AlfalfaGEDB | Msa1040390

M. sativa cultivar zhongmu-4 / Msa1040390

KEGG: K16911
GO: GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010467 GO:0010501 GO:0016020 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034641 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363
PFAM: PF00270.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1040390	XP_024625862.1	98.805	753	9	0	1	753	1	753	0.0	1514

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1040390	sp\|A0A1D6LAB7\|RH3B_MAIZE	68.994	716	179	7	63	748	41	743	0.0	926

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1040390	Q2HUZ8	98.805	753	9	0	1	753	1	753	0.0	1514

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000780	Msa1040390	0.809416	1.912418e-50	-8.615850e-47
Msa0001420	Msa1040390	0.820584	6.349461e-53	-8.615850e-47
Msa0001460	Msa1040390	0.828611	8.167380e-55	-8.615850e-47
Msa0001510	Msa1040390	0.826888	2.118921e-54	-8.615850e-47
Msa0001540	Msa1040390	0.866708	2.340175e-65	-8.615850e-47
Msa0002060	Msa1040390	0.827806	1.276468e-54	-8.615850e-47
Msa0004340	Msa1040390	0.801846	7.426337e-49	-8.615850e-47
Msa0005160	Msa1040390	0.811401	7.131890e-51	-8.615850e-47
Msa0005190	Msa1040390	0.832044	1.183239e-55	-8.615850e-47
Msa0005690	Msa1040390	0.823313	1.481700e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1040390	MtrunA17_Chr7g0271121	89.110	753	27	4	1	753	53	750	0.0	1325
Msa1040390	MtrunA17_Chr1g0193491	68.463	501	133	8	16	501	17	507	0.0	652
Msa1040390	MtrunA17_Chr5g0442191	62.690	394	141	3	85	477	59	447	2.06e-168	498
Msa1040390	MtrunA17_Chr3g0095031	59.813	428	162	4	60	486	47	465	6.50e-167	493
Msa1040390	MtrunA17_Chr6g0475251	40.631	539	297	12	110	636	104	631	1.21e-110	351
Msa1040390	MtrunA17_Chr1g0204391	38.577	534	288	11	110	617	45	564	3.58e-108	342
Msa1040390	MtrunA17_Chr3g0121351	38.571	420	231	11	71	470	108	520	4.55e-75	255
Msa1040390	MtrunA17_Chr2g0330401	38.547	358	213	4	115	469	102	455	9.67e-75	251
Msa1040390	MtrunA17_Chr1g0176041	37.709	419	224	12	77	469	120	527	1.07e-73	251
Msa1040390	MtrunA17_Chr6g0449911	38.439	346	207	3	115	458	171	512	2.39e-71	247

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1040390	AT5G26742.1	72.879	660	161	6	1	653	1	649	0.0	918
Msa1040390	AT5G26742.2	72.879	660	161	6	1	653	1	649	0.0	918
Msa1040390	AT5G26742.3	81.418	522	91	2	136	653	37	556	0.0	848
Msa1040390	AT3G22330.1	62.597	385	142	1	102	486	98	480	2.11e-165	491
Msa1040390	AT3G22310.2	61.214	379	145	1	108	486	116	492	9.80e-163	484
Msa1040390	AT3G22310.1	61.214	379	145	1	108	486	116	492	1.59e-162	484
Msa1040390	AT5G62190.1	40.625	544	299	13	110	640	98	630	1.33e-111	354
Msa1040390	AT3G01540.4	36.524	397	236	3	64	458	124	506	2.80e-74	253
Msa1040390	AT3G01540.2	36.524	397	236	3	64	458	124	506	2.80e-74	253
Msa1040390	AT3G01540.3	36.524	397	236	3	64	458	124	506	2.80e-74	253

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Find 217 sgRNAs with CRISPR-Local

Find 464 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGTTTGTATTTATGG+AGG	0.565125	7_1:+77744460	Msa1040390:CDS
AAAAGAGATACTAAAGGATA+AGG	0.375120	7_1:-77742949	None:intergenic
AAAGAAGCAGTCGGGATGAT+TGG	0.437118	7_1:+77748464	Msa1040390:CDS
AAAGAGATACTAAAGGATAA+GGG	0.348693	7_1:-77742948	None:intergenic
AACTCTTTAGCAATGTCCTC+TGG	0.466810	7_1:-77748016	None:intergenic
AACTGCCCTTGCAGCTGCAC+TGG	0.414599	7_1:+77746753	Msa1040390:CDS
AACTTCCCATAGAAATCACT+TGG	0.534047	7_1:-77748277	None:intergenic
AAGAAGAAAAGCTTGCTGAA+GGG	0.582785	7_1:+77745077	Msa1040390:CDS
AAGAATGGTTCGCTTTGAAG+TGG	0.538212	7_1:-77745128	None:intergenic
AAGAGATACTAAAGGATAAG+GGG	0.575652	7_1:-77742947	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGATACTAAAGGATAAG+GGG	-	chr7_1:77742950-77742969	None:intergenic	30.0%
AGAAGGAAAAGAGATACTAA+AGG	-	chr7_1:77742958-77742977	None:intergenic	30.0%
AGAACGAAGAACCATATAAA+TGG	+	chr7_1:77743015-77743034	Msa1040390:exon	30.0%
AGTGAAGAAGATGAAGAATT+AGG	-	chr7_1:77743235-77743254	None:intergenic	30.0%
TCGTCTAAACCATTAATGAT+AGG	-	chr7_1:77743624-77743643	None:intergenic	30.0%
ATCATTAATGGTTTAGACGA+TGG	+	chr7_1:77743624-77743643	Msa1040390:CDS	30.0%
CATAAAATCATCAACGAATG+AGG	-	chr7_1:77743682-77743701	None:intergenic	30.0%
AATGTGACAGTATCATGTTA+AGG	+	chr7_1:77743716-77743735	Msa1040390:intron	30.0%
ATAAGTTCTCTAACATAGCT+TGG	+	chr7_1:77744074-77744093	Msa1040390:intron	30.0%
TAAGTTCTCTAACATAGCTT+GGG	+	chr7_1:77744075-77744094	Msa1040390:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	77742870	77749032	77742870	ID=Msa1040390;Name=Msa1040390
chr7_1	mRNA	77742870	77749032	77742870	ID=Msa1040390-mRNA-1;Parent=Msa1040390;Name=Msa1040390-mRNA-1;_AED=0.06;_eAED=0.06;_QI=164\|1\|1\|1\|1\|1\|10\|235\|767
chr7_1	exon	77742870	77743438	77742870	ID=Msa1040390-mRNA-1:exon:20523;Parent=Msa1040390-mRNA-1
chr7_1	exon	77743534	77743673	77743534	ID=Msa1040390-mRNA-1:exon:20524;Parent=Msa1040390-mRNA-1
chr7_1	exon	77744372	77744777	77744372	ID=Msa1040390-mRNA-1:exon:20525;Parent=Msa1040390-mRNA-1
chr7_1	exon	77745067	77745165	77745067	ID=Msa1040390-mRNA-1:exon:20526;Parent=Msa1040390-mRNA-1
chr7_1	exon	77745594	77745818	77745594	ID=Msa1040390-mRNA-1:exon:20527;Parent=Msa1040390-mRNA-1
chr7_1	exon	77746457	77746834	77746457	ID=Msa1040390-mRNA-1:exon:20528;Parent=Msa1040390-mRNA-1
chr7_1	exon	77747719	77747862	77747719	ID=Msa1040390-mRNA-1:exon:20529;Parent=Msa1040390-mRNA-1
chr7_1	exon	77747992	77748087	77747992	ID=Msa1040390-mRNA-1:exon:20530;Parent=Msa1040390-mRNA-1
chr7_1	exon	77748250	77748533	77748250	ID=Msa1040390-mRNA-1:exon:20531;Parent=Msa1040390-mRNA-1
chr7_1	exon	77748671	77749032	77748671	ID=Msa1040390-mRNA-1:exon:20532;Parent=Msa1040390-mRNA-1
chr7_1	five_prime_UTR	77742870	77743033	77742870	ID=Msa1040390-mRNA-1:five_prime_utr;Parent=Msa1040390-mRNA-1
chr7_1	CDS	77743034	77743438	77743034	ID=Msa1040390-mRNA-1:cds;Parent=Msa1040390-mRNA-1
chr7_1	CDS	77743534	77743673	77743534	ID=Msa1040390-mRNA-1:cds;Parent=Msa1040390-mRNA-1
chr7_1	CDS	77744372	77744777	77744372	ID=Msa1040390-mRNA-1:cds;Parent=Msa1040390-mRNA-1
chr7_1	CDS	77745067	77745165	77745067	ID=Msa1040390-mRNA-1:cds;Parent=Msa1040390-mRNA-1
chr7_1	CDS	77745594	77745818	77745594	ID=Msa1040390-mRNA-1:cds;Parent=Msa1040390-mRNA-1
chr7_1	CDS	77746457	77746834	77746457	ID=Msa1040390-mRNA-1:cds;Parent=Msa1040390-mRNA-1
chr7_1	CDS	77747719	77747862	77747719	ID=Msa1040390-mRNA-1:cds;Parent=Msa1040390-mRNA-1
chr7_1	CDS	77747992	77748087	77747992	ID=Msa1040390-mRNA-1:cds;Parent=Msa1040390-mRNA-1
chr7_1	CDS	77748250	77748533	77748250	ID=Msa1040390-mRNA-1:cds;Parent=Msa1040390-mRNA-1
chr7_1	CDS	77748671	77748797	77748671	ID=Msa1040390-mRNA-1:cds;Parent=Msa1040390-mRNA-1
chr7_1	three_prime_UTR	77748798	77749032	77748798	ID=Msa1040390-mRNA-1:three_prime_utr;Parent=Msa1040390-mRNA-1

Gene Sequence

>Msa1040390

ATGGCTTCCATAACCGCAATCGGTGCTTCCACTGCATGCAAACTTCCCTCTCTCGAACTCTACAAAAAACACAAACTAACTTCCATTTCCACTTCCTCCGTTAAATTCCACTTTTCCGACGGTAACAAATCCCGGCACATCAACCGTCTCGCCAATTTCAACTCCTCTGATAGGTTTCTTCCTTCCGCCGTCGCTACTCCTAATTCTTCATCTTCTTCACTTCTCAGTGACGAAGCATTTAAAGGATTAGGCTCTGGCTTCGACGGAGAATCTGAAGACGAAGATTTTCCGTCACGAACTACTTCTATTGACGCTGATGAACTCGACATTTCTAAACTCGATTTGCCTTCGCAGCTTGTTGATTCGCTACGTGACCGTGGGATTACTCAGCTTTTTCCTATTCAGAGAGCGGTGTTAGTACCTGCACTAGAAGGTAGAGATATTATTGCTCGTGCAAAGACTGGAACAGGGAAAACACTGGCTTTTGGAATTCCTATCATTAATGGTTTAGACGATGGTCAAGATTCAGGTCCTTACAGTCACAGGCGTCTTCCTAGAGCTTTGGTACTTGCACCTACCAGGGAGTTAGCAAAGCAAGTGGAGAAGGAGATAAAAGAATCTGCGCCTTATCTCAAAACTGTTTGTATTTATGGAGGTGTTTCTTATGTTACTCAACAGAGTGCACTTTCGCGTGGTGTTGATGTGGTTGTTGGAACGCCTGGTAGGCTGATCGACCTCATCAACGGGAACACACTCAAGTTGAGTGAAGTTGAGTATTTGGTACTCGACGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAAGAGGATGTAGAAGTCATTTTGGAAAAGCTTCCAGCAAAGAGACAGAGCATGCTTTTTTCTGCAACCATGCCTAGTTGGGTGAAGAAATTGGCCAGGAAATACTTGAACAATCCATTGACAATTGATTTGGTTGGTGATGAAGAAGAAAAGCTTGCTGAAGGGATAAAACTATATGCTATATCGGCCACTTCCACTTCAAAGCGAACCATTCTTTCTGATCTTATTACCGTTTATGCAAAGGGTGGGAAGACTATAGTTTTTACGCAGACAAAAAGAGATGCTGATGAAGTATCATTGGCATTAACAAATAGTATCACTTCTGAAGCACTGCATGGTGATATATCTCAGCACCAGAGAGAAAGAACATTGAATGGTTTCAGACAAGGAAAATTTACAGTGCTTGTTGCAACTGATGTTGCATCTCGTGGACTTGATATTCCCAATGTTGATTTGATTATCCATTATGAACTTCCCAATGATCCCGAGACTTTTGTACATCGCTCTGGCCGTACTGGCCGTGCAGGAAAGCTAGGTACTGCCATTCTGATGTTCACAGGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCGTGATGTAGGTTGTAAATTTGAATTTGTTAACGCGCCGTCTGTGGAAGATGTTTTGGAGTCATCTGCTGAGCAAGTTGTTGTCACGCTTAATGGAGTTCATCCAGAGTCTATTGCATTTTTCACCCCAACTGCACAGAAACTGATTGAAGAAAAAGGAACAACTGCCCTTGCAGCTGCACTGGCACAGCTGAGTGGATTCTCCCAACCTCCGTCTTCCCGGTCTCTTATCACCCATGAACAGGGATGGGTTACATTGCAATTAACTAGAGATTCAGAAAATTCTCAAAGATATTTTTCAGCAAGATCAGTCACTGGGTTTCTTTCTGATGTATATTCCAAAGCTGCTGACGAAGTTGGAAAAGTTCATTTAATTGCGGATGAAAGGGTTCAAGGAGCCGTTTTTGATCTTCCAGAGGACATTGCTAAAGAGTTACTTGACAAGGACATACCAGCTGGAAACACTATTTCCAAAGTCACCAAGTTACCTCCTTTGCAAGATGATGGGCCTCCAAGTGATTTCTATGGGAAGTTTTCCGACAGAGAACGAAGTAACCGAAGAGGAGGTTCTAGGGATGGGAGAGGTTTTAGATCCTCGCGGGGATGGGATGGAGGTCGAGGCTCTGATGATGATTTTGGTGACTCGTCTAGGAGGGGTGGGAGAAGTTATAAATCTGGCAATAGCTGGTCCAAACCAGAAAGAAGCAGTCGGGATGATTGGTTAATTGGAGGCAGACAATCGAGCAGATCTTCTTCGTCACCGAACAGAAGCTTTGCAGGGACCTGTTTTAATTGTGGGGAATCTGGGCATCGAGCGTCGGACTGTCCAAACAAGCGAGGCGGCTTTTTTAAGCCCTCCCATCAATTTACTTTTGGGCATTGCTTTGTCCAATGA

Protein sequence

>Msa1040390

MASITAIGASTACKLPSLELYKKHKLTSISTSSVKFHFSDGNKSRHINRLANFNSSDRFLPSAVATPNSSSSSLLSDEAFKGLGSGFDGESEDEDFPSRTTSIDADELDISKLDLPSQLVDSLRDRGITQLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIINGLDDGQDSGPYSHRRLPRALVLAPTRELAKQVEKEIKESAPYLKTVCIYGGVSYVTQQSALSRGVDVVVGTPGRLIDLINGNTLKLSEVEYLVLDEADQMLAVGFEEDVEVILEKLPAKRQSMLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAISATSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKLGTAILMFTGSQRRTVRSLERDVGCKFEFVNAPSVEDVLESSAEQVVVTLNGVHPESIAFFTPTAQKLIEEKGTTALAAALAQLSGFSQPPSSRSLITHEQGWVTLQLTRDSENSQRYFSARSVTGFLSDVYSKAADEVGKVHLIADERVQGAVFDLPEDIAKELLDKDIPAGNTISKVTKLPPLQDDGPPSDFYGKFSDRERSNRRGGSRDGRGFRSSRGWDGGRGSDDDFGDSSRRGGRSYKSGNSWSKPERSSRDDWLIGGRQSSRSSSSPNRSFAGTCFNCGESGHRASDCPNKRGGFFKPSHQFTFGHCFVQ*