16939393 None:intergenic 40.0%
! CATAGTCTTGAGCTTCAAGA+TGG - chr5_4:16939387-16939406 None:intergenic 40.0%
AGTAGTACATGAAACGTTGG+CGG - chr5_4:16939450-16939469 None:intergenic 40.0%
AAAGATTTAAGGAGACCGGA+AGG + chr5_4:16939539-16939558 Msa0841030:CDS 40.0%
TCCACCAAATTTCAACCTTC+CGG - chr5_4:16939557-16939576 None:intergenic 40.0%
GGTTCCTGATCATTTATGGT+TGG + chr5_4:16939904-16939923 Msa0841030:three_prime_UTR 40.0%
! CATTGAAGGGTATGGTTGCA+AGG - chr5_4:16934852-16934871 None:intergenic 45.0%
GCAACCATACCCTTCAATGA+TGG + chr5_4:16934853-16934872 Msa0841030:CDS 45.0%
AATTACCGGTGTAACGATCG+AGG - chr5_4:16934945-16934964 None:intergenic 45.0%
TGAGAAAACCCACGATGAGT+TGG + chr5_4:16935635-16935654 Msa0841030:intron 45.0%
GAGTTCCTAGGTAACATAGC+TGG + chr5_4:16935663-16935682 Msa0841030:intron 45.0%
ACATAGCTGGAAAACCATGG+CGG + chr5_4:16935676-16935695 Msa0841030:intron 45.0%
!! GGAAATGGAAGTACTCATCG+TGG + chr5_4:16935717-16935736 Msa0841030:intron 45.0%
GTGAGGAACGTTATCGTCTT+TGG + chr5_4:16935742-16935761 Msa0841030:intron 45.0%
! CTTTGGTTCGACCCAACAAA+AGG + chr5_4:16935759-16935778 Msa0841030:intron 45.0%
TTACCGTGACAACAAGTGGA+AGG - chr5_4:16936310-16936329 None:intergenic 45.0%
TCCGGGTATGTGTGTATTTG+TGG + chr5_4:16936507-16936526 Msa0841030:intron 45.0%
GCCACAAATACACACATACC+CGG - chr5_4:16936511-16936530 None:intergenic 45.0%
!! GGAAAAGTGTTTCTTGCGTG+TGG + chr5_4:16936601-16936620 Msa0841030:intron 45.0%
ATTAATCTGGCCCACACTCA+TGG + chr5_4:16936778-16936797 Msa0841030:intron 45.0%
!! TTCAAGTTGGCCATGAGTGT+GGG - chr5_4:16936791-16936810 None:intergenic 45.0%
!! ATTCAAGTTGGCCATGAGTG+TGG - chr5_4:16936792-16936811 None:intergenic 45.0%
! GATGGACTTCCTTGATCCAA+CGG - chr5_4:16938636-16938655 None:intergenic 45.0%
TGGTACACGGTAAGATCTGA+TGG - chr5_4:16937477-16937496 None:intergenic 45.0%
!! ACTTAGGTGTTGGTGGTACA+CGG - chr5_4:16938605-16938624 None:intergenic 45.0%
! GATGGACTTCCTTGATCCAA+CGG + chr5_4:16938636-16938655 Msa0841030:intron 45.0%
!! GACTTGGTTTGGCAAATGGT+AGG - chr5_4:16938926-16938945 None:intergenic 45.0%
!! ATGGGACTTGGTTTGGCAAA+TGG - chr5_4:16938930-16938949 None:intergenic 45.0%
! GGAACTAATGGGACTTGGTT+TGG - chr5_4:16938937-16938956 None:intergenic 45.0%
TAGGTGGAACTAATGGGACT+TGG - chr5_4:16938942-16938961 None:intergenic 45.0%
!! TAGGGAGGTGTTAAGAAGTG+AGG + chr5_4:16939153-16939172 Msa0841030:CDS 45.0%
GCATCAAATTGGGCAACATC+GGG + chr5_4:16939232-16939251 Msa0841030:CDS 45.0%
GGGTCGGATACTTCTTGAAT+TGG - chr5_4:16939340-16939359 None:intergenic 45.0%
! GAGCTTCAAGATGGACGTTT+TGG - chr5_4:16939378-16939397 None:intergenic 45.0%
!! TACACTCTGGTGGTGGTATA+GGG - chr5_4:16939498-16939517 None:intergenic 45.0%
!! TTACACTCTGGTGGTGGTAT+AGG - chr5_4:16939499-16939518 None:intergenic 45.0%
GAGACCGGAAGGTTGAAATT+TGG + chr5_4:16939550-16939569 Msa0841030:CDS 45.0%
ACCGGAAGGTTGAAATTTGG+TGG + chr5_4:16939553-16939572 Msa0841030:CDS 45.0%
GGACGGTTCCTGATCATTTA+TGG + chr5_4:16939900-16939919 Msa0841030:three_prime_UTR 45.0%
!!! ATTTTTTTTTTAGAAAAAAA+AGG + chr5_4:16935499-16935518 Msa0841030:intron 5.0%
!!! TATTTCTAAATTAATATAAA+TGG - chr5_4:16938549-16938568 None:intergenic 5.0%
!! TTAATTTAGAAATAAAAATT+TGG + chr5_4:16937552-16937571 Msa0841030:intron 5.0%
!!! TTTTTTTTACAAAAAAAAAT+TGG + chr5_4:16937666-16937685 Msa0841030:intron 5.0%
!!! AAAATATTTTATTTTAAATC+TGG + chr5_4:16937706-16937725 Msa0841030:intron 5.0%
!! AAAAAATTTAAAAAAAATTC+AGG - chr5_4:16938481-16938500 None:intergenic 5.0%
!!! TATTTCTAAATTAATATAAA+TGG + chr5_4:16938549-16938568 Msa0841030:intron 5.0%
!!! AATATTTTGTTAAATAAATT+TGG + chr5_4:16939047-16939066 Msa0841030:intron 5.0%
!!! ATATTTTGTTAAATAAATTT+GGG + chr5_4:16939048-16939067 Msa0841030:intron 5.0%
!!! TTTTTATGATTTTTTTTTTT+TGG + chr5_4:16939683-16939702 Msa0841030:three_prime_UTR 5.0%
!!! TTTTATGATTTTTTTTTTTT+GGG + chr5_4:16939684-16939703 Msa0841030:three_prime_UTR 5.0%
!!! TTTTACATATAAAAATAAAA+AGG - chr5_4:16939941-16939960 None:intergenic 5.0%
AACGTTGTTCGTTCCTCCGA+TGG + chr5_4:16934901-16934920 Msa0841030:CDS 50.0%
TGTAACGATCGAGGAGGAGT+TGG - chr5_4:16934936-16934955 None:intergenic 50.0%
AAGTACTCATCGTGGACGTG+AGG + chr5_4:16935725-16935744 Msa0841030:intron 50.0%
!! TCGCCTTCCACTTGTTGTCA+CGG + chr5_4:16936304-16936323 Msa0841030:intron 50.0%
TCAAATTGGGCAACATCGGG+TGG + chr5_4:16939235-16939254 Msa0841030:CDS 50.0%
GATCAACTGAGCAACCCTTG+AGG - chr5_4:16939318-16939337 None:intergenic 50.0%
! TTTTGGTCGGAGCAAACGTC+GGG - chr5_4:16939361-16939380 None:intergenic 50.0%
!! GTTTTGGTCGGAGCAAACGT+CGG - chr5_4:16939362-16939381 None:intergenic 50.0%
!! CCTTGATCGGTGTCATCTAC+CGG - chr5_4:16939622-16939641 None:intergenic 50.0%
GTTCGTTCCTCCGATGGCAA+CGG + chr5_4:16934907-16934926 Msa0841030:CDS 55.0%
GAGTTGGACACCGTTGCCAT+CGG - chr5_4:16934920-16934939 None:intergenic 55.0%
CTCCTCCTCGATCGTTACAC+CGG + chr5_4:16934937-16934956 Msa0841030:CDS 55.0%
TACCGGTGTAACGATCGAGG+AGG - chr5_4:16934942-16934961 None:intergenic 55.0%
CTGAGCAACCCTTGAGGACT+AGG - chr5_4:16939312-16939331 None:intergenic 55.0%
TTTGGTCGGAGCAAACGTCG+GGG - chr5_4:16939360-16939379 None:intergenic 55.0%
GGGTGGTCGTACTTCAACTC+CGG + chr5_4:16939600-16939619 Msa0841030:CDS 55.0%
CCGGTAGATGACACCGATCA+AGG + chr5_4:16939619-16939638 Msa0841030:CDS 55.0%
TTGGACACCGTTGCCATCGG+AGG - chr5_4:16934917-16934936 None:intergenic 60.0%
GGAACCTTCGCATTGCGAGG+CGG - chr5_4:16939429-16939448 None:intergenic 60.0%
GAAGCCACCGCCGACATTCT+AGG + chr5_4:16939575-16939594 Msa0841030:CDS 60.0%
GACCACCCCGCCTAGAATGT+CGG - chr5_4:16939588-16939607 None:intergenic 60.0%
GTCGGAGCAAACGTCGGGGT+CGG - chr5_4:16939356-16939375 None:intergenic 65.0%
GGCGGAACCTTCGCATTGCG+AGG - chr5_4:16939432-16939451 None:intergenic 65.0%
GCCACCGCCGACATTCTAGG+CGG + chr5_4:16939578-16939597 Msa0841030:CDS 65.0%
CCACCGCCGACATTCTAGGC+GGG + chr5_4:16939579-16939598 Msa0841030:CDS 65.0%
CACCGCCGACATTCTAGGCG+GGG + chr5_4:16939580-16939599 Msa0841030:CDS 65.0%
CACCCCGCCTAGAATGTCGG+CGG - chr5_4:16939585-16939604 None:intergenic 65.0%
GCGGCGCATGGGGGTCACAT+TGG - chr5_4:16939410-16939429 None:intergenic 70.0%
CATTGCGAGGCGGCGCATGG+GGG - chr5_4:16939419-16939438 None:intergenic 70.0%
GCATTGCGAGGCGGCGCATG+GGG - chr5_4:16939420-16939439 None:intergenic 70.0%
CGCATTGCGAGGCGGCGCAT+GGG - chr5_4:16939421-16939440 None:intergenic 70.0%
TCGCATTGCGAGGCGGCGCA+TGG - chr5_4:16939422-16939441 None:intergenic 70.0%
TGCGCCGCCTCGCAATGCGA+AGG + chr5_4:16939422-16939441 Msa0841030:CDS 70.0%
CCCGCCTAGAATGTCGGCGG+TGG - chr5_4:16939582-16939601 None:intergenic 70.0%
CGCCGACATTCTAGGCGGGG+TGG + chr5_4:16939583-16939602 Msa0841030:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 16934590 16939971 16934590 ID=Msa0841030;Name=Msa0841030
chr5_4 mRNA 16934590 16939971 16934590 ID=Msa0841030-mRNA-1;Parent=Msa0841030;Name=Msa0841030-mRNA-1;_AED=0.11;_eAED=0.11;_QI=152|0.5|0.66|1|0.5|0.66|3|320|277
chr5_4 exon 16934590 16934958 16934590 ID=Msa0841030-mRNA-1:exon:7289;Parent=Msa0841030-mRNA-1
chr5_4 exon 16935076 16935169 16935076 ID=Msa0841030-mRNA-1:exon:7290;Parent=Msa0841030-mRNA-1
chr5_4 exon 16939129 16939971 16939129 ID=Msa0841030-mRNA-1:exon:7291;Parent=Msa0841030-mRNA-1
chr5_4 five_prime_UTR 16934590 16934741 16934590 ID=Msa0841030-mRNA-1:five_prime_utr;Parent=Msa0841030-mRNA-1
chr5_4 CDS 16934742 16934958 16934742 ID=Msa0841030-mRNA-1:cds;Parent=Msa0841030-mRNA-1
chr5_4 CDS 16935076 16935169 16935076 ID=Msa0841030-mRNA-1:cds;Parent=Msa0841030-mRNA-1
chr5_4 CDS 16939129 16939651 16939129 ID=Msa0841030-mRNA-1:cds;Parent=Msa0841030-mRNA-1
chr5_4 three_prime_UTR 16939652 16939971 16939652 ID=Msa0841030-mRNA-1:three_prime_utr;Parent=Msa0841030-mRNA-1
Gene Sequence

>Msa0841030

ATGAATCATCATACCTTACGTTGTTGTGGGAACATACCCAAAACTCATTTCCTATTTTCATTTTTTTCTCTATTTCTTCTCTTCAGTTTCACAAACTCAGCTTTCGACCTTGCAACCATACCCTTCAATGATGGTTATTCTCATCTCTTCGGAGATGGCAACGTTGTTCGTTCCTCCGATGGCAACGGTGTCCAACTCCTCCTCGATCGTTACACCGGTTCTGGTTTTATTTCATCAAATATGTATCAACATGGATTCTTCAGCGCAAATATCAAGTTACCATCGAATTATACTGCTGGAATTTGTGTTGCATTTTACATTGATGAAGTTCCAATTAGGGAGGTGTTAAGAAGTGAGGAAATGGGAGGTGAATACCCAGTCAAGCCAATGTCATTGTATGCTACGATATGGGATGCATCAAATTGGGCAACATCGGGTGGAAAATACAAAGTAAATTATAAATATGCTCCTTTTGTTGTTGAATTTAAGGACCTAGTCCTCAAGGGTTGCTCAGTTGATCCAATTCAAGAAGTATCCGACCCCGACGTTTGCTCCGACCAAAACGTCCATCTTGAAGCTCAAGACTATGCCAATGTGACCCCCATGCGCCGCCTCGCAATGCGAAGGTTCCGCCAACGTTTCATGTACTACTCTTATTGCTATGATACAATTAGGTACCCTATACCACCACCAGAGTGTAATATTATTCCAGCGGAGAAACAAAGATTTAAGGAGACCGGAAGGTTGAAATTTGGTGGAAGCCACCGCCGACATTCTAGGCGGGGTGGTCGTACTTCAACTCCGGTAGATGACACCGATCAAGGTGATATGTGA
Protein sequence

>Msa0841030

MNHHTLRCCGNIPKTHFLFSFFSLFLLFSFTNSAFDLATIPFNDGYSHLFGDGNVVRSSDGNGVQLLLDRYTGSGFISSNMYQHGFFSANIKLPSNYTAGICVAFYIDEVPIREVLRSEEMGGEYPVKPMSLYATIWDASNWATSGGKYKVNYKYAPFVVEFKDLVLKGCSVDPIQEVSDPDVCSDQNVHLEAQDYANVTPMRRLAMRRFRQRFMYYSYCYDTIRYPIPPPECNIIPAEKQRFKETGRLKFGGSHRRHSRRGGRTSTPVDDTDQGDM*