AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0386920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0386920 MtrunA17_Chr3g0145071 97.241 290 7 1 29 317 764 1053 0.0 575
Msa0386920 MtrunA17_Chr4g0035661 78.082 292 61 3 29 317 756 1047 1.06e-141 427
Msa0386920 MtrunA17_Chr7g0258991 43.617 188 82 4 30 216 825 989 2.69e-27 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0386920 AT4G39050.1 67.119 295 80 7 29 317 747 1030 3.63e-118 365
Msa0386920 AT2G21380.2 61.056 303 89 7 29 317 746 1033 3.52e-91 293
Msa0386920 AT2G21380.1 61.056 303 89 7 29 317 746 1033 3.52e-91 293
Msa0386920 AT5G06670.2 39.815 216 104 4 4 216 766 958 6.54e-28 114
Msa0386920 AT5G06670.3 39.815 216 104 4 4 216 766 958 6.54e-28 114
Msa0386920 AT5G06670.6 39.815 216 104 4 4 216 775 967 6.81e-28 114
Msa0386920 AT5G06670.1 39.815 216 104 4 4 216 775 967 6.81e-28 114
Msa0386920 AT3G12020.4 42.541 181 86 4 36 216 781 943 1.86e-24 104
Msa0386920 AT3G12020.1 42.541 181 86 4 36 216 781 943 1.86e-24 104
Msa0386920 AT3G12020.3 42.541 181 86 4 36 216 860 1022 2.75e-24 103
Msa0386920 AT3G12020.2 42.541 181 86 4 36 216 860 1022 2.75e-24 103
Msa0386920 AT1G21730.1 60.606 66 26 0 29 94 825 890 7.99e-12 66.6

Find 97 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTATTTCCCTCAGATTCT+TGG 0.231449 3_1:+90763667 Msa0386920:three_prime_UTR
CCTCCGATAGTTTCTGATTC+TGG 0.237375 3_1:-90762407 None:intergenic
CCCCTGGGGAATTGTATAAT+AGG 0.259929 3_1:+90764048 Msa0386920:three_prime_UTR
AATTGATGTTACTGAATTAC+AGG 0.262908 3_1:+90759945 Msa0386920:CDS
AGCCGTGCTAATGACCTTTC+AGG 0.295765 3_1:+90762645 Msa0386920:CDS
AGCAGCAGAGGCCAATTCTT+TGG 0.306311 3_1:-90762442 None:intergenic
CCCTGGGGAATTGTATAATA+GGG 0.334400 3_1:+90764049 Msa0386920:three_prime_UTR
TACTTTACAAACATGGGAAT+TGG 0.339430 3_1:-90763567 None:intergenic
GGTTAACACCATTAACCATT+TGG 0.352631 3_1:-90762578 None:intergenic
ATGGCGTCCATGAGAGAAAT+TGG 0.353248 3_1:+90759899 Msa0386920:CDS
AGCAAAGACCTCTGTTAATA+AGG 0.356881 3_1:-90763824 None:intergenic
TGCTGTAGAACTGAAGAATT+TGG 0.357646 3_1:+90762464 Msa0386920:CDS
TTCATTGCAAAATGCAAAGT+TGG 0.364024 3_1:+90762506 Msa0386920:CDS
CTTTCAAACGGTCTTACATT+TGG 0.365106 3_1:-90763995 None:intergenic
AATTTGTGGAAGAGGAGTTC+AGG 0.372307 3_1:+90762781 Msa0386920:CDS
ATGTACAAAATTTATTCATA+TGG 0.373962 3_1:+90759880 Msa0386920:CDS
GGAAGAGGAGTTCAGGAAAA+AGG 0.382361 3_1:+90762788 Msa0386920:CDS
AAGTACAGTGATGGAAGATC+TGG 0.387315 3_1:+90762603 Msa0386920:CDS
AGCTTCTTATGCCAAAGAAT+TGG 0.392728 3_1:+90762431 Msa0386920:CDS
GTAATATTTGTGCGACATAT+AGG 0.402401 3_1:-90763773 None:intergenic
TCTCTCTAAGGAGCAGCATC+TGG 0.405965 3_1:+90762986 Msa0386920:CDS
ACAACCAGGGGTTCTTCCTT+AGG 0.409514 3_1:-90763035 None:intergenic
ATGGAAGATCTGGGAGGAAG+GGG 0.410171 3_1:+90762613 Msa0386920:CDS
ATCTTCCATCACTGTACTTA+CGG 0.419812 3_1:-90762599 None:intergenic
GTCTTGATGCTGATGATTTG+AGG 0.421732 3_1:+90762697 Msa0386920:CDS
GAAACAGCGAGAGGCTGCTC+TGG 0.432567 3_1:+90762737 Msa0386920:CDS
GCTAATGACCTTTCAGGAGC+TGG 0.439603 3_1:+90762651 Msa0386920:CDS
GTTGCTGTCCAAATGGTTAA+TGG 0.440269 3_1:+90762570 Msa0386920:CDS
TGAGAAAGAATTTGTGGAAG+AGG 0.440932 3_1:+90762773 Msa0386920:CDS
CTCCCGTGTTGCTGTCCAAA+TGG 0.445969 3_1:+90762563 Msa0386920:CDS
CCCCTATTATACAATTCCCC+AGG 0.459340 3_1:-90764050 None:intergenic
GTATAATAGGGGAAAACAAA+GGG 0.466236 3_1:+90764061 Msa0386920:three_prime_UTR
TGATGGAAGATCTGGGAGGA+AGG 0.475358 3_1:+90762611 Msa0386920:CDS
CAGCAACACGGGAGTTGGCC+AGG 0.475575 3_1:-90762554 None:intergenic
TGATTTGAGGCTGGAACTGC+AGG 0.482632 3_1:+90762710 Msa0386920:CDS
AGAACGATTTAGCTAATATG+TGG 0.485860 3_1:+90762844 Msa0386920:CDS
GACGGGGCTGAAAACATAAA+CGG 0.490361 3_1:+90762933 Msa0386920:CDS
TGATGCTGATGATTTGAGGC+TGG 0.491948 3_1:+90762701 Msa0386920:CDS
CAAAACATACTTTACAAACA+TGG 0.503693 3_1:-90763574 None:intergenic
CAAGAAAAGAGAAGAAGCCT+TGG 0.505328 3_1:+90762821 Msa0386920:CDS
TTCAGTAACATCAATTTCAA+AGG 0.508226 3_1:-90759938 None:intergenic
TTACCTTGAGGCGCACAACC+AGG 0.511586 3_1:-90763049 None:intergenic
ATATTGTTGTACCTTTCAAA+CGG 0.511630 3_1:-90764007 None:intergenic
CACTTGTCAGAAGACAATAG+TGG 0.512848 3_1:+90762375 Msa0386920:CDS
AAAACATACTTTACAAACAT+GGG 0.513022 3_1:-90763573 None:intergenic
GATGGAAGATCTGGGAGGAA+GGG 0.514942 3_1:+90762612 Msa0386920:CDS
TCATACACCAATTTCTCTCA+TGG 0.516699 3_1:-90759906 None:intergenic
GGCACGTATGCAAGAGATGA+AGG 0.517868 3_1:+90763511 Msa0386920:intron
GAAGATCTGGGAGGAAGGGG+AGG 0.525368 3_1:+90762616 Msa0386920:CDS
GTAGAACTGAAGAATTTGGC+TGG 0.530661 3_1:+90762468 Msa0386920:CDS
TCCTTAGGAATTTCACCATG+TGG 0.532712 3_1:-90763020 None:intergenic
CCCTATTATACAATTCCCCA+GGG 0.534242 3_1:-90764049 None:intergenic
AATTGGCATCACCGTTTCCA+AGG 0.534518 3_1:-90763550 None:intergenic
AACCATTTGGACAGCAACAC+GGG 0.537319 3_1:-90762565 None:intergenic
GGAAGAAGAATAGCAGCAGT+TGG 0.538172 3_1:-90763602 None:intergenic
TAGAACTGAAGAATTTGGCT+GGG 0.539396 3_1:+90762469 Msa0386920:CDS
CAAATGTAAGACCGTTTGAA+AGG 0.539756 3_1:+90763996 Msa0386920:three_prime_UTR
TGTATAATAGGGGAAAACAA+AGG 0.540299 3_1:+90764060 Msa0386920:three_prime_UTR
TGAGGCTGGAACTGCAGGCT+AGG 0.543071 3_1:+90762715 Msa0386920:CDS
TTGGACAGCAACACGGGAGT+TGG 0.549305 3_1:-90762559 None:intergenic
TACCTTGAGGCGCACAACCA+GGG 0.552736 3_1:-90763048 None:intergenic
TAGGGGAAAACAAAGGGGAG+TGG 0.556707 3_1:+90764067 Msa0386920:three_prime_UTR
GAATTGCACCCCTAATTGCA+TGG 0.560665 3_1:-90763959 None:intergenic
GAACTCAAGTACCTTGGAAA+CGG 0.561583 3_1:+90763539 Msa0386920:CDS
CATCTAAACCAGCTCCTGAA+AGG 0.565251 3_1:-90762659 None:intergenic
TAGAGAGAAAATTACACTCA+TGG 0.565327 3_1:-90762971 None:intergenic
ACCCCTGGTTGTGCGCCTCA+AGG 0.565656 3_1:+90763046 Msa0386920:CDS
ATTGATGACTGTACGAGACC+TGG 0.569576 3_1:+90762536 Msa0386920:CDS
ACCACATGGTGAAATTCCTA+AGG 0.573063 3_1:+90763019 Msa0386920:CDS
GTTTAGATGACTTTGAGTCA+TGG 0.573119 3_1:+90762673 Msa0386920:CDS
CAGTTCTACAGCAGCAGCAG+AGG 0.578570 3_1:-90762454 None:intergenic
AATTCCTAAGGAAGAACCCC+TGG 0.587182 3_1:+90763031 Msa0386920:CDS
CCTGGGGAATTGTATAATAG+GGG 0.588015 3_1:+90764050 Msa0386920:three_prime_UTR
ACTTGTCAGAAGACAATAGT+GGG 0.588109 3_1:+90762376 Msa0386920:CDS
GTTAACCGTAAGTACAGTGA+TGG 0.589669 3_1:+90762594 Msa0386920:CDS
GTTGTCTGAGAAAGAATTTG+TGG 0.590034 3_1:+90762767 Msa0386920:CDS
AATTGCACCCCTAATTGCAT+GGG 0.594838 3_1:-90763958 None:intergenic
ACCTTGAGGCGCACAACCAG+GGG 0.597767 3_1:-90763047 None:intergenic
TAACCATTTGGACAGCAACA+CGG 0.606102 3_1:-90762566 None:intergenic
TGTCCAGAATCAGAAACTAT+CGG 0.610382 3_1:+90762404 Msa0386920:CDS
AGTACAGTGATGGAAGATCT+GGG 0.610860 3_1:+90762604 Msa0386920:CDS
ATTAGCTAAATCGTTCTCCA+AGG 0.611001 3_1:-90762838 None:intergenic
CTCCTGAAAGGTCATTAGCA+CGG 0.611033 3_1:-90762647 None:intergenic
ATTGTTCATATATACTTCAG+AGG 0.613390 3_1:-90764127 None:intergenic
ACTGCTCTTATACTCAGCAA+AGG 0.616461 3_1:-90764194 None:intergenic
CATCTTGACCTTATTAACAG+AGG 0.617714 3_1:+90763816 Msa0386920:three_prime_UTR
AGAACTGAAGAATTTGGCTG+GGG 0.628593 3_1:+90762470 Msa0386920:CDS
GAACGATTTAGCTAATATGT+GGG 0.633096 3_1:+90762845 Msa0386920:CDS
TATAATAGGGGAAAACAAAG+GGG 0.635306 3_1:+90764062 Msa0386920:three_prime_UTR
GTTCATATATACTTCAGAGG+CGG 0.647256 3_1:-90764124 None:intergenic
ACACTGCAAGAGCAAACAAG+AGG 0.650929 3_1:-90763718 None:intergenic
CTGGATGTATCAAAACCACA+TGG 0.669510 3_1:+90763005 Msa0386920:CDS
CTCAGCAAAGGAATAACCAG+AGG 0.672213 3_1:-90764182 None:intergenic
GCAGGCTAGGAAACAGCGAG+AGG 0.700525 3_1:+90762728 Msa0386920:CDS
CCTATTATACAATTCCCCAG+GGG 0.748175 3_1:-90764048 None:intergenic
CCAGAATCAGAAACTATCGG+AGG 0.750889 3_1:+90762407 Msa0386920:CDS
ACAGTGATGGAAGATCTGGG+AGG 0.837792 3_1:+90762607 Msa0386920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAATTAATTTTTATATT+AGG - chr3_1:90760683-90760702 None:intergenic 0.0%
!! TCAATTAAAAAAAATCTAAT+AGG - chr3_1:90760766-90760785 None:intergenic 10.0%
!!! TTATTGATTCAAAAAAAAAA+AGG + chr3_1:90761370-90761389 Msa0386920:intron 10.0%
!!! GTTAAAATAATAATGTATTT+TGG + chr3_1:90761744-90761763 Msa0386920:intron 10.0%
!! AATGATGTAAAATTATTAAT+AGG + chr3_1:90763879-90763898 Msa0386920:intron 10.0%
!! ATGTACAAAATTTATTCATA+TGG + chr3_1:90759880-90759899 Msa0386920:CDS 15.0%
!!! ATGTGTTTTAAACTAAATTT+CGG - chr3_1:90759982-90760001 None:intergenic 15.0%
!! ATTAATGGAAAAATGAATTA+AGG + chr3_1:90761463-90761482 Msa0386920:intron 15.0%
!!! ATGTTTTTGTGTTATAAATA+GGG + chr3_1:90761998-90762017 Msa0386920:intron 15.0%
!! AACATTGATAAAAAATTTGA+CGG + chr3_1:90762915-90762934 Msa0386920:CDS 15.0%
!!! ATTACTCATATTTTTAAACT+TGG + chr3_1:90763346-90763365 Msa0386920:intron 15.0%
!!! TAATTTTACATCATTTGAAT+AGG - chr3_1:90763874-90763893 None:intergenic 15.0%
!! TTAAAATTATCAATTCGCAT+AGG - chr3_1:90760219-90760238 None:intergenic 20.0%
!!! ATATTAGGTTTTTCAACTAA+GGG - chr3_1:90760668-90760687 None:intergenic 20.0%
!!! TATATTAGGTTTTTCAACTA+AGG - chr3_1:90760669-90760688 None:intergenic 20.0%
!! TACTAACAAAAAAATGATTG+TGG - chr3_1:90760965-90760984 None:intergenic 20.0%
!!! GATGTTTTTGTGTTATAAAT+AGG + chr3_1:90761997-90762016 Msa0386920:intron 20.0%
!! TGTTATAAATAGGGAAATTA+TGG + chr3_1:90762007-90762026 Msa0386920:intron 20.0%
!! GTTATAAATAGGGAAATTAT+GGG + chr3_1:90762008-90762027 Msa0386920:intron 20.0%
!! TATAATTCACACATAAACTA+AGG - chr3_1:90762146-90762165 None:intergenic 20.0%
!!! ACTACCATTAAAATGTATTT+TGG + chr3_1:90762226-90762245 Msa0386920:intron 20.0%
!!! TTTTATCAATGTTTGATTCT+GGG - chr3_1:90762908-90762927 None:intergenic 20.0%
!!! TTTTTATCAATGTTTGATTC+TGG - chr3_1:90762909-90762928 None:intergenic 20.0%
!! ACATTGATAAAAAATTTGAC+GGG + chr3_1:90762916-90762935 Msa0386920:CDS 20.0%
!!! AACTGATTTTCTATATAGAT+TGG + chr3_1:90763120-90763139 Msa0386920:intron 20.0%
!! TTTCTTAATATTCTACCAAT+TGG + chr3_1:90763281-90763300 Msa0386920:intron 20.0%
!!! AGTACTCATATTTTTAAACT+TGG + chr3_1:90763373-90763392 Msa0386920:intron 20.0%
!! AAAACATACTTTACAAACAT+GGG - chr3_1:90763576-90763595 None:intergenic 20.0%
!! AATACTTACAACAAAAATGT+CGG - chr3_1:90763631-90763650 None:intergenic 20.0%
! TTCAGTAACATCAATTTCAA+AGG - chr3_1:90759941-90759960 None:intergenic 25.0%
! AATTGATGTTACTGAATTAC+AGG + chr3_1:90759945-90759964 Msa0386920:CDS 25.0%
!!! ACATTACCACTCTTTTATTT+TGG - chr3_1:90760141-90760160 None:intergenic 25.0%
!!! TTTTCATTCAAAGAAAGTAC+CGG - chr3_1:90760291-90760310 None:intergenic 25.0%
! GCAAGAGAAAAAAGATATTA+TGG - chr3_1:90760454-90760473 None:intergenic 25.0%
!!! AGAAATAGAGTTGATTTGAT+AGG + chr3_1:90760568-90760587 Msa0386920:intron 25.0%
!!! TTTTTCAACTAAGGGTATTT+TGG - chr3_1:90760660-90760679 None:intergenic 25.0%
! TGAAAATTTGTGTTTAGAGA+AGG - chr3_1:90760997-90761016 None:intergenic 25.0%
! TGATTCAAAAAAAAAAAGGC+AGG + chr3_1:90761374-90761393 Msa0386920:intron 25.0%
!!! AATTTTTTTCGCCACTAAAA+AGG + chr3_1:90761411-90761430 Msa0386920:intron 25.0%
!! AATTATGGGATATTTCTGAA+TGG + chr3_1:90762022-90762041 Msa0386920:intron 25.0%
!! TAGTAACTGTCTTTTATTGA+TGG - chr3_1:90762210-90762229 None:intergenic 25.0%
!! GGTACCAAAATACATTTTAA+TGG - chr3_1:90762233-90762252 None:intergenic 25.0%
!! TTTTCAATTTCCTGAAAACA+AGG - chr3_1:90762330-90762349 None:intergenic 25.0%
!!! CTTTTTTTAACTTAGCAACA+AGG - chr3_1:90762872-90762891 None:intergenic 25.0%
! GTTGCTAAGTTAAAAAAAGA+AGG + chr3_1:90762873-90762892 Msa0386920:CDS 25.0%
! CATTGATAAAAAATTTGACG+GGG + chr3_1:90762917-90762936 Msa0386920:CDS 25.0%
!! AATCAGTTCAGAATTTTTCT+AGG - chr3_1:90763108-90763127 None:intergenic 25.0%
! CTTGGAAAATTAGTATAACT+AGG - chr3_1:90763191-90763210 None:intergenic 25.0%
!! CTAGTTATACTAATTTTCCA+AGG + chr3_1:90763189-90763208 Msa0386920:intron 25.0%
! GAAACAATAAACATATCTGA+AGG + chr3_1:90763255-90763274 Msa0386920:intron 25.0%
! CAAAACATACTTTACAAACA+TGG - chr3_1:90763577-90763596 None:intergenic 25.0%
!! TTTTACATCATTTGAATAGG+CGG - chr3_1:90763871-90763890 None:intergenic 25.0%
!!! TTATTTTATCCCATGCAATT+AGG + chr3_1:90763949-90763968 Msa0386920:three_prime_UTR 25.0%
!! TATTTTATCCCATGCAATTA+GGG + chr3_1:90763950-90763969 Msa0386920:three_prime_UTR 25.0%
! ATATTGTTGTACCTTTCAAA+CGG - chr3_1:90764010-90764029 None:intergenic 25.0%
! TGGAGAAAGAATGTAAAAAA+GGG + chr3_1:90764087-90764106 Msa0386920:three_prime_UTR 25.0%
! AAAGAATGTAAAAAAGGGAA+AGG + chr3_1:90764092-90764111 Msa0386920:three_prime_UTR 25.0%
! AAGAATGTAAAAAAGGGAAA+GGG + chr3_1:90764093-90764112 Msa0386920:three_prime_UTR 25.0%
! ATTGTTCATATATACTTCAG+AGG - chr3_1:90764130-90764149 None:intergenic 25.0%
!! GTAATATTTTTCTTGACTCT+TGG + chr3_1:90764215-90764234 Msa0386920:three_prime_UTR 25.0%
! AGAAAATTGTTGTTCACACT+TGG - chr3_1:90760089-90760108 None:intergenic 30.0%
! GTGAACAACAATTTTCTTCT+TGG + chr3_1:90760092-90760111 Msa0386920:intron 30.0%
! AATTTTCTTCTTGGTTAGAG+TGG + chr3_1:90760101-90760120 Msa0386920:intron 30.0%
ATTCGACCAAAATAAAAGAG+TGG + chr3_1:90760132-90760151 Msa0386920:intron 30.0%
ATACAAATTTCCAAACCTTG+AGG + chr3_1:90760310-90760329 Msa0386920:intron 30.0%
GCTTCAATTCAACAGTTAAA+TGG - chr3_1:90760363-90760382 None:intergenic 30.0%
! TTTTCTTAACCATCTTTGCT+GGG - chr3_1:90760385-90760404 None:intergenic 30.0%
! ATTTTCTTAACCATCTTTGC+TGG - chr3_1:90760386-90760405 None:intergenic 30.0%
CTACCATGACAATAAAGTTA+GGG + chr3_1:90760410-90760429 Msa0386920:intron 30.0%
GAAATTGTGAAGAGAGAAAT+TGG + chr3_1:90760515-90760534 Msa0386920:intron 30.0%
!! AGTTGATTTGATAGGTTGTT+TGG + chr3_1:90760576-90760595 Msa0386920:intron 30.0%
TGTATACCATCATGATCTTT+GGG - chr3_1:90760917-90760936 None:intergenic 30.0%
GACATAGGTTAAAAACAAAC+TGG - chr3_1:90761074-90761093 None:intergenic 30.0%
TTTGAGGAAATAGAAGACAT+AGG - chr3_1:90761089-90761108 None:intergenic 30.0%
AAGTTGGCTGTTCAAAAAAA+AGG + chr3_1:90761338-90761357 Msa0386920:intron 30.0%
! CTTGGAATTTTCCTTTTTAG+TGG - chr3_1:90761425-90761444 None:intergenic 30.0%
CACTAAAAAGGAAAATTCCA+AGG + chr3_1:90761423-90761442 Msa0386920:intron 30.0%
GGTTAGAGAAGAAGAAAAAA+AGG + chr3_1:90761511-90761530 Msa0386920:intron 30.0%
! AGAAGAAGAAAAAAAGGTGT+GGG + chr3_1:90761517-90761536 Msa0386920:intron 30.0%
AAGTGTCAATTTCTTTCGTT+TGG - chr3_1:90761585-90761604 None:intergenic 30.0%
ATAACAAGTGTGAGCAATTA+CGG - chr3_1:90761657-90761676 None:intergenic 30.0%
! GGATATTTCTGAATGGTTAT+GGG + chr3_1:90762029-90762048 Msa0386920:intron 30.0%
TTCATTGCAAAATGCAAAGT+TGG + chr3_1:90762506-90762525 Msa0386920:CDS 30.0%
AGAACGATTTAGCTAATATG+TGG + chr3_1:90762844-90762863 Msa0386920:CDS 30.0%
GAACGATTTAGCTAATATGT+GGG + chr3_1:90762845-90762864 Msa0386920:CDS 30.0%
GCTAAGTTAAAAAAAGAAGG+CGG + chr3_1:90762876-90762895 Msa0386920:CDS 30.0%
TAGAGAGAAAATTACACTCA+TGG - chr3_1:90762974-90762993 None:intergenic 30.0%
! TGAGTGTAATTTTCTCTCTA+AGG + chr3_1:90762974-90762993 Msa0386920:CDS 30.0%
! TTCTATATAGATTGGCTAAC+AGG + chr3_1:90763128-90763147 Msa0386920:intron 30.0%
TTAGTATAACTAGGCACATT+GGG - chr3_1:90763182-90763201 None:intergenic 30.0%
ATTAGTATAACTAGGCACAT+TGG - chr3_1:90763183-90763202 None:intergenic 30.0%
TTATACTCAGGTTATCCAAT+TGG - chr3_1:90763299-90763318 None:intergenic 30.0%
AATTACTGCAGAAACTGAAT+CGG - chr3_1:90763329-90763348 None:intergenic 30.0%
TACTTTACAAACATGGGAAT+TGG - chr3_1:90763570-90763589 None:intergenic 30.0%
AAAAAATGCCAAGAATCTGA+GGG - chr3_1:90763678-90763697 None:intergenic 30.0%
AAAAAAATGCCAAGAATCTG+AGG - chr3_1:90763679-90763698 None:intergenic 30.0%
GTAATATTTGTGCGACATAT+AGG - chr3_1:90763776-90763795 None:intergenic 30.0%
! ATTTTATCCCATGCAATTAG+GGG + chr3_1:90763951-90763970 Msa0386920:three_prime_UTR 30.0%
TGTATAATAGGGGAAAACAA+AGG + chr3_1:90764060-90764079 Msa0386920:three_prime_UTR 30.0%
GTATAATAGGGGAAAACAAA+GGG + chr3_1:90764061-90764080 Msa0386920:three_prime_UTR 30.0%
TATAATAGGGGAAAACAAAG+GGG + chr3_1:90764062-90764081 Msa0386920:three_prime_UTR 30.0%
GTGGAGAAAGAATGTAAAAA+AGG + chr3_1:90764086-90764105 Msa0386920:three_prime_UTR 30.0%
TCATACACCAATTTCTCTCA+TGG - chr3_1:90759909-90759928 None:intergenic 35.0%
!!! AGTACCAGTACTTCCTTTTT+TGG + chr3_1:90760256-90760275 Msa0386920:intron 35.0%
!!! GTACCAGTACTTCCTTTTTT+GGG + chr3_1:90760257-90760276 Msa0386920:intron 35.0%
! TAACCCAAAAAAGGAAGTAC+TGG - chr3_1:90760263-90760282 None:intergenic 35.0%
TTGATTACTTCCTCAAGGTT+TGG - chr3_1:90760323-90760342 None:intergenic 35.0%
GCTACCATGACAATAAAGTT+AGG + chr3_1:90760409-90760428 Msa0386920:intron 35.0%
CATGACAATAAAGTTAGGGA+GGG + chr3_1:90760414-90760433 Msa0386920:intron 35.0%
ATGACAATAAAGTTAGGGAG+GGG + chr3_1:90760415-90760434 Msa0386920:intron 35.0%
GAATCTTGTACAATCCCTAA+GGG + chr3_1:90760474-90760493 Msa0386920:intron 35.0%
! ATCTTTGGGTTAACTATGGA+TGG - chr3_1:90760903-90760922 None:intergenic 35.0%
! CATGATCTTTGGGTTAACTA+TGG - chr3_1:90760907-90760926 None:intergenic 35.0%
AGTTAACCCAAAGATCATGA+TGG + chr3_1:90760908-90760927 Msa0386920:intron 35.0%
CTGTATACCATCATGATCTT+TGG - chr3_1:90760918-90760937 None:intergenic 35.0%
! ATAGAAGACACAGGTTTTTG+AGG - chr3_1:90761105-90761124 None:intergenic 35.0%
TCAAAAACCTGTGTCTTCTA+TGG + chr3_1:90761104-90761123 Msa0386920:intron 35.0%
! TGCAGCTGTAGTTTTCTTTT+TGG + chr3_1:90761172-90761191 Msa0386920:intron 35.0%
GGTTGGGTGATTAATAAAGT+TGG + chr3_1:90761322-90761341 Msa0386920:intron 35.0%
AAAAAGGAAAATTCCAAGGC+AGG + chr3_1:90761427-90761446 Msa0386920:intron 35.0%
GAGAAGAAGAAAAAAAGGTG+TGG + chr3_1:90761516-90761535 Msa0386920:intron 35.0%
TGTGGAAAACTGAAAAAGCA+TGG - chr3_1:90761832-90761851 None:intergenic 35.0%
!!! TGCTTTTTCAGTTTTCCACA+AGG + chr3_1:90761832-90761851 Msa0386920:intron 35.0%
! TACATTGCTATTGTTCCTTG+TGG - chr3_1:90761850-90761869 None:intergenic 35.0%
! GGGATATTTCTGAATGGTTA+TGG + chr3_1:90762028-90762047 Msa0386920:intron 35.0%
! TATTTCTGAATGGTTATGGG+TGG + chr3_1:90762032-90762051 Msa0386920:intron 35.0%
ATTTCTGAATGGTTATGGGT+GGG + chr3_1:90762033-90762052 Msa0386920:intron 35.0%
!!! ACCAAGACTCTCGAATTTTT+TGG + chr3_1:90762089-90762108 Msa0386920:intron 35.0%
TCCAAAAAATTCGAGAGTCT+TGG - chr3_1:90762093-90762112 None:intergenic 35.0%
CCTTAGGAAATGTTAGAAAC+TGG - chr3_1:90762254-90762273 None:intergenic 35.0%
CCAGTTTCTAACATTTCCTA+AGG + chr3_1:90762251-90762270 Msa0386920:intron 35.0%
ACAACATTGTGTCATCATTC+AGG - chr3_1:90762279-90762298 None:intergenic 35.0%
! TGACACAATGTTGTGTTGAT+TGG + chr3_1:90762285-90762304 Msa0386920:intron 35.0%
!!! ACGTTTTCTTCCTTGTTTTC+AGG + chr3_1:90762317-90762336 Msa0386920:intron 35.0%
ACTTGTCAGAAGACAATAGT+GGG + chr3_1:90762376-90762395 Msa0386920:CDS 35.0%
TGTCCAGAATCAGAAACTAT+CGG + chr3_1:90762404-90762423 Msa0386920:CDS 35.0%
AGCTTCTTATGCCAAAGAAT+TGG + chr3_1:90762431-90762450 Msa0386920:CDS 35.0%
TGCTGTAGAACTGAAGAATT+TGG + chr3_1:90762464-90762483 Msa0386920:CDS 35.0%
TAGAACTGAAGAATTTGGCT+GGG + chr3_1:90762469-90762488 Msa0386920:CDS 35.0%
GGTTAACACCATTAACCATT+TGG - chr3_1:90762581-90762600 None:intergenic 35.0%
ATCTTCCATCACTGTACTTA+CGG - chr3_1:90762602-90762621 None:intergenic 35.0%
GTTTAGATGACTTTGAGTCA+TGG + chr3_1:90762673-90762692 Msa0386920:CDS 35.0%
GTTGTCTGAGAAAGAATTTG+TGG + chr3_1:90762767-90762786 Msa0386920:CDS 35.0%
TGAGAAAGAATTTGTGGAAG+AGG + chr3_1:90762773-90762792 Msa0386920:CDS 35.0%
ATTAGCTAAATCGTTCTCCA+AGG - chr3_1:90762841-90762860 None:intergenic 35.0%
! TATGTGTTGCTAGTATTCCT+TGG - chr3_1:90763209-90763228 None:intergenic 35.0%
TGGATAACCTGAGTATAACA+TGG + chr3_1:90763301-90763320 Msa0386920:intron 35.0%
GAAATTATGCGCTTAGTCAT+TGG - chr3_1:90763409-90763428 None:intergenic 35.0%
TGTTGCAATGTTGTGATTTC+AGG + chr3_1:90763490-90763509 Msa0386920:intron 35.0%
GAAAAAGAACTCAAGTACCT+TGG + chr3_1:90763533-90763552 Msa0386920:CDS 35.0%
TTACAACAAAAATGTCGGCA+TGG - chr3_1:90763626-90763645 None:intergenic 35.0%
AACTATTTCCCTCAGATTCT+TGG + chr3_1:90763667-90763686 Msa0386920:three_prime_UTR 35.0%
CATCTTGACCTTATTAACAG+AGG + chr3_1:90763816-90763835 Msa0386920:three_prime_UTR 35.0%
AGCAAAGACCTCTGTTAATA+AGG - chr3_1:90763827-90763846 None:intergenic 35.0%
!!! TCTGCTGTTTTAATGTTTGC+AGG + chr3_1:90763910-90763929 Msa0386920:intron 35.0%
!!! CTGCTGTTTTAATGTTTGCA+GGG + chr3_1:90763911-90763930 Msa0386920:intron 35.0%
CTTTCAAACGGTCTTACATT+TGG - chr3_1:90763998-90764017 None:intergenic 35.0%
CAAATGTAAGACCGTTTGAA+AGG + chr3_1:90763996-90764015 Msa0386920:three_prime_UTR 35.0%
GTTCATATATACTTCAGAGG+CGG - chr3_1:90764127-90764146 None:intergenic 35.0%
! GTATTTTACTGCAAATCCTC+TGG + chr3_1:90764166-90764185 Msa0386920:three_prime_UTR 35.0%
AAAAAGACCGTTATGCCCTT+CGG - chr3_1:90760045-90760064 None:intergenic 40.0%
! TTGTTGTTCACACTTGGCTT+AGG - chr3_1:90760083-90760102 None:intergenic 40.0%
!! AAAAGGAAGTACTGGTACTC+AGG - chr3_1:90760255-90760274 None:intergenic 40.0%
!!! CCTTTTTTGGGTTACAGTAC+CGG + chr3_1:90760269-90760288 Msa0386920:intron 40.0%
ACCTTGAGGAAGTAATCAAG+AGG + chr3_1:90760324-90760343 Msa0386920:intron 40.0%
TCCTCTTGATTACTTCCTCA+AGG - chr3_1:90760328-90760347 None:intergenic 40.0%
TGAGGAAGTAATCAAGAGGA+AGG + chr3_1:90760328-90760347 Msa0386920:intron 40.0%
CCTCCCTAACTTTATTGTCA+TGG - chr3_1:90760416-90760435 None:intergenic 40.0%
CCATGACAATAAAGTTAGGG+AGG + chr3_1:90760413-90760432 Msa0386920:intron 40.0%
CGAATCTTGTACAATCCCTA+AGG + chr3_1:90760473-90760492 Msa0386920:intron 40.0%
AAGAAGTCCATAGAAGACAC+AGG - chr3_1:90761114-90761133 None:intergenic 40.0%
GGACTTCTTTCACAGATACA+AGG + chr3_1:90761125-90761144 Msa0386920:intron 40.0%
TTCTTTCACAGATACAAGGC+AGG + chr3_1:90761129-90761148 Msa0386920:intron 40.0%
GAAAACTACAGCTGCATAAC+AGG - chr3_1:90761168-90761187 None:intergenic 40.0%
GCAGCACAAATACAAGGAAA+AGG - chr3_1:90761234-90761253 None:intergenic 40.0%
TGGCTGTTCAAAAAAAAGGC+AGG + chr3_1:90761342-90761361 Msa0386920:intron 40.0%
GGATGATACATGGGCATTAA+TGG + chr3_1:90761448-90761467 Msa0386920:intron 40.0%
! TTTCTCTCTGTTTTCTTCGC+AGG + chr3_1:90761490-90761509 Msa0386920:intron 40.0%
! TTGGTTTGAGAGAGAGAGAA+GGG - chr3_1:90761629-90761648 None:intergenic 40.0%
!! TTTGGTTTGAGAGAGAGAGA+AGG - chr3_1:90761630-90761649 None:intergenic 40.0%
CACTTGTCAGAAGACAATAG+TGG + chr3_1:90762375-90762394 Msa0386920:CDS 40.0%
GTAGAACTGAAGAATTTGGC+TGG + chr3_1:90762468-90762487 Msa0386920:CDS 40.0%
AGAACTGAAGAATTTGGCTG+GGG + chr3_1:90762470-90762489 Msa0386920:CDS 40.0%
TAACCATTTGGACAGCAACA+CGG - chr3_1:90762569-90762588 None:intergenic 40.0%
GTTGCTGTCCAAATGGTTAA+TGG + chr3_1:90762570-90762589 Msa0386920:CDS 40.0%
GTTAACCGTAAGTACAGTGA+TGG + chr3_1:90762594-90762613 Msa0386920:CDS 40.0%
! AAGTACAGTGATGGAAGATC+TGG + chr3_1:90762603-90762622 Msa0386920:CDS 40.0%
! AGTACAGTGATGGAAGATCT+GGG + chr3_1:90762604-90762623 Msa0386920:CDS 40.0%
GTCTTGATGCTGATGATTTG+AGG + chr3_1:90762697-90762716 Msa0386920:CDS 40.0%
AATTTGTGGAAGAGGAGTTC+AGG + chr3_1:90762781-90762800 Msa0386920:CDS 40.0%
! CAAGGCTTCTTCTCTTTTCT+TGG - chr3_1:90762823-90762842 None:intergenic 40.0%
CAAGAAAAGAGAAGAAGCCT+TGG + chr3_1:90762821-90762840 Msa0386920:CDS 40.0%
CTGGATGTATCAAAACCACA+TGG + chr3_1:90763005-90763024 Msa0386920:CDS 40.0%
ACCACATGGTGAAATTCCTA+AGG + chr3_1:90763019-90763038 Msa0386920:CDS 40.0%
TCCTTAGGAATTTCACCATG+TGG - chr3_1:90763023-90763042 None:intergenic 40.0%
TATAACTAGGCACATTGGGT+GGG - chr3_1:90763178-90763197 None:intergenic 40.0%
GAACTCAAGTACCTTGGAAA+CGG + chr3_1:90763539-90763558 Msa0386920:CDS 40.0%
AATTGCACCCCTAATTGCAT+GGG - chr3_1:90763961-90763980 None:intergenic 40.0%
! TCTTTCTTTTGAACTACCCC+TGG + chr3_1:90764032-90764051 Msa0386920:three_prime_UTR 40.0%
! CTTTCTTTTGAACTACCCCT+GGG + chr3_1:90764033-90764052 Msa0386920:three_prime_UTR 40.0%
! TTTCTTTTGAACTACCCCTG+GGG + chr3_1:90764034-90764053 Msa0386920:three_prime_UTR 40.0%
CCTATTATACAATTCCCCAG+GGG - chr3_1:90764051-90764070 None:intergenic 40.0%
CCCTATTATACAATTCCCCA+GGG - chr3_1:90764052-90764071 None:intergenic 40.0%
CCCTGGGGAATTGTATAATA+GGG + chr3_1:90764049-90764068 Msa0386920:three_prime_UTR 40.0%
CCTGGGGAATTGTATAATAG+GGG + chr3_1:90764050-90764069 Msa0386920:three_prime_UTR 40.0%
! AAAAAAGGGAAAGGGTGCAA+AGG + chr3_1:90764101-90764120 Msa0386920:three_prime_UTR 40.0%
ACTGCTCTTATACTCAGCAA+AGG - chr3_1:90764197-90764216 None:intergenic 40.0%
ATGGCGTCCATGAGAGAAAT+TGG + chr3_1:90759899-90759918 Msa0386920:CDS 45.0%
TTAGGAATTCCTCGACGGTT+AGG - chr3_1:90760012-90760031 None:intergenic 45.0%
CCGGTACTGTAACCCAAAAA+AGG - chr3_1:90760272-90760291 None:intergenic 45.0%
GGAAGTAATCAAGAGGAAGG+TGG + chr3_1:90760331-90760350 Msa0386920:intron 45.0%
GAATTGAAGCCCAGCAAAGA+TGG + chr3_1:90760373-90760392 Msa0386920:intron 45.0%
! ACAATCCCTAAGGGTGTGTT+TGG + chr3_1:90760483-90760502 Msa0386920:intron 45.0%
ATGATTGTGGCTGAGACGAA+AGG - chr3_1:90760952-90760971 None:intergenic 45.0%
CTGATCTTGCCCTGTATGTA+CGG + chr3_1:90761197-90761216 Msa0386920:intron 45.0%
TTGCCCTGTATGTACGGTAT+AGG + chr3_1:90761203-90761222 Msa0386920:intron 45.0%
TGCCCTGTATGTACGGTATA+GGG + chr3_1:90761204-90761223 Msa0386920:intron 45.0%
CTCCCTATACCGTACATACA+GGG - chr3_1:90761209-90761228 None:intergenic 45.0%
ACTCCCTATACCGTACATAC+AGG - chr3_1:90761210-90761229 None:intergenic 45.0%
TCCCTGTATTACTTCACGCT+GGG + chr3_1:90761254-90761273 Msa0386920:intron 45.0%
!!! GCTGGGGTTGTTTTTCTTGT+TGG + chr3_1:90761271-90761290 Msa0386920:intron 45.0%
CAACCTCATAAGACAGGAAG+GGG - chr3_1:90761307-90761326 None:intergenic 45.0%
CCAACCTCATAAGACAGGAA+GGG - chr3_1:90761308-90761327 None:intergenic 45.0%
CCTTCCTGTCTTATGAGGTT+GGG + chr3_1:90761306-90761325 Msa0386920:intron 45.0%
ATCACCCAACCTCATAAGAC+AGG - chr3_1:90761313-90761332 None:intergenic 45.0%
TTCCAAGGCAGGATGATACA+TGG + chr3_1:90761438-90761457 Msa0386920:intron 45.0%
TCCAAGGCAGGATGATACAT+GGG + chr3_1:90761439-90761458 Msa0386920:intron 45.0%
! GTTTGGAACACGAGAGAAAC+AGG - chr3_1:90761568-90761587 None:intergenic 45.0%
TGGTTTGAGAGAGAGAGAAG+GGG - chr3_1:90761628-90761647 None:intergenic 45.0%
GTGAGCAATTACGGTCTGTT+TGG - chr3_1:90761648-90761667 None:intergenic 45.0%
GTTAGTGCCAATCGCATAGT+TGG + chr3_1:90761775-90761794 Msa0386920:intron 45.0%
AGCAAAGCCAACTATGCGAT+TGG - chr3_1:90761785-90761804 None:intergenic 45.0%
!!! TTGGCTTTGCTTTTGCACTG+TGG + chr3_1:90761794-90761813 Msa0386920:intron 45.0%
AGACCAGGCTCTTGAATTCT+TGG + chr3_1:90762058-90762077 Msa0386920:intron 45.0%
CAGGCTCTTGAATTCTTGGA+GGG + chr3_1:90762062-90762081 Msa0386920:intron 45.0%
TGTCATCATTCAGGAGCCTT+AGG - chr3_1:90762270-90762289 None:intergenic 45.0%
CCTCCGATAGTTTCTGATTC+TGG - chr3_1:90762410-90762429 None:intergenic 45.0%
CCAGAATCAGAAACTATCGG+AGG + chr3_1:90762407-90762426 Msa0386920:CDS 45.0%
! ATTGATGACTGTACGAGACC+TGG + chr3_1:90762536-90762555 Msa0386920:CDS 45.0%
AACCATTTGGACAGCAACAC+GGG - chr3_1:90762568-90762587 None:intergenic 45.0%
CTCCTGAAAGGTCATTAGCA+CGG - chr3_1:90762650-90762669 None:intergenic 45.0%
CATCTAAACCAGCTCCTGAA+AGG - chr3_1:90762662-90762681 None:intergenic 45.0%
! TGATGCTGATGATTTGAGGC+TGG + chr3_1:90762701-90762720 Msa0386920:CDS 45.0%
GGAAGAGGAGTTCAGGAAAA+AGG + chr3_1:90762788-90762807 Msa0386920:CDS 45.0%
GACGGGGCTGAAAACATAAA+CGG + chr3_1:90762933-90762952 Msa0386920:CDS 45.0%
AATTCCTAAGGAAGAACCCC+TGG + chr3_1:90763031-90763050 Msa0386920:CDS 45.0%
TGCAGTACACTGTTACCTTG+AGG - chr3_1:90763064-90763083 None:intergenic 45.0%
GTATAACTAGGCACATTGGG+TGG - chr3_1:90763179-90763198 None:intergenic 45.0%
ATCGGCACCATGTTATACTC+AGG - chr3_1:90763311-90763330 None:intergenic 45.0%
AATTGGCATCACCGTTTCCA+AGG - chr3_1:90763553-90763572 None:intergenic 45.0%
GGAAGAAGAATAGCAGCAGT+TGG - chr3_1:90763605-90763624 None:intergenic 45.0%
ACACTGCAAGAGCAAACAAG+AGG - chr3_1:90763721-90763740 None:intergenic 45.0%
GAATTGCACCCCTAATTGCA+TGG - chr3_1:90763962-90763981 None:intergenic 45.0%
CCCCTGGGGAATTGTATAAT+AGG + chr3_1:90764048-90764067 Msa0386920:three_prime_UTR 45.0%
CCCCTATTATACAATTCCCC+AGG - chr3_1:90764053-90764072 None:intergenic 45.0%
CTCAGCAAAGGAATAACCAG+AGG - chr3_1:90764185-90764204 None:intergenic 45.0%
!!! TATTATTTTAACTTTTTTTT+TGG - chr3_1:90761736-90761755 None:intergenic 5.0%
ATAGCAGAACCTAACCGTCG+AGG + chr3_1:90760000-90760019 Msa0386920:intron 50.0%
ACCGTCGAGGAATTCCTAAC+CGG + chr3_1:90760013-90760032 Msa0386920:intron 50.0%
CTACGCCAAACACACCCTTA+GGG - chr3_1:90760491-90760510 None:intergenic 50.0%
TCTACGCCAAACACACCCTT+AGG - chr3_1:90760492-90760511 None:intergenic 50.0%
CAGGGAGCAGCACAAATACA+AGG - chr3_1:90761240-90761259 None:intergenic 50.0%
CTCCCTGTATTACTTCACGC+TGG + chr3_1:90761253-90761272 Msa0386920:intron 50.0%
CCCCAGCGTGAAGTAATACA+GGG - chr3_1:90761258-90761277 None:intergenic 50.0%
CCCTGTATTACTTCACGCTG+GGG + chr3_1:90761255-90761274 Msa0386920:intron 50.0%
ACCCCAGCGTGAAGTAATAC+AGG - chr3_1:90761259-90761278 None:intergenic 50.0%
CCCTTCCTGTCTTATGAGGT+TGG + chr3_1:90761305-90761324 Msa0386920:intron 50.0%
CCCAACCTCATAAGACAGGA+AGG - chr3_1:90761309-90761328 None:intergenic 50.0%
GGTTTGAGAGAGAGAGAAGG+GGG - chr3_1:90761627-90761646 None:intergenic 50.0%
CCTCCAAGAATTCAAGAGCC+TGG - chr3_1:90762064-90762083 None:intergenic 50.0%
CCAGGCTCTTGAATTCTTGG+AGG + chr3_1:90762061-90762080 Msa0386920:intron 50.0%
AGCAGCAGAGGCCAATTCTT+TGG - chr3_1:90762445-90762464 None:intergenic 50.0%
! ACAGTGATGGAAGATCTGGG+AGG + chr3_1:90762607-90762626 Msa0386920:CDS 50.0%
TGATGGAAGATCTGGGAGGA+AGG + chr3_1:90762611-90762630 Msa0386920:CDS 50.0%
GATGGAAGATCTGGGAGGAA+GGG + chr3_1:90762612-90762631 Msa0386920:CDS 50.0%
ATGGAAGATCTGGGAGGAAG+GGG + chr3_1:90762613-90762632 Msa0386920:CDS 50.0%
AGCCGTGCTAATGACCTTTC+AGG + chr3_1:90762645-90762664 Msa0386920:CDS 50.0%
GCTAATGACCTTTCAGGAGC+TGG + chr3_1:90762651-90762670 Msa0386920:CDS 50.0%
! TGATTTGAGGCTGGAACTGC+AGG + chr3_1:90762710-90762729 Msa0386920:CDS 50.0%
! TCTCTCTAAGGAGCAGCATC+TGG + chr3_1:90762986-90763005 Msa0386920:CDS 50.0%
ACAACCAGGGGTTCTTCCTT+AGG - chr3_1:90763038-90763057 None:intergenic 50.0%
AGTCTCTCAGCAGATCGTTC+TGG - chr3_1:90763463-90763482 None:intergenic 50.0%
GGCACGTATGCAAGAGATGA+AGG + chr3_1:90763511-90763530 Msa0386920:intron 50.0%
TAGGGGAAAACAAAGGGGAG+TGG + chr3_1:90764067-90764086 Msa0386920:three_prime_UTR 50.0%
GCCGGTTAGGAATTCCTCGA+CGG - chr3_1:90760017-90760036 None:intergenic 55.0%
TTATGCCCTTCGGCAGTTGC+CGG - chr3_1:90760035-90760054 None:intergenic 55.0%
! GCAACTGCCGAAGGGCATAA+CGG + chr3_1:90760035-90760054 Msa0386920:intron 55.0%
TCGCCCCTTCCTGTCTTATG+AGG + chr3_1:90761301-90761320 Msa0386920:intron 55.0%
GCCCATGTATCATCCTGCCT+TGG - chr3_1:90761443-90761462 None:intergenic 55.0%
GCGACAGACTAAACCAGCGT+GGG - chr3_1:90761544-90761563 None:intergenic 55.0%
TGCGACAGACTAAACCAGCG+TGG - chr3_1:90761545-90761564 None:intergenic 55.0%
TTGAGAGAGAGAGAAGGGGG+AGG - chr3_1:90761624-90761643 None:intergenic 55.0%
CAGTTCTACAGCAGCAGCAG+AGG - chr3_1:90762457-90762476 None:intergenic 55.0%
TTGGACAGCAACACGGGAGT+TGG - chr3_1:90762562-90762581 None:intergenic 55.0%
! CTCCCGTGTTGCTGTCCAAA+TGG + chr3_1:90762563-90762582 Msa0386920:CDS 55.0%
TACCTTGAGGCGCACAACCA+GGG - chr3_1:90763051-90763070 None:intergenic 55.0%
TTACCTTGAGGCGCACAACC+AGG - chr3_1:90763052-90763071 None:intergenic 55.0%
TCCTAACCGGCAACTGCCGA+AGG + chr3_1:90760026-90760045 Msa0386920:intron 60.0%
CCTAACCGGCAACTGCCGAA+GGG + chr3_1:90760027-90760046 Msa0386920:intron 60.0%
! AAAAGGTGTGGGACCCACGC+TGG + chr3_1:90761528-90761547 Msa0386920:intron 60.0%
GGTTATGGGTGGGAGAGACC+AGG + chr3_1:90762043-90762062 Msa0386920:intron 60.0%
GAAGATCTGGGAGGAAGGGG+AGG + chr3_1:90762616-90762635 Msa0386920:CDS 60.0%
TGAGGCTGGAACTGCAGGCT+AGG + chr3_1:90762715-90762734 Msa0386920:CDS 60.0%
GCAGGCTAGGAAACAGCGAG+AGG + chr3_1:90762728-90762747 Msa0386920:CDS 60.0%
GAAACAGCGAGAGGCTGCTC+TGG + chr3_1:90762737-90762756 Msa0386920:CDS 60.0%
ACCTTGAGGCGCACAACCAG+GGG - chr3_1:90763050-90763069 None:intergenic 60.0%
! CCCTTCGGCAGTTGCCGGTT+AGG - chr3_1:90760030-90760049 None:intergenic 65.0%
CAGCAACACGGGAGTTGGCC+AGG - chr3_1:90762557-90762576 None:intergenic 65.0%
ACCCCTGGTTGTGCGCCTCA+AGG + chr3_1:90763046-90763065 Msa0386920:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 90759880 90764297 90759880 ID=Msa0386920;Name=Msa0386920
chr3_1 mRNA 90759880 90764297 90759880 ID=Msa0386920-mRNA-1;Parent=Msa0386920;Name=Msa0386920-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.66|0.5|0.75|0.66|0.5|4|545|320
chr3_1 exon 90759880 90759966 90759880 ID=Msa0386920-mRNA-1:exon:25098;Parent=Msa0386920-mRNA-1
chr3_1 exon 90762339 90763067 90762339 ID=Msa0386920-mRNA-1:exon:25099;Parent=Msa0386920-mRNA-1
chr3_1 exon 90763512 90763837 90763512 ID=Msa0386920-mRNA-1:exon:25100;Parent=Msa0386920-mRNA-1
chr3_1 exon 90763932 90764297 90763932 ID=Msa0386920-mRNA-1:exon:25101;Parent=Msa0386920-mRNA-1
chr3_1 CDS 90759880 90759966 90759880 ID=Msa0386920-mRNA-1:cds;Parent=Msa0386920-mRNA-1
chr3_1 CDS 90762339 90763067 90762339 ID=Msa0386920-mRNA-1:cds;Parent=Msa0386920-mRNA-1
chr3_1 CDS 90763512 90763658 90763512 ID=Msa0386920-mRNA-1:cds;Parent=Msa0386920-mRNA-1
chr3_1 three_prime_UTR 90763659 90763837 90763659 ID=Msa0386920-mRNA-1:three_prime_utr;Parent=Msa0386920-mRNA-1
chr3_1 three_prime_UTR 90763932 90764297 90763932 ID=Msa0386920-mRNA-1:three_prime_utr;Parent=Msa0386920-mRNA-1
Gene Sequence

>Msa0386920

ATGTACAAAATTTATTCATATGGCGTCCATGAGAGAAATTGGTGTATGAGTTGTACTGCCTTTGAAATTGATGTTACTGAATTACAGGAAATTGAAAATGAAAAACTTAAGCTAGAGCAAGTTCACTTGTCAGAAGACAATAGTGGGTTGCGTGTCCAGAATCAGAAACTATCGGAGGAAGCTTCTTATGCCAAAGAATTGGCCTCTGCTGCTGCTGTAGAACTGAAGAATTTGGCTGGGGAAGTGACAAAACTTTCATTGCAAAATGCAAAGTTGGAAAAAGAATTGATGACTGTACGAGACCTGGCCAACTCCCGTGTTGCTGTCCAAATGGTTAATGGTGTTAACCGTAAGTACAGTGATGGAAGATCTGGGAGGAAGGGGAGGATTTCTAGCCGTGCTAATGACCTTTCAGGAGCTGGTTTAGATGACTTTGAGTCATGGAGTCTTGATGCTGATGATTTGAGGCTGGAACTGCAGGCTAGGAAACAGCGAGAGGCTGCTCTGGAGTCTGCGTTGTCTGAGAAAGAATTTGTGGAAGAGGAGTTCAGGAAAAAGGCTGAAGAAGCCAAGAAAAGAGAAGAAGCCTTGGAGAACGATTTAGCTAATATGTGGGTCCTTGTTGCTAAGTTAAAAAAAGAAGGCGGAATTGTCCCAGAATCAAACATTGATAAAAAATTTGACGGGGCTGAAAACATAAACGGTCAACAAAATAACGACCATGAGTGTAATTTTCTCTCTAAGGAGCAGCATCTGGATGTATCAAAACCACATGGTGAAATTCCTAAGGAAGAACCCCTGGTTGTGCGCCTCAAGGCACGTATGCAAGAGATGAAGGAAAAAGAACTCAAGTACCTTGGAAACGGTGATGCCAATTCCCATGTTTGTAAAGTATGTTTTGAATCTCCAACTGCTGCTATTCTTCTTCCATGCCGACATTTTTGTTGTAAGTATTTTCAGTAG
Protein sequence

>Msa0386920

MYKIYSYGVHERNWCMSCTAFEIDVTELQEIENEKLKLEQVHLSEDNSGLRVQNQKLSEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELMTVRDLANSRVAVQMVNGVNRKYSDGRSGRKGRISSRANDLSGAGLDDFESWSLDADDLRLELQARKQREAALESALSEKEFVEEEFRKKAEEAKKREEALENDLANMWVLVAKLKKEGGIVPESNIDKKFDGAENINGQQNNDHECNFLSKEQHLDVSKPHGEIPKEEPLVVRLKARMQEMKEKELKYLGNGDANSHVCKVCFESPTAAILLPCRHFCCKYFQ*