AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1219000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1219000 MtrunA17_Chr4g0068761 96.482 199 7 0 1 199 1 199 6.17e-114 333
Msa1219000 MtrunA17_Chr4g0051031 55.195 154 60 5 286 434 136 285 5.05e-40 147
Msa1219000 MtrunA17_Chr6g0476271 50.000 160 76 2 286 443 145 302 8.12e-38 141
Msa1219000 MtrunA17_Chr4g0010591 51.429 140 57 5 298 434 74 205 2.59e-35 132
Msa1219000 MtrunA17_Chr3g0090291 48.780 164 69 3 284 434 135 296 5.74e-35 134
Msa1219000 MtrunA17_Chr4g0010541 51.429 140 57 5 298 434 145 276 8.88e-35 133
Msa1219000 MtrunA17_Chr4g0062591 53.472 144 60 3 297 433 145 288 1.13e-34 133
Msa1219000 MtrunA17_Chr4g0066011 53.237 139 62 2 297 433 154 291 1.19e-34 133
Msa1219000 MtrunA17_Chr4g0065061 52.482 141 61 4 297 434 161 298 1.56e-34 132
Msa1219000 MtrunA17_Chr4g0010621 50.000 142 59 5 297 434 146 279 1.15e-32 127
Msa1219000 MtrunA17_Chr3g0090281 48.171 164 70 3 284 434 135 296 2.02e-32 127
Msa1219000 MtrunA17_Chr3g0090301 46.951 164 72 3 284 434 135 296 2.89e-32 126
Msa1219000 MtrunA17_Chr4g0010561 50.355 141 64 4 297 434 184 321 5.03e-31 124
Msa1219000 MtrunA17_Chr4g0066101 49.673 153 67 5 290 433 147 298 7.80e-31 122
Msa1219000 MtrunA17_Chr3g0134731 48.299 147 63 5 297 434 156 298 1.45e-29 119
Msa1219000 MtrunA17_Chr4g0065051 50.725 138 60 4 303 434 43 178 2.11e-29 115
Msa1219000 MtrunA17_Chr4g0066431 45.833 168 78 4 287 443 148 313 2.51e-29 117
Msa1219000 MtrunA17_Chr8g0353991 46.053 152 77 3 297 443 159 310 3.55e-29 118
Msa1219000 MtrunA17_Chr8g0350131 47.239 163 71 5 275 432 164 316 6.79e-29 117
Msa1219000 MtrunA17_Chr4g0010631 46.853 143 65 5 297 435 146 281 7.94e-29 116
Msa1219000 MtrunA17_Chr4g0010611 47.183 142 64 5 297 434 146 280 1.96e-28 115
Msa1219000 MtrunA17_Chr8g0339911 53.030 132 54 3 286 415 131 256 4.39e-28 112
Msa1219000 MtrunA17_Chr6g0475191 53.509 114 47 4 324 433 15 126 4.43e-28 110
Msa1219000 MtrunA17_Chr4g0010531 50.000 146 62 5 297 434 138 280 4.89e-28 114
Msa1219000 MtrunA17_Chr4g0061251 53.097 113 50 2 323 434 168 278 8.21e-28 113
Msa1219000 MtrunA17_Chr4g0068771 50.000 120 53 4 320 434 3 120 9.80e-28 110
Msa1219000 MtrunA17_Chr4g0010581 48.980 147 64 5 297 435 138 281 1.11e-27 113
Msa1219000 MtrunA17_Chr4g0009891 46.104 154 72 6 298 447 145 291 1.77e-27 112
Msa1219000 MtrunA17_Chr5g0393561 46.154 143 71 4 297 434 156 297 1.52e-26 108
Msa1219000 MtrunA17_Chr4g0066421 40.000 210 104 7 245 443 10 208 2.77e-26 107
Msa1219000 MtrunA17_Chr5g0429691 45.455 143 69 5 297 433 166 305 4.61e-23 100
Msa1219000 MtrunA17_Chr4g0061241 43.662 142 68 5 297 433 149 283 6.10e-23 99.8
Msa1219000 MtrunA17_Chr4g0066071 44.828 145 68 6 297 434 148 287 1.22e-22 99.0
Msa1219000 MtrunA17_Chr4g0066041 44.444 144 70 5 297 434 148 287 4.89e-22 97.4
Msa1219000 MtrunA17_Chr1g0176691 43.056 144 69 4 296 434 204 339 4.96e-22 97.8
Msa1219000 MtrunA17_Chr1g0176661 43.750 160 75 6 297 443 148 305 1.56e-21 95.9
Msa1219000 MtrunA17_Chr5g0447471 42.759 145 74 4 297 434 142 284 5.78e-21 94.4
Msa1219000 MtrunA17_Chr4g0010691 42.857 126 52 4 297 421 183 289 3.59e-20 90.9
Msa1219000 MtrunA17_Chr8g0350141 39.474 152 60 5 289 433 139 265 2.29e-18 86.3
Msa1219000 MtrunA17_Chr5g0429701 41.497 147 72 6 297 433 162 304 5.99e-18 85.5
Msa1219000 MtrunA17_Chr4g0065071 55.263 76 32 1 297 370 92 167 6.21e-18 81.3
Msa1219000 MtrunA17_Chr5g0429741 34.574 188 96 9 261 433 120 295 2.22e-17 84.0
Msa1219000 MtrunA17_Chr4g0010741 37.500 136 52 3 299 434 157 259 7.38e-16 78.6
Msa1219000 MtrunA17_Chr8g0389891 34.641 153 79 5 296 434 1 146 5.56e-15 74.3
Msa1219000 MtrunA17_Chr4g0066021 40.000 160 79 6 299 443 133 290 5.85e-15 76.3
Msa1219000 MtrunA17_Chr1g0176741 33.854 192 77 7 253 432 44 197 7.45e-14 72.4
Msa1219000 MtrunA17_Chr4g0068131 51.163 86 36 3 287 366 146 231 1.63e-13 71.2
Msa1219000 MtrunA17_Chr8g0387361 38.261 115 63 4 326 434 9 121 4.00e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 114 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCGAATCCCTTGTAAAATT+AGG 0.135026 8_1:+81680264 Msa1219000:CDS
ATCATGGTAAAGTTAAAATA+TGG 0.186204 8_1:+81681176 Msa1219000:CDS
CCTTGTAAAATTAGGGTTAC+TGG 0.224632 8_1:+81680272 Msa1219000:CDS
CCTGGTCTTATGTATGGTTT+TGG 0.247575 8_1:+81680800 Msa1219000:CDS
TATTGTTGTCTTTGATTTGA+TGG 0.255994 8_1:+81681051 Msa1219000:CDS
TATTGTCGTTTGTGGTTATT+TGG 0.263189 8_1:+81681127 Msa1219000:CDS
TTGTCTGACCTCTTTCTCTT+TGG 0.280363 8_1:-81676704 None:intergenic
TTTCATTGTGCTGTGATCTA+TGG 0.298132 8_1:+81680855 Msa1219000:CDS
TCAAAACGTAAATTACAATA+AGG 0.310687 8_1:-81680646 None:intergenic
TCGAATCCCTTGTAAAATTA+GGG 0.312439 8_1:+81680265 Msa1219000:CDS
ATTATACAAACATCTACTTA+TGG 0.324505 8_1:+81680707 Msa1219000:CDS
GTGAAGAAGGTGCTTGAGTA+TGG 0.338744 8_1:+81680302 Msa1219000:CDS
TCTGACCTCTTTCTCTTTGG+TGG 0.353625 8_1:-81676701 None:intergenic
GAATACAAAGTGCATTTACT+TGG 0.380406 8_1:+81681208 Msa1219000:CDS
GACTTTGAACCTGTGGAAAA+TGG 0.383052 8_1:+81676596 Msa1219000:CDS
TCAGTTGAAGAAGTAGTTGA+TGG 0.404943 8_1:+81675177 Msa1219000:CDS
GATGATTATGACGGCATACT+TGG 0.413716 8_1:+81681103 Msa1219000:CDS
GGAGAACGAGGAAGAGGAAC+AGG 0.416231 8_1:+81675425 Msa1219000:CDS
TACTTGGATATTGTCGTTTG+TGG 0.423231 8_1:+81681119 Msa1219000:CDS
CATCACCCTGGTCTTATGTA+TGG 0.433730 8_1:+81680794 Msa1219000:CDS
TCTTTAGTGAAGCTATTCAT+TGG 0.434613 8_1:+81680990 Msa1219000:CDS
AAGATTTCGAAATTCGAATT+CGG 0.439423 8_1:-81675028 None:intergenic
TTCATTGTGCTGTGATCTAT+GGG 0.443785 8_1:+81680856 Msa1219000:CDS
ATGGGATTATTCATCACATT+GGG 0.452678 8_1:+81680874 Msa1219000:CDS
TCATGGTAAAGTTAAAATAT+GGG 0.452912 8_1:+81681177 Msa1219000:CDS
AGTGAAATCACTCTTGTAAA+GGG 0.466629 8_1:-81680948 None:intergenic
GAGTATCTTGTCCGCCCTCT+AGG 0.469645 8_1:+81676545 Msa1219000:CDS
TGATGACCCGTGCGCCGCAC+GGG 0.470990 8_1:+81681260 Msa1219000:CDS
CCCTCTAGGTGCTGCTGAGG+AGG 0.471471 8_1:+81676559 Msa1219000:CDS
TAGTGAAGCTATTCATTGGT+TGG 0.474127 8_1:+81680994 Msa1219000:CDS
CTGTCATCATCATCGTCATC+AGG 0.478014 8_1:-81675354 None:intergenic
GTAACGACGTGCACCTTCAT+CGG 0.483853 8_1:+81680620 Msa1219000:CDS
GATTTCACTCAACACAAAGT+AGG 0.488071 8_1:+81680962 Msa1219000:CDS
AGTATGCCGTCATAATCATC+TGG 0.488647 8_1:-81681100 None:intergenic
GAGTGAAATCACTCTTGTAA+AGG 0.496543 8_1:-81680949 None:intergenic
TCTCATTGAAAGATAATACA+TGG 0.498056 8_1:+81680903 Msa1219000:CDS
ATTTCACTCAACACAAAGTA+GGG 0.500078 8_1:+81680963 Msa1219000:CDS
CATAAGACCCGTGCGGCGCA+CGG 0.505363 8_1:-81681267 None:intergenic
TACAATAAGGAATCCGATGA+AGG 0.508430 8_1:-81680633 None:intergenic
TACTGGAAGCAGAGTGAAGA+AGG 0.509026 8_1:+81680289 Msa1219000:CDS
GATGATTCCGATGACGATGA+TGG 0.511741 8_1:+81676728 Msa1219000:CDS
CTCTCCTCCATCATCGTCAT+CGG 0.512020 8_1:-81676735 None:intergenic
TCTAGGTGCTGCTGAGGAGG+AGG 0.515413 8_1:+81676562 Msa1219000:CDS
GAAGCAAGTGGAGGAAAGTG+AGG 0.519338 8_1:+81675119 Msa1219000:CDS
TGAAGACAATGAGGAGGATG+AGG 0.521900 8_1:+81675239 Msa1219000:CDS
TACTTATGGAATCCATCCAC+TGG 0.525689 8_1:+81680721 Msa1219000:CDS
TTGATGACCCGTGCGCCGCA+CGG 0.527493 8_1:+81681259 Msa1219000:CDS
TGAGGAGGAGAACGAGGAAG+AGG 0.529676 8_1:+81675419 Msa1219000:CDS
GATGAAGTGGAGGAAGATGA+AGG 0.530159 8_1:+81676629 Msa1219000:CDS
ATAAGACCCGTGCGGCGCAC+GGG 0.531084 8_1:-81681266 None:intergenic
AGTGGAGGAAGATGAAGGTG+AGG 0.534123 8_1:+81676634 Msa1219000:CDS
CCTCCTCAGCAGCACCTAGA+GGG 0.535425 8_1:-81676559 None:intergenic
GAGGAGGATGAAGATGAAGA+AGG 0.535794 8_1:+81675300 Msa1219000:CDS
TGCGTGAATTCTCGTTTCAA+CGG 0.541250 8_1:+81674925 Msa1219000:five_prime_UTR
CCAAAACCATACATAAGACC+AGG 0.542076 8_1:-81680800 None:intergenic
TATGGGATTATTCATCACAT+TGG 0.545523 8_1:+81680873 Msa1219000:CDS
GATGACGACGATGAAGGTAC+TGG 0.547523 8_1:+81675261 Msa1219000:CDS
ATTGAATTTGAAGAAGCAAG+TGG 0.549489 8_1:+81675107 Msa1219000:CDS
TTGTCTTTGATTTGATGGAA+AGG 0.551425 8_1:+81681056 Msa1219000:CDS
AGTCTATGCGAGAATAATCA+TGG 0.551552 8_1:+81681160 Msa1219000:CDS
TTGAAAGATGAAGTTAACAG+AGG 0.560585 8_1:+81675083 Msa1219000:exon
GAAGGTGAGGAAGATGAAGG+TGG 0.562453 8_1:+81676647 Msa1219000:CDS
GAAGAAGGTGGAACAGCTGA+AGG 0.562641 8_1:+81675315 Msa1219000:CDS
GATGAGGATGACGACGATGA+AGG 0.563427 8_1:+81675255 Msa1219000:CDS
GATGAAGGTGAGGAAGATGA+AGG 0.565731 8_1:+81676644 Msa1219000:CDS
TCCTCCTCAGCAGCACCTAG+AGG 0.566944 8_1:-81676560 None:intergenic
CCACGTAATCATCTCTTGAC+TGG 0.567011 8_1:-81680829 None:intergenic
AGGTTCCACCAAAGAGAAAG+AGG 0.567677 8_1:+81676696 Msa1219000:CDS
GAGGATGAAGATGAAGAAGG+TGG 0.570237 8_1:+81675303 Msa1219000:CDS
CCGCCCTCTAGGTGCTGCTG+AGG 0.570609 8_1:+81676556 Msa1219000:CDS
AATACATGGAAACAGATTGA+AGG 0.572049 8_1:+81680917 Msa1219000:CDS
TGTATGCGAAATCCAGTGGA+TGG 0.572685 8_1:-81680733 None:intergenic
GAAATTAGAGGTTCATGCAG+AGG 0.576628 8_1:+81680667 Msa1219000:CDS
TGGTGTGGACGAAGATGAAG+TGG 0.587398 8_1:+81676616 Msa1219000:CDS
ATCTAGTGACTTTGAACCTG+TGG 0.594251 8_1:+81676589 Msa1219000:CDS
ACTGTGTTAGCGAAGAGAAG+AGG 0.599437 8_1:+81674968 Msa1219000:five_prime_UTR
CGATGATGAGGAGGAGAACG+AGG 0.600100 8_1:+81675413 Msa1219000:CDS
GAAGGTGGCAGTGATGATGA+TGG 0.609983 8_1:+81676662 Msa1219000:CDS
TTCGGTGTTGAAATCGAGCA+AGG 0.611094 8_1:-81675010 None:intergenic
CAGTGATGATGATGGTGAGA+AGG 0.611385 8_1:+81676670 Msa1219000:CDS
TCGATGACGTGGAAATGTAT+CGG 0.618645 8_1:-81674900 None:intergenic
TATTTGTATGCGAAATCCAG+TGG 0.619038 8_1:-81680737 None:intergenic
CGATGACGATGATGGAGGAG+AGG 0.619440 8_1:+81676736 Msa1219000:CDS
CCTCAGCAGCACCTAGAGGG+CGG 0.623892 8_1:-81676556 None:intergenic
CGTCTTCCAGATGATTATGA+CGG 0.629674 8_1:+81681094 Msa1219000:CDS
CATACATAAGACCAGGGTGA+TGG 0.633252 8_1:-81680793 None:intergenic
AGACGACGAGGACGATGATG+AGG 0.633637 8_1:+81675401 Msa1219000:CDS
GAAGACAGTGAAGATGATGA+AGG 0.634050 8_1:+81675201 Msa1219000:CDS
CGACGAGGACGATGATGAGG+AGG 0.638214 8_1:+81675404 Msa1219000:CDS
GAATTTGAAGAAGCAAGTGG+AGG 0.640087 8_1:+81675110 Msa1219000:CDS
GTGTTTCAACGAGGATAGTG+TGG 0.646870 8_1:-81674856 None:intergenic
GATAGTGTGGTTGAGCGTTG+CGG 0.655031 8_1:-81674843 None:intergenic
CAAAACCATACATAAGACCA+GGG 0.662587 8_1:-81680799 None:intergenic
TGAACCTGTGGAAAATGGTG+TGG 0.665989 8_1:+81676601 Msa1219000:CDS
GATTCCGATGACGATGATGG+AGG 0.666214 8_1:+81676731 Msa1219000:CDS
TGGCGGTGGTGATGAAGATG+AGG 0.668517 8_1:+81675281 Msa1219000:CDS
ATTCACGCAGATCGATGACG+TGG 0.676812 8_1:-81674911 None:intergenic
TGACGTGGAAATGTATCGGA+CGG 0.678179 8_1:-81674896 None:intergenic
TGATGATGGTGAGAAGGCTG+AGG 0.678911 8_1:+81676676 Msa1219000:CDS
TGTGGACGAAGATGAAGTGG+AGG 0.680459 8_1:+81676619 Msa1219000:CDS
GACGATGAAGGTACTGGCGG+TGG 0.681659 8_1:+81675267 Msa1219000:CDS
TGATGATGAAGACAATGAGG+AGG 0.682640 8_1:+81675233 Msa1219000:CDS
AACTTAAAAGACCATCACCC+TGG 0.683747 8_1:+81680782 Msa1219000:CDS
GTCAAGAGATGATTACGTGG+TGG 0.684132 8_1:+81680832 Msa1219000:CDS
CGGTGGTGATGAAGATGAGG+AGG 0.685551 8_1:+81675284 Msa1219000:CDS
GGAACAGCTGAAGGTGCACG+TGG 0.687851 8_1:+81675324 Msa1219000:CDS
GACGACGATGAAGGTACTGG+CGG 0.700903 8_1:+81675264 Msa1219000:CDS
CCAGTCAAGAGATGATTACG+TGG 0.706004 8_1:+81680829 Msa1219000:CDS
AAAAGATTTGTGTTTCAACG+AGG 0.709051 8_1:-81674865 None:intergenic
TGATGACAGTGACAATGATG+AGG 0.711629 8_1:+81675368 Msa1219000:CDS
GTATGATGATGAAGACAATG+AGG 0.726974 8_1:+81675230 Msa1219000:CDS
GGATGACGATGAAGACGACG+AGG 0.745183 8_1:+81675389 Msa1219000:CDS
ACAGCTGAAGGTGCACGTGG+TGG 0.755975 8_1:+81675327 Msa1219000:CDS
TACAGCTCATAAGACCCGTG+CGG 0.815866 8_1:-81681274 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTAAATATTATAAAAA+TGG - chr8_1:81677931-81677950 None:intergenic 0.0%
!! AAAACCAAATTAAAAAAAAA+TGG - chr8_1:81675529-81675548 None:intergenic 10.0%
!! AAAATAAATACAAATTCAAA+AGG - chr8_1:81675604-81675623 None:intergenic 10.0%
!! TGATTATTATTTGATATTTA+TGG + chr8_1:81675946-81675965 Msa1219000:intron 10.0%
!! TTTACTTAAAATTACAAATT+AGG - chr8_1:81676014-81676033 None:intergenic 10.0%
!! TAATAATATTTGATATATTG+AGG + chr8_1:81677303-81677322 Msa1219000:intron 10.0%
!! AATAATATTTGATATATTGA+GGG + chr8_1:81677304-81677323 Msa1219000:intron 10.0%
!!! ATATTTTATATGCTTTTTTA+AGG - chr8_1:81677596-81677615 None:intergenic 10.0%
!!! TTCTGAATTTATTTATTTTT+TGG + chr8_1:81679142-81679161 Msa1219000:intron 10.0%
!! TAATGTACTTAATTTATTAT+GGG + chr8_1:81679634-81679653 Msa1219000:intron 10.0%
!!! ATAACTAATTTTTGTAAATC+TGG + chr8_1:81675451-81675470 Msa1219000:intron 15.0%
!! AGAAAAATTAACAAACAAAA+AGG - chr8_1:81675497-81675516 None:intergenic 15.0%
!!! TGTTCCATTTTTTTTTAATT+TGG + chr8_1:81675522-81675541 Msa1219000:intron 15.0%
!!! TTGATTTTTTTTTTCTTCTA+TGG + chr8_1:81675693-81675712 Msa1219000:intron 15.0%
!! AAAAATCAAATTCTAACTTT+GGG - chr8_1:81675990-81676009 None:intergenic 15.0%
!! TAAAAATCAAATTCTAACTT+TGG - chr8_1:81675991-81676010 None:intergenic 15.0%
!!! CTTGATCAATAAAAATATTT+TGG - chr8_1:81676121-81676140 None:intergenic 15.0%
!!! CAAAATATTTTTATTGATCA+AGG + chr8_1:81676119-81676138 Msa1219000:intron 15.0%
!! AAAAAATTATCTACATAATC+AGG - chr8_1:81677132-81677151 None:intergenic 15.0%
!! ATAATATTTGATATATTGAG+GGG + chr8_1:81677305-81677324 Msa1219000:intron 15.0%
!! AGATATCAAGATAATAAATA+AGG - chr8_1:81677838-81677857 None:intergenic 15.0%
!!! AAAGGACAATATTTTAAAAA+TGG - chr8_1:81677863-81677882 None:intergenic 15.0%
!!! ATGCTATCATTATTTTAAAA+AGG - chr8_1:81677881-81677900 None:intergenic 15.0%
!! GATTATTTGACAATAAATAT+AGG + chr8_1:81678385-81678404 Msa1219000:intron 15.0%
!! AAATAAATTCAGAAATTCAT+GGG - chr8_1:81679136-81679155 None:intergenic 15.0%
!! TAAATAAATTCAGAAATTCA+TGG - chr8_1:81679137-81679156 None:intergenic 15.0%
!! TAAGATTTATGAAATTTCAA+TGG - chr8_1:81679230-81679249 None:intergenic 15.0%
!! GTAATGTACTTAATTTATTA+TGG + chr8_1:81679633-81679652 Msa1219000:intron 15.0%
!!! AATTTTCGTTTTGAAATTAA+AGG + chr8_1:81680595-81680614 Msa1219000:intron 15.0%
!! AAAATTAACAAACAAAAAGG+AGG - chr8_1:81675494-81675513 None:intergenic 20.0%
!! TTGAAAATATGTTCAAAGTT+AGG + chr8_1:81675561-81675580 Msa1219000:intron 20.0%
!! TGAAAATATGTTCAAAGTTA+GGG + chr8_1:81675562-81675581 Msa1219000:intron 20.0%
!!! TTAAAGCTAGTTTAGAAATA+TGG + chr8_1:81675914-81675933 Msa1219000:intron 20.0%
!!! GCTATATATTGTATTTGTTA+TGG + chr8_1:81676869-81676888 Msa1219000:intron 20.0%
!! GGTTTATTACTATATTTATC+AGG + chr8_1:81676905-81676924 Msa1219000:intron 20.0%
!!! TTTTATACTAACTGTATGTT+TGG - chr8_1:81677219-81677238 None:intergenic 20.0%
!! AAACATACAGTTAGTATAAA+AGG + chr8_1:81677218-81677237 Msa1219000:intron 20.0%
!! CGTTAAATTTACTCAAATTA+TGG - chr8_1:81678106-81678125 None:intergenic 20.0%
!! TTTATTGTCAAATAATCTAG+TGG - chr8_1:81678382-81678401 None:intergenic 20.0%
!! AAAAAAAAAGTAATCAAGCA+AGG + chr8_1:81678842-81678861 Msa1219000:intron 20.0%
!!! AAATTTCAATGGATTATGTA+TGG - chr8_1:81679219-81679238 None:intergenic 20.0%
!!! GTAATTTTATATCTATGTCT+TGG - chr8_1:81679308-81679327 None:intergenic 20.0%
!! TTTCATCTTAAACTAGTTAA+TGG - chr8_1:81679958-81679977 None:intergenic 20.0%
!! AATTACTCAAATCACTAATA+TGG - chr8_1:81680074-81680093 None:intergenic 20.0%
!! TATTAGTGATTTGAGTAATT+CGG + chr8_1:81680074-81680093 Msa1219000:intron 20.0%
!! TCAAAACGTAAATTACAATA+AGG - chr8_1:81680649-81680668 None:intergenic 20.0%
!!! AATTTACGTTTTGAAATTAG+AGG + chr8_1:81680655-81680674 Msa1219000:CDS 20.0%
!! ATTATACAAACATCTACTTA+TGG + chr8_1:81680707-81680726 Msa1219000:CDS 20.0%
!! ATCATGGTAAAGTTAAAATA+TGG + chr8_1:81681176-81681195 Msa1219000:CDS 20.0%
!! TCATGGTAAAGTTAAAATAT+GGG + chr8_1:81681177-81681196 Msa1219000:CDS 20.0%
! AAGATTTCGAAATTCGAATT+CGG - chr8_1:81675031-81675050 None:intergenic 25.0%
!!! ATTTTTGTAAATCTGGTTTC+TGG + chr8_1:81675458-81675477 Msa1219000:intron 25.0%
!! TTGAAAAGCTGATTTAAGTT+AGG + chr8_1:81675631-81675650 Msa1219000:intron 25.0%
!! CATATGTATTTCTTTTCTTC+TGG + chr8_1:81675779-81675798 Msa1219000:intron 25.0%
! GCAAATCAAAATTCAAAAGA+AGG - chr8_1:81676172-81676191 None:intergenic 25.0%
!! TAGTTTGGATTACTTGATTT+TGG + chr8_1:81676282-81676301 Msa1219000:intron 25.0%
! AAAAAACTCCAACACATAAA+TGG + chr8_1:81676364-81676383 Msa1219000:intron 25.0%
!!! CTTCTTACACAAACTTTTTT+AGG + chr8_1:81676508-81676527 Msa1219000:intron 25.0%
!!! AAACTTTTTTAGGAGGATTT+GGG + chr8_1:81676518-81676537 Msa1219000:intron 25.0%
! ATACAGTTAGTATAAAAGGA+AGG + chr8_1:81677222-81677241 Msa1219000:intron 25.0%
! ACTATAGTTGTGATGATAAA+AGG + chr8_1:81677269-81677288 Msa1219000:intron 25.0%
!!! TAATCACTTTTACACTAGTA+TGG - chr8_1:81677532-81677551 None:intergenic 25.0%
! ATGATTAACATATCAACCTT+AGG + chr8_1:81677619-81677638 Msa1219000:intron 25.0%
! TGATTAACATATCAACCTTA+GGG + chr8_1:81677620-81677639 Msa1219000:intron 25.0%
!!! TTTATTTTATCCTATCCCTT+TGG - chr8_1:81677722-81677741 None:intergenic 25.0%
! AATTTACTCAAATTATGGTC+AGG - chr8_1:81678101-81678120 None:intergenic 25.0%
! ACATTTATCTAATGTGATGT+CGG + chr8_1:81678192-81678211 Msa1219000:intron 25.0%
! ATATCTTAAGGTGAATAAGT+GGG - chr8_1:81678349-81678368 None:intergenic 25.0%
! TGTTGTAGATAAACTAAACT+AGG + chr8_1:81679559-81679578 Msa1219000:intron 25.0%
! GTTGTAGATAAACTAAACTA+GGG + chr8_1:81679560-81679579 Msa1219000:intron 25.0%
! TGTCCATATCCATAAAATAA+TGG + chr8_1:81679694-81679713 Msa1219000:intron 25.0%
! GTCCATATCCATAAAATAAT+GGG + chr8_1:81679695-81679714 Msa1219000:intron 25.0%
!!! TACCCATTATTTTATGGATA+TGG - chr8_1:81679700-81679719 None:intergenic 25.0%
!!! TTTGACTACCCATTATTTTA+TGG - chr8_1:81679706-81679725 None:intergenic 25.0%
!! ATTTTACCTACGAGTATATT+CGG + chr8_1:81679761-81679780 Msa1219000:intron 25.0%
! ATTGATGTTATTGCTATAGA+GGG - chr8_1:81679912-81679931 None:intergenic 25.0%
! TATTGATGTTATTGCTATAG+AGG - chr8_1:81679913-81679932 None:intergenic 25.0%
!!! TCCATATTAGTTTTTGTTTG+AGG + chr8_1:81680038-81680057 Msa1219000:intron 25.0%
! TCCTCAAACAAAAACTAATA+TGG - chr8_1:81680042-81680061 None:intergenic 25.0%
!! TATTTCCTCTATGCATATTT+TGG + chr8_1:81680190-81680209 Msa1219000:intron 25.0%
!! ATTTCCTCTATGCATATTTT+GGG + chr8_1:81680191-81680210 Msa1219000:intron 25.0%
! ATTTGAATGATCAATTCATG+AGG - chr8_1:81680351-81680370 None:intergenic 25.0%
!! TAGATTTTGAACCATTACTA+AGG + chr8_1:81680546-81680565 Msa1219000:intron 25.0%
! TCTCATTGAAAGATAATACA+TGG + chr8_1:81680903-81680922 Msa1219000:CDS 25.0%
!!! TATTGTTGTCTTTGATTTGA+TGG + chr8_1:81681051-81681070 Msa1219000:CDS 25.0%
AAAAGATTTGTGTTTCAACG+AGG - chr8_1:81674868-81674887 None:intergenic 30.0%
TTGAAAGATGAAGTTAACAG+AGG + chr8_1:81675083-81675102 Msa1219000:exon 30.0%
ATTGAATTTGAAGAAGCAAG+TGG + chr8_1:81675107-81675126 Msa1219000:CDS 30.0%
! CTGATTTAAGTTAGGACTTA+GGG + chr8_1:81675639-81675658 Msa1219000:intron 30.0%
TATCACAATTCACAAACAAC+TGG - chr8_1:81675737-81675756 None:intergenic 30.0%
AAAAGTAGACTGATTGTAGT+AGG - chr8_1:81676038-81676057 None:intergenic 30.0%
TCGTCGTATTAAACATACAA+TGG - chr8_1:81676094-81676113 None:intergenic 30.0%
!!! ATTTTGATTTGCGCATTGAT+TGG + chr8_1:81676180-81676199 Msa1219000:intron 30.0%
ATGCTAACAGTTGCTAATAT+TGG + chr8_1:81676220-81676239 Msa1219000:intron 30.0%
!! TTTTGAGGGAATTTATGTGT+TGG - chr8_1:81676333-81676352 None:intergenic 30.0%
ATAACCAAAATTTGTGTGAC+TGG - chr8_1:81676404-81676423 None:intergenic 30.0%
!! AAGAAGTACTCAAATGCAAA+AGG - chr8_1:81676491-81676510 None:intergenic 30.0%
!!! CTTACACAAACTTTTTTAGG+AGG + chr8_1:81676511-81676530 Msa1219000:intron 30.0%
!!! CAAACTTTTTTAGGAGGATT+TGG + chr8_1:81676517-81676536 Msa1219000:intron 30.0%
TATCAACACATTTCAGAGAA+GGG + chr8_1:81676819-81676838 Msa1219000:intron 30.0%
!! TATTGTATTTGTTATGGTGC+AGG + chr8_1:81676875-81676894 Msa1219000:intron 30.0%
CAATAGTTGGCTAAATTATG+TGG + chr8_1:81676940-81676959 Msa1219000:intron 30.0%
GATGATAAAAGGTTGTAAAC+TGG + chr8_1:81677280-81677299 Msa1219000:intron 30.0%
TTTCCACTAGGTTCTTTAAA+AGG + chr8_1:81677356-81677375 Msa1219000:intron 30.0%
!! TTTCCTTTTAAAGAACCTAG+TGG - chr8_1:81677362-81677381 None:intergenic 30.0%
CTATATCAAAGTTAACGCAT+TGG - chr8_1:81677391-81677410 None:intergenic 30.0%
AAGAAAAAAATTGCCTCGAT+TGG + chr8_1:81677446-81677465 Msa1219000:intron 30.0%
TTCGTAAAAGACTTGGAATT+TGG - chr8_1:81677499-81677518 None:intergenic 30.0%
AAGATAGTTCGTAAAAGACT+TGG - chr8_1:81677506-81677525 None:intergenic 30.0%
ATCAAACATGAGATTTAAGC+AGG - chr8_1:81677696-81677715 None:intergenic 30.0%
GTCAGGATATCATAGAAAAA+TGG - chr8_1:81677745-81677764 None:intergenic 30.0%
AGAAATTACAAAGGAAAGTC+AGG - chr8_1:81677762-81677781 None:intergenic 30.0%
GATAGAGATAGGATATGATA+AGG - chr8_1:81678046-81678065 None:intergenic 30.0%
ATATAAAGCTGGATAGAGAT+AGG - chr8_1:81678057-81678076 None:intergenic 30.0%
TATCTTAAGGTGAATAAGTG+GGG - chr8_1:81678348-81678367 None:intergenic 30.0%
CATATCTTAAGGTGAATAAG+TGG - chr8_1:81678350-81678369 None:intergenic 30.0%
GGCTAAACATTCATATCTTA+AGG - chr8_1:81678361-81678380 None:intergenic 30.0%
!!! TGAGAGTGAACATTTTTTGT+TGG - chr8_1:81678426-81678445 None:intergenic 30.0%
!!! CATGGTTATTTTGGAAAGTT+TGG - chr8_1:81678450-81678469 None:intergenic 30.0%
!! GTATTTTGGAAAATCTGGTT+AGG + chr8_1:81678695-81678714 Msa1219000:intron 30.0%
TTATACTAACCCAAAGTAGT+TGG - chr8_1:81678947-81678966 None:intergenic 30.0%
!! AACTACTTTGGGTTAGTATA+AGG + chr8_1:81678946-81678965 Msa1219000:intron 30.0%
ACATTGACATCTCTAATTAG+AGG - chr8_1:81678982-81679001 None:intergenic 30.0%
AAATGAGAAGAAGAAAACCT+AGG + chr8_1:81679494-81679513 Msa1219000:intron 30.0%
!! AATTTGTTGGATTAGAGGTA+GGG - chr8_1:81679804-81679823 None:intergenic 30.0%
!! TAATTTGTTGGATTAGAGGT+AGG - chr8_1:81679805-81679824 None:intergenic 30.0%
!! ACTCTAATTTGTTGGATTAG+AGG - chr8_1:81679809-81679828 None:intergenic 30.0%
! TTGACTAGACTCTAATTTGT+TGG - chr8_1:81679817-81679836 None:intergenic 30.0%
!!! CTTTTGAGCATTGATTTTCT+AGG + chr8_1:81680214-81680233 Msa1219000:intron 30.0%
TCGAATCCCTTGTAAAATTA+GGG + chr8_1:81680265-81680284 Msa1219000:CDS 30.0%
! CAGTAACCCTAATTTTACAA+GGG - chr8_1:81680274-81680293 None:intergenic 30.0%
TCAAATCCTACTGAAGTTAT+CGG + chr8_1:81680365-81680384 Msa1219000:intron 30.0%
AATGCAAAATTTGCAAAGTG+AGG - chr8_1:81680451-81680470 None:intergenic 30.0%
! ATTTTGAACCATTACTAAGG+AGG + chr8_1:81680549-81680568 Msa1219000:intron 30.0%
AAAATTCACCTCCTTAGTAA+TGG - chr8_1:81680560-81680579 None:intergenic 30.0%
TCAAAACGAAAATTAGAACG+TGG - chr8_1:81680589-81680608 None:intergenic 30.0%
TATGGGATTATTCATCACAT+TGG + chr8_1:81680873-81680892 Msa1219000:CDS 30.0%
ATGGGATTATTCATCACATT+GGG + chr8_1:81680874-81680893 Msa1219000:CDS 30.0%
AATACATGGAAACAGATTGA+AGG + chr8_1:81680917-81680936 Msa1219000:CDS 30.0%
AGTGAAATCACTCTTGTAAA+GGG - chr8_1:81680951-81680970 None:intergenic 30.0%
ATTTCACTCAACACAAAGTA+GGG + chr8_1:81680963-81680982 Msa1219000:CDS 30.0%
TCTTTAGTGAAGCTATTCAT+TGG + chr8_1:81680990-81681009 Msa1219000:CDS 30.0%
!! TTGTCTTTGATTTGATGGAA+AGG + chr8_1:81681056-81681075 Msa1219000:CDS 30.0%
! TATTGTCGTTTGTGGTTATT+TGG + chr8_1:81681127-81681146 Msa1219000:CDS 30.0%
GAATACAAAGTGCATTTACT+TGG + chr8_1:81681208-81681227 Msa1219000:CDS 30.0%
!!! TGAGGTTATTGTTTTGAGTG+AGG + chr8_1:81675137-81675156 Msa1219000:CDS 35.0%
TCAGTTGAAGAAGTAGTTGA+TGG + chr8_1:81675177-81675196 Msa1219000:CDS 35.0%
! GTATGATGATGAAGACAATG+AGG + chr8_1:81675230-81675249 Msa1219000:CDS 35.0%
! GCTGATTTAAGTTAGGACTT+AGG + chr8_1:81675638-81675657 Msa1219000:intron 35.0%
AATCCAAACTATCCCAACAA+AGG - chr8_1:81676273-81676292 None:intergenic 35.0%
AAAGATGGCCATTTATGTGT+TGG - chr8_1:81676375-81676394 None:intergenic 35.0%
GACTAACTCTATCGTTTAGA+GGG - chr8_1:81676773-81676792 None:intergenic 35.0%
CTATCAACACATTTCAGAGA+AGG + chr8_1:81676818-81676837 Msa1219000:intron 35.0%
AGAAGGGATACATTAGTTCA+TGG + chr8_1:81676835-81676854 Msa1219000:intron 35.0%
! TGTTATGGTGCAGGATTTTT+AGG + chr8_1:81676884-81676903 Msa1219000:intron 35.0%
AGTTGGCTAAATTATGTGGT+AGG + chr8_1:81676944-81676963 Msa1219000:intron 35.0%
TTCTGCTGCTATGAAAATGT+TGG + chr8_1:81677036-81677055 Msa1219000:intron 35.0%
! TGTATGTTTGGTTCAACCTT+TGG - chr8_1:81677207-81677226 None:intergenic 35.0%
GATATATTGAGGGGTAAGTT+TGG + chr8_1:81677314-81677333 Msa1219000:intron 35.0%
! TTTCTGTGATCTTTTCCACT+AGG + chr8_1:81677344-81677363 Msa1219000:intron 35.0%
ACGCAGGATAGAAATTACAA+AGG - chr8_1:81677771-81677790 None:intergenic 35.0%
GTAATTTCTATCCTGCGTAT+AGG + chr8_1:81677773-81677792 Msa1219000:intron 35.0%
! TGGGTTAGAAATTATCCTGA+TGG + chr8_1:81677797-81677816 Msa1219000:intron 35.0%
GGGTTAGAAATTATCCTGAT+GGG + chr8_1:81677798-81677817 Msa1219000:intron 35.0%
AATGATCTTCTAATCCCATC+AGG - chr8_1:81677815-81677834 None:intergenic 35.0%
GGCAAGATATGATATAAAGC+TGG - chr8_1:81678068-81678087 None:intergenic 35.0%
ACTCAAATTATGGTCAGGAT+AGG - chr8_1:81678096-81678115 None:intergenic 35.0%
ACACTCTATTTGCACAATTG+AGG - chr8_1:81678243-81678262 None:intergenic 35.0%
TAGTCTCTACGAGTTTAACT+CGG + chr8_1:81678270-81678289 Msa1219000:intron 35.0%
! GAGAGTGAACATGGTTATTT+TGG - chr8_1:81678459-81678478 None:intergenic 35.0%
!!! CAGGGTTATTTTGGAAAGTT+TGG - chr8_1:81678484-81678503 None:intergenic 35.0%
!!! TAACTCACACAAGGGTATTT+TGG + chr8_1:81678681-81678700 Msa1219000:intron 35.0%
!!! CAAGGGTATTTTGGAAAATC+TGG + chr8_1:81678690-81678709 Msa1219000:intron 35.0%
ACACATGAATCCAACTACTT+TGG + chr8_1:81678934-81678953 Msa1219000:intron 35.0%
CACATGAATCCAACTACTTT+GGG + chr8_1:81678935-81678954 Msa1219000:intron 35.0%
TATCATATTATCCGCACTCA+TGG - chr8_1:81679009-81679028 None:intergenic 35.0%
! CGGGTGTCATATTTATTCAA+CGG - chr8_1:81679044-81679063 None:intergenic 35.0%
CTTGTGAGCTATCTGTATAA+TGG - chr8_1:81679093-81679112 None:intergenic 35.0%
!! ACAAGTATTGAGGTATCCAT+GGG + chr8_1:81679108-81679127 Msa1219000:intron 35.0%
TTATGGGATACGTTTATCTG+TGG + chr8_1:81679650-81679669 Msa1219000:intron 35.0%
CAAATACCCGTTTAACTATC+CGG + chr8_1:81679722-81679741 Msa1219000:intron 35.0%
ATATGTCCGAATATACTCGT+AGG - chr8_1:81679770-81679789 None:intergenic 35.0%
! ATTTGTTGGATTAGAGGTAG+GGG - chr8_1:81679803-81679822 None:intergenic 35.0%
! ATTGCTATAGAGGGTATGAT+GGG - chr8_1:81679903-81679922 None:intergenic 35.0%
! TATTGCTATAGAGGGTATGA+TGG - chr8_1:81679904-81679923 None:intergenic 35.0%
AAAGCCCAAAATATGCATAG+AGG - chr8_1:81680198-81680217 None:intergenic 35.0%
CTCGAATCCCTTGTAAAATT+AGG + chr8_1:81680264-81680283 Msa1219000:CDS 35.0%
! CCAGTAACCCTAATTTTACA+AGG - chr8_1:81680275-81680294 None:intergenic 35.0%
CCTTGTAAAATTAGGGTTAC+TGG + chr8_1:81680272-81680291 Msa1219000:CDS 35.0%
TACAATAAGGAATCCGATGA+AGG - chr8_1:81680636-81680655 None:intergenic 35.0%
TATTTGTATGCGAAATCCAG+TGG - chr8_1:81680740-81680759 None:intergenic 35.0%
TGGAGGAACAAAAAAAAGAC+AGG - chr8_1:81680763-81680782 None:intergenic 35.0%
CAAAACCATACATAAGACCA+GGG - chr8_1:81680802-81680821 None:intergenic 35.0%
TTTCATTGTGCTGTGATCTA+TGG + chr8_1:81680855-81680874 Msa1219000:CDS 35.0%
TTCATTGTGCTGTGATCTAT+GGG + chr8_1:81680856-81680875 Msa1219000:CDS 35.0%
GAGTGAAATCACTCTTGTAA+AGG - chr8_1:81680952-81680971 None:intergenic 35.0%
GATTTCACTCAACACAAAGT+AGG + chr8_1:81680962-81680981 Msa1219000:CDS 35.0%
TAGTGAAGCTATTCATTGGT+TGG + chr8_1:81680994-81681013 Msa1219000:CDS 35.0%
! TACTTGGATATTGTCGTTTG+TGG + chr8_1:81681119-81681138 Msa1219000:CDS 35.0%
AGTCTATGCGAGAATAATCA+TGG + chr8_1:81681160-81681179 Msa1219000:CDS 35.0%
TCGATGACGTGGAAATGTAT+CGG - chr8_1:81674903-81674922 None:intergenic 40.0%
TGCGTGAATTCTCGTTTCAA+CGG + chr8_1:81674925-81674944 Msa1219000:five_prime_UTR 40.0%
GAATTTGAAGAAGCAAGTGG+AGG + chr8_1:81675110-81675129 Msa1219000:CDS 40.0%
GAAGACAGTGAAGATGATGA+AGG + chr8_1:81675201-81675220 Msa1219000:CDS 40.0%
! TGATGATGAAGACAATGAGG+AGG + chr8_1:81675233-81675252 Msa1219000:CDS 40.0%
TGATGACAGTGACAATGATG+AGG + chr8_1:81675368-81675387 Msa1219000:CDS 40.0%
! TCCTTTTCACGTTCCTTTGT+TGG + chr8_1:81676257-81676276 Msa1219000:intron 40.0%
! CCTTTTCACGTTCCTTTGTT+GGG + chr8_1:81676258-81676277 Msa1219000:intron 40.0%
GTTCCTTTGTTGGGATAGTT+TGG + chr8_1:81676267-81676286 Msa1219000:intron 40.0%
! GTAGCCAGTCACACAAATTT+TGG + chr8_1:81676397-81676416 Msa1219000:intron 40.0%
ATCTAGTGACTTTGAACCTG+TGG + chr8_1:81676589-81676608 Msa1219000:CDS 40.0%
GACTTTGAACCTGTGGAAAA+TGG + chr8_1:81676596-81676615 Msa1219000:CDS 40.0%
TTGTCTGACCTCTTTCTCTT+TGG - chr8_1:81676707-81676726 None:intergenic 40.0%
GGACTAACTCTATCGTTTAG+AGG - chr8_1:81676774-81676793 None:intergenic 40.0%
AGAGTTAGTCCATTCTTTGC+TGG + chr8_1:81676783-81676802 Msa1219000:intron 40.0%
! ACTAGTTCTCCAGCAAAGAA+TGG - chr8_1:81676795-81676814 None:intergenic 40.0%
GCAAGTGCATAGTCAATAGT+TGG + chr8_1:81676927-81676946 Msa1219000:intron 40.0%
GAACATCATCTACCATCCTA+GGG - chr8_1:81677008-81677027 None:intergenic 40.0%
TGAACATCATCTACCATCCT+AGG - chr8_1:81677009-81677028 None:intergenic 40.0%
CAGTATGTTTACTCCTCCAA+AGG + chr8_1:81677188-81677207 Msa1219000:intron 40.0%
! ATGTTTGGTTCAACCTTTGG+AGG - chr8_1:81677204-81677223 None:intergenic 40.0%
AAAAAATTGCCTCGATTGGC+TGG + chr8_1:81677450-81677469 Msa1219000:intron 40.0%
TCTCTATCCTGACCATCAAA+CGG - chr8_1:81677647-81677666 None:intergenic 40.0%
TCTCATGTTTGATGCACCAA+AGG + chr8_1:81677703-81677722 Msa1219000:intron 40.0%
CTCATGTTTGATGCACCAAA+GGG + chr8_1:81677704-81677723 Msa1219000:intron 40.0%
TTATGGTCAGGATAGGATAG+AGG - chr8_1:81678089-81678108 None:intergenic 40.0%
AGTTTGGTTGAGAGTGAACA+TGG - chr8_1:81678434-81678453 None:intergenic 40.0%
! TAACTCACGCAGGGTTATTT+TGG - chr8_1:81678493-81678512 None:intergenic 40.0%
CAACATGAGTTAACTCAAGC+GGG - chr8_1:81678622-81678641 None:intergenic 40.0%
GCAACATGAGTTAACTCAAG+CGG - chr8_1:81678623-81678642 None:intergenic 40.0%
TGTGTGAGTTAACTCACACA+AGG + chr8_1:81678672-81678691 Msa1219000:intron 40.0%
GTGTGAGTTAACTCACACAA+GGG + chr8_1:81678673-81678692 Msa1219000:intron 40.0%
TAGGAGCGAGCAAAATATGA+TGG + chr8_1:81678714-81678733 Msa1219000:intron 40.0%
AGGAGCGAGCAAAATATGAT+GGG + chr8_1:81678715-81678734 Msa1219000:intron 40.0%
TGTCAATGTTGCACAAGTCT+AGG - chr8_1:81678902-81678921 None:intergenic 40.0%
TCAATGTGTATCCATGAGTG+CGG + chr8_1:81678995-81679014 Msa1219000:intron 40.0%
AATGGATACCCACACGAATA+CGG - chr8_1:81679075-81679094 None:intergenic 40.0%
! CAGATAGCTCACAAGTATTG+AGG + chr8_1:81679098-81679117 Msa1219000:intron 40.0%
!! CACAAGTATTGAGGTATCCA+TGG + chr8_1:81679107-81679126 Msa1219000:intron 40.0%
TCGTGCGTTTCAATTTACGA+AGG + chr8_1:81679252-81679271 Msa1219000:intron 40.0%
AAAACCTAGGTGCACCAAAA+GGG + chr8_1:81679507-81679526 Msa1219000:intron 40.0%
! CACAGTTTTCTCATCCCTTT+TGG - chr8_1:81679524-81679543 None:intergenic 40.0%
TCGTAGGTAAAATCTGTCGT+GGG - chr8_1:81679754-81679773 None:intergenic 40.0%
ATTAGAACAGACTATCGACG+AGG - chr8_1:81679862-81679881 None:intergenic 40.0%
! TTGCTATAGAGGGTATGATG+GGG - chr8_1:81679902-81679921 None:intergenic 40.0%
GTTTCACCGATAACTTCAGT+AGG - chr8_1:81680374-81680393 None:intergenic 40.0%
ACACACTCGTATACTTCTCT+CGG + chr8_1:81680490-81680509 Msa1219000:intron 40.0%
GAAATTAGAGGTTCATGCAG+AGG + chr8_1:81680667-81680686 Msa1219000:CDS 40.0%
TACTTATGGAATCCATCCAC+TGG + chr8_1:81680721-81680740 Msa1219000:CDS 40.0%
!!! GTGATGGTCTTTTAAGTTGG+AGG - chr8_1:81680780-81680799 None:intergenic 40.0%
!! AGGGTGATGGTCTTTTAAGT+TGG - chr8_1:81680783-81680802 None:intergenic 40.0%
AACTTAAAAGACCATCACCC+TGG + chr8_1:81680782-81680801 Msa1219000:CDS 40.0%
CCAAAACCATACATAAGACC+AGG - chr8_1:81680803-81680822 None:intergenic 40.0%
!!! CCTGGTCTTATGTATGGTTT+TGG + chr8_1:81680800-81680819 Msa1219000:CDS 40.0%
CGTCTTCCAGATGATTATGA+CGG + chr8_1:81681094-81681113 Msa1219000:CDS 40.0%
AGTATGCCGTCATAATCATC+TGG - chr8_1:81681103-81681122 None:intergenic 40.0%
GATGATTATGACGGCATACT+TGG + chr8_1:81681103-81681122 Msa1219000:CDS 40.0%
GTGTTTCAACGAGGATAGTG+TGG - chr8_1:81674859-81674878 None:intergenic 45.0%
TGACGTGGAAATGTATCGGA+CGG - chr8_1:81674899-81674918 None:intergenic 45.0%
ACTGTGTTAGCGAAGAGAAG+AGG + chr8_1:81674968-81674987 Msa1219000:five_prime_UTR 45.0%
!! TTCGGTGTTGAAATCGAGCA+AGG - chr8_1:81675013-81675032 None:intergenic 45.0%
TGAAGACAATGAGGAGGATG+AGG + chr8_1:81675239-81675258 Msa1219000:CDS 45.0%
GAGGAGGATGAAGATGAAGA+AGG + chr8_1:81675300-81675319 Msa1219000:CDS 45.0%
GAGGATGAAGATGAAGAAGG+TGG + chr8_1:81675303-81675322 Msa1219000:CDS 45.0%
CTGTCATCATCATCGTCATC+AGG - chr8_1:81675357-81675376 None:intergenic 45.0%
CCCAACAAAGGAACGTGAAA+AGG - chr8_1:81676261-81676280 None:intergenic 45.0%
! TGTGACTGGCTACACAAAGA+TGG - chr8_1:81676390-81676409 None:intergenic 45.0%
TGAACCTGTGGAAAATGGTG+TGG + chr8_1:81676601-81676620 Msa1219000:CDS 45.0%
GATGAAGTGGAGGAAGATGA+AGG + chr8_1:81676629-81676648 Msa1219000:CDS 45.0%
GATGAAGGTGAGGAAGATGA+AGG + chr8_1:81676644-81676663 Msa1219000:CDS 45.0%
!! CAGTGATGATGATGGTGAGA+AGG + chr8_1:81676670-81676689 Msa1219000:CDS 45.0%
AGGTTCCACCAAAGAGAAAG+AGG + chr8_1:81676696-81676715 Msa1219000:CDS 45.0%
TCTGACCTCTTTCTCTTTGG+TGG - chr8_1:81676704-81676723 None:intergenic 45.0%
GATGATTCCGATGACGATGA+TGG + chr8_1:81676728-81676747 Msa1219000:CDS 45.0%
TTATCTTTCACCCACTCCCT+AGG + chr8_1:81676989-81677008 Msa1219000:intron 45.0%
! TCGTTGTTCTAAGTCGCACT+AGG + chr8_1:81677415-81677434 Msa1219000:intron 45.0%
GTTTGATGCACCAAAGGGAT+AGG + chr8_1:81677709-81677728 Msa1219000:intron 45.0%
TTTCTATCCTGCGTATAGGC+TGG + chr8_1:81677777-81677796 Msa1219000:intron 45.0%
TTCTATCCTGCGTATAGGCT+GGG + chr8_1:81677778-81677797 Msa1219000:intron 45.0%
ATGGATACCCACACGAATAC+GGG - chr8_1:81679074-81679093 None:intergenic 45.0%
CAGAAATTCATGGGTACCCA+TGG - chr8_1:81679127-81679146 None:intergenic 45.0%
GAAAACCTAGGTGCACCAAA+AGG + chr8_1:81679506-81679525 Msa1219000:intron 45.0%
GTAAAATCTGTCGTGGGTAC+GGG - chr8_1:81679748-81679767 None:intergenic 45.0%
GGTAAAATCTGTCGTGGGTA+CGG - chr8_1:81679749-81679768 None:intergenic 45.0%
CTCGTAGGTAAAATCTGTCG+TGG - chr8_1:81679755-81679774 None:intergenic 45.0%
! TGCTATAGAGGGTATGATGG+GGG - chr8_1:81679901-81679920 None:intergenic 45.0%
TACTGGAAGCAGAGTGAAGA+AGG + chr8_1:81680289-81680308 Msa1219000:CDS 45.0%
!! GTGAAGAAGGTGCTTGAGTA+TGG + chr8_1:81680302-81680321 Msa1219000:CDS 45.0%
TCAAGTGTGTCAGCAAGTCT+TGG + chr8_1:81680407-81680426 Msa1219000:intron 45.0%
! TATACGAGTGTGTGTTGCTG+GGG - chr8_1:81680483-81680502 None:intergenic 45.0%
! GTATACGAGTGTGTGTTGCT+GGG - chr8_1:81680484-81680503 None:intergenic 45.0%
AGTATACGAGTGTGTGTTGC+TGG - chr8_1:81680485-81680504 None:intergenic 45.0%
TGTATGCGAAATCCAGTGGA+TGG - chr8_1:81680736-81680755 None:intergenic 45.0%
CATACATAAGACCAGGGTGA+TGG - chr8_1:81680796-81680815 None:intergenic 45.0%
!! CATCACCCTGGTCTTATGTA+TGG + chr8_1:81680794-81680813 Msa1219000:CDS 45.0%
CCACGTAATCATCTCTTGAC+TGG - chr8_1:81680832-81680851 None:intergenic 45.0%
CCAGTCAAGAGATGATTACG+TGG + chr8_1:81680829-81680848 Msa1219000:CDS 45.0%
GTCAAGAGATGATTACGTGG+TGG + chr8_1:81680832-81680851 Msa1219000:CDS 45.0%
!!! TTTTTTTTTTTTTTTTTTGA+GGG - chr8_1:81676347-81676366 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+AGG - chr8_1:81676348-81676367 None:intergenic 5.0%
! GATAGTGTGGTTGAGCGTTG+CGG - chr8_1:81674846-81674865 None:intergenic 50.0%
ATTCACGCAGATCGATGACG+TGG - chr8_1:81674914-81674933 None:intergenic 50.0%
GAAGCAAGTGGAGGAAAGTG+AGG + chr8_1:81675119-81675138 Msa1219000:CDS 50.0%
GATGAGGATGACGACGATGA+AGG + chr8_1:81675255-81675274 Msa1219000:CDS 50.0%
! GATGACGACGATGAAGGTAC+TGG + chr8_1:81675261-81675280 Msa1219000:CDS 50.0%
GAAGAAGGTGGAACAGCTGA+AGG + chr8_1:81675315-81675334 Msa1219000:CDS 50.0%
! TCGTCCACACCATTTTCCAC+AGG - chr8_1:81676608-81676627 None:intergenic 50.0%
TGGTGTGGACGAAGATGAAG+TGG + chr8_1:81676616-81676635 Msa1219000:CDS 50.0%
TGTGGACGAAGATGAAGTGG+AGG + chr8_1:81676619-81676638 Msa1219000:CDS 50.0%
AGTGGAGGAAGATGAAGGTG+AGG + chr8_1:81676634-81676653 Msa1219000:CDS 50.0%
GAAGGTGAGGAAGATGAAGG+TGG + chr8_1:81676647-81676666 Msa1219000:CDS 50.0%
! GAAGGTGGCAGTGATGATGA+TGG + chr8_1:81676662-81676681 Msa1219000:CDS 50.0%
!! TGATGATGGTGAGAAGGCTG+AGG + chr8_1:81676676-81676695 Msa1219000:CDS 50.0%
! GATTCCGATGACGATGATGG+AGG + chr8_1:81676731-81676750 Msa1219000:CDS 50.0%
CTCTCCTCCATCATCGTCAT+CGG - chr8_1:81676738-81676757 None:intergenic 50.0%
CATCTACCATCCTAGGGAGT+GGG - chr8_1:81677002-81677021 None:intergenic 50.0%
TCATCTACCATCCTAGGGAG+TGG - chr8_1:81677003-81677022 None:intergenic 50.0%
CAACCTTAGGGTCCGTTTGA+TGG + chr8_1:81677632-81677651 Msa1219000:intron 50.0%
TGACCATCAAACGGACCCTA+AGG - chr8_1:81677638-81677657 None:intergenic 50.0%
! TTAGGGTCCGTTTGATGGTC+AGG + chr8_1:81677637-81677656 Msa1219000:intron 50.0%
GATGGTCAGGATAGAGAGAC+AGG + chr8_1:81677650-81677669 Msa1219000:intron 50.0%
TTCTAACCCAGCCTATACGC+AGG - chr8_1:81677787-81677806 None:intergenic 50.0%
AGCGTGAGTTAACTCACGCA+GGG - chr8_1:81678502-81678521 None:intergenic 50.0%
TGCGTGAGTTAACTCACGCT+GGG + chr8_1:81678502-81678521 Msa1219000:intron 50.0%
CGTGAGTTAACTCAAGCGTG+TGG - chr8_1:81678532-81678551 None:intergenic 50.0%
ACGCTTGAGTTAACTCACGC+AGG + chr8_1:81678533-81678552 Msa1219000:intron 50.0%
TCGCTTGAGTTAACTCACGC+AGG + chr8_1:81678576-81678595 Msa1219000:intron 50.0%
ACACGAATACGGGACAGTCA+CGG - chr8_1:81679064-81679083 None:intergenic 50.0%
TGACTGTCCCGTATTCGTGT+GGG + chr8_1:81679064-81679083 Msa1219000:intron 50.0%
!! TCATCCCTTTTGGTGCACCT+AGG - chr8_1:81679514-81679533 None:intergenic 50.0%
TACGGGCCGGATAGTTAAAC+GGG - chr8_1:81679731-81679750 None:intergenic 50.0%
GTACGGGCCGGATAGTTAAA+CGG - chr8_1:81679732-81679751 None:intergenic 50.0%
! TGTTGGATTAGAGGTAGGGG+TGG - chr8_1:81679800-81679819 None:intergenic 50.0%
GTAACGACGTGCACCTTCAT+CGG + chr8_1:81680620-81680639 Msa1219000:CDS 50.0%
TACAGCTCATAAGACCCGTG+CGG - chr8_1:81681277-81681296 None:intergenic 50.0%
!! GACGACGATGAAGGTACTGG+CGG + chr8_1:81675264-81675283 Msa1219000:CDS 55.0%
! TGGCGGTGGTGATGAAGATG+AGG + chr8_1:81675281-81675300 Msa1219000:CDS 55.0%
! CGGTGGTGATGAAGATGAGG+AGG + chr8_1:81675284-81675303 Msa1219000:CDS 55.0%
GGATGACGATGAAGACGACG+AGG + chr8_1:81675389-81675408 Msa1219000:CDS 55.0%
AGACGACGAGGACGATGATG+AGG + chr8_1:81675401-81675420 Msa1219000:CDS 55.0%
CGATGATGAGGAGGAGAACG+AGG + chr8_1:81675413-81675432 Msa1219000:CDS 55.0%
TGAGGAGGAGAACGAGGAAG+AGG + chr8_1:81675419-81675438 Msa1219000:CDS 55.0%
GGAGAACGAGGAAGAGGAAC+AGG + chr8_1:81675425-81675444 Msa1219000:CDS 55.0%
GAGTATCTTGTCCGCCCTCT+AGG + chr8_1:81676545-81676564 Msa1219000:CDS 55.0%
!! CGATGACGATGATGGAGGAG+AGG + chr8_1:81676736-81676755 Msa1219000:CDS 55.0%
CTTTCACCCACTCCCTAGGA+TGG + chr8_1:81676993-81677012 Msa1219000:intron 55.0%
! GCTGGACGCATGGACTGTTA+AGG + chr8_1:81677468-81677487 Msa1219000:intron 55.0%
CAGCGTGAGTTAACTCACGC+AGG - chr8_1:81678503-81678522 None:intergenic 55.0%
CTGCGTGAGTTAACTCACGC+TGG + chr8_1:81678501-81678520 Msa1219000:intron 55.0%
CACGAATACGGGACAGTCAC+GGG - chr8_1:81679063-81679082 None:intergenic 55.0%
GTGACTGTCCCGTATTCGTG+TGG + chr8_1:81679063-81679082 Msa1219000:intron 55.0%
!! GACGATGAAGGTACTGGCGG+TGG + chr8_1:81675267-81675286 Msa1219000:CDS 60.0%
! GGAACAGCTGAAGGTGCACG+TGG + chr8_1:81675324-81675343 Msa1219000:CDS 60.0%
! ACAGCTGAAGGTGCACGTGG+TGG + chr8_1:81675327-81675346 Msa1219000:CDS 60.0%
CGACGAGGACGATGATGAGG+AGG + chr8_1:81675404-81675423 Msa1219000:CDS 60.0%
CCTCCTCAGCAGCACCTAGA+GGG - chr8_1:81676562-81676581 None:intergenic 60.0%
TCCTCCTCAGCAGCACCTAG+AGG - chr8_1:81676563-81676582 None:intergenic 60.0%
!! TCTAGGTGCTGCTGAGGAGG+AGG + chr8_1:81676562-81676581 Msa1219000:CDS 60.0%
TCCATGCGTCCAGCCAATCG+AGG - chr8_1:81677462-81677481 None:intergenic 60.0%
AATCTGTCGTGGGTACGGGC+CGG - chr8_1:81679744-81679763 None:intergenic 60.0%
CCTCAGCAGCACCTAGAGGG+CGG - chr8_1:81676559-81676578 None:intergenic 65.0%
!! CCCTCTAGGTGCTGCTGAGG+AGG + chr8_1:81676559-81676578 Msa1219000:CDS 65.0%
! GCCTCGATTGGCTGGACGCA+TGG + chr8_1:81677458-81677477 Msa1219000:intron 65.0%
! TTGATGACCCGTGCGCCGCA+CGG + chr8_1:81681259-81681278 Msa1219000:CDS 65.0%
ATAAGACCCGTGCGGCGCAC+GGG - chr8_1:81681269-81681288 None:intergenic 65.0%
CATAAGACCCGTGCGGCGCA+CGG - chr8_1:81681270-81681289 None:intergenic 65.0%
!! CCGCCCTCTAGGTGCTGCTG+AGG + chr8_1:81676556-81676575 Msa1219000:CDS 70.0%
TGATGACCCGTGCGCCGCAC+GGG + chr8_1:81681260-81681279 Msa1219000:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 81674836 81681312 81674836 ID=Msa1219000;Name=Msa1219000
chr8_1 mRNA 81674836 81681312 81674836 ID=Msa1219000-mRNA-1;Parent=Msa1219000;Name=Msa1219000-mRNA-1;_AED=0.37;_eAED=0.37;_QI=254|0.33|0.25|0.5|1|1|4|0|463
chr8_1 exon 81674836 81675446 81674836 ID=Msa1219000-mRNA-1:exon:28922;Parent=Msa1219000-mRNA-1
chr8_1 exon 81676530 81676763 81676530 ID=Msa1219000-mRNA-1:exon:28923;Parent=Msa1219000-mRNA-1
chr8_1 exon 81680236 81680340 81680236 ID=Msa1219000-mRNA-1:exon:28924;Parent=Msa1219000-mRNA-1
chr8_1 exon 81680617 81681312 81680617 ID=Msa1219000-mRNA-1:exon:28925;Parent=Msa1219000-mRNA-1
chr8_1 five_prime_UTR 81674836 81675089 81674836 ID=Msa1219000-mRNA-1:five_prime_utr;Parent=Msa1219000-mRNA-1
chr8_1 CDS 81675090 81675446 81675090 ID=Msa1219000-mRNA-1:cds;Parent=Msa1219000-mRNA-1
chr8_1 CDS 81676530 81676763 81676530 ID=Msa1219000-mRNA-1:cds;Parent=Msa1219000-mRNA-1
chr8_1 CDS 81680236 81680340 81680236 ID=Msa1219000-mRNA-1:cds;Parent=Msa1219000-mRNA-1
chr8_1 CDS 81680617 81681312 81680617 ID=Msa1219000-mRNA-1:cds;Parent=Msa1219000-mRNA-1
Gene Sequence

>Msa1219000

ATGAAGTTAACAGAGGAATTGAATTTGAAGAAGCAAGTGGAGGAAAGTGAGGTTATTGTTTTGAGTGAGGATGATGAAGAAATTGAGTCAGTTGAAGAAGTAGTTGATGGAGAAGACAGTGAAGATGATGAAGGTGATGAGTATGATGATGAAGACAATGAGGAGGATGAGGATGACGACGATGAAGGTACTGGCGGTGGTGATGAAGATGAGGAGGATGAAGATGAAGAAGGTGGAACAGCTGAAGGTGCACGTGGTGGTGATCCTGATGACGATGATGATGACAGTGACAATGATGAGGATGACGATGAAGACGACGAGGACGATGATGAGGAGGAGAACGAGGAAGAGGAACAGGAGGATTTGGGAACAGAGTATCTTGTCCGCCCTCTAGGTGCTGCTGAGGAGGAGGAAGCATCTAGTGACTTTGAACCTGTGGAAAATGGTGTGGACGAAGATGAAGTGGAGGAAGATGAAGGTGAGGAAGATGAAGGTGGCAGTGATGATGATGGTGAGAAGGCTGAGGTTCCACCAAAGAGAAAGAGGTCAGACAAAGATGATTCCGATGACGATGATGGAGGAGAGGATGATGTTAGATATAACACTGAGCGAGTGAAGTCTCGAATCCCTTGTAAAATTAGGGTTACTGGAAGCAGAGTGAAGAAGGTGCTTGAGTATGGAGAAGAAGACAGTACTGTAGTAACGACGTGCACCTTCATCGGATTCCTTATTGTAATTTACGTTTTGAAATTAGAGGTTCATGCAGAGGCTTTATACTTGTGTGCTATTATACAAACATCTACTTATGGAATCCATCCACTGGATTTCGCATACAAATACCTGTCTTTTTTTTGTTCCTCCAACTTAAAAGACCATCACCCTGGTCTTATGTATGGTTTTGGTTACGACCAGTCAAGAGATGATTACGTGGTGGTTTCATTGTGCTGTGATCTATGGGATTATTCATCACATTGGGAGTTTTTCTCATTGAAAGATAATACATGGAAACAGATTGAAGGTGAAAGCTCCCTTTACAAGAGTGATTTCACTCAACACAAAGTAGGGTTTCTCTTTAGTGAAGCTATTCATTGGTTGGTTTATAGTTTTGATTTTGATTTATCTATCTATCTTATTGTTGTCTTTGATTTGATGGAAAGGAAACTGTTAGAGATGCGTCTTCCAGATGATTATGACGGCATACTTGGATATTGTCGTTTGTGGTTATTTGGAGAATTTTTAAGTCTATGCGAGAATAATCATGGTAAAGTTAAAATATGGGTGATGAAAGAATACAAAGTGCATTTACTTGGACTAAGACTCTTATTATTCTTAACTAGATTGATGACCCGTGCGCCGCACGGGTCTTATGAGCTGTACTACATTCACTATTAG

Protein sequence

>Msa1219000

MKLTEELNLKKQVEESEVIVLSEDDEEIESVEEVVDGEDSEDDEGDEYDDEDNEEDEDDDDEGTGGGDEDEEDEDEEGGTAEGARGGDPDDDDDDSDNDEDDDEDDEDDDEEENEEEEQEDLGTEYLVRPLGAAEEEEASSDFEPVENGVDEDEVEEDEGEEDEGGSDDDGEKAEVPPKRKRSDKDDSDDDDGGEDDVRYNTERVKSRIPCKIRVTGSRVKKVLEYGEEDSTVVTTCTFIGFLIVIYVLKLEVHAEALYLCAIIQTSTYGIHPLDFAYKYLSFFCSSNLKDHHPGLMYGFGYDQSRDDYVVVSLCCDLWDYSSHWEFFSLKDNTWKQIEGESSLYKSDFTQHKVGFLFSEAIHWLVYSFDFDLSIYLIVVFDLMERKLLEMRLPDDYDGILGYCRLWLFGEFLSLCENNHGKVKIWVMKEYKVHLLGLRLLLFLTRLMTRAPHGSYELYYIHY*