AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0947520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0947520 MtrunA17_Chr6g0461991 99.796 490 1 0 1 490 1 490 0.0 1018
Msa0947520 MtrunA17_Chr3g0099931 25.131 382 258 7 101 467 111 479 1.23e-34 135
Msa0947520 MtrunA17_Chr5g0430851 24.869 382 259 7 101 467 111 479 2.98e-34 134
Msa0947520 MtrunA17_Chr3g0078851 25.882 340 206 6 143 462 142 455 6.30e-22 98.6
Msa0947520 MtrunA17_Chr1g0153091 27.679 224 125 5 103 297 16 231 2.33e-16 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0947520 AT5G23670.1 85.031 481 72 0 1 481 1 481 0.0 876
Msa0947520 AT5G23670.2 85.031 481 72 0 1 481 1 481 0.0 876
Msa0947520 AT3G48780.2 83.542 480 79 0 1 480 1 480 0.0 864
Msa0947520 AT3G48780.1 83.542 480 79 0 1 480 1 480 0.0 864
Msa0947520 AT3G48790.1 76.149 348 76 1 143 490 7 347 0.0 561
Msa0947520 AT3G48790.2 75.776 322 71 1 169 490 1 315 0.0 518
Msa0947520 AT4G36480.2 25.745 369 246 8 103 456 112 467 7.86e-32 128
Msa0947520 AT4G36480.1 25.745 369 246 8 103 456 112 467 7.86e-32 128
Msa0947520 AT5G04620.2 25.641 390 247 8 95 466 97 461 1.82e-26 112
Msa0947520 AT5G04620.1 27.193 342 207 7 143 466 11 328 3.46e-26 109
Msa0947520 AT4G36480.3 29.565 230 152 4 103 329 112 334 1.93e-25 107
Msa0947520 AT5G04620.3 25.926 270 170 5 95 346 97 354 1.31e-19 91.7

Find 164 sgRNAs with CRISPR-Local

Find 66 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCGGATCTTTGCAAGTTTC+TGG -0.006417 6_3:+30405198 None:intergenic
CCTTGAGAAGGCAGGGATTT+TGG 0.130317 6_3:+30405076 None:intergenic
TTTATAGGCATATACATATT+TGG 0.174681 6_3:-30407633 Msa0947520:intron
TTCCAGGGCCTATGTGTTCT+TGG 0.189231 6_3:+30408475 None:intergenic
TAGATTATATCTTCGGATTC+AGG 0.217064 6_3:-30413648 Msa0947520:intron
TGAAGGAACCTGAAGATTAT+TGG 0.257979 6_3:+30413952 None:intergenic
AACCACAACTCAATTGTTAA+TGG 0.265196 6_3:-30409226 Msa0947520:CDS
TGCTATTCTTCCGGTCTTGA+TGG 0.282578 6_3:-30409366 Msa0947520:CDS
TCTTCCATAAAAGTTATTCT+TGG 0.284948 6_3:-30405375 Msa0947520:CDS
TCCGAAAACAAAAGATTATA+TGG 0.285098 6_3:+30403812 None:intergenic
TACGGTTTGCTCTTCGCTTT+CGG 0.288207 6_3:-30414019 Msa0947520:CDS
TAAAGCATGATTGGCATTAC+AGG 0.302338 6_3:+30405107 None:intergenic
GCCAGTAGCAATGGGGTTGC+TGG 0.321595 6_3:+30404912 None:intergenic
GAGCAAACCGTAACTGAAAT+AGG 0.338413 6_3:+30414030 None:intergenic
GCTCTCGAACCAACGCGATT+CGG 0.339423 6_3:-30414152 Msa0947520:five_prime_UTR
GGTTATGCACCGATCTGTTT+AGG 0.340054 6_3:-30413692 Msa0947520:CDS
AGATGGGATTTGAAGTTCTT+GGG 0.340919 6_3:-30405142 Msa0947520:CDS
AAGATGGGATTTGAAGTTCT+TGG 0.344461 6_3:-30405143 Msa0947520:CDS
AATAACCATTATCTTCTTCC+AGG 0.349116 6_3:+30408459 None:intergenic
TCGGATCTTTGCAAGTTTCT+GGG 0.355382 6_3:+30405199 None:intergenic
AAGACATCGACTTACTTTAC+TGG 0.356195 6_3:+30409704 None:intergenic
CATGGTGATTTCAAACTAAC+TGG 0.358111 6_3:-30403893 Msa0947520:three_prime_UTR
TTGGGATCATATAACTATCT+TGG 0.360855 6_3:-30409678 Msa0947520:CDS
AAGGGGTGTTTGTGAGCTCT+TGG 0.362856 6_3:-30407573 Msa0947520:CDS
GGGACATTCACCAAATCATT+TGG 0.367081 6_3:-30407518 Msa0947520:CDS
CTCTCGAACCAACGCGATTC+GGG 0.369620 6_3:-30414151 Msa0947520:five_prime_UTR
GTGCAGTTCCAATAATCTTC+AGG 0.379110 6_3:-30413960 Msa0947520:intron
TGTTGCTTCGTTGGTTCAGC+AGG 0.388343 6_3:+30404033 None:intergenic
GTTAATGGTGCGCGGGGATC+AGG 0.391282 6_3:-30409211 Msa0947520:CDS
AAGTAAAATATGAAAATGTA+TGG 0.396011 6_3:+30414243 None:intergenic
TCCACATGATCCAAATGATT+TGG 0.396058 6_3:+30407508 None:intergenic
GATATTATTTGTTGTGCAGC+TGG 0.396206 6_3:+30405396 None:intergenic
GCATCAGGAGCACTTGATAT+TGG 0.396763 6_3:+30409970 None:intergenic
CATCTTCGAAAGTGAGGTCT+TGG 0.398848 6_3:-30403852 Msa0947520:three_prime_UTR
GACAAACTCTGCTATTCTTC+CGG 0.400770 6_3:-30409375 Msa0947520:CDS
ATTGGAGCTGTGGGCAAGAC+AGG 0.401548 6_3:-30407596 Msa0947520:CDS
AGACCTTACCAAGGCCTTGC+AGG 0.401800 6_3:-30404850 Msa0947520:intron
CAGGTCAGAATTGCAGAAGA+TGG 0.405068 6_3:-30405159 Msa0947520:CDS
ATATTCGTAGATTATATCTT+CGG 0.409758 6_3:-30413655 Msa0947520:CDS
GACAGCACTTCACAATGAAT+TGG 0.415510 6_3:-30409459 Msa0947520:CDS
CCTTCTCAAGGGAGTGCCTC+AGG 0.415913 6_3:-30405064 Msa0947520:CDS
ATCTTCGCCGCCGGCGGTGA+TGG 0.416441 6_3:+30414085 None:intergenic
GCTATTCTTCCGGTCTTGAT+GGG 0.419350 6_3:-30409365 Msa0947520:CDS
AGGTTATATTGCAGGATCTA+AGG 0.420449 6_3:-30407486 Msa0947520:intron
TGTTTGTGAGCTCTTGGGTG+TGG 0.428313 6_3:-30407567 Msa0947520:CDS
TCATGTGGAGGTTATATTGC+AGG 0.428713 6_3:-30407494 Msa0947520:CDS
AGCAGTGTAGGTGATCTAAT+TGG 0.428852 6_3:-30404069 Msa0947520:CDS
TCCAGCAACCCCATTGCTAC+TGG 0.437632 6_3:-30404913 Msa0947520:CDS
GCTGGGTTGTAAAGCATGAT+TGG 0.438158 6_3:+30405098 None:intergenic
GCATATCAGCTTCTCATTCA+AGG 0.439438 6_3:-30404875 Msa0947520:CDS
GAACCAACGCGATTCGGGTT+CGG 0.440299 6_3:-30414146 Msa0947520:five_prime_UTR
GGCGGTGATGGTGGCGGTGT+TGG 0.441956 6_3:+30414097 None:intergenic
CTCACAACCTATTTCAGTTA+CGG 0.442612 6_3:-30414037 Msa0947520:CDS
AGGGGTGTTTGTGAGCTCTT+GGG 0.442767 6_3:-30407572 Msa0947520:CDS
CTCAATTGTTAATGGTGCGC+GGG 0.442812 6_3:-30409218 Msa0947520:CDS
TGTTGGCGAGGCGGCGGTGA+GGG 0.445332 6_3:+30414114 None:intergenic
ATGTATGGGTTGTGTTTGGC+TGG 0.445783 6_3:+30414258 None:intergenic
TAGATTGAAGGGAAGGGAAA+GGG 0.447639 6_3:+30414197 None:intergenic
CTCCAAGCACTTGCAGTACC+CGG 0.449501 6_3:-30409596 Msa0947520:CDS
GCTTTCTCTCTCTAGATTGA+AGG 0.457137 6_3:+30414185 None:intergenic
ATGAATACGAAGATTATTGA+AGG 0.465959 6_3:-30403951 Msa0947520:three_prime_UTR
GTGCTCTAGCCAGTAGCAAT+GGG 0.469424 6_3:+30404904 None:intergenic
GAAAATGTATGGGTTGTGTT+TGG 0.472341 6_3:+30414254 None:intergenic
GCGAGGCGGCGGTGAGGGAT+CGG 0.473802 6_3:+30414119 None:intergenic
AAAGTTATTCTTGGCGAAGA+TGG 0.473909 6_3:-30405366 Msa0947520:CDS
AGGCACTCCCTTGAGAAGGC+AGG 0.474944 6_3:+30405068 None:intergenic
TCTTGTTGTTGTTGCTTCGT+TGG 0.475549 6_3:+30404024 None:intergenic
GAAGTTGCATAAAGATGTGC+AGG 0.479396 6_3:+30405429 None:intergenic
TTGCATATAGCTATGACCTC+TGG 0.480390 6_3:+30408394 None:intergenic
CTCTCTCTAGATTGAAGGGA+AGG 0.484764 6_3:+30414190 None:intergenic
AGTAAGTCGATGTCTTAACT+TGG 0.490464 6_3:-30409697 Msa0947520:CDS
ACCCGGGTACTGCAAGTGCT+TGG 0.490715 6_3:+30409594 None:intergenic
ATCGCTATCATCTTCGCCGC+CGG 0.490856 6_3:+30414076 None:intergenic
TGCTGATATTGATATTATGA+TGG 0.491151 6_3:-30407540 Msa0947520:CDS
CAAGACCTCACTTTCGAAGA+TGG 0.491790 6_3:+30403853 None:intergenic
TAGGCCCTGGAAGAAGATAA+TGG 0.496204 6_3:-30408464 Msa0947520:CDS
ACCAAATCATTTGGATCATG+TGG 0.496543 6_3:-30407509 Msa0947520:CDS
AGGTCAGAATTGCAGAAGAT+GGG 0.499602 6_3:-30405158 Msa0947520:CDS
GAGCTGTGGGCAAGACAGGA+AGG 0.499919 6_3:-30407592 Msa0947520:CDS
ATAGAGCTGTAGTTATTGTA+AGG 0.500227 6_3:-30403928 Msa0947520:three_prime_UTR
TGGCGGTGTTGGCGAGGCGG+CGG 0.500793 6_3:+30414108 None:intergenic
TATCAAGTGCTCCTGATGCT+TGG 0.504033 6_3:-30409966 Msa0947520:CDS
TTGGATGAAGCACACAGCAT+TGG 0.505271 6_3:-30407614 Msa0947520:CDS
ATATTATTTGTTGTGCAGCT+GGG 0.510480 6_3:+30405397 None:intergenic
GCTGTGGGCAAGACAGGAAG+GGG 0.511167 6_3:-30407590 Msa0947520:CDS
AAGATAATGGTTATTGTGGA+GGG 0.512429 6_3:-30408451 Msa0947520:CDS
CATATCAGCTTCTCATTCAA+GGG 0.517556 6_3:-30404874 Msa0947520:CDS
TCGTAGGTTATTAGCAGTGT+AGG 0.517821 6_3:-30404081 Msa0947520:intron
AACACTTCTTCTAGATGTGC+TGG 0.517825 6_3:+30408523 None:intergenic
GTGTTGGCGAGGCGGCGGTG+AGG 0.518340 6_3:+30414113 None:intergenic
CACCATTAACAATTGAGTTG+TGG 0.520038 6_3:+30409224 None:intergenic
TTGGCTGGAGATGATTCAAA+TGG 0.520076 6_3:+30414273 None:intergenic
AATACACACCTGCAAGGCCT+TGG 0.520353 6_3:+30404842 None:intergenic
CCAAAATCCCTGCCTTCTCA+AGG 0.521117 6_3:-30405076 Msa0947520:CDS
GCCGCCGGCGGTGATGGTGG+CGG 0.521750 6_3:+30414091 None:intergenic
TATACACATCATCTAATGAC+GGG 0.522159 6_3:+30403779 None:intergenic
CTAGATTGAAGGGAAGGGAA+AGG 0.522329 6_3:+30414196 None:intergenic
ACTACATCAAACCAAGCATC+AGG 0.526562 6_3:+30409955 None:intergenic
GGCGAAGATGGTTCAAGTCG+AGG 0.527475 6_3:-30405354 Msa0947520:intron
GAAGATAATGGTTATTGTGG+AGG 0.528355 6_3:-30408452 Msa0947520:CDS
AGCCAAGAACACATAGGCCC+TGG 0.529238 6_3:-30408477 Msa0947520:CDS
AACACCTACCTCCATCCACC+CGG 0.529626 6_3:+30409577 None:intergenic
CGTGCTCTAGCCAGTAGCAA+TGG 0.529943 6_3:+30404903 None:intergenic
AACACCGCCACCATCACCGC+CGG 0.530695 6_3:-30414095 Msa0947520:five_prime_UTR
GAAGAAGATAATGGTTATTG+TGG 0.532678 6_3:-30408455 Msa0947520:CDS
CTTTCTCTCTCTAGATTGAA+GGG 0.536115 6_3:+30414186 None:intergenic
TGATGGTGGCGGTGTTGGCG+AGG 0.537970 6_3:+30414102 None:intergenic
AGCACACAGCATTGGAGCTG+TGG 0.542128 6_3:-30407606 Msa0947520:CDS
TTCGCCGCCGGCGGTGATGG+TGG 0.545187 6_3:+30414088 None:intergenic
TCTTCCGGTCTTGATGGGGA+AGG 0.547239 6_3:-30409360 Msa0947520:intron
GATGGGATTTGAAGTTCTTG+GGG 0.548122 6_3:-30405141 Msa0947520:CDS
GTTGTGAGTGCAGTGAGATA+CGG 0.551717 6_3:+30414052 None:intergenic
ATAACCATTATCTTCTTCCA+GGG 0.552346 6_3:+30408460 None:intergenic
GGCACTCCCTTGAGAAGGCA+GGG 0.562551 6_3:+30405069 None:intergenic
CCAACCTTCCCCATCAAGAC+CGG 0.565338 6_3:+30409356 None:intergenic
ACTTGCAGTACCCGGGTGGA+TGG 0.568260 6_3:-30409588 Msa0947520:CDS
GCACACAGCATTGGAGCTGT+GGG 0.572363 6_3:-30407605 Msa0947520:CDS
GTAAGTCGATGTCTTAACTT+GGG 0.573929 6_3:-30409696 Msa0947520:CDS
AGATTGAAGGGAAGGGAAAG+GGG 0.574426 6_3:+30414198 None:intergenic
CTATTCTTCCGGTCTTGATG+GGG 0.578052 6_3:-30409364 Msa0947520:CDS
TCTCTCTAGATTGAAGGGAA+GGG 0.578849 6_3:+30414191 None:intergenic
GCTATCATCTTCGCCGCCGG+CGG 0.580983 6_3:+30414079 None:intergenic
TGTTGCCATCTTCGAAAGTG+AGG 0.583134 6_3:-30403858 Msa0947520:three_prime_UTR
TATTATTTGTTGTGCAGCTG+GGG 0.583240 6_3:+30405398 None:intergenic
TCCAAGCACTTGCAGTACCC+GGG 0.584468 6_3:-30409595 Msa0947520:CDS
AGTAAAATATGAAAATGTAT+GGG 0.585225 6_3:+30414244 None:intergenic
CCTGAGGCACTCCCTTGAGA+AGG 0.586563 6_3:+30405064 None:intergenic
CTATACACATCATCTAATGA+CGG 0.586611 6_3:+30403778 None:intergenic
AGCTGTGGGCAAGACAGGAA+GGG 0.586982 6_3:-30407591 Msa0947520:CDS
ATATATTCAATTGAATTCAA+CGG 0.588470 6_3:-30414298 None:intergenic
GAGGGGATATACAGCATGGA+AGG 0.589376 6_3:-30408433 Msa0947520:CDS
ACACCTGCAAGGCCTTGGTA+AGG 0.589912 6_3:+30404847 None:intergenic
ACCGCCACCATCACCGCCGG+CGG 0.590809 6_3:-30414092 Msa0947520:five_prime_UTR
TGGTGGCGGTGTTGGCGAGG+CGG 0.591566 6_3:+30414105 None:intergenic
TGGCTGGAGATGATTCAAAT+GGG 0.593940 6_3:+30414274 None:intergenic
ATGCTCTCACATTCTGCCTG+AGG 0.595562 6_3:+30405048 None:intergenic
TCTTCAAGTCCTAAACAGAT+CGG 0.597403 6_3:+30413683 None:intergenic
GCTGATATTGATATTATGAT+GGG 0.597573 6_3:-30407539 Msa0947520:CDS
AGCACTTCACAATGAATTGG+AGG 0.599950 6_3:-30409456 Msa0947520:CDS
AGATAATGGTTATTGTGGAG+GGG 0.602319 6_3:-30408450 Msa0947520:CDS
TGCAGTACCCGGGTGGATGG+AGG 0.604267 6_3:-30409585 Msa0947520:intron
GTTGCTTCGTTGGTTCAGCA+GGG 0.605794 6_3:+30404034 None:intergenic
CAAAATCCCTGCCTTCTCAA+GGG 0.606834 6_3:-30405075 Msa0947520:CDS
AAATCATTTGGATCATGTGG+AGG 0.617237 6_3:-30407506 Msa0947520:CDS
ACTCAATTGTTAATGGTGCG+CGG 0.623218 6_3:-30409219 Msa0947520:CDS
GATCCGAACCCGAATCGCGT+TGG 0.625681 6_3:+30414143 None:intergenic
ACGAAGCAACAACAACAAGA+TGG 0.626909 6_3:-30404021 Msa0947520:CDS
TCAATTGTTAATGGTGCGCG+GGG 0.631969 6_3:-30409217 Msa0947520:CDS
TGTGGAGGGGATATACAGCA+TGG 0.637466 6_3:-30408437 Msa0947520:CDS
AGAGCTTTGCAAACTTCCAG+AGG 0.643274 6_3:-30408410 Msa0947520:CDS
TTCAATGTATCAATCACTCG+AGG 0.654322 6_3:+30409627 None:intergenic
ACACCTACCTCCATCCACCC+GGG 0.655848 6_3:+30409578 None:intergenic
CAGTTAGTTTGAAATCACCA+TGG 0.660874 6_3:+30403894 None:intergenic
ATTCAAAATACACACCTGCA+AGG 0.666529 6_3:+30404836 None:intergenic
GTTACGAGAACAAATTGCTG+AGG 0.666746 6_3:-30408503 Msa0947520:CDS
ATTATTTGTTGTGCAGCTGG+GGG 0.677207 6_3:+30405399 None:intergenic
TTACGAGAACAAATTGCTGA+GGG 0.680475 6_3:-30408502 Msa0947520:CDS
TGCTCTAGCCAGTAGCAATG+GGG 0.685686 6_3:+30404905 None:intergenic
AAGCACTTGCAGTACCCGGG+TGG 0.689971 6_3:-30409592 Msa0947520:CDS
AGGGACAGCCAAGAACACAT+AGG 0.690788 6_3:-30408483 Msa0947520:CDS
TTCAAGGGAAGACCTTACCA+AGG 0.690942 6_3:-30404859 Msa0947520:CDS
ATACACATCATCTAATGACG+GGG 0.694297 6_3:+30403780 None:intergenic
AAGTTGCATAAAGATGTGCA+GGG 0.717646 6_3:+30405430 None:intergenic
CTGATATTGATATTATGATG+GGG 0.726376 6_3:-30407538 Msa0947520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATAAATAAAAGTTAAAG+TGG + chr6_3:30413265-30413284 None:intergenic 15.0%
!! AAATGCATCTAGTATATTTA+GGG + chr6_3:30413521-30413540 None:intergenic 20.0%
!! TAAATGCATCTAGTATATTT+AGG + chr6_3:30413522-30413541 None:intergenic 20.0%
!! ATATATGCAAAAAATTCCAA+AGG - chr6_3:30413704-30413723 Msa0947520:intron 20.0%
!!! TCCATATAATCTTTTGTTTT+CGG - chr6_3:30414153-30414172 Msa0947520:five_prime_UTR 20.0%
!! TGAAAAAGCACAGAAAAAAA+AGG + chr6_3:30413009-30413028 None:intergenic 25.0%
!!! TTTTTTTTCTGTGCTTTTTC+AGG - chr6_3:30413008-30413027 Msa0947520:intron 25.0%
!! TTTTGAATCTCATCTCATTA+AGG - chr6_3:30413145-30413164 Msa0947520:intron 25.0%
! TTGCGTAATTATTTGTCAAT+GGG - chr6_3:30413225-30413244 Msa0947520:intron 25.0%
!! TAATACTATTAGTCTGTCTT+TGG - chr6_3:30413569-30413588 Msa0947520:intron 25.0%
! TGGAGATGAAAAATCAATAT+TGG - chr6_3:30413589-30413608 Msa0947520:intron 25.0%
! ATGAATACGAAGATTATTGA+AGG - chr6_3:30414015-30414034 Msa0947520:CDS 25.0%
! TCCGAAAACAAAAGATTATA+TGG + chr6_3:30414157-30414176 None:intergenic 25.0%
CATTGACAAATAATTACGCA+AGG + chr6_3:30413226-30413245 None:intergenic 30.0%
CTTGCGTAATTATTTGTCAA+TGG - chr6_3:30413224-30413243 Msa0947520:intron 30.0%
!!! GGACAATTTTTTTCCTAAAG+GGG + chr6_3:30413500-30413519 None:intergenic 30.0%
!!! GGGACAATTTTTTTCCTAAA+GGG + chr6_3:30413501-30413520 None:intergenic 30.0%
!!! AGGGACAATTTTTTTCCTAA+AGG + chr6_3:30413502-30413521 None:intergenic 30.0%
AGTTACCACATAAATATTCG+TGG + chr6_3:30413844-30413863 None:intergenic 30.0%
ATAGAGCTGTAGTTATTGTA+AGG - chr6_3:30414038-30414057 Msa0947520:CDS 30.0%
TATACACATCATCTAATGAC+GGG + chr6_3:30414190-30414209 None:intergenic 30.0%
CTATACACATCATCTAATGA+CGG + chr6_3:30414191-30414210 None:intergenic 30.0%
CATATCAGCTTCTCATTCAA+GGG - chr6_3:30413092-30413111 Msa0947520:intron 35.0%
ATTCAAAATACACACCTGCA+AGG + chr6_3:30413133-30413152 None:intergenic 35.0%
! ATATTTTCTATTCTACCCCC+TGG - chr6_3:30413449-30413468 Msa0947520:intron 35.0%
TTAGGTAGTACAATCTACCA+GGG + chr6_3:30413469-30413488 None:intergenic 35.0%
ATTAGGTAGTACAATCTACC+AGG + chr6_3:30413470-30413489 None:intergenic 35.0%
CCTAAAGGGGACTTATAATT+AGG + chr6_3:30413487-30413506 None:intergenic 35.0%
CCTAATTATAAGTCCCCTTT+AGG - chr6_3:30413484-30413503 Msa0947520:intron 35.0%
TTGGACACTTCTATACACAA+AGG - chr6_3:30413608-30413627 Msa0947520:intron 35.0%
TCACTGTTTATAAGCTCCTT+TGG + chr6_3:30413723-30413742 None:intergenic 35.0%
AAGGAGCTTATAAACAGTGA+TGG - chr6_3:30413723-30413742 Msa0947520:intron 35.0%
AAGACATCCTTCAAGGATAT+TGG + chr6_3:30413806-30413825 None:intergenic 35.0%
ACTCAAAAAGACATCCTTCA+AGG + chr6_3:30413813-30413832 None:intergenic 35.0%
!! GTAAGGCATTTTTGAATCCA+TGG - chr6_3:30414055-30414074 Msa0947520:CDS 35.0%
! CAGTTAGTTTGAAATCACCA+TGG + chr6_3:30414075-30414094 None:intergenic 35.0%
CATGGTGATTTCAAACTAAC+TGG - chr6_3:30414073-30414092 Msa0947520:exon 35.0%
ATACACATCATCTAATGACG+GGG + chr6_3:30414189-30414208 None:intergenic 35.0%
TGGCTGGAGATGATTCAAAT+GGG + chr6_3:30403695-30403714 None:intergenic 40.0%
TTGGCTGGAGATGATTCAAA+TGG + chr6_3:30403696-30403715 None:intergenic 40.0%
TTAACTGAGATCCGTGATGT+AGG + chr6_3:30412980-30412999 None:intergenic 40.0%
GCATATCAGCTTCTCATTCA+AGG - chr6_3:30413091-30413110 Msa0947520:intron 40.0%
TAGGTAGTACAATCTACCAG+GGG + chr6_3:30413468-30413487 None:intergenic 40.0%
GTTTGTGCCAATATCCTTGA+AGG - chr6_3:30413796-30413815 Msa0947520:intron 40.0%
CGCTTCCACGAATATTTATG+TGG - chr6_3:30413836-30413855 Msa0947520:intron 40.0%
TGTTTGTGCTTTCCTTTCGT+AGG - chr6_3:30413869-30413888 Msa0947520:intron 40.0%
CACTGCTAATAACCTACGAA+AGG + chr6_3:30413884-30413903 None:intergenic 40.0%
TCGTAGGTTATTAGCAGTGT+AGG - chr6_3:30413885-30413904 Msa0947520:intron 40.0%
AGCAGTGTAGGTGATCTAAT+TGG - chr6_3:30413897-30413916 Msa0947520:intron 40.0%
!! TCTTGTTGTTGTTGCTTCGT+TGG + chr6_3:30413945-30413964 None:intergenic 40.0%
ACGAAGCAACAACAACAAGA+TGG - chr6_3:30413945-30413964 Msa0947520:intron 40.0%
TTCAAGGGAAGACCTTACCA+AGG - chr6_3:30413107-30413126 Msa0947520:intron 45.0%
AGGTAGTACAATCTACCAGG+GGG + chr6_3:30413467-30413486 None:intergenic 45.0%
TGTTGCCATCTTCGAAAGTG+AGG - chr6_3:30414108-30414127 Msa0947520:five_prime_UTR 45.0%
CAAGACCTCACTTTCGAAGA+TGG + chr6_3:30414116-30414135 None:intergenic 45.0%
CATCTTCGAAAGTGAGGTCT+TGG - chr6_3:30414114-30414133 Msa0947520:five_prime_UTR 45.0%
TGCTCTAGCCAGTAGCAATG+GGG + chr6_3:30413064-30413083 None:intergenic 50.0%
GTGCTCTAGCCAGTAGCAAT+GGG + chr6_3:30413065-30413084 None:intergenic 50.0%
AATACACACCTGCAAGGCCT+TGG + chr6_3:30413127-30413146 None:intergenic 50.0%
!! GTTGCTTCGTTGGTTCAGCA+GGG + chr6_3:30413935-30413954 None:intergenic 50.0%
!! TGTTGCTTCGTTGGTTCAGC+AGG + chr6_3:30413936-30413955 None:intergenic 50.0%
TCCAGCAACCCCATTGCTAC+TGG - chr6_3:30413053-30413072 Msa0947520:intron 55.0%
CGTGCTCTAGCCAGTAGCAA+TGG + chr6_3:30413066-30413085 None:intergenic 55.0%
AGACCTTACCAAGGCCTTGC+AGG - chr6_3:30413116-30413135 Msa0947520:intron 55.0%
ACACCTGCAAGGCCTTGGTA+AGG + chr6_3:30413122-30413141 None:intergenic 55.0%
GCCAGTAGCAATGGGGTTGC+TGG + chr6_3:30413057-30413076 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 30403683 30414305 30403683 ID=Msa0947520;Name=Msa0947520
chr6_3 mRNA 30403683 30414305 30403683 ID=Msa0947520-mRNA-1;Parent=Msa0947520;Name=Msa0947520-mRNA-1;_AED=0.04;_eAED=0.04;_QI=219|1|1|1|0.90|1|12|316|490
chr6_3 exon 30403683 30404097 30403683 ID=Msa0947520-mRNA-1:exon:8053;Parent=Msa0947520-mRNA-1
chr6_3 exon 30404851 30404958 30404851 ID=Msa0947520-mRNA-1:exon:8052;Parent=Msa0947520-mRNA-1
chr6_3 exon 30405058 30405224 30405058 ID=Msa0947520-mRNA-1:exon:8051;Parent=Msa0947520-mRNA-1
chr6_3 exon 30405355 30405481 30405355 ID=Msa0947520-mRNA-1:exon:8050;Parent=Msa0947520-mRNA-1
chr6_3 exon 30407487 30407648 30407487 ID=Msa0947520-mRNA-1:exon:8049;Parent=Msa0947520-mRNA-1
chr6_3 exon 30408384 30408547 30408384 ID=Msa0947520-mRNA-1:exon:8048;Parent=Msa0947520-mRNA-1
chr6_3 exon 30409182 30409275 30409182 ID=Msa0947520-mRNA-1:exon:8047;Parent=Msa0947520-mRNA-1
chr6_3 exon 30409361 30409485 30409361 ID=Msa0947520-mRNA-1:exon:8046;Parent=Msa0947520-mRNA-1
chr6_3 exon 30409586 30409731 30409586 ID=Msa0947520-mRNA-1:exon:8045;Parent=Msa0947520-mRNA-1
chr6_3 exon 30409919 30410007 30409919 ID=Msa0947520-mRNA-1:exon:8044;Parent=Msa0947520-mRNA-1
chr6_3 exon 30413649 30413714 30413649 ID=Msa0947520-mRNA-1:exon:8043;Parent=Msa0947520-mRNA-1
chr6_3 exon 30413961 30414305 30413961 ID=Msa0947520-mRNA-1:exon:8042;Parent=Msa0947520-mRNA-1
chr6_3 five_prime_UTR 30414087 30414305 30414087 ID=Msa0947520-mRNA-1:five_prime_utr;Parent=Msa0947520-mRNA-1
chr6_3 CDS 30413961 30414086 30413961 ID=Msa0947520-mRNA-1:cds;Parent=Msa0947520-mRNA-1
chr6_3 CDS 30413649 30413714 30413649 ID=Msa0947520-mRNA-1:cds;Parent=Msa0947520-mRNA-1
chr6_3 CDS 30409919 30410007 30409919 ID=Msa0947520-mRNA-1:cds;Parent=Msa0947520-mRNA-1
chr6_3 CDS 30409586 30409731 30409586 ID=Msa0947520-mRNA-1:cds;Parent=Msa0947520-mRNA-1
chr6_3 CDS 30409361 30409485 30409361 ID=Msa0947520-mRNA-1:cds;Parent=Msa0947520-mRNA-1
chr6_3 CDS 30409182 30409275 30409182 ID=Msa0947520-mRNA-1:cds;Parent=Msa0947520-mRNA-1
chr6_3 CDS 30408384 30408547 30408384 ID=Msa0947520-mRNA-1:cds;Parent=Msa0947520-mRNA-1
chr6_3 CDS 30407487 30407648 30407487 ID=Msa0947520-mRNA-1:cds;Parent=Msa0947520-mRNA-1
chr6_3 CDS 30405355 30405481 30405355 ID=Msa0947520-mRNA-1:cds;Parent=Msa0947520-mRNA-1
chr6_3 CDS 30405058 30405224 30405058 ID=Msa0947520-mRNA-1:cds;Parent=Msa0947520-mRNA-1
chr6_3 CDS 30404851 30404958 30404851 ID=Msa0947520-mRNA-1:cds;Parent=Msa0947520-mRNA-1
chr6_3 CDS 30403999 30404097 30403999 ID=Msa0947520-mRNA-1:cds;Parent=Msa0947520-mRNA-1
chr6_3 three_prime_UTR 30403683 30403998 30403683 ID=Msa0947520-mRNA-1:three_prime_utr;Parent=Msa0947520-mRNA-1
Gene Sequence

>Msa0947520

ATGATAGCGATTCCGTATCTCACTGCACTCACAACCTATTTCAGTTACGGTTTGCTCTTCGCTTTCGGTCAATTTCGTGATTTCTTCCGAAAAATCTTTGACTGGTGCAGTTCCAATAATCTTCAGGGTTATGCACCGATCTGTTTAGGACTTGAAGATTTTTATATTCGTAGATTATATCTTCGGATTCAGGACTGTTTTGGGAGACCAATATCAAGTGCTCCTGATGCTTGGTTTGATGTAGTCGAACGCTACTCCAATGACAATAACAAAACACTAAAACGAACCAGTAAAGTAAGTCGATGTCTTAACTTGGGATCATATAACTATCTTGGTTTTGCTGCGGCTGATGAATACTGTACTCCTCGAGTGATTGATACATTGAAGAAGTATTCTCCAAGCACTTGCAGTACCCGGGTGGATGGAGGCACGACAGCACTTCACAATGAATTGGAGGAGTGTGTTGCTAGTTTTGTTAAAAAGCCAGCTGCTTTGGTTTTTGGAATGGGCTACGTGACAAACTCTGCTATTCTTCCGGTCTTGATGGGGAAGGGAAGTTTGATTATTAGTGATTCACTGAACCACAACTCAATTGTTAATGGTGCGCGGGGATCAGGAGCAACTATTCGTGTTTTTCAACACAACGTGCCAGCACATCTAGAAGAAGTGTTACGAGAACAAATTGCTGAGGGACAGCCAAGAACACATAGGCCCTGGAAGAAGATAATGGTTATTGTGGAGGGGATATACAGCATGGAAGGAGAGCTTTGCAAACTTCCAGAGGTCATAGCTATATGCAAAAAATATAAGGCATATACATATTTGGATGAAGCACACAGCATTGGAGCTGTGGGCAAGACAGGAAGGGGTGTTTGTGAGCTCTTGGGTGTGGATACTGCTGATATTGATATTATGATGGGGACATTCACCAAATCATTTGGATCATGTGGAGGTTATATTGCAGGATCTAAGGAGCTTATTGAATATTTGAAGTACACTTGCCCTGCACATCTTTATGCAACTTCAATTTCACCCCCAGCTGCACAACAAATAATATCTTCCATAAAAGTTATTCTTGGCGAAGATGGTTCAAGTCGAGGTGCCCAGAAACTTGCAAAGATCCGAGAAAATAGCAATTTTTTCAGGTCAGAATTGCAGAAGATGGGATTTGAAGTTCTTGGGGATAATGATTCTCCTGTAATGCCAATCATGCTTTACAACCCAGCCAAAATCCCTGCCTTCTCAAGGGAGTGCCTCAGGCAGAATGTTGCTGTTGTAACTGTTGCATTTCCAGCAACCCCATTGCTACTGGCTAGAGCACGCATATGCATATCAGCTTCTCATTCAAGGGAAGACCTTACCAAGGCCTTGCAGGTTATTAGCAGTGTAGGTGATCTAATTGGCATAAAATACTTCCCTGCTGAACCAACGAAGCAACAACAACAAGATGGTAAAACTGTGAAGTTCGAGTGA

Protein sequence

>Msa0947520

MIAIPYLTALTTYFSYGLLFAFGQFRDFFRKIFDWCSSNNLQGYAPICLGLEDFYIRRLYLRIQDCFGRPISSAPDAWFDVVERYSNDNNKTLKRTSKVSRCLNLGSYNYLGFAAADEYCTPRVIDTLKKYSPSTCSTRVDGGTTALHNELEECVASFVKKPAALVFGMGYVTNSAILPVLMGKGSLIISDSLNHNSIVNGARGSGATIRVFQHNVPAHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKLPEVIAICKKYKAYTYLDEAHSIGAVGKTGRGVCELLGVDTADIDIMMGTFTKSFGSCGGYIAGSKELIEYLKYTCPAHLYATSISPPAAQQIISSIKVILGEDGSSRGAQKLAKIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNVAVVTVAFPATPLLLARARICISASHSREDLTKALQVISSVGDLIGIKYFPAEPTKQQQQDGKTVKFE*