AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1041250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041250 MtrunA17_Chr7g0269511 96.991 565 17 0 1 565 1 565 0.0 1135
Msa1041250 MtrunA17_Chr7g0269521 67.416 534 166 4 36 565 34 563 0.0 736
Msa1041250 MtrunA17_Chr1g0175661 64.865 555 178 5 14 565 19 559 0.0 735
Msa1041250 MtrunA17_Chr1g0195301 66.792 533 172 3 36 565 26 556 0.0 728
Msa1041250 MtrunA17_Chr1g0195321 66.792 533 172 3 36 565 26 556 0.0 728
Msa1041250 MtrunA17_Chr1g0195331 64.085 568 189 4 1 565 1 556 0.0 726
Msa1041250 MtrunA17_Chr1g0195351 63.732 568 189 5 1 565 1 554 0.0 719
Msa1041250 MtrunA17_Chr7g0269531 62.360 534 195 5 34 564 35 565 0.0 680
Msa1041250 MtrunA17_Chr1g0192331 52.751 527 217 6 37 560 27 524 0.0 538
Msa1041250 MtrunA17_Chr3g0080381 50.545 550 240 11 40 566 90 630 2.73e-180 522
Msa1041250 MtrunA17_Chr8g0354911 50.462 541 246 8 41 564 77 612 1.90e-178 517
Msa1041250 MtrunA17_Chr1g0195311 77.154 267 61 0 299 565 49 315 8.55e-155 446
Msa1041250 MtrunA17_Chr7g0269541 48.780 492 224 8 72 560 86 552 4.60e-148 437
Msa1041250 MtrunA17_Chr4g0011771 45.438 537 224 18 42 564 32 513 1.64e-133 399
Msa1041250 MtrunA17_Chr8g0391311 44.256 531 265 11 41 564 35 541 5.36e-133 398
Msa1041250 MtrunA17_Chr8g0391291 44.256 531 265 11 41 564 33 539 2.05e-132 397
Msa1041250 MtrunA17_Chr4g0011791 45.369 529 231 14 42 564 33 509 5.25e-132 394
Msa1041250 MtrunA17_Chr1g0147051 45.287 488 233 9 93 564 138 607 1.64e-130 394
Msa1041250 MtrunA17_Chr4g0069881 40.603 564 279 12 14 564 15 535 2.14e-129 389
Msa1041250 MtrunA17_Chr2g0302021 46.269 469 212 10 101 564 92 525 3.83e-129 388
Msa1041250 MtrunA17_Chr8g0345281 42.964 533 283 8 40 564 70 589 1.10e-126 384
Msa1041250 MtrunA17_Chr3g0126771 41.197 585 289 15 9 564 39 597 2.39e-125 380
Msa1041250 MtrunA17_Chr4g0069841 44.754 467 219 8 101 564 86 516 3.20e-124 375
Msa1041250 MtrunA17_Chr7g0272141 44.068 472 225 10 101 566 106 544 7.39e-124 375
Msa1041250 MtrunA17_Chr8g0354901 44.946 465 227 8 100 564 146 581 2.80e-123 375
Msa1041250 MtrunA17_Chr7g0233831 44.968 467 221 10 101 564 122 555 5.29e-123 373
Msa1041250 MtrunA17_Chr4g0069861 43.579 475 217 8 101 564 83 517 1.30e-122 371
Msa1041250 MtrunA17_Chr3g0080391 43.871 465 232 8 100 564 139 574 1.78e-122 372
Msa1041250 MtrunA17_Chr4g0011751 43.041 467 225 8 93 558 57 483 3.69e-121 366
Msa1041250 MtrunA17_Chr7g0233771 44.754 467 222 10 101 564 121 554 1.80e-120 367
Msa1041250 MtrunA17_Chr7g0233801 42.558 477 239 9 90 564 110 553 1.35e-115 354
Msa1041250 MtrunA17_Chr4g0018371 39.147 539 273 12 42 564 40 539 5.31e-114 349
Msa1041250 MtrunA17_Chr3g0090091 38.722 532 278 11 42 564 36 528 6.18e-112 343
Msa1041250 MtrunA17_Chr3g0079361 42.581 465 224 10 104 564 102 527 4.33e-111 341
Msa1041250 MtrunA17_Chr3g0079341 42.581 465 224 10 104 564 102 527 1.79e-110 340
Msa1041250 MtrunA17_Chr4g0069891 40.830 458 255 5 101 558 146 587 8.78e-110 340
Msa1041250 MtrunA17_Chr3g0079351 41.164 464 232 9 104 564 102 527 1.29e-109 338
Msa1041250 MtrunA17_Chr2g0302001 51.525 295 140 1 270 564 146 437 2.91e-107 328
Msa1041250 MtrunA17_Chr8g0345211 38.505 535 288 15 40 564 79 582 2.06e-102 321
Msa1041250 MtrunA17_Chr7g0270691 35.214 585 324 17 1 565 1 550 3.65e-100 314
Msa1041250 MtrunA17_Chr1g0194091 38.333 480 254 7 101 560 108 565 4.25e-99 311
Msa1041250 MtrunA17_Chr1g0192321 37.838 481 265 11 98 561 117 580 4.52e-97 307
Msa1041250 MtrunA17_Chr1g0194081 35.581 534 307 9 40 560 50 559 7.70e-97 306
Msa1041250 MtrunA17_Chr1g0192311 37.849 465 262 8 101 560 124 566 2.80e-94 300
Msa1041250 MtrunA17_Chr1g0192281 37.849 465 262 8 101 560 124 566 2.80e-94 300
Msa1041250 MtrunA17_Chr3g0129921 35.345 580 297 19 11 559 27 559 1.68e-93 297
Msa1041250 MtrunA17_Chr2g0301931 51.408 284 134 2 283 566 15 294 2.77e-93 287
Msa1041250 MtrunA17_Chr8g0384121 34.687 591 297 18 8 559 19 559 1.02e-92 295
Msa1041250 MtrunA17_Chr7g0272151 33.095 559 294 9 42 561 63 580 1.03e-92 296
Msa1041250 MtrunA17_Chr4g0000121 36.933 463 269 7 101 560 111 553 1.45e-90 290
Msa1041250 MtrunA17_Chr1g0192301 37.149 463 268 7 101 560 129 571 2.84e-90 289
Msa1041250 MtrunA17_Chr4g0067611 35.669 471 271 8 100 560 120 568 3.37e-87 281
Msa1041250 MtrunA17_Chr7g0234711 55.844 231 100 2 336 564 39 269 7.96e-87 270
Msa1041250 MtrunA17_Chr4g0067601 35.095 473 273 7 100 561 120 569 6.11e-86 278
Msa1041250 MtrunA17_Chr7g0270651 34.719 481 281 6 98 564 105 566 4.27e-84 273
Msa1041250 MtrunA17_Chr2g0295531 33.568 569 323 15 5 561 18 543 9.39e-84 273
Msa1041250 MtrunA17_Chr7g0270661 35.510 490 265 8 101 564 108 572 1.04e-82 269
Msa1041250 MtrunA17_Chr7g0270671 35.510 490 265 8 101 564 108 572 1.04e-82 269
Msa1041250 MtrunA17_Chr2g0295551 32.451 567 338 12 11 561 24 561 8.33e-81 264
Msa1041250 MtrunA17_Chr8g0380581 40.419 334 187 5 230 561 50 373 1.87e-78 252
Msa1041250 MtrunA17_Chr7g0270631 34.286 490 273 9 98 565 93 555 2.80e-78 267
Msa1041250 MtrunA17_Chr7g0270631 32.041 490 294 8 98 564 641 1114 9.01e-68 238
Msa1041250 MtrunA17_Chr5g0437831 41.424 309 175 4 254 560 75 379 2.72e-75 244
Msa1041250 MtrunA17_Chr7g0271381 30.838 561 334 15 12 560 34 552 1.30e-71 239
Msa1041250 MtrunA17_Chr7g0268241 40.635 315 171 6 252 564 50 350 3.94e-71 232
Msa1041250 MtrunA17_Chr2g0334111 40.317 315 170 7 252 564 25 323 5.75e-71 230
Msa1041250 MtrunA17_Chr2g0295541 30.948 559 321 11 42 561 60 592 1.68e-67 229
Msa1041250 MtrunA17_Chr6g0487101 38.689 305 159 7 260 553 93 380 3.42e-56 193
Msa1041250 MtrunA17_Chr8g0389771 37.785 307 161 7 260 553 88 377 1.06e-54 189
Msa1041250 MtrunA17_Chr6g0453551 34.277 318 180 7 251 555 5 306 1.90e-52 181
Msa1041250 MtrunA17_Chr1g0194311 34.615 312 177 8 252 553 74 368 1.84e-49 175
Msa1041250 MtrunA17_Chr8g0391261 54.745 137 61 1 429 564 30 166 5.09e-48 164
Msa1041250 MtrunA17_Chr6g0466961 36.395 294 157 9 241 527 29 299 2.78e-47 168
Msa1041250 MtrunA17_Chr7g0217941 35.640 289 158 8 251 527 5 277 3.30e-47 167
Msa1041250 MtrunA17_Chr7g0258341 33.333 312 184 7 252 553 90 387 1.93e-46 167
Msa1041250 MtrunA17_Chr4g0070051 31.098 328 193 10 236 553 39 343 2.84e-44 160
Msa1041250 MtrunA17_Chr6g0466951 32.423 293 170 8 241 527 58 328 2.09e-42 155
Msa1041250 MtrunA17_Chr5g0446301 33.117 308 177 7 258 553 67 357 6.54e-41 151
Msa1041250 MtrunA17_Chr1g0161731 34.035 285 162 7 252 527 48 315 1.36e-38 145
Msa1041250 MtrunA17_Chr7g0265201 31.169 308 183 7 253 553 100 385 4.21e-38 144
Msa1041250 MtrunA17_Chr5g0399221 28.931 318 197 7 251 556 62 362 4.91e-38 144
Msa1041250 MtrunA17_Chr2g0294321 27.576 330 210 7 234 554 38 347 1.10e-36 139
Msa1041250 MtrunA17_Chr4g0037751 31.068 309 190 8 251 553 70 361 3.08e-35 136
Msa1041250 MtrunA17_Chr5g0440871 31.922 307 185 7 248 553 35 318 1.11e-34 133
Msa1041250 MtrunA17_Chr2g0295851 26.911 327 207 9 234 554 37 337 2.01e-33 130
Msa1041250 MtrunA17_Chr5g0420831 32.979 282 168 8 251 526 70 336 4.72e-33 130
Msa1041250 MtrunA17_Chr2g0299431 38.767 227 119 6 234 454 40 252 1.38e-32 126
Msa1041250 MtrunA17_Chr8g0351871 29.618 314 187 9 251 553 32 322 1.67e-30 122
Msa1041250 MtrunA17_Chr6g0459781 37.430 179 91 5 251 416 12 182 1.65e-28 112
Msa1041250 MtrunA17_Chr5g0437821 37.879 132 81 1 368 498 4 135 2.25e-26 104
Msa1041250 MtrunA17_Chr4g0025841 29.644 253 158 4 247 499 32 264 3.81e-24 102
Msa1041250 MtrunA17_Chr2g0314691 31.100 209 130 5 346 553 6 201 2.83e-23 98.2
Msa1041250 MtrunA17_Chr7g0265161 33.149 181 88 4 320 495 5 157 1.51e-22 97.1
Msa1041250 MtrunA17_Chr5g0440901 35.294 153 89 3 347 499 1 143 1.70e-22 94.0
Msa1041250 MtrunA17_Chr8g0391281 31.457 302 177 10 41 336 33 310 8.07e-21 93.6
Msa1041250 MtrunA17_Chr5g0440891 33.929 168 99 4 248 414 44 200 1.05e-17 82.0
Msa1041250 MtrunA17_Chr6g0459791 38.710 124 64 3 431 553 4 116 7.05e-17 77.0
Msa1041250 MtrunA17_Chr6g0460141 34.286 140 84 3 283 414 5 144 1.04e-14 71.6
Msa1041250 MtrunA17_Chr7g0234731 27.155 232 130 8 104 334 121 314 1.34e-12 68.9
Msa1041250 MtrunA17_Chr4g0073911 28.902 173 110 5 282 446 35 202 1.42e-12 67.8
Msa1041250 MtrunA17_Chr5g0440881 28.169 142 91 2 412 553 9 139 1.84e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041250 AT4G02330.1 62.369 574 196 9 8 565 3 572 0.0 717
Msa1041250 AT1G02810.1 63.139 548 179 6 42 566 32 579 0.0 701
Msa1041250 AT2G47550.1 62.734 534 186 7 37 565 34 559 0.0 656
Msa1041250 AT5G04970.1 48.713 544 253 8 41 566 87 622 4.73e-180 522
Msa1041250 AT3G10720.2 48.893 542 255 7 41 566 82 617 4.15e-178 517
Msa1041250 AT2G26440.1 42.364 550 286 10 22 564 22 547 1.54e-131 395
Msa1041250 AT2G45220.1 43.253 541 230 13 40 564 32 511 9.85e-129 387
Msa1041250 AT1G11580.1 40.246 569 300 10 5 564 20 557 5.12e-128 386
Msa1041250 AT1G11580.2 40.246 569 300 10 5 564 41 578 1.82e-127 385
Msa1041250 AT1G23200.1 41.852 540 276 11 41 564 37 554 1.17e-125 380
Msa1041250 AT3G43270.1 45.106 470 232 9 101 566 80 527 6.59e-125 377
Msa1041250 AT3G10720.1 63.077 260 96 0 306 565 1 260 8.29e-124 365
Msa1041250 AT3G49220.1 44.563 469 236 7 98 564 150 596 1.18e-123 377
Msa1041250 AT3G49220.3 44.563 469 236 7 98 564 195 641 2.88e-123 377
Msa1041250 AT3G60730.1 43.220 472 234 9 101 561 68 516 4.69e-122 370
Msa1041250 AT4G33220.1 45.474 475 229 10 101 564 68 523 4.61e-121 367
Msa1041250 AT1G53830.1 41.899 537 287 8 40 564 64 587 3.22e-120 367
Msa1041250 AT5G51490.1 40.596 537 267 13 42 564 38 536 1.33e-119 364
Msa1041250 AT3G05620.1 41.365 498 233 9 88 566 86 543 1.86e-119 364
Msa1041250 AT5G53370.1 44.492 472 233 10 99 564 137 585 2.28e-119 365
Msa1041250 AT5G53370.2 44.492 472 233 10 99 564 173 621 6.39e-119 365
Msa1041250 AT1G53840.1 40.399 552 284 14 24 558 58 581 8.66e-119 363
Msa1041250 AT3G14310.1 40.693 548 286 9 40 564 61 592 1.31e-117 361
Msa1041250 AT4G33220.2 53.313 332 145 3 234 564 80 402 4.47e-117 353
Msa1041250 AT4G02300.1 42.796 465 234 8 101 561 93 529 3.31e-116 355
Msa1041250 AT4G02320.1 42.742 496 243 12 77 564 56 518 5.49e-116 354
Msa1041250 AT3G05610.1 40.512 469 251 6 101 565 122 566 9.64e-116 358
Msa1041250 AT2G43050.1 41.153 503 242 10 69 566 65 518 2.08e-115 352
Msa1041250 AT5G04960.1 43.897 426 215 8 136 560 158 560 2.09e-114 352
Msa1041250 AT5G51500.1 39.560 546 260 13 42 564 42 540 1.38e-113 348
Msa1041250 AT4G00190.1 40.341 528 249 13 42 564 8 474 2.52e-112 343
Msa1041250 AT3G59010.1 45.497 433 200 10 136 565 130 529 3.97e-112 344
Msa1041250 AT2G26450.1 40.725 469 228 10 101 557 174 604 9.74e-112 346
Msa1041250 AT5G27870.1 40.086 464 254 6 98 560 118 558 3.25e-110 346
Msa1041250 AT3G10710.1 38.951 534 281 13 36 564 68 561 5.07e-109 337
Msa1041250 AT4G33230.1 39.829 467 244 10 101 557 160 599 1.11e-106 333
Msa1041250 AT3G14300.1 41.631 466 231 10 101 555 525 960 8.25e-101 327
Msa1041250 AT5G20860.2 36.802 519 266 13 64 564 64 538 1.95e-100 315
Msa1041250 AT4G03930.1 35.507 552 296 11 33 564 13 524 6.80e-99 310
Msa1041250 AT3G47400.1 39.832 477 238 10 101 564 154 594 4.90e-98 310
Msa1041250 AT3G06830.1 41.395 430 234 8 136 561 150 565 1.32e-97 308
Msa1041250 AT1G11590.1 35.145 552 298 12 33 564 13 524 6.65e-97 305
Msa1041250 AT5G49180.1 38.972 467 257 8 101 560 121 566 1.47e-96 305
Msa1041250 AT3G27980.1 48.089 314 157 3 252 564 189 497 4.65e-95 299
Msa1041250 AT4G15980.1 45.161 310 166 2 252 560 392 698 2.57e-83 274
Msa1041250 AT4G15980.2 45.161 310 166 2 252 560 402 708 4.91e-83 274
Msa1041250 AT5G09760.1 45.223 314 159 7 248 552 237 546 3.23e-82 267
Msa1041250 AT5G09760.2 45.223 314 159 7 248 552 263 572 3.29e-82 268
Msa1041250 AT5G64640.1 34.489 548 287 17 41 557 96 602 1.96e-81 267
Msa1041250 AT1G11370.1 50.000 244 119 1 252 495 46 286 9.33e-81 255
Msa1041250 AT5G20860.1 33.597 506 246 12 64 551 64 497 3.13e-80 261
Msa1041250 AT2G47030.1 30.151 597 363 12 8 564 6 588 3.42e-72 242
Msa1041250 AT2G47040.1 30.782 601 361 16 8 564 6 595 1.39e-71 241
Msa1041250 AT3G62170.1 40.909 308 175 4 254 558 279 582 1.51e-66 227
Msa1041250 AT5G19730.1 36.721 305 165 6 260 553 94 381 1.12e-52 184
Msa1041250 AT2G36700.1 33.766 308 184 5 251 553 41 333 7.04e-50 175
Msa1041250 AT2G21610.1 33.227 313 189 6 251 563 50 342 1.35e-49 175
Msa1041250 AT2G21610.2 33.227 313 189 6 251 563 55 347 1.95e-49 175
Msa1041250 AT1G05310.1 33.333 342 193 7 230 553 64 388 2.66e-49 176
Msa1041250 AT2G36710.1 34.286 315 186 5 251 558 90 390 3.45e-49 176
Msa1041250 AT3G29090.1 36.332 289 156 8 251 527 6 278 6.96e-48 169
Msa1041250 AT5G07430.1 32.515 326 199 6 232 553 47 355 1.95e-46 167
Msa1041250 AT3G17060.1 30.312 320 194 7 244 554 38 337 1.33e-43 159
Msa1041250 AT5G18990.1 34.483 290 157 7 252 527 29 299 6.77e-41 151
Msa1041250 AT3G24130.1 33.220 295 164 7 247 527 29 304 1.19e-39 147
Msa1041250 AT2G19150.1 31.529 314 195 7 252 560 41 339 1.22e-39 148
Msa1041250 AT5G47500.1 30.189 318 187 8 251 553 60 357 1.48e-39 148
Msa1041250 AT5G55590.1 30.818 318 191 7 248 553 78 378 2.56e-37 142
Msa1041250 AT5G07420.1 29.773 309 196 6 249 553 64 355 5.76e-37 141
Msa1041250 AT1G44980.1 45.509 167 88 1 252 418 78 241 1.76e-36 136
Msa1041250 AT5G61680.1 30.421 309 191 8 251 553 68 358 6.89e-36 138
Msa1041250 AT1G69940.1 28.354 328 211 9 231 553 47 355 7.46e-36 138
Msa1041250 AT5G07410.1 28.354 328 211 9 231 553 47 355 3.29e-35 136
Msa1041250 AT2G47280.1 30.063 316 188 8 252 555 35 329 1.31e-34 134
Msa1041250 AT5G55590.2 31.939 263 152 6 248 498 78 325 1.99e-34 133
Msa1041250 AT2G19150.2 32.941 255 153 6 252 501 41 282 1.97e-33 129
Msa1041250 AT5G26810.1 31.928 332 187 11 240 553 23 333 3.08e-33 130
Msa1041250 AT3G49220.2 31.381 239 141 6 98 335 195 411 2.72e-20 94.0

Find 121 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTTACATGCAAACATTTA+TGG 0.129976 7_1:-78842173 Msa1041250:CDS
TGGTGCTGTTTCAACATATT+TGG 0.148909 7_1:-78842224 Msa1041250:CDS
TCGCTAGAAACAGATTTATT+TGG 0.177140 7_1:+78843512 None:intergenic
TACAGAGAATGTGACATTTA+TGG 0.181984 7_1:-78842433 Msa1041250:CDS
GTGGATAGAGGTTACAATTT+TGG 0.190584 7_1:+78842371 None:intergenic
AGACATTAATTAATTAATTA+AGG 0.202828 7_1:+78841922 None:intergenic
AAAGCTAACGTTTATGATTA+TGG 0.233483 7_1:-78844154 Msa1041250:CDS
TATGCTGAGTTTAATAATAC+TGG 0.243616 7_1:-78842085 Msa1041250:CDS
GTTGGAGATATTTGTTGATT+AGG 0.292074 7_1:+78844083 None:intergenic
AAATCCTTTGTTAGAGTGTT+TGG 0.294966 7_1:+78843718 None:intergenic
GGAACAGTAGATTTCATATT+CGG 0.296112 7_1:-78842412 Msa1041250:CDS
ACATAGCTTGGAAGCCATAT+TGG 0.314129 7_1:+78844333 None:intergenic
CCTGGTGAGATAGGTGTAAT+TGG 0.334751 7_1:+78844235 None:intergenic
TGCTTTCTTTACTAAAGGTT+GGG 0.335009 7_1:-78843777 Msa1041250:CDS
GACAAACCAACAAACATGTT+TGG 0.337556 7_1:-78843891 Msa1041250:CDS
GAGATAGGTGTAATTGGATT+TGG 0.345211 7_1:+78844241 None:intergenic
TTGCTTTCTTTACTAAAGGT+TGG 0.347374 7_1:-78843778 Msa1041250:CDS
ATGTATAATTACCGAATGTT+GGG 0.354549 7_1:+78843333 None:intergenic
TCTCTTGCTTTCTTTACTAA+AGG 0.356675 7_1:-78843782 Msa1041250:CDS
GGTGCTGTTTCAACATATTT+GGG 0.357572 7_1:-78842223 Msa1041250:CDS
CATGCTGCTCCTGGTGAGAT+AGG 0.380293 7_1:+78844226 None:intergenic
AAGCAGTGGCACTTAGAAAC+GGG 0.398121 7_1:-78842534 Msa1041250:CDS
ATGTTGCTGGGTGGCGTGCT+TGG 0.401190 7_1:-78842138 Msa1041250:CDS
AAGAGAGACACTATAGAGTT+TGG 0.403782 7_1:+78843799 None:intergenic
GACCATCCAAACATGTTTGT+TGG 0.404138 7_1:+78843885 None:intergenic
AACTACTTTGTAAAATAAGT+TGG 0.405498 7_1:-78841808 Msa1041250:three_prime_UTR
ATTTCTTGCTTGGTGATGAT+TGG 0.405620 7_1:-78841976 Msa1041250:CDS
GATGTACCTGTGTCTTGGTT+AGG 0.407899 7_1:+78842295 None:intergenic
GAATCGCGCTGAGCAATGTT+TGG 0.411363 7_1:+78843915 None:intergenic
GATGATTGGTTGCCTCAAAC+AGG 0.413849 7_1:-78841962 Msa1041250:CDS
TGGGAGAATGGATTTGCAAT+AGG 0.413977 7_1:+78844183 None:intergenic
AATGTATAATTACCGAATGT+TGG 0.421859 7_1:+78843332 None:intergenic
GTGGATTTGCATGCTGCTCC+TGG 0.426506 7_1:+78844217 None:intergenic
GATTTGCAATAGGTTGGGTC+AGG 0.427569 7_1:+78844193 None:intergenic
TTGCTTAATTCAACATTTGT+CGG 0.441396 7_1:+78841754 None:intergenic
ACGGTGGCAAATTTCTTGCT+TGG 0.445744 7_1:-78841986 Msa1041250:CDS
GCATTGAATTGTCCACTCAT+TGG 0.449744 7_1:+78842343 None:intergenic
TGTTGCTGGGTGGCGTGCTT+GGG 0.450946 7_1:-78842137 Msa1041250:CDS
AATAAATCTGTTTCTAGCGA+TGG 0.450968 7_1:-78843509 Msa1041250:CDS
TTGCTTTAATTGTACAGTTG+TGG 0.453845 7_1:+78842269 None:intergenic
CGTTTCTAAGTGCCACTGCT+TGG 0.461010 7_1:+78842536 None:intergenic
ATGAATGTTGCAGCTGTGGT+TGG 0.462240 7_1:-78842616 Msa1041250:intron
TAGTGCTCGCACAGCGGTGG+TGG 0.463374 7_1:+78844045 None:intergenic
TGAGAGGGTATTACATAGCT+TGG 0.463691 7_1:+78844321 None:intergenic
GTGTAAGACACCCCTGTTTG+AGG 0.465284 7_1:+78841950 None:intergenic
AGAATGGATTTGCAATAGGT+TGG 0.473235 7_1:+78844187 None:intergenic
GAATGGATTTGCAATAGGTT+GGG 0.475452 7_1:+78844188 None:intergenic
TACAAAGTAGTTATAGTGGA+AGG 0.476675 7_1:+78841819 None:intergenic
GATAATGTGATTAATGTTGC+TGG 0.479559 7_1:-78842151 Msa1041250:CDS
GCTGGGTGGCGTGCTTGGGA+TGG 0.482960 7_1:-78842133 Msa1041250:CDS
CAAGCAGTGGCACTTAGAAA+CGG 0.489043 7_1:-78842535 Msa1041250:CDS
CAGTTTGAAAAGAGTTTGAA+AGG 0.492675 7_1:+78843984 None:intergenic
TGTGGTTGGGCAAGGATTCG+TGG 0.498726 7_1:-78842602 Msa1041250:CDS
ATCACAGTGTTGTTGATGGC+TGG 0.499298 7_1:-78843370 Msa1041250:CDS
GTTGATGGCTGGACCACATT+CGG 0.499631 7_1:-78843359 Msa1041250:CDS
AGTTGAGGTCGCTGAGCGAT+TGG 0.500496 7_1:+78844014 None:intergenic
TCACAGCACCTGCTGTGTTA+CGG 0.501976 7_1:+78842563 None:intergenic
GGCAATCACAGTGTTGTTGA+TGG 0.508915 7_1:-78843374 Msa1041250:CDS
GGATTGATGTACCTGTGTCT+TGG 0.509046 7_1:+78842290 None:intergenic
TTTGCAATAGGTTGGGTCAG+GGG 0.511394 7_1:+78844195 None:intergenic
TTTCATATTCGGAAATGCTA+AGG 0.512250 7_1:-78842401 Msa1041250:CDS
TGAATGTTGCAGCTGTGGTT+GGG 0.516948 7_1:-78842615 Msa1041250:intron
AAGTTTCTTCCAAGTTTACA+AGG 0.517405 7_1:-78843947 Msa1041250:CDS
GAGTTTAATAATACTGGGCC+AGG 0.520794 7_1:-78842079 Msa1041250:CDS
ATTGTGACGGTTAGTCAAGA+TGG 0.521081 7_1:-78843578 Msa1041250:CDS
CACAGCGGTGGTGGAAAGAG+TGG 0.524616 7_1:+78844054 None:intergenic
AGTTTGGTGTCATTAGAAAG+TGG 0.527999 7_1:+78843815 None:intergenic
ATAAATCTGTTTCTAGCGAT+GGG 0.535312 7_1:-78843508 Msa1041250:CDS
AACCAACAAACATGTTTGGA+TGG 0.537810 7_1:-78843887 Msa1041250:CDS
ACATTCGGCTCCCCAACATT+CGG 0.540697 7_1:-78843344 Msa1041250:intron
CTACCATCAGTGCTAGAGCC+TGG 0.540713 7_1:+78842061 None:intergenic
TCATTGGAAGACGTGGATAG+AGG 0.541407 7_1:+78842359 None:intergenic
CGTAAAATTAGCTGCATCCG+TGG 0.542453 7_1:+78842006 None:intergenic
GTTCTAGAATACTCTTTCCA+TGG 0.544216 7_1:+78842196 None:intergenic
AATTGGATTTGGACTAGTAC+CGG 0.546025 7_1:+78844252 None:intergenic
TTAAAGACACATCTTCAGCT+TGG 0.547064 7_1:-78843862 Msa1041250:CDS
GCAATAGGTTGGGTCAGGGG+TGG 0.547288 7_1:+78844198 None:intergenic
AATTCCAAACACTCTAACAA+AGG 0.556033 7_1:-78843722 Msa1041250:CDS
ATTTGCAATAGGTTGGGTCA+GGG 0.557363 7_1:+78844194 None:intergenic
GTTGCAGCTGTGGTTGGGCA+AGG 0.558786 7_1:-78842610 Msa1041250:intron
TGGAAAGAGTGGAGCGACGT+TGG 0.560848 7_1:+78844065 None:intergenic
ACGGTTAGTCAAGATGGAAG+TGG 0.570515 7_1:-78843572 Msa1041250:CDS
CCAATTACACCTATCTCACC+AGG 0.573664 7_1:-78844235 Msa1041250:CDS
GTGGTTGGGCAAGGATTCGT+GGG 0.574159 7_1:-78842601 Msa1041250:CDS
CAACATATTTGGGAAGACCA+TGG 0.574540 7_1:-78842213 Msa1041250:CDS
ATGACCATCCGTAACACAGC+AGG 0.577711 7_1:-78842571 Msa1041250:CDS
GATGATTTAGCTTCTAGCAA+TGG 0.582638 7_1:-78842244 Msa1041250:CDS
ATGCTGAGTTTAATAATACT+GGG 0.583978 7_1:-78842084 Msa1041250:CDS
AAAGAATGAGAAATATTGAG+AGG 0.586083 7_1:+78844305 None:intergenic
ATTAACAAGACTATTATCAC+TGG 0.586139 7_1:-78843395 Msa1041250:CDS
GGGCCAGGCTCTAGCACTGA+TGG 0.587768 7_1:-78842064 Msa1041250:CDS
TTGTAGTGCTCGCACAGCGG+TGG 0.588898 7_1:+78844042 None:intergenic
CTATCATGTGATTAATGCCA+CGG 0.589574 7_1:-78842023 Msa1041250:CDS
TTTACAGTTGCAGTTTCGAA+GGG 0.589810 7_1:-78842495 Msa1041250:CDS
TCAAGTTGGTGAGGATGTTG+TGG 0.590169 7_1:-78843609 Msa1041250:CDS
TGCTGTGAAGCACCAAGCAG+TGG 0.592757 7_1:-78842548 Msa1041250:CDS
GATGGTAGAGTGACGTGGCA+AGG 0.596651 7_1:-78842046 Msa1041250:CDS
GAATGTTGGGGAGCCGAATG+TGG 0.602659 7_1:+78843346 None:intergenic
TCAGAGTGATCAAGTTGGTG+AGG 0.605937 7_1:-78843618 Msa1041250:CDS
AAGAATGAGAAATATTGAGA+GGG 0.609418 7_1:+78844306 None:intergenic
AATGTGTGTATAACGTGTCT+TGG 0.609557 7_1:+78842470 None:intergenic
CTTCTTCAGAGTGATCAAGT+TGG 0.613368 7_1:-78843623 Msa1041250:CDS
ATGGAAAGAGTATTCTAGAA+CGG 0.614937 7_1:-78842194 Msa1041250:CDS
ATGATTGGTTGCCTCAAACA+GGG 0.616738 7_1:-78841961 Msa1041250:CDS
TGATTGGTTGCCTCAAACAG+GGG 0.618420 7_1:-78841960 Msa1041250:CDS
TATCCACGTCTTCCAATGAG+TGG 0.622034 7_1:-78842355 Msa1041250:CDS
TTCAATGCAATCACTGCACA+AGG 0.625555 7_1:-78842328 Msa1041250:CDS
TTGAAAGGAAATCAGAGTTG+AGG 0.625641 7_1:+78843999 None:intergenic
TGTATAATTACCGAATGTTG+GGG 0.625668 7_1:+78843334 None:intergenic
ATTGCTAGAAGCTAAATCAT+CGG 0.626819 7_1:+78842246 None:intergenic
AGCACCTGCTGTGTTACGGA+TGG 0.634966 7_1:+78842567 None:intergenic
ATAATGTGATTAATGTTGCT+GGG 0.635060 7_1:-78842150 Msa1041250:CDS
TGTCCACTCATTGGAAGACG+TGG 0.636776 7_1:+78842352 None:intergenic
CGATTTATGAGTCAGTTAGT+CGG 0.649371 7_1:-78843652 Msa1041250:CDS
TTTATGAGTCAGTTAGTCGG+AGG 0.663720 7_1:-78843649 Msa1041250:CDS
ACAGATCCTAACCAAGACAC+AGG 0.667761 7_1:-78842301 Msa1041250:CDS
ATCTTGTAGTGCTCGCACAG+CGG 0.715861 7_1:+78844039 None:intergenic
TGTGGTGAGAGATATTGTGA+CGG 0.718292 7_1:-78843591 Msa1041250:CDS
AGCAGTGGCACTTAGAAACG+GGG 0.723770 7_1:-78842533 Msa1041250:CDS
GCACTGATGGTAGAGTGACG+TGG 0.734964 7_1:-78842051 Msa1041250:CDS
ATGTGATTAATGTTGCTGGG+TGG 0.776487 7_1:-78842147 Msa1041250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAACCAATA+TGG - chr7_1:78841717-78841736 Msa1041250:three_prime_UTR 10.0%
!!! TTTAAGTTTTAGTTTTTTTT+AGG + chr7_1:78842834-78842853 None:intergenic 10.0%
!! AGACATTAATTAATTAATTA+AGG + chr7_1:78844145-78844164 None:intergenic 10.0%
!! AGAAATAATTTAACTATTGT+GGG - chr7_1:78842892-78842911 Msa1041250:intron 15.0%
!! AATTATTAAATTGAAAACAG+AGG + chr7_1:78842995-78843014 None:intergenic 15.0%
!!! ATCAAGTAAAGATTTTATAT+AGG - chr7_1:78843362-78843381 Msa1041250:CDS 15.0%
!! TCTAACAAAGGATTTAAAAA+CGG - chr7_1:78842354-78842373 Msa1041250:CDS 20.0%
!! TTGATGAAAAAATATAGAAC+TGG + chr7_1:78842759-78842778 None:intergenic 20.0%
!!! AAACTTAAAGACATTTTTAC+TGG - chr7_1:78842845-78842864 Msa1041250:intron 20.0%
!! GAGAAATAATTTAACTATTG+TGG - chr7_1:78842891-78842910 Msa1041250:intron 20.0%
!! GAAATAATTTAACTATTGTG+GGG - chr7_1:78842893-78842912 Msa1041250:intron 20.0%
!!! ATCGTTTTTGACATATTTTA+GGG + chr7_1:78842960-78842979 None:intergenic 20.0%
!!! TATCGTTTTTGACATATTTT+AGG + chr7_1:78842961-78842980 None:intergenic 20.0%
!! ACACAAAATATATACATTAG+CGG - chr7_1:78843238-78843257 Msa1041250:intron 20.0%
!! GGTATGTTAAAAAAAATGTT+TGG + chr7_1:78843269-78843288 None:intergenic 20.0%
!!! AGTTTTATAAATAAAGACTG+AGG - chr7_1:78843311-78843330 Msa1041250:intron 20.0%
!!! ATTTTACAAAGTAGTTATAG+TGG + chr7_1:78844252-78844271 None:intergenic 20.0%
!! AACTACTTTGTAAAATAAGT+TGG - chr7_1:78844256-78844275 Msa1041250:CDS 20.0%
! AAGAATGAGAAATATTGAGA+GGG + chr7_1:78841761-78841780 None:intergenic 25.0%
! AAAGAATGAGAAATATTGAG+AGG + chr7_1:78841762-78841781 None:intergenic 25.0%
! AAAGCTAACGTTTATGATTA+TGG - chr7_1:78841910-78841929 Msa1041250:three_prime_UTR 25.0%
!! ATATTTTCTCCTTGTAAACT+TGG + chr7_1:78842129-78842148 None:intergenic 25.0%
! CTAACAAAGGATTTAAAAAC+GGG - chr7_1:78842355-78842374 Msa1041250:CDS 25.0%
!!! AAGACTTTTTTGATGATGAT+TGG - chr7_1:78842639-78842658 Msa1041250:intron 25.0%
! ATTAACAAGACTATTATCAC+TGG - chr7_1:78842669-78842688 Msa1041250:intron 25.0%
! ATGTATAATTACCGAATGTT+GGG + chr7_1:78842734-78842753 None:intergenic 25.0%
! AATGTATAATTACCGAATGT+TGG + chr7_1:78842735-78842754 None:intergenic 25.0%
! TTTATACGTTTATGCACAAA+AGG - chr7_1:78843178-78843197 Msa1041250:intron 25.0%
! ATAATGTGATTAATGTTGCT+GGG - chr7_1:78843914-78843933 Msa1041250:CDS 25.0%
! TATGCTGAGTTTAATAATAC+TGG - chr7_1:78843979-78843998 Msa1041250:CDS 25.0%
! ATGCTGAGTTTAATAATACT+GGG - chr7_1:78843980-78843999 Msa1041250:CDS 25.0%
!! TCACTTTGTTCTTTTTCTTT+TGG - chr7_1:78844215-78844234 Msa1041250:CDS 25.0%
!! CACTTTGTTCTTTTTCTTTT+GGG - chr7_1:78844216-78844235 Msa1041250:CDS 25.0%
! TTGCTTAATTCAACATTTGT+CGG + chr7_1:78844313-78844332 None:intergenic 25.0%
! ATAGCATTTTCACAAAACAC+CGG - chr7_1:78841793-78841812 Msa1041250:three_prime_UTR 30.0%
!!! TCATAAACGTTAGCTTTTTG+AGG + chr7_1:78841907-78841926 None:intergenic 30.0%
! GTTGGAGATATTTGTTGATT+AGG + chr7_1:78841984-78842003 None:intergenic 30.0%
CAGTTTGAAAAGAGTTTGAA+AGG + chr7_1:78842083-78842102 None:intergenic 30.0%
AAGTTTCTTCCAAGTTTACA+AGG - chr7_1:78842117-78842136 Msa1041250:CDS 30.0%
TCTCTTGCTTTCTTTACTAA+AGG - chr7_1:78842282-78842301 Msa1041250:CDS 30.0%
TTGCTTTCTTTACTAAAGGT+TGG - chr7_1:78842286-78842305 Msa1041250:CDS 30.0%
TGCTTTCTTTACTAAAGGTT+GGG - chr7_1:78842287-78842306 Msa1041250:CDS 30.0%
!! ATTTTGAAAGGCGGTTTTAT+TGG + chr7_1:78842325-78842344 None:intergenic 30.0%
!! AGAGTGTTTGGAATTTTGAA+AGG + chr7_1:78842337-78842356 None:intergenic 30.0%
AATTCCAAACACTCTAACAA+AGG - chr7_1:78842342-78842361 Msa1041250:CDS 30.0%
! AAATCCTTTGTTAGAGTGTT+TGG + chr7_1:78842349-78842368 None:intergenic 30.0%
TCGCTAGAAACAGATTTATT+TGG + chr7_1:78842555-78842574 None:intergenic 30.0%
!! AATAAATCTGTTTCTAGCGA+TGG - chr7_1:78842555-78842574 Msa1041250:CDS 30.0%
!! ATAAATCTGTTTCTAGCGAT+GGG - chr7_1:78842556-78842575 Msa1041250:CDS 30.0%
! TTTTTGATCTATGTTACTGC+TGG - chr7_1:78842582-78842601 Msa1041250:CDS 30.0%
!!! TTTTTGATGATGATTGGAGA+TGG - chr7_1:78842645-78842664 Msa1041250:intron 30.0%
TGTATAATTACCGAATGTTG+GGG + chr7_1:78842733-78842752 None:intergenic 30.0%
TACAGAGAATGTGACATTTA+TGG - chr7_1:78843631-78843650 Msa1041250:CDS 30.0%
GGAACAGTAGATTTCATATT+CGG - chr7_1:78843652-78843671 Msa1041250:CDS 30.0%
TTTCATATTCGGAAATGCTA+AGG - chr7_1:78843663-78843682 Msa1041250:CDS 30.0%
TTGCTTTAATTGTACAGTTG+TGG + chr7_1:78843798-78843817 None:intergenic 30.0%
ATTGCTAGAAGCTAAATCAT+CGG + chr7_1:78843821-78843840 None:intergenic 30.0%
!! ATGGAAAGAGTATTCTAGAA+CGG - chr7_1:78843870-78843889 Msa1041250:CDS 30.0%
GGTTTACATGCAAACATTTA+TGG - chr7_1:78843891-78843910 Msa1041250:CDS 30.0%
GATAATGTGATTAATGTTGC+TGG - chr7_1:78843913-78843932 Msa1041250:CDS 30.0%
! TACAAAGTAGTTATAGTGGA+AGG + chr7_1:78844248-78844267 None:intergenic 30.0%
!! AATTGGATTTGGACTAGTAC+CGG + chr7_1:78841815-78841834 None:intergenic 35.0%
GAGATAGGTGTAATTGGATT+TGG + chr7_1:78841826-78841845 None:intergenic 35.0%
! GAATGGATTTGCAATAGGTT+GGG + chr7_1:78841879-78841898 None:intergenic 35.0%
! AGAATGGATTTGCAATAGGT+TGG + chr7_1:78841880-78841899 None:intergenic 35.0%
!!! AAACGTTAGCTTTTTGAGGT+GGG + chr7_1:78841903-78841922 None:intergenic 35.0%
!!! TAAACGTTAGCTTTTTGAGG+TGG + chr7_1:78841904-78841923 None:intergenic 35.0%
TTGAAAGGAAATCAGAGTTG+AGG + chr7_1:78842068-78842087 None:intergenic 35.0%
GACAAACCAACAAACATGTT+TGG - chr7_1:78842173-78842192 Msa1041250:CDS 35.0%
AACCAACAAACATGTTTGGA+TGG - chr7_1:78842177-78842196 Msa1041250:CDS 35.0%
TTAAAGACACATCTTCAGCT+TGG - chr7_1:78842202-78842221 Msa1041250:CDS 35.0%
!! AGTTTGGTGTCATTAGAAAG+TGG + chr7_1:78842252-78842271 None:intergenic 35.0%
AAGAGAGACACTATAGAGTT+TGG + chr7_1:78842268-78842287 None:intergenic 35.0%
!!! AAGGCGGTTTTATTGGTTTT+GGG + chr7_1:78842318-78842337 None:intergenic 35.0%
!!! AAAGGCGGTTTTATTGGTTT+TGG + chr7_1:78842319-78842338 None:intergenic 35.0%
!! GTGTTTGGAATTTTGAAAGG+CGG + chr7_1:78842334-78842353 None:intergenic 35.0%
CGATTTATGAGTCAGTTAGT+CGG - chr7_1:78842412-78842431 Msa1041250:CDS 35.0%
AGATACACGTTCTTTGCAAA+TGG + chr7_1:78843416-78843435 None:intergenic 35.0%
! TTTTATGAATGTTGCAGCTG+TGG - chr7_1:78843444-78843463 Msa1041250:CDS 35.0%
! TTTTACAGTTGCAGTTTCGA+AGG - chr7_1:78843568-78843587 Msa1041250:CDS 35.0%
TTTACAGTTGCAGTTTCGAA+GGG - chr7_1:78843569-78843588 Msa1041250:CDS 35.0%
AATGTGTGTATAACGTGTCT+TGG + chr7_1:78843597-78843616 None:intergenic 35.0%
! GTGGATAGAGGTTACAATTT+TGG + chr7_1:78843696-78843715 None:intergenic 35.0%
! GATGATTTAGCTTCTAGCAA+TGG - chr7_1:78843820-78843839 Msa1041250:CDS 35.0%
!! TGGTGCTGTTTCAACATATT+TGG - chr7_1:78843840-78843859 Msa1041250:CDS 35.0%
!! GGTGCTGTTTCAACATATTT+GGG - chr7_1:78843841-78843860 Msa1041250:CDS 35.0%
!! GTTCTAGAATACTCTTTCCA+TGG + chr7_1:78843871-78843890 None:intergenic 35.0%
CTATCATGTGATTAATGCCA+CGG - chr7_1:78844041-78844060 Msa1041250:CDS 35.0%
!! ATTTCTTGCTTGGTGATGAT+TGG - chr7_1:78844088-78844107 Msa1041250:CDS 35.0%
ACATAGCTTGGAAGCCATAT+TGG + chr7_1:78841734-78841753 None:intergenic 40.0%
!! TGAGAGGGTATTACATAGCT+TGG + chr7_1:78841746-78841765 None:intergenic 40.0%
! ATTTGCAATAGGTTGGGTCA+GGG + chr7_1:78841873-78841892 None:intergenic 40.0%
! TGGGAGAATGGATTTGCAAT+AGG + chr7_1:78841884-78841903 None:intergenic 40.0%
GACCATCCAAACATGTTTGT+TGG + chr7_1:78842182-78842201 None:intergenic 40.0%
! TCAGCTTGGAGTTTTCGAAA+TGG - chr7_1:78842216-78842235 Msa1041250:CDS 40.0%
! GTTTTGCTCGTCATCTTAAG+CGG + chr7_1:78842387-78842406 None:intergenic 40.0%
TTTATGAGTCAGTTAGTCGG+AGG - chr7_1:78842415-78842434 Msa1041250:CDS 40.0%
CTTCTTCAGAGTGATCAAGT+TGG - chr7_1:78842441-78842460 Msa1041250:CDS 40.0%
TGTGGTGAGAGATATTGTGA+CGG - chr7_1:78842473-78842492 Msa1041250:CDS 40.0%
! ATTGTGACGGTTAGTCAAGA+TGG - chr7_1:78842486-78842505 Msa1041250:CDS 40.0%
GCATTGAATTGTCCACTCAT+TGG + chr7_1:78843724-78843743 None:intergenic 40.0%
TTCAATGCAATCACTGCACA+AGG - chr7_1:78843736-78843755 Msa1041250:CDS 40.0%
CAACATATTTGGGAAGACCA+TGG - chr7_1:78843851-78843870 Msa1041250:CDS 40.0%
ATGTGATTAATGTTGCTGGG+TGG - chr7_1:78843917-78843936 Msa1041250:CDS 40.0%
GAGTTTAATAATACTGGGCC+AGG - chr7_1:78843985-78844004 Msa1041250:CDS 40.0%
! CACGGATGCAGCTAATTTTA+CGG - chr7_1:78844059-78844078 Msa1041250:CDS 40.0%
! ATGATTGGTTGCCTCAAACA+GGG - chr7_1:78844103-78844122 Msa1041250:CDS 40.0%
CCTGGTGAGATAGGTGTAAT+TGG + chr7_1:78841832-78841851 None:intergenic 45.0%
CCAATTACACCTATCTCACC+AGG - chr7_1:78841829-78841848 Msa1041250:three_prime_UTR 45.0%
! TTTGCAATAGGTTGGGTCAG+GGG + chr7_1:78841872-78841891 None:intergenic 45.0%
! GATTTGCAATAGGTTGGGTC+AGG + chr7_1:78841874-78841893 None:intergenic 45.0%
!!! AGCTTTTTGAGGTGGGAGAA+TGG + chr7_1:78841896-78841915 None:intergenic 45.0%
!! TCAGAGTGATCAAGTTGGTG+AGG - chr7_1:78842446-78842465 Msa1041250:CDS 45.0%
!! TCAAGTTGGTGAGGATGTTG+TGG - chr7_1:78842455-78842474 Msa1041250:CDS 45.0%
! ACGGTTAGTCAAGATGGAAG+TGG - chr7_1:78842492-78842511 Msa1041250:CDS 45.0%
! GGCAATCACAGTGTTGTTGA+TGG - chr7_1:78842690-78842709 Msa1041250:intron 45.0%
!! ATCACAGTGTTGTTGATGGC+TGG - chr7_1:78842694-78842713 Msa1041250:intron 45.0%
ATTGTGGGGCTCACACATAA+TGG - chr7_1:78842907-78842926 Msa1041250:intron 45.0%
ATGAATGTTGCAGCTGTGGT+TGG - chr7_1:78843448-78843467 Msa1041250:CDS 45.0%
TGAATGTTGCAGCTGTGGTT+GGG - chr7_1:78843449-78843468 Msa1041250:CDS 45.0%
CAAGCAGTGGCACTTAGAAA+CGG - chr7_1:78843529-78843548 Msa1041250:CDS 45.0%
AAGCAGTGGCACTTAGAAAC+GGG - chr7_1:78843530-78843549 Msa1041250:CDS 45.0%
TCATTGGAAGACGTGGATAG+AGG + chr7_1:78843708-78843727 None:intergenic 45.0%
TATCCACGTCTTCCAATGAG+TGG - chr7_1:78843709-78843728 Msa1041250:CDS 45.0%
ACAGATCCTAACCAAGACAC+AGG - chr7_1:78843763-78843782 Msa1041250:CDS 45.0%
GATGTACCTGTGTCTTGGTT+AGG + chr7_1:78843772-78843791 None:intergenic 45.0%
GGATTGATGTACCTGTGTCT+TGG + chr7_1:78843777-78843796 None:intergenic 45.0%
CGTAAAATTAGCTGCATCCG+TGG + chr7_1:78844061-78844080 None:intergenic 45.0%
! GGATGCAGCTAATTTTACGG+TGG - chr7_1:78844062-78844081 Msa1041250:CDS 45.0%
ACGGTGGCAAATTTCTTGCT+TGG - chr7_1:78844078-78844097 Msa1041250:CDS 45.0%
! GATGATTGGTTGCCTCAAAC+AGG - chr7_1:78844102-78844121 Msa1041250:CDS 45.0%
! TGATTGGTTGCCTCAAACAG+GGG - chr7_1:78844104-78844123 Msa1041250:CDS 45.0%
!!! TTTTTTTTATAATATTTTAC+AGG + chr7_1:78843290-78843309 None:intergenic 5.0%
ATCTTGTAGTGCTCGCACAG+CGG + chr7_1:78842028-78842047 None:intergenic 50.0%
GAATCGCGCTGAGCAATGTT+TGG + chr7_1:78842152-78842171 None:intergenic 50.0%
!! GTTGATGGCTGGACCACATT+CGG - chr7_1:78842705-78842724 Msa1041250:intron 50.0%
ACATTCGGCTCCCCAACATT+CGG - chr7_1:78842720-78842739 Msa1041250:intron 50.0%
! TGGGGCTCACACATAATGGA+GGG - chr7_1:78842911-78842930 Msa1041250:intron 50.0%
ATGACCATCCGTAACACAGC+AGG - chr7_1:78843493-78843512 Msa1041250:CDS 50.0%
TCACAGCACCTGCTGTGTTA+CGG + chr7_1:78843504-78843523 None:intergenic 50.0%
! CGTTTCTAAGTGCCACTGCT+TGG + chr7_1:78843531-78843550 None:intergenic 50.0%
AGCAGTGGCACTTAGAAACG+GGG - chr7_1:78843531-78843550 Msa1041250:CDS 50.0%
TGTCCACTCATTGGAAGACG+TGG + chr7_1:78843715-78843734 None:intergenic 50.0%
GTGTAAGACACCCCTGTTTG+AGG + chr7_1:78844117-78844136 None:intergenic 50.0%
CATGCTGCTCCTGGTGAGAT+AGG + chr7_1:78841841-78841860 None:intergenic 55.0%
GTGGATTTGCATGCTGCTCC+TGG + chr7_1:78841850-78841869 None:intergenic 55.0%
TGGAAAGAGTGGAGCGACGT+TGG + chr7_1:78842002-78842021 None:intergenic 55.0%
AGTTGAGGTCGCTGAGCGAT+TGG + chr7_1:78842053-78842072 None:intergenic 55.0%
GAATGTTGGGGAGCCGAATG+TGG + chr7_1:78842721-78842740 None:intergenic 55.0%
GTGGGGCTCACACATAATGG+AGG - chr7_1:78842910-78842929 Msa1041250:intron 55.0%
TGTGGTTGGGCAAGGATTCG+TGG - chr7_1:78843462-78843481 Msa1041250:CDS 55.0%
GTGGTTGGGCAAGGATTCGT+GGG - chr7_1:78843463-78843482 Msa1041250:CDS 55.0%
AGCACCTGCTGTGTTACGGA+TGG + chr7_1:78843500-78843519 None:intergenic 55.0%
! TGCTGTGAAGCACCAAGCAG+TGG - chr7_1:78843516-78843535 Msa1041250:CDS 55.0%
CTACCATCAGTGCTAGAGCC+TGG + chr7_1:78844006-78844025 None:intergenic 55.0%
! GCACTGATGGTAGAGTGACG+TGG - chr7_1:78844013-78844032 Msa1041250:CDS 55.0%
GATGGTAGAGTGACGTGGCA+AGG - chr7_1:78844018-78844037 Msa1041250:CDS 55.0%
! GCAATAGGTTGGGTCAGGGG+TGG + chr7_1:78841869-78841888 None:intergenic 60.0%
!! CACAGCGGTGGTGGAAAGAG+TGG + chr7_1:78842013-78842032 None:intergenic 60.0%
TTGTAGTGCTCGCACAGCGG+TGG + chr7_1:78842025-78842044 None:intergenic 60.0%
GTTGCAGCTGTGGTTGGGCA+AGG - chr7_1:78843454-78843473 Msa1041250:CDS 60.0%
ATGTTGCTGGGTGGCGTGCT+TGG - chr7_1:78843926-78843945 Msa1041250:CDS 60.0%
TGTTGCTGGGTGGCGTGCTT+GGG - chr7_1:78843927-78843946 Msa1041250:CDS 60.0%
TAGTGCTCGCACAGCGGTGG+TGG + chr7_1:78842022-78842041 None:intergenic 65.0%
! GGGCCAGGCTCTAGCACTGA+TGG - chr7_1:78844000-78844019 Msa1041250:CDS 65.0%
GCTGGGTGGCGTGCTTGGGA+TGG - chr7_1:78843931-78843950 Msa1041250:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 78841709 78844377 78841709 ID=Msa1041250;Name=Msa1041250
chr7_1 mRNA 78841709 78844377 78841709 ID=Msa1041250-mRNA-1;Parent=Msa1041250;Name=Msa1041250-mRNA-1;_AED=0.23;_eAED=0.23;_QI=27|1|1|1|1|1|2|222|566
chr7_1 exon 78841709 78842625 78841709 ID=Msa1041250-mRNA-1:exon:21123;Parent=Msa1041250-mRNA-1
chr7_1 exon 78843345 78844377 78843345 ID=Msa1041250-mRNA-1:exon:21122;Parent=Msa1041250-mRNA-1
chr7_1 five_prime_UTR 78844351 78844377 78844351 ID=Msa1041250-mRNA-1:five_prime_utr;Parent=Msa1041250-mRNA-1
chr7_1 CDS 78843345 78844350 78843345 ID=Msa1041250-mRNA-1:cds;Parent=Msa1041250-mRNA-1
chr7_1 CDS 78841931 78842625 78841931 ID=Msa1041250-mRNA-1:cds;Parent=Msa1041250-mRNA-1
chr7_1 three_prime_UTR 78841709 78841930 78841709 ID=Msa1041250-mRNA-1:three_prime_utr;Parent=Msa1041250-mRNA-1
Gene Sequence

>Msa1041250

ATGGCTTCCAAGCTATGTAATACCCTCTCAATATTTCTCATTCTTTTATCTGTCTCTATAGCATTTTCACAAAACACCGGTACTAGTCCAAATCCAATTACACCTATCTCACCAGGAGCAGCATGCAAATCCACCCCTGACCCAACCTATTGCAAATCCATTCTCCCACCTCAAAAAGCTAACGTTTATGATTATGGTCGATTTTCAGTCAAAAAATCACTATCACAATCTCGACAATTCTCAAACCTAATCAACAAATATCTCCAACGTCGCTCCACTCTTTCCACCACCGCTGTGCGAGCACTACAAGATTGCCAATCGCTCAGCGACCTCAACTCTGATTTCCTTTCAAACTCTTTTCAAACTGTTAACAAAACAACAAAGTTTCTTCCAAGTTTACAAGGAGAAAATATCCAAACATTGCTCAGCGCGATTCTGACAAACCAACAAACATGTTTGGATGGTCTTAAAGACACATCTTCAGCTTGGAGTTTTCGAAATGGACTCACAATTCCACTTTCTAATGACACCAAACTCTATAGTGTCTCTCTTGCTTTCTTTACTAAAGGTTGGGTTAATCCCAAAACCAATAAAACCGCCTTTCAAAATTCCAAACACTCTAACAAAGGATTTAAAAACGGGCGTCTACCGCTTAAGATGACGAGCAAAACACGCGCGATTTATGAGTCAGTTAGTCGGAGGAAACTTCTTCAGAGTGATCAAGTTGGTGAGGATGTTGTGGTGAGAGATATTGTGACGGTTAGTCAAGATGGAAGTGGAAACTTTACTACGATTAATGATGCTATTGCTGCAGCTCCAAATAAATCTGTTTCTAGCGATGGGTATTTTTTGATCTATGTTACTGCTGGTGTTTATGAAGAATATGTTACTATTGATAAGAAAAAGACTTTTTTGATGATGATTGGAGATGGTATTAACAAGACTATTATCACTGGCAATCACAGTGTTGTTGATGGCTGGACCACATTCGGCTCCCCAACATTCGCTGTGGTTGGGCAAGGATTCGTGGGTGTGAACATGACCATCCGTAACACAGCAGGTGCTGTGAAGCACCAAGCAGTGGCACTTAGAAACGGGGCAGATTTATCAACATTTTACAGTTGCAGTTTCGAAGGGTACCAAGACACGTTATACACACATTCACTAAGACAATTCTACAGAGAATGTGACATTTATGGAACAGTAGATTTCATATTCGGAAATGCTAAGGTTGTTTTCCAAAATTGTAACCTCTATCCACGTCTTCCAATGAGTGGACAATTCAATGCAATCACTGCACAAGGAAGAACAGATCCTAACCAAGACACAGGTACATCAATCCACAACTGTACAATTAAAGCAACCGATGATTTAGCTTCTAGCAATGGTGCTGTTTCAACATATTTGGGAAGACCATGGAAAGAGTATTCTAGAACGGTTTACATGCAAACATTTATGGATAATGTGATTAATGTTGCTGGGTGGCGTGCTTGGGATGGAGAATTTGCATTGAGCACATTGTATTATGCTGAGTTTAATAATACTGGGCCAGGCTCTAGCACTGATGGTAGAGTGACGTGGCAAGGCTATCATGTGATTAATGCCACGGATGCAGCTAATTTTACGGTGGCAAATTTCTTGCTTGGTGATGATTGGTTGCCTCAAACAGGGGTGTCTTACACTAATTCCTTAATTAATTAA
Protein sequence

>Msa1041250

MASKLCNTLSIFLILLSVSIAFSQNTGTSPNPITPISPGAACKSTPDPTYCKSILPPQKANVYDYGRFSVKKSLSQSRQFSNLINKYLQRRSTLSTTAVRALQDCQSLSDLNSDFLSNSFQTVNKTTKFLPSLQGENIQTLLSAILTNQQTCLDGLKDTSSAWSFRNGLTIPLSNDTKLYSVSLAFFTKGWVNPKTNKTAFQNSKHSNKGFKNGRLPLKMTSKTRAIYESVSRRKLLQSDQVGEDVVVRDIVTVSQDGSGNFTTINDAIAAAPNKSVSSDGYFLIYVTAGVYEEYVTIDKKKTFLMMIGDGINKTIITGNHSVVDGWTTFGSPTFAVVGQGFVGVNMTIRNTAGAVKHQAVALRNGADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAKVVFQNCNLYPRLPMSGQFNAITAQGRTDPNQDTGTSIHNCTIKATDDLASSNGAVSTYLGRPWKEYSRTVYMQTFMDNVINVAGWRAWDGEFALSTLYYAEFNNTGPGSSTDGRVTWQGYHVINATDAANFTVANFLLGDDWLPQTGVSYTNSLIN*