AlfalfaGEDB | Msa1428400

M. sativa cultivar zhongmu-4 / Msa1428400

KEGG: K08150
GO: GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005365 GO:0005366 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015166 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0015791 GO:0015798 GO:0015850 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0023052 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0098655 GO:0098660 GO:0098662 GO:0120025 GO:1901618 GO:1902600 GO:1904659
PFAM: PF00083.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1428400	AHF50208.1	99.650	572	2	0	1	572	1	572	0.0	1158

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1428400	sp\|Q9C757\|INT2_ARATH	67.418	577	181	4	1	572	1	575	0.0	803

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1428400	W0G6D9	99.650	572	2	0	1	572	1	572	0.0	1158

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0196700	Msa1428400	0.805254	1.458840e-49	-8.615850e-47
Msa0248570	Msa1428400	0.985730	1.743870e-164	-8.615850e-47
Msa0286810	Msa1428400	0.951322	2.607692e-109	-8.615850e-47
Msa0325480	Msa1428400	0.992989	1.001897e-196	-8.615850e-47
Msa0523660	Msa1428400	0.801974	6.988572e-49	-8.615850e-47
Msa0588020	Msa1428400	0.823801	1.139165e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1428400	MtrunA17_Chr2g0303701	97.378	572	12	2	1	572	1	569	0.0	1129
Msa1428400	MtrunA17_Chr2g0303731	74.826	576	136	6	1	572	1	571	0.0	884
Msa1428400	MtrunA17_Chr8g0376631	74.913	574	137	4	1	571	1	570	0.0	845
Msa1428400	MtrunA17_Chr8g0376601	71.350	548	149	5	1	545	1	543	0.0	776
Msa1428400	MtrunA17_Chr8g0376611	74.200	500	120	4	70	566	3	496	0.0	747
Msa1428400	MtrunA17_Chr2g0290181	58.201	567	227	4	2	562	3	565	0.0	649
Msa1428400	MtrunA17_Chr2g0290161	50.996	502	210	6	67	562	1	472	8.01e-162	470
Msa1428400	MtrunA17_Chr7g0214451	56.338	355	147	1	6	360	21	367	3.14e-131	392
Msa1428400	MtrunA17_Chr7g0214451	56.667	120	50	1	439	556	363	482	2.50e-38	147
Msa1428400	MtrunA17_Chr1g0213611	57.386	352	142	1	6	357	66	409	1.04e-129	390

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1428400	AT1G30220.1	67.418	577	181	4	1	572	1	575	0.0	803
Msa1428400	AT4G16480.2	58.201	567	223	5	1	557	2	564	0.0	650
Msa1428400	AT4G16480.3	58.201	567	223	5	1	557	2	564	0.0	650
Msa1428400	AT4G16480.1	58.201	567	223	5	1	557	2	564	0.0	650
Msa1428400	AT2G35740.1	56.169	543	226	4	24	557	24	563	0.0	631
Msa1428400	AT2G43330.1	55.742	357	149	2	6	361	19	367	5.67e-123	372
Msa1428400	AT2G43330.1	58.333	108	45	0	449	556	375	482	1.80e-37	145
Msa1428400	AT4G36670.1	34.770	348	207	5	23	353	14	358	4.73e-55	194
Msa1428400	AT4G36670.1	38.462	104	64	0	452	555	378	481	1.28e-14	77.0
Msa1428400	AT3G18830.1	33.616	354	205	6	22	353	32	377	3.07e-52	187

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Find 141 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAACATCTGTTAGAAG+AGG	0.541737	tig0026345:+29212	Msa1428400:CDS
AAAACCGGCCAACTGAACAA+TGG	0.684628	tig0026345:-29309	None:intergenic
AAAGCAAGACGAAGAACATA+AGG	0.481359	tig0026345:-24836	None:intergenic
AAAGCAGACATATCTGCTTC+TGG	0.397219	tig0026345:-24782	None:intergenic
AAAGGCCAAGTTGATGAGAT+AGG	0.452110	tig0026345:-28568	None:intergenic
AAAGGTTGTCCTAGCAACTT+TGG	0.448496	tig0026345:+29836	Msa1428400:CDS
AAATGGGTCGTATGATTAGT+TGG	0.412737	tig0026345:+30466	Msa1428400:three_prime_UTR
AAATTGAACCTATTGCATTG+AGG	0.600439	tig0026345:-29376	None:intergenic
AACAATGTAACAGGGCAAAG+AGG	0.608199	tig0026345:+29061	Msa1428400:intron
AACATCCACCTCCATGTGCC+TGG	0.460125	tig0026345:-28714	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGAATGTTTATCTCTATCA+TGG	+	tig0026345:24807-24826	Msa1428400:CDS	30.0%
ATTTATGAAGAAACAGAGGA+GGG	-	tig0026345:24921-24940	None:intergenic	30.0%
AATTTATGAAGAAACAGAGG+AGG	-	tig0026345:24922-24941	None:intergenic	30.0%
TCATGCATTTACACAATCAA+CGG	+	tig0026345:25240-25259	Msa1428400:intron	30.0%
GGTTGAAATTCACAAGAAAA+GGG	-	tig0026345:25795-25814	None:intergenic	30.0%
AGGTTGAAATTCACAAGAAA+AGG	-	tig0026345:25796-25815	None:intergenic	30.0%
TTTCTATGTATCACAACACT+TGG	+	tig0026345:25900-25919	Msa1428400:intron	30.0%
TTGATCTTATCCGTTAAATC+CGG	-	tig0026345:26143-26162	None:intergenic	30.0%
AGGTAAATTTGCCAATAGAA+GGG	-	tig0026345:26333-26352	None:intergenic	30.0%
TAGGTAAATTTGCCAATAGA+AGG	-	tig0026345:26334-26353	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0026345	gene	24625	30590	24625	ID=Msa1428400;Name=Msa1428400
tig0026345	mRNA	24625	30590	24625	ID=Msa1428400-mRNA-1;Parent=Msa1428400;Name=Msa1428400-mRNA-1;_AED=0.06;_eAED=0.06;_QI=142\|1\|1\|1\|1\|1\|6\|362\|572
tig0026345	exon	24625	24899	24625	ID=Msa1428400-mRNA-1:exon:5955;Parent=Msa1428400-mRNA-1
tig0026345	exon	25668	25738	25668	ID=Msa1428400-mRNA-1:exon:5956;Parent=Msa1428400-mRNA-1
tig0026345	exon	28261	28596	28261	ID=Msa1428400-mRNA-1:exon:5957;Parent=Msa1428400-mRNA-1
tig0026345	exon	28711	28818	28711	ID=Msa1428400-mRNA-1:exon:5958;Parent=Msa1428400-mRNA-1
tig0026345	exon	29074	29673	29074	ID=Msa1428400-mRNA-1:exon:5959;Parent=Msa1428400-mRNA-1
tig0026345	exon	29758	30590	29758	ID=Msa1428400-mRNA-1:exon:5960;Parent=Msa1428400-mRNA-1
tig0026345	five_prime_UTR	24625	24766	24625	ID=Msa1428400-mRNA-1:five_prime_utr;Parent=Msa1428400-mRNA-1
tig0026345	CDS	24767	24899	24767	ID=Msa1428400-mRNA-1:cds;Parent=Msa1428400-mRNA-1
tig0026345	CDS	25668	25738	25668	ID=Msa1428400-mRNA-1:cds;Parent=Msa1428400-mRNA-1
tig0026345	CDS	28261	28596	28261	ID=Msa1428400-mRNA-1:cds;Parent=Msa1428400-mRNA-1
tig0026345	CDS	28711	28818	28711	ID=Msa1428400-mRNA-1:cds;Parent=Msa1428400-mRNA-1
tig0026345	CDS	29074	29673	29074	ID=Msa1428400-mRNA-1:cds;Parent=Msa1428400-mRNA-1
tig0026345	CDS	29758	30228	29758	ID=Msa1428400-mRNA-1:cds;Parent=Msa1428400-mRNA-1
tig0026345	three_prime_UTR	30229	30590	30229	ID=Msa1428400-mRNA-1:three_prime_utr;Parent=Msa1428400-mRNA-1

Gene Sequence

>Msa1428400

ATGGAAGGAGGTGTACCAGAAGCAGATATGTCTGCTTTCAGAGAATGTTTATCTCTATCATGGAAAAATCCTTATGTTCTTCGTCTTGCTTTTTCTGCTGGAATTGGTGGCCTTCTTTTTGGCTATGATACTGGAGTTATATCTGGAGCTCTTTTGTATATAAGAGATGAATTCCCAGCAGTAGAAAGGAAGACATGGCTTCAGGAAGCCATAGTGAGTACAGCAATTGCTGGAGCAATTATTGGAGCTGCAATTGGTGGATGGATCAATGATAGATTTGGAAGAAAAGTATCAATAATTGTTGCAGATACCCTCTTTTTAATAGGGTCAATTATCTTGGCTGCTGCTCCAAATCCAGCTACTCTCATTGTTGGTAGAGTATTTGTTGGTCTCGGTGTAGGGATGGCTTCAATGGCATCTCCTTTGTATATCTCCGAGGCTTCGCCAACTAGAGTTAGAGGTGCTCTTGTTAGTCTCAACAGTTTTCTCATCACTGGTGGACAGTTCCTTTCCTATCTCATCAACTTGGCCTTTACTAAGGCACCAGGCACATGGAGGTGGATGTTAGGAGTTGCAGCAGCACCTGCTGTGATACAAATTGTGCTCATGTTGTCACTTCCCGAGTCACCTCGTTGGTTGTACCGCAAGGGCAAAGAGGAAGAAGCAAAAGTAATTCTGAAAAAGATATACGAGGTCGAGGACTATGACAATGAGATTCAAGCATTGAAAGAATCAGTTGAAATGGAGCTTAAGGAAACAGAAAAAATCAGCATAATGCAGCTTCTAAAAACAACATCTGTTAGAAGAGGTTTATATGCAGGTTGTGGACTTGCATTTTTCCAACAATTTGTCGGTATCAACACTGTGATGTACTACAGTCCTTCCATTGTTCAGTTGGCCGGTTTTGCATCGAAAAGAACAGCACTTCTTCTGTCACTAATCACTTCTGGCCTCAATGCAATAGGTTCAATTTTGAGCATATATTTCATTGACAAAACCGGGAGGAAGAAACTTGCATTGATTAGTTTGACCGGTGTTGTCCTCTCTTTGACTCTTTTAACCGTTACTTTTCGTGAAAGCGAAATTCATGCACCAATGGTTAGTGTCATCGAAAGCTCTCATTTCAATAACACTAACACATGCCCTGAGTTCAAGACAGCAGCTATGAACAATCATAATTGGAATTGTATGAAGTGTATAAGGGCTGAGTCCACTACTTGTGGATTTTGTGCTGCTCCTGGTGACATGACCAAGCCAGGTGCATGTTTAATCTCGAATAAAAATACAGAAGATATTTGCGGCGTTGATCATAGAGCATGGTACACAAAAGGTTGTCCTAGCAACTTTGGTTGGATCGCTATAATAGCCCTCGCACTCTACATCATATTCTTCTCACCTGGAATGGGAACAGTTCCATGGGTTGTTAACTCTGAAATCTATCCATTGAGGTATAGAGGAATATGCGGAGGAATAGCATCAACAACGGTGTGGGTTTCTAACCTTGTTGTTTCACAATCCTTCTTGACTTTGACTGTGGCAATTGGACCTGCTTGGACTTTCATGATATTTGCAATCATTGCTATTGTTGCCATTTTCTTTGTCATCATTTTTGTGCCAGAGACTAAAGGGGTTCCAATGGAGGAAGTGGAGAGTATGCTTGAAAAGAGATTTGTGCAGATCAAGTTTTGGAAGAAGAGAGATTCTCCCTCTGAGAAATAA

Protein sequence

>Msa1428400

MEGGVPEADMSAFRECLSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDEFPAVERKTWLQEAIVSTAIAGAIIGAAIGGWINDRFGRKVSIIVADTLFLIGSIILAAAPNPATLIVGRVFVGLGVGMASMASPLYISEASPTRVRGALVSLNSFLITGGQFLSYLINLAFTKAPGTWRWMLGVAAAPAVIQIVLMLSLPESPRWLYRKGKEEEAKVILKKIYEVEDYDNEIQALKESVEMELKETEKISIMQLLKTTSVRRGLYAGCGLAFFQQFVGINTVMYYSPSIVQLAGFASKRTALLLSLITSGLNAIGSILSIYFIDKTGRKKLALISLTGVVLSLTLLTVTFRESEIHAPMVSVIESSHFNNTNTCPEFKTAAMNNHNWNCMKCIRAESTTCGFCAAPGDMTKPGACLISNKNTEDICGVDHRAWYTKGCPSNFGWIAIIALALYIIFFSPGMGTVPWVVNSEIYPLRYRGICGGIASTTVWVSNLVVSQSFLTLTVAIGPAWTFMIFAIIAIVAIFFVIIFVPETKGVPMEEVESMLEKRFVQIKFWKKRDSPSEK*