AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1338250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1338250 MtrunA17_Chr6g0461901 97.861 187 4 0 1 187 1 187 1.51e-130 389
Msa1338250 MtrunA17_Chr7g0252281 65.079 189 63 2 1 186 3 191 2.91e-80 256
Msa1338250 MtrunA17_Chr2g0327571 33.019 106 69 1 84 187 81 186 2.17e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1338250 AT5G13950.1 49.468 188 93 1 1 186 1 188 3.91e-59 198
Msa1338250 AT5G13950.2 49.468 188 93 1 1 186 1 188 3.91e-59 198
Msa1338250 AT5G13950.4 49.468 188 93 1 1 186 1 188 3.91e-59 198
Msa1338250 AT5G13950.3 49.468 188 93 1 1 186 1 188 5.69e-59 198

Find 52 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGAGCTCTCATGTCATTT+TGG 0.259570 tig0001834:-14754 Msa1338250:intergenic
GAGACTTCAGATGCTGTTCC+TGG 0.270260 tig0001834:-15861 Msa1338250:intergenic
CAGAGGAGGAAACGATTAAA+TGG 0.271322 tig0001834:+14665 Msa1338250:CDS
AGTGCTTAGCAGGTTGTATA+TGG 0.289459 tig0001834:+14543 Msa1338250:intron
TGCTGAATTAACGAATTTAC+AGG 0.297316 tig0001834:+13219 Msa1338250:five_prime_UTR
TAGACCCAGATTCTTTCTTT+TGG 0.301992 tig0001834:-14729 Msa1338250:intergenic
TCCTGGCCAACAACTATATC+TGG 0.314691 tig0001834:-15844 Msa1338250:intergenic
TCCAAGTCAAATATTTCTTC+AGG 0.318953 tig0001834:-14914 Msa1338250:intergenic
CATTGTCGGTTATGGTTCTA+AGG 0.323501 tig0001834:+14694 Msa1338250:CDS
CAAGACCAAAAGAAAGAATC+TGG 0.334064 tig0001834:+14724 Msa1338250:CDS
ACTCTCTTCATTTCATTTCA+AGG 0.336202 tig0001834:+13038 Msa1338250:five_prime_UTR
TACAGATTAAACATAATTAC+TGG 0.339285 tig0001834:+13176 Msa1338250:intron
GGGGCAAGCATTGTCGGTTA+TGG 0.361682 tig0001834:+14686 Msa1338250:CDS
GTTGCCAAACGGGAACAAAT+TGG 0.371457 tig0001834:+14812 Msa1338250:CDS
GATACCAATTTGTTCCCGTT+TGG 0.408361 tig0001834:-14816 Msa1338250:intergenic
GCTGGGACCGACTTTGACTT+TGG 0.413899 tig0001834:+15165 Msa1338250:CDS
CTTCATCCAGATATAGTTGT+TGG 0.425372 tig0001834:+15838 Msa1338250:CDS
GAAAAGAGTTGTTGCCAAAC+GGG 0.429452 tig0001834:+14802 Msa1338250:CDS
ACATTATTCCGTTGTGTCAA+TGG 0.431856 tig0001834:+14634 Msa1338250:exon
AGGGGTGCTTCAGTTTGTTC+TGG 0.434825 tig0001834:+15811 Msa1338250:intron
GAGTGAAGTGCTTTCATATG+AGG 0.436943 tig0001834:+14943 Msa1338250:CDS
AGCTCACATCTCTGTTGAAT+GGG 0.439397 tig0001834:+14769 Msa1338250:CDS
TCCAGATATAGTTGTTGGCC+AGG 0.441772 tig0001834:+15843 Msa1338250:CDS
TAGGGAGAAAATTCATAAGA+TGG 0.443486 tig0001834:-15104 Msa1338250:intergenic
GTGTTCCTTCAGTGCTTAGC+AGG 0.447554 tig0001834:+14533 Msa1338250:intron
TGATGTGGCTCTATGCCTCT+AGG 0.447848 tig0001834:-15123 Msa1338250:intergenic
AGAGGAGGAAACGATTAAAT+GGG 0.458882 tig0001834:+14666 Msa1338250:CDS
GAGCTCACATCTCTGTTGAA+TGG 0.464382 tig0001834:+14768 Msa1338250:CDS
ATGTCTTACCAATTCAAAAC+GGG 0.469187 tig0001834:-15192 Msa1338250:intergenic
GATGTCTTACCAATTCAAAA+CGG 0.471660 tig0001834:-15193 Msa1338250:intergenic
CTGTGGAAGATTTGCTAGCT+GGG 0.477005 tig0001834:+15148 Msa1338250:CDS
GCTGTGGAAGATTTGCTAGC+TGG 0.480854 tig0001834:+15147 Msa1338250:CDS
TTAAATGGGGCAAGCATTGT+CGG 0.484433 tig0001834:+14680 Msa1338250:CDS
AGAAAAGAGTTGTTGCCAAA+CGG 0.489512 tig0001834:+14801 Msa1338250:CDS
ACCTGAAGAAATATTTGACT+TGG 0.513763 tig0001834:+14913 Msa1338250:CDS
TTCTAGTGATCATAAAGTCT+TGG 0.516091 tig0001834:+14874 Msa1338250:CDS
AGGAAGAAGACGAAGAGAAG+AGG 0.519656 tig0001834:-12963 Msa1338250:intergenic
CTAGAAACATGATTGACAAA+CGG 0.530163 tig0001834:-14857 Msa1338250:intergenic
GGGAACAAATTGGTATCAGT+TGG 0.531579 tig0001834:+14822 Msa1338250:CDS
GATGTGGCTCTATGCCTCTA+GGG 0.554205 tig0001834:-15122 Msa1338250:intergenic
AGAGAAAGCGTTGCGTTGAG+AGG 0.555465 tig0001834:-12983 Msa1338250:intergenic
TTACTGGTAATTCTTTCACT+TGG 0.563497 tig0001834:+13192 Msa1338250:five_prime_UTR
GCAGGTTGTATATGGATGAA+AGG 0.576658 tig0001834:+14551 Msa1338250:five_prime_UTR
AAGACCAAAAGAAAGAATCT+GGG 0.610922 tig0001834:+14725 Msa1338250:CDS
AAATCTTCCACAGCTTGATG+TGG 0.618686 tig0001834:-15138 Msa1338250:intergenic
TGTCAATGGCTGCTGATCAG+AGG 0.624979 tig0001834:+14648 Msa1338250:exon
CAATGGCTGCTGATCAGAGG+AGG 0.628217 tig0001834:+14651 Msa1338250:exon
TCATAAAGTCTTGGCAGATG+TGG 0.640609 tig0001834:+14883 Msa1338250:CDS
ATCAGCAGCCATTGACACAA+CGG 0.641211 tig0001834:-14642 Msa1338250:intergenic
CATAGAGCCACATCAAGCTG+TGG 0.661529 tig0001834:+15131 Msa1338250:CDS
GAGGAGGAAACGATTAAATG+GGG 0.668628 tig0001834:+14667 Msa1338250:CDS
GGGACTTCCAAAGTCAAAGT+CGG 0.668788 tig0001834:-15172 Msa1338240:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTAAAAGATGATTTT+AGG - tig0001834:15033-15052 Msa1338250:intergenic 10.0%
!!! ATCATCTTTTAAAATATTTT+TGG + tig0001834:15036-15055 Msa1338250:intron 10.0%
!!! TTTAAAATATTTTTGGAAAT+TGG + tig0001834:15043-15062 Msa1338250:intron 10.0%
!! GGATTGAATTAAATAAAAAT+TGG - tig0001834:13086-13105 Msa1338250:intergenic 15.0%
!! GAATAATAAAAACGATAATT+AGG - tig0001834:13107-13126 Msa1338250:intergenic 15.0%
!!! AGTTTATGCTTATTTTTTAT+TGG + tig0001834:13905-13924 Msa1338250:intron 15.0%
!!! GTTTATGCTTATTTTTTATT+GGG + tig0001834:13906-13925 Msa1338250:intron 15.0%
!!! TAAAACTGTTATTTTTATGT+TGG + tig0001834:14075-14094 Msa1338250:intron 15.0%
!!! TTTTTTATCTTTCATACTTA+TGG + tig0001834:14107-14126 Msa1338250:intron 15.0%
!!! TTTTTATCTTTCATACTTAT+GGG + tig0001834:14108-14127 Msa1338250:intron 15.0%
!! TACTGAAAGTTATATTTATT+GGG + tig0001834:14247-14266 Msa1338250:intron 15.0%
!!! TAAAATTTGAAATTCAATCT+AGG + tig0001834:15409-15428 Msa1338250:intron 15.0%
!! TACAGATTAAACATAATTAC+TGG + tig0001834:13176-13195 Msa1338250:intron 20.0%
!!! TTTTTAATTTATTGTTTCGC+CGG + tig0001834:13260-13279 Msa1338250:intron 20.0%
!! TAAGCAAAACAATTCAAATA+AGG - tig0001834:13407-13426 Msa1338250:intergenic 20.0%
!!! TATTTGAATTGTTTTGCTTA+TGG + tig0001834:13407-13426 Msa1338250:intron 20.0%
!!! TATTTTTATGTTGGTTATCT+TGG + tig0001834:14084-14103 Msa1338250:intron 20.0%
!! CTACTGAAAGTTATATTTAT+TGG + tig0001834:14246-14265 Msa1338250:intron 20.0%
!! CGATTATTAGGTTATTATAT+TGG + tig0001834:14305-14324 Msa1338250:intron 20.0%
!! AAATAAAACAGCTTCATTAA+AGG - tig0001834:14417-14436 Msa1338250:intergenic 20.0%
!! AAAATAATATTCAACTTACC+TGG + tig0001834:14468-14487 Msa1338250:intron 20.0%
!!! TTAACTTATGATTAGCTTTT+GGG + tig0001834:15331-15350 Msa1338250:intron 20.0%
!! ATAAATGTAATTAGTAAAGC+TGG - tig0001834:15366-15385 Msa1338250:intergenic 20.0%
!!! TGAATTTCAAATTTTACCAA+CGG - tig0001834:15405-15424 Msa1338250:intergenic 20.0%
!! AAAGTTATTTATATGTTTGC+AGG + tig0001834:15791-15810 Msa1338250:intron 20.0%
!! AAGTTATTTATATGTTTGCA+GGG + tig0001834:15792-15811 Msa1338250:intron 20.0%
!! ATTTTTGCAAAATCAAATCG+AGG - tig0001834:13308-13327 Msa1338250:intergenic 25.0%
! TAATTAATACCTATCAAGCA+CGG + tig0001834:13529-13548 Msa1338250:intron 25.0%
! ATAATTGAACGTAATCACAT+GGG - tig0001834:13688-13707 Msa1338250:intergenic 25.0%
! TTTCTTAAATTACTACCTGT+CGG + tig0001834:13713-13732 Msa1338250:intron 25.0%
! TGTTAAAAGTAACTGATAAC+TGG + tig0001834:14132-14151 Msa1338250:intron 25.0%
!! ACAAGCATTTTCAGAATAAA+CGG - tig0001834:14204-14223 Msa1338250:intergenic 25.0%
! TGAAATGAATGTATAAAGAG+TGG - tig0001834:14333-14352 Msa1338250:intergenic 25.0%
! ACTCTTTATACATTCATTTC+AGG + tig0001834:14332-14351 Msa1338250:intron 25.0%
!!! AAATATTTTTGGAAATTGGC+AGG + tig0001834:15047-15066 Msa1338250:intron 25.0%
!!! GTTAACTTATGATTAGCTTT+TGG + tig0001834:15330-15349 Msa1338250:intron 25.0%
!! TCTCGATTTTATAACTTGAA+AGG + tig0001834:15496-15515 Msa1338250:intron 25.0%
!! CTCGATTTTATAACTTGAAA+GGG + tig0001834:15497-15516 Msa1338250:intron 25.0%
! AGCATAGAAACTAAGAAAAT+GGG - tig0001834:15540-15559 Msa1338250:intergenic 25.0%
! AAGCATAGAAACTAAGAAAA+TGG - tig0001834:15541-15560 Msa1338250:intergenic 25.0%
! AGTTATTTATATGTTTGCAG+GGG + tig0001834:15793-15812 Msa1338250:intron 25.0%
ACTCTCTTCATTTCATTTCA+AGG + tig0001834:13038-13057 Msa1338250:five_prime_UTR 30.0%
TTACTGGTAATTCTTTCACT+TGG + tig0001834:13192-13211 Msa1338250:five_prime_UTR 30.0%
TGCTGAATTAACGAATTTAC+AGG + tig0001834:13219-13238 Msa1338250:five_prime_UTR 30.0%
CATAATTGAACGTAATCACA+TGG - tig0001834:13689-13708 Msa1338250:intergenic 30.0%
AAGTAACTGATAACTGGATT+TGG + tig0001834:14138-14157 Msa1338250:intron 30.0%
TTGTGATTGTATCCAAACAA+AGG - tig0001834:14167-14186 Msa1338250:intergenic 30.0%
TTTCAGTAGCTAAATCTAAG+TGG - tig0001834:14235-14254 Msa1338250:intergenic 30.0%
TCATTAAAGGTTCAATCAAG+TGG - tig0001834:14404-14423 Msa1338250:intergenic 30.0%
! ATATAAAGATGCATTTTGCG+TGG + tig0001834:14443-14462 Msa1338250:intron 30.0%
AAGACCAAAAGAAAGAATCT+GGG + tig0001834:14725-14744 Msa1338250:CDS 30.0%
CTAGAAACATGATTGACAAA+CGG - tig0001834:14860-14879 Msa1338250:intergenic 30.0%
TTCTAGTGATCATAAAGTCT+TGG + tig0001834:14874-14893 Msa1338250:CDS 30.0%
ACCTGAAGAAATATTTGACT+TGG + tig0001834:14913-14932 Msa1338250:CDS 30.0%
TCCAAGTCAAATATTTCTTC+AGG - tig0001834:14917-14936 Msa1338250:intergenic 30.0%
ATATGAGGTAGATAAAACAG+TGG + tig0001834:14958-14977 Msa1338250:intron 30.0%
TAGGGAGAAAATTCATAAGA+TGG - tig0001834:15107-15126 Msa1338250:intergenic 30.0%
ATGTCTTACCAATTCAAAAC+GGG - tig0001834:15195-15214 Msa1338250:intergenic 30.0%
GATGTCTTACCAATTCAAAA+CGG - tig0001834:15196-15215 Msa1338250:intergenic 30.0%
! TCAAATTTTACCAACGGAAT+TGG - tig0001834:15399-15418 Msa1338250:intergenic 30.0%
!! CCATAACAAACAGTATTGAT+AGG - tig0001834:15608-15627 Msa1338250:intergenic 30.0%
! CCTATCAATACTGTTTGTTA+TGG + tig0001834:15605-15624 Msa1338250:intron 30.0%
TAATGCTTTGCTAACACTAA+AGG - tig0001834:15702-15721 Msa1338250:intergenic 30.0%
AAATCGAGGTTCTATCATCT+CGG - tig0001834:13294-13313 Msa1338250:intergenic 35.0%
TAAATTACATGTGCCAACGT+AGG + tig0001834:13747-13766 Msa1338250:intron 35.0%
TCAAATGGTAAAAAGCTGCA+AGG - tig0001834:14023-14042 Msa1338250:intergenic 35.0%
TCTTGTAAGTACAGCTCAAA+TGG - tig0001834:14038-14057 Msa1338250:intergenic 35.0%
! TGGATTTGGTTACCTTTGTT+TGG + tig0001834:14152-14171 Msa1338250:intron 35.0%
ATGTATGCTCTGCGATTATT+AGG + tig0001834:14293-14312 Msa1338250:intron 35.0%
TCACACATAGGATGAAGATA+AGG - tig0001834:14358-14377 Msa1338250:intergenic 35.0%
CAATCAAGTGGATCTCTATT+GGG - tig0001834:14392-14411 Msa1338250:intergenic 35.0%
TCAATCAAGTGGATCTCTAT+TGG - tig0001834:14393-14412 Msa1338250:intergenic 35.0%
TATTCAACTTACCTGGTCAT+TGG + tig0001834:14475-14494 Msa1338250:intron 35.0%
ACATTATTCCGTTGTGTCAA+TGG + tig0001834:14634-14653 Msa1338250:exon 35.0%
AGAGGAGGAAACGATTAAAT+GGG + tig0001834:14666-14685 Msa1338250:CDS 35.0%
CAAGACCAAAAGAAAGAATC+TGG + tig0001834:14724-14743 Msa1338250:CDS 35.0%
! TAGACCCAGATTCTTTCTTT+TGG - tig0001834:14732-14751 Msa1338250:intergenic 35.0%
AGAAAAGAGTTGTTGCCAAA+CGG + tig0001834:14801-14820 Msa1338250:CDS 35.0%
!!! AGCTCTATTTTTAACTCACC+AGG + tig0001834:15000-15019 Msa1338250:intron 35.0%
! ATGATTTTAGGCACAAATCC+TGG - tig0001834:15021-15040 Msa1338250:intergenic 35.0%
!! TTTTTGGAAATTGGCAGGTT+TGG + tig0001834:15052-15071 Msa1338250:intron 35.0%
! CTTATGAATTTTCTCCCTAG+AGG + tig0001834:15108-15127 Msa1338250:CDS 35.0%
! AATTTTACCAACGGAATTGG+TGG - tig0001834:15396-15415 Msa1338250:intergenic 35.0%
CAAAACGAAGACTAGATAAC+TGG - tig0001834:15461-15480 Msa1338250:intergenic 35.0%
! TAACTTGAAAGGGCATAGTT+TGG + tig0001834:15507-15526 Msa1338250:intron 35.0%
GTTTCTATGCTTGCAAGTTA+TGG + tig0001834:15549-15568 Msa1338250:intron 35.0%
GATAGGTAATCATAAACCAG+AGG - tig0001834:15591-15610 Msa1338250:intergenic 35.0%
CTTCATCCAGATATAGTTGT+TGG + tig0001834:15838-15857 Msa1338250:CDS 35.0%
AATCGAGGTTCTATCATCTC+GGG - tig0001834:13293-13312 Msa1338250:intergenic 40.0%
ACATGTACAAGCATAGACAC+TGG + tig0001834:13554-13573 Msa1338250:intron 40.0%
! ACACATTCGATCAGAAGTGT+TGG - tig0001834:13629-13648 Msa1338250:intergenic 40.0%
!! GTACACTTGGTGTTTAGAAG+TGG + tig0001834:13956-13975 Msa1338250:intron 40.0%
GTTTAGAAGTGGCCAATTGT+AGG + tig0001834:13967-13986 Msa1338250:intron 40.0%
GCAAGGACATTTGATAAGCT+CGG - tig0001834:14006-14025 Msa1338250:intergenic 40.0%
TCTTCATCCTATGTGTGACT+TGG + tig0001834:14360-14379 Msa1338250:intron 40.0%
CTTCATCCTATGTGTGACTT+GGG + tig0001834:14361-14380 Msa1338250:intron 40.0%
GAAAAACCCAAGTCACACAT+AGG - tig0001834:14370-14389 Msa1338250:intergenic 40.0%
AAGTCTAAGTTCCAATGACC+AGG - tig0001834:14489-14508 Msa1338250:intergenic 40.0%
AGTGCTTAGCAGGTTGTATA+TGG + tig0001834:14543-14562 Msa1338250:intron 40.0%
GCAGGTTGTATATGGATGAA+AGG + tig0001834:14551-14570 Msa1338250:five_prime_UTR 40.0%
CAGAGGAGGAAACGATTAAA+TGG + tig0001834:14665-14684 Msa1338250:CDS 40.0%
GAGGAGGAAACGATTAAATG+GGG + tig0001834:14667-14686 Msa1338250:CDS 40.0%
! TTAAATGGGGCAAGCATTGT+CGG + tig0001834:14680-14699 Msa1338250:CDS 40.0%
! CATTGTCGGTTATGGTTCTA+AGG + tig0001834:14694-14713 Msa1338250:CDS 40.0%
!! TGTGAGCTCTCATGTCATTT+TGG - tig0001834:14757-14776 Msa1338250:intergenic 40.0%
AGCTCACATCTCTGTTGAAT+GGG + tig0001834:14769-14788 Msa1338250:CDS 40.0%
! GTTTGGCAACAACTCTTTTC+TGG - tig0001834:14802-14821 Msa1338250:intergenic 40.0%
GAAAAGAGTTGTTGCCAAAC+GGG + tig0001834:14802-14821 Msa1338250:CDS 40.0%
! GATACCAATTTGTTCCCGTT+TGG - tig0001834:14819-14838 Msa1338250:intergenic 40.0%
GGGAACAAATTGGTATCAGT+TGG + tig0001834:14822-14841 Msa1338250:CDS 40.0%
TCATAAAGTCTTGGCAGATG+TGG + tig0001834:14883-14902 Msa1338250:CDS 40.0%
! GAGTGAAGTGCTTTCATATG+AGG + tig0001834:14943-14962 Msa1338250:CDS 40.0%
AAATCTTCCACAGCTTGATG+TGG - tig0001834:15141-15160 Msa1338250:intergenic 40.0%
!! TTGGAAGTCCCGTTTTGAAT+TGG + tig0001834:15184-15203 Msa1338250:CDS 40.0%
CTTATGTGTATATGCTCCTC+TGG + tig0001834:15572-15591 Msa1338250:intron 40.0%
AGGAAGAAGACGAAGAGAAG+AGG - tig0001834:12966-12985 Msa1455620:intergenic 45.0%
GGTTCTATCATCTCGGGATT+CGG - tig0001834:13287-13306 Msa1338250:intergenic 45.0%
TACATGTGTCCGTGCTTGAT+AGG - tig0001834:13541-13560 Msa1338250:intergenic 45.0%
!! GATCAGAAGTGTTGGTGTTG+TGG - tig0001834:13621-13640 Msa1338250:intergenic 45.0%
TGTTGGACATGGACATGTGT+CGG - tig0001834:13661-13680 Msa1338250:intergenic 45.0%
GTAATCACATGGGTCAGTGT+TGG - tig0001834:13678-13697 Msa1338250:intergenic 45.0%
!! TTTACCTATGAAGCACCGAC+AGG - tig0001834:13731-13750 Msa1338250:intergenic 45.0%
GCACATACACTTCTGATCGA+AGG - tig0001834:13791-13810 Msa1338250:intergenic 45.0%
TTGGGTTTCAAAGAGCCTAG+CGG + tig0001834:13924-13943 Msa1338250:intron 45.0%
CGCAGGTTCAAACCTACAAT+TGG - tig0001834:13982-14001 Msa1338250:intergenic 45.0%
GCAGAGCATACATCAGACAA+TGG - tig0001834:14286-14305 Msa1338250:intergenic 45.0%
!! TACAACCTGCTAAGCACTGA+AGG - tig0001834:14541-14560 Msa1338250:intergenic 45.0%
ATCAGCAGCCATTGACACAA+CGG - tig0001834:14645-14664 Msa1338250:intergenic 45.0%
GAGCTCACATCTCTGTTGAA+TGG + tig0001834:14768-14787 Msa1338250:CDS 45.0%
GTTGCCAAACGGGAACAAAT+TGG + tig0001834:14812-14831 Msa1338250:CDS 45.0%
!! CTGTGGAAGATTTGCTAGCT+GGG + tig0001834:15148-15167 Msa1338250:CDS 45.0%
GGGACTTCCAAAGTCAAAGT+CGG - tig0001834:15175-15194 Msa1338250:intergenic 45.0%
TCCAGATATAGTTGTTGGCC+AGG + tig0001834:15843-15862 Msa1338250:CDS 45.0%
TCCTGGCCAACAACTATATC+TGG - tig0001834:15847-15866 Msa1338250:intergenic 45.0%
!!! TTATTTTGATATTTTATTAT+TGG + tig0001834:13353-13372 Msa1338250:intron 5.0%
!! AGAGAAAGCGTTGCGTTGAG+AGG - tig0001834:12986-13005 Msa1455620:intergenic 50.0%
TATCATCTCGGGATTCGGAC+CGG - tig0001834:13282-13301 Msa1338250:intergenic 50.0%
!! CAGAAGTGTTGGTGTTGTGG+AGG - tig0001834:13618-13637 Msa1338250:intergenic 50.0%
! ACATGGGTCAGTGTTGGACA+TGG - tig0001834:13672-13691 Msa1338250:intergenic 50.0%
! ACTACCTGTCGGTGCTTCAT+AGG + tig0001834:13724-13743 Msa1338250:intron 50.0%
ACATGTGCCAACGTAGGTGT+TGG + tig0001834:13753-13772 Msa1338250:intron 50.0%
! CTTCTGATCGAAGGCGTATC+CGG - tig0001834:13782-13801 Msa1338250:intergenic 50.0%
CATTTGATAAGCTCGGACGC+AGG - tig0001834:13999-14018 Msa1338250:intergenic 50.0%
GTGTTCCTTCAGTGCTTAGC+AGG + tig0001834:14533-14552 Msa1338250:intron 50.0%
TGTCAATGGCTGCTGATCAG+AGG + tig0001834:14648-14667 Msa1338250:exon 50.0%
! GATGTGGCTCTATGCCTCTA+GGG - tig0001834:15125-15144 Msa1338250:intergenic 50.0%
! TGATGTGGCTCTATGCCTCT+AGG - tig0001834:15126-15145 Msa1338250:intergenic 50.0%
CATAGAGCCACATCAAGCTG+TGG + tig0001834:15131-15150 Msa1338250:CDS 50.0%
!! GCTGTGGAAGATTTGCTAGC+TGG + tig0001834:15147-15166 Msa1338250:CDS 50.0%
CGATCATCCACCAATTCCGT+TGG + tig0001834:15386-15405 Msa1338250:intron 50.0%
!! AGGGGTGCTTCAGTTTGTTC+TGG + tig0001834:15811-15830 Msa1338250:intron 50.0%
GAGACTTCAGATGCTGTTCC+TGG - tig0001834:15864-15883 Msa1338250:intergenic 50.0%
!! CCAACGTAGGTGTTGGACAC+CGG + tig0001834:13760-13779 Msa1338250:intron 55.0%
CAATGGCTGCTGATCAGAGG+AGG + tig0001834:14651-14670 Msa1338250:exon 55.0%
! GGGGCAAGCATTGTCGGTTA+TGG + tig0001834:14686-14705 Msa1338250:CDS 55.0%
! GCTGGGACCGACTTTGACTT+TGG + tig0001834:15165-15184 Msa1338250:CDS 55.0%
CCGGTGTCCAACACCTACGT+TGG - tig0001834:13763-13782 Msa1338250:intergenic 60.0%
GTGTACGTCAGTTCGCCGCT+AGG - tig0001834:13942-13961 Msa1338250:intergenic 60.0%
GCGGCGAACTGACGTACACT+TGG + tig0001834:13943-13962 Msa1338250:intron 60.0%
Chromosome Type Strat End Strand Name
tig0001834 gene 12935 15924 12935 ID=Msa1338250;Name=Msa1338250
tig0001834 mRNA 12935 15924 12935 ID=Msa1338250-mRNA-1;Parent=Msa1338250;Name=Msa1338250-mRNA-1;_AED=0.00;_eAED=0.00;_QI=293|1|0.8|1|0.5|0.4|5|0|187
tig0001834 exon 12935 13059 12935 ID=Msa1338250-mRNA-1:exon:1561;Parent=Msa1338250-mRNA-1
tig0001834 exon 13181 13240 13181 ID=Msa1338250-mRNA-1:exon:1562;Parent=Msa1338250-mRNA-1
tig0001834 exon 14545 14964 14545 ID=Msa1338250-mRNA-1:exon:1563;Parent=Msa1338250-mRNA-1
tig0001834 exon 15069 15205 15069 ID=Msa1338250-mRNA-1:exon:1564;Parent=Msa1338250-mRNA-1
tig0001834 exon 15813 15924 15813 ID=Msa1338250-mRNA-1:exon:1565;Parent=Msa1338250-mRNA-1
tig0001834 five_prime_UTR 12935 13059 12935 ID=Msa1338250-mRNA-1:five_prime_utr;Parent=Msa1338250-mRNA-1
tig0001834 five_prime_UTR 13181 13240 13181 ID=Msa1338250-mRNA-1:five_prime_utr;Parent=Msa1338250-mRNA-1
tig0001834 five_prime_UTR 14545 14652 14545 ID=Msa1338250-mRNA-1:five_prime_utr;Parent=Msa1338250-mRNA-1
tig0001834 CDS 14653 14964 14653 ID=Msa1338250-mRNA-1:cds;Parent=Msa1338250-mRNA-1
tig0001834 CDS 15069 15205 15069 ID=Msa1338250-mRNA-1:cds;Parent=Msa1338250-mRNA-1
tig0001834 CDS 15813 15924 15813 ID=Msa1338250-mRNA-1:cds;Parent=Msa1338250-mRNA-1
Gene Sequence

>Msa1338250

ATGGCTGCTGATCAGAGGAGGAAACGATTAAATGGGGCAAGCATTGTCGGTTATGGTTCTAAGGAGCAACACAAGACCAAAAGAAAGAATCTGGGTCTAGTCCAAAATGACATGAGAGCTCACATCTCTGTTGAATGGGATAACAACCAGAAAAGAGTTGTTGCCAAACGGGAACAAATTGGTATCAGTTGGAGACAAATGAAACCGTTTGTCAATCATGTTTCTAGTGATCATAAAGTCTTGGCAGATGTGGTTACAGTACCTGAAGAAATATTTGACTTGGATAATTTGAGTGAAGTGCTTTCATATGAGGTTTGGAAGACGCATCTTTCAGAAAATGAGAGAAACCATCTTATGAATTTTCTCCCTAGAGGCATAGAGCCACATCAAGCTGTGGAAGATTTGCTAGCTGGGACCGACTTTGACTTTGGAAGTCCCGTTTTGAATTGGGGTGCTTCAGTTTGTTCTGGTGATCTTCATCCAGATATAGTTGTTGGCCAGGAACAGCATCTGAAGTCTCAGAAGAGAGCATACTACAGACAGTTGCATAATTATCACAAT

Protein sequence

>Msa1338250

MAADQRRKRLNGASIVGYGSKEQHKTKRKNLGLVQNDMRAHISVEWDNNQKRVVAKREQIGISWRQMKPFVNHVSSDHKVLADVVTVPEEIFDLDNLSEVLSYEVWKTHLSENERNHLMNFLPRGIEPHQAVEDLLAGTDFDFGSPVLNWGASVCSGDLHPDIVVGQEQHLKSQKRAYYRQLHNYHN