Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1442860 | sp|Q9P804|TRM1_SCHPO | 39.000 | 100 | 59 | 2 | 7 | 106 | 363 | 460 | 1.01e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1442860 | A0A072V2H3 | 95.763 | 118 | 5 | 0 | 3 | 120 | 295 | 412 | 9.47e-75 | 238 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1431960 | Msa1442860 | 0.840492 | 8.416469e-58 | -8.615850e-47 |
| Msa1442860 | Msa1460650 | 0.801958 | 7.041518e-49 | -8.615850e-47 |
| Msa0377560 | Msa1442860 | 0.828975 | 6.668266e-55 | -8.615850e-47 |
| Msa0377630 | Msa1442860 | 0.837995 | 3.740687e-57 | -8.615850e-47 |
| Msa0426730 | Msa1442860 | 0.823297 | 1.494297e-53 | -8.615850e-47 |
| Msa0926090 | Msa1442860 | 0.814423 | 1.552776e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1442860 | MtrunA17_Chr3g0128891 | 95.763 | 118 | 5 | 0 | 3 | 120 | 295 | 412 | 1.82e-78 | 238 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1442860 | AT3G56330.1 | 62.500 | 120 | 45 | 0 | 1 | 120 | 312 | 431 | 5.98e-49 | 163 |
Find 44 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCAATACTCCACCTCTT+AGG | 0.208380 | tig0030216:+1859 | Msa1442860:CDS |
| AGGGGACATACTTCATATTT+TGG | 0.210714 | tig0030216:+2714 | Msa1442860:CDS |
| AGGCTGATGTTGATATAAAT+AGG | 0.313209 | tig0030216:+2690 | Msa1442860:CDS |
| GTGACCCCAGGTTGCCATTT+GGG | 0.321091 | tig0030216:+1712 | Msa1442860:CDS |
| TCAGACTCGCTTAAGGTATC+AGG | 0.326059 | tig0030216:+1555 | Msa1442860:CDS |
| TTAAGGTATCAGGACCTCTT+TGG | 0.359066 | tig0030216:+1565 | Msa1442860:CDS |
| AATCAATACTCCACCTCTTA+GGG | 0.418319 | tig0030216:+1860 | Msa1442860:CDS |
| CCAGGTTTCAGACTCGCTTA+AGG | 0.425418 | tig0030216:+1548 | None:intergenic |
| GATATACCCAAATGGCAACC+TGG | 0.432960 | tig0030216:-1718 | None:intergenic |
| AGTGACCCCAGGTTGCCATT+TGG | 0.437494 | tig0030216:+1711 | Msa1442860:CDS |
| GCCAAGCAGTGGGGATGGAT+TGG | 0.442704 | tig0030216:+1636 | Msa1442860:CDS |
| TATAGCTAAAGAACTATTGC+CGG | 0.443111 | tig0030216:+2535 | Msa1442860:CDS |
| TAGTAATAGTGAAGCATTTG+AGG | 0.474582 | tig0030216:+2670 | Msa1442860:CDS |
| CTCGTGCAGGGCGCTCATCA+AGG | 0.477774 | tig0030216:-1883 | None:intergenic |
| TCATGATGCTGCATATCTTA+CGG | 0.488223 | tig0030216:+1599 | Msa1442860:CDS |
| GTATCAGGACCTCTTTGGAC+AGG | 0.504615 | tig0030216:+1570 | Msa1442860:CDS |
| ATCTGGCCAAGCAGTGGGGA+TGG | 0.507155 | tig0030216:+1631 | Msa1442860:CDS |
| TCTTACGGATATGTTAGATC+TGG | 0.511156 | tig0030216:+1614 | Msa1442860:CDS |
| CAGCTGAGTGGAATGTCAAA+AGG | 0.512417 | tig0030216:-2777 | None:intergenic |
| TGATGTTGATATAAATAGGA+AGG | 0.520359 | tig0030216:+2694 | Msa1442860:CDS |
| TGGGGATGGATTGGTTGTGA+TGG | 0.523059 | tig0030216:+1645 | Msa1442860:CDS |
| ACCAATCCATCCCCACTGCT+TGG | 0.526173 | tig0030216:-1637 | None:intergenic |
| GCCATTTGGGTATATCAAGT+TGG | 0.531607 | tig0030216:+1725 | Msa1442860:CDS |
| GTTAGATCTGGCCAAGCAGT+GGG | 0.541656 | tig0030216:+1626 | Msa1442860:CDS |
| AGAAGGGTTATGCTGCGAGC+AGG | 0.547371 | tig0030216:+2456 | Msa1442860:intron |
| GCGCTCATCAAGGCCCTAAG+AGG | 0.548089 | tig0030216:-1873 | None:intergenic |
| ATATACCCAAATGGCAACCT+GGG | 0.548650 | tig0030216:-1717 | None:intergenic |
| CTTGATGAGCGCCCTGCACG+AGG | 0.550935 | tig0030216:+1884 | Msa1442860:CDS |
| TCCAACTTGATATACCCAAA+TGG | 0.552417 | tig0030216:-1726 | None:intergenic |
| TGGGTATATCAAGTTGGATG+AGG | 0.554171 | tig0030216:+1731 | Msa1442860:CDS |
| TGAAAAGCTTATAAAACAGA+TGG | 0.567081 | tig0030216:+1680 | Msa1442860:CDS |
| CTCATCAAGGCCCTAAGAGG+TGG | 0.569465 | tig0030216:-1870 | None:intergenic |
| ATGAAGTTGTTGATCATGCA+AGG | 0.583096 | tig0030216:+2740 | Msa1442860:CDS |
| TGTTAGATCTGGCCAAGCAG+TGG | 0.583759 | tig0030216:+1625 | Msa1442860:CDS |
| AAAGCTTATAAAACAGATGG+TGG | 0.586301 | tig0030216:+1683 | Msa1442860:CDS |
| GATGTTGATATAAATAGGAA+GGG | 0.593384 | tig0030216:+2695 | Msa1442860:CDS |
| TATACTAATGAATTCTGTCA+TGG | 0.605433 | tig0030216:-2516 | None:intergenic |
| AGATATGCAGCATCATGAAG+AGG | 0.611576 | tig0030216:-1594 | None:intergenic |
| TATCAGGACCTCTTTGGACA+GGG | 0.628853 | tig0030216:+1571 | Msa1442860:CDS |
| TGGTGGATGAAAGTGACCCC+AGG | 0.634109 | tig0030216:+1700 | Msa1442860:CDS |
| ATGTTGATATAAATAGGAAG+GGG | 0.634964 | tig0030216:+2696 | Msa1442860:CDS |
| TGAAGAGGCCCTGTCCAAAG+AGG | 0.649312 | tig0030216:-1579 | None:intergenic |
| TATACCCAAATGGCAACCTG+GGG | 0.735324 | tig0030216:-1716 | None:intergenic |
| TTAGATCTGGCCAAGCAGTG+GGG | 0.745563 | tig0030216:+1627 | Msa1442860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTATTTTAAAATTGTGTTAA+AGG | + | tig0030216:2001-2020 | Msa1442860:intron | 15.0% |
| !! | TTATGTATGTATAAAAATGA+AGG | + | tig0030216:2273-2292 | Msa1442860:intron | 15.0% |
| !! | TATGTATGTATAAAAATGAA+GGG | + | tig0030216:2274-2293 | Msa1442860:intron | 15.0% |
| !!! | CTATTTTAAAATTGTGTTAA+AGG | + | tig0030216:2001-2020 | Msa1442860:intron | 15.0% |
| !! | TTATGTATGTATAAAAATGA+AGG | + | tig0030216:2273-2292 | Msa1442860:intron | 15.0% |
| !! | TATGTATGTATAAAAATGAA+GGG | + | tig0030216:2274-2293 | Msa1442860:intron | 15.0% |
| !!! | ACTCTAAAAGTTCTTTAATT+TGG | + | tig0030216:1908-1927 | Msa1442860:intron | 20.0% |
| !! | TAAAAGAATCAAAGTCATAA+TGG | + | tig0030216:1931-1950 | Msa1442860:intron | 20.0% |
| !! | AATTGCATTTAGATATGATT+AGG | + | tig0030216:2139-2158 | Msa1442860:intron | 20.0% |
| !!! | ATTTGTTTTAATTGCATTTG+CGG | - | tig0030216:2492-2511 | None:intergenic | 20.0% |
| !!! | ACTCTAAAAGTTCTTTAATT+TGG | + | tig0030216:1908-1927 | Msa1442860:intron | 20.0% |
| !! | TAAAAGAATCAAAGTCATAA+TGG | + | tig0030216:1931-1950 | Msa1442860:intron | 20.0% |
| !! | AATTGCATTTAGATATGATT+AGG | + | tig0030216:2139-2158 | Msa1442860:intron | 20.0% |
| !!! | ATTTGTTTTAATTGCATTTG+CGG | - | tig0030216:2492-2511 | None:intergenic | 20.0% |
| ! | TGAAAAGCTTATAAAACAGA+TGG | + | tig0030216:1680-1699 | Msa1442860:CDS | 25.0% |
| !! | TTTATTTGTACTTTTCCAGA+TGG | + | tig0030216:1824-1843 | Msa1442860:intron | 25.0% |
| ! | GATATAGATAAGAGAGTAAA+AGG | + | tig0030216:2044-2063 | Msa1442860:intron | 25.0% |
| ! | TTATGTCATGAAAGCAATTA+TGG | - | tig0030216:2181-2200 | None:intergenic | 25.0% |
| ! | TTATACCATAATTGCTTTCA+TGG | - | tig0030216:2237-2256 | None:intergenic | 25.0% |
| ! | ATGACATGATATAGAACAAA+AGG | - | tig0030216:2305-2324 | None:intergenic | 25.0% |
| ! | ACTAAACATGGTAAACAAAT+CGG | - | tig0030216:2336-2355 | None:intergenic | 25.0% |
| ! | ATATCTCATCAAACTAAACA+TGG | - | tig0030216:2348-2367 | None:intergenic | 25.0% |
| ! | TATACTAATGAATTCTGTCA+TGG | - | tig0030216:2519-2538 | None:intergenic | 25.0% |
| ! | TGATGTTGATATAAATAGGA+AGG | + | tig0030216:2694-2713 | Msa1442860:CDS | 25.0% |
| ! | GATGTTGATATAAATAGGAA+GGG | + | tig0030216:2695-2714 | Msa1442860:CDS | 25.0% |
| ! | ATGTTGATATAAATAGGAAG+GGG | + | tig0030216:2696-2715 | Msa1442860:CDS | 25.0% |
| ! | TGAAAAGCTTATAAAACAGA+TGG | + | tig0030216:1680-1699 | Msa1442860:CDS | 25.0% |
| !! | TTTATTTGTACTTTTCCAGA+TGG | + | tig0030216:1824-1843 | Msa1442860:intron | 25.0% |
| ! | GATATAGATAAGAGAGTAAA+AGG | + | tig0030216:2044-2063 | Msa1442860:intron | 25.0% |
| ! | TTATGTCATGAAAGCAATTA+TGG | - | tig0030216:2181-2200 | None:intergenic | 25.0% |
| ! | TTATACCATAATTGCTTTCA+TGG | - | tig0030216:2237-2256 | None:intergenic | 25.0% |
| ! | ATGACATGATATAGAACAAA+AGG | - | tig0030216:2305-2324 | None:intergenic | 25.0% |
| ! | ACTAAACATGGTAAACAAAT+CGG | - | tig0030216:2336-2355 | None:intergenic | 25.0% |
| ! | ATATCTCATCAAACTAAACA+TGG | - | tig0030216:2348-2367 | None:intergenic | 25.0% |
| ! | TATACTAATGAATTCTGTCA+TGG | - | tig0030216:2519-2538 | None:intergenic | 25.0% |
| ! | TGATGTTGATATAAATAGGA+AGG | + | tig0030216:2694-2713 | Msa1442860:CDS | 25.0% |
| ! | GATGTTGATATAAATAGGAA+GGG | + | tig0030216:2695-2714 | Msa1442860:CDS | 25.0% |
| ! | ATGTTGATATAAATAGGAAG+GGG | + | tig0030216:2696-2715 | Msa1442860:CDS | 25.0% |
| AAAGCTTATAAAACAGATGG+TGG | + | tig0030216:1683-1702 | Msa1442860:CDS | 30.0% | |
| GTAAATACTGTTAGCTACTT+TGG | + | tig0030216:1778-1797 | Msa1442860:intron | 30.0% | |
| TTGGTGAGAATATTGAGTTA+TGG | + | tig0030216:1797-1816 | Msa1442860:intron | 30.0% | |
| !!! | ATTTTTTTGAGCAGCAAAGA+AGG | - | tig0030216:2205-2224 | None:intergenic | 30.0% |
| TCTGCAATAAACAAAGTACA+AGG | - | tig0030216:2439-2458 | None:intergenic | 30.0% | |
| ! | TGTACTTTGTTTATTGCAGA+AGG | + | tig0030216:2439-2458 | Msa1442860:intron | 30.0% |
| ! | GTACTTTGTTTATTGCAGAA+GGG | + | tig0030216:2440-2459 | Msa1442860:intron | 30.0% |
| TATAGCTAAAGAACTATTGC+CGG | + | tig0030216:2535-2554 | Msa1442860:CDS | 30.0% | |
| ! | TTAATGTTCACATGAGTTGA+AGG | + | tig0030216:2606-2625 | Msa1442860:intron | 30.0% |
| ! | TAGTAATAGTGAAGCATTTG+AGG | + | tig0030216:2670-2689 | Msa1442860:CDS | 30.0% |
| AGGCTGATGTTGATATAAAT+AGG | + | tig0030216:2690-2709 | Msa1442860:CDS | 30.0% | |
| AAAGCTTATAAAACAGATGG+TGG | + | tig0030216:1683-1702 | Msa1442860:CDS | 30.0% | |
| GTAAATACTGTTAGCTACTT+TGG | + | tig0030216:1778-1797 | Msa1442860:intron | 30.0% | |
| TTGGTGAGAATATTGAGTTA+TGG | + | tig0030216:1797-1816 | Msa1442860:intron | 30.0% | |
| !!! | ATTTTTTTGAGCAGCAAAGA+AGG | - | tig0030216:2205-2224 | None:intergenic | 30.0% |
| TCTGCAATAAACAAAGTACA+AGG | - | tig0030216:2439-2458 | None:intergenic | 30.0% | |
| ! | TGTACTTTGTTTATTGCAGA+AGG | + | tig0030216:2439-2458 | Msa1442860:intron | 30.0% |
| ! | GTACTTTGTTTATTGCAGAA+GGG | + | tig0030216:2440-2459 | Msa1442860:intron | 30.0% |
| TATAGCTAAAGAACTATTGC+CGG | + | tig0030216:2535-2554 | Msa1442860:CDS | 30.0% | |
| ! | TTAATGTTCACATGAGTTGA+AGG | + | tig0030216:2606-2625 | Msa1442860:intron | 30.0% |
| ! | TAGTAATAGTGAAGCATTTG+AGG | + | tig0030216:2670-2689 | Msa1442860:CDS | 30.0% |
| AGGCTGATGTTGATATAAAT+AGG | + | tig0030216:2690-2709 | Msa1442860:CDS | 30.0% | |
| TCATGATGCTGCATATCTTA+CGG | + | tig0030216:1599-1618 | Msa1442860:CDS | 35.0% | |
| TCTTACGGATATGTTAGATC+TGG | + | tig0030216:1614-1633 | Msa1442860:CDS | 35.0% | |
| TCCAACTTGATATACCCAAA+TGG | - | tig0030216:1729-1748 | None:intergenic | 35.0% | |
| !!! | GTGGAGTATTGATTTTTGCA+CGG | - | tig0030216:1854-1873 | None:intergenic | 35.0% |
| AAATCAATACTCCACCTCTT+AGG | + | tig0030216:1859-1878 | Msa1442860:CDS | 35.0% | |
| AATCAATACTCCACCTCTTA+GGG | + | tig0030216:1860-1879 | Msa1442860:CDS | 35.0% | |
| CTCATATGCATCATGAAAAC+TGG | + | tig0030216:2073-2092 | Msa1442860:intron | 35.0% | |
| CGGAGAAACTACTAAAGAAT+AGG | + | tig0030216:2101-2120 | Msa1442860:intron | 35.0% | |
| CTATGCCATGAAAGCAATTA+TGG | + | tig0030216:2229-2248 | Msa1442860:intron | 35.0% | |
| CAAAGTACAAGGTAAGTGAA+TGG | - | tig0030216:2428-2447 | None:intergenic | 35.0% | |
| AACCATTAAGAGACAGATAC+CGG | - | tig0030216:2557-2576 | None:intergenic | 35.0% | |
| GTATCTGTCTCTTAATGGTT+TGG | + | tig0030216:2557-2576 | Msa1442860:intron | 35.0% | |
| GAACATTAACAAATGCTCAG+AGG | - | tig0030216:2595-2614 | None:intergenic | 35.0% | |
| ! | AGGGGACATACTTCATATTT+TGG | + | tig0030216:2714-2733 | Msa1442860:CDS | 35.0% |
| ATGAAGTTGTTGATCATGCA+AGG | + | tig0030216:2740-2759 | Msa1442860:CDS | 35.0% | |
| TCATGATGCTGCATATCTTA+CGG | + | tig0030216:1599-1618 | Msa1442860:CDS | 35.0% | |
| TCTTACGGATATGTTAGATC+TGG | + | tig0030216:1614-1633 | Msa1442860:CDS | 35.0% | |
| TCCAACTTGATATACCCAAA+TGG | - | tig0030216:1729-1748 | None:intergenic | 35.0% | |
| !!! | GTGGAGTATTGATTTTTGCA+CGG | - | tig0030216:1854-1873 | None:intergenic | 35.0% |
| AAATCAATACTCCACCTCTT+AGG | + | tig0030216:1859-1878 | Msa1442860:CDS | 35.0% | |
| AATCAATACTCCACCTCTTA+GGG | + | tig0030216:1860-1879 | Msa1442860:CDS | 35.0% | |
| CTCATATGCATCATGAAAAC+TGG | + | tig0030216:2073-2092 | Msa1442860:intron | 35.0% | |
| CGGAGAAACTACTAAAGAAT+AGG | + | tig0030216:2101-2120 | Msa1442860:intron | 35.0% | |
| CTATGCCATGAAAGCAATTA+TGG | + | tig0030216:2229-2248 | Msa1442860:intron | 35.0% | |
| CAAAGTACAAGGTAAGTGAA+TGG | - | tig0030216:2428-2447 | None:intergenic | 35.0% | |
| AACCATTAAGAGACAGATAC+CGG | - | tig0030216:2557-2576 | None:intergenic | 35.0% | |
| GTATCTGTCTCTTAATGGTT+TGG | + | tig0030216:2557-2576 | Msa1442860:intron | 35.0% | |
| GAACATTAACAAATGCTCAG+AGG | - | tig0030216:2595-2614 | None:intergenic | 35.0% | |
| ! | AGGGGACATACTTCATATTT+TGG | + | tig0030216:2714-2733 | Msa1442860:CDS | 35.0% |
| ATGAAGTTGTTGATCATGCA+AGG | + | tig0030216:2740-2759 | Msa1442860:CDS | 35.0% | |
| ! | TTAAGGTATCAGGACCTCTT+TGG | + | tig0030216:1565-1584 | Msa1442860:CDS | 40.0% |
| AGATATGCAGCATCATGAAG+AGG | - | tig0030216:1597-1616 | None:intergenic | 40.0% | |
| ATATACCCAAATGGCAACCT+GGG | - | tig0030216:1720-1739 | None:intergenic | 40.0% | |
| GCCATTTGGGTATATCAAGT+TGG | + | tig0030216:1725-1744 | Msa1442860:CDS | 40.0% | |
| !! | TGGGTATATCAAGTTGGATG+AGG | + | tig0030216:1731-1750 | Msa1442860:CDS | 40.0% |
| CATCATGAAAACTGGCAGTT+CGG | + | tig0030216:2081-2100 | Msa1442860:intron | 40.0% | |
| GTACAAGGTAAGTGAATGGT+TGG | - | tig0030216:2424-2443 | None:intergenic | 40.0% | |
| ! | CTTAATGGTTTGGCCTCTAA+AGG | + | tig0030216:2567-2586 | Msa1442860:intron | 40.0% |
| ! | TTAAGGTATCAGGACCTCTT+TGG | + | tig0030216:1565-1584 | Msa1442860:CDS | 40.0% |
| AGATATGCAGCATCATGAAG+AGG | - | tig0030216:1597-1616 | None:intergenic | 40.0% | |
| ATATACCCAAATGGCAACCT+GGG | - | tig0030216:1720-1739 | None:intergenic | 40.0% | |
| GCCATTTGGGTATATCAAGT+TGG | + | tig0030216:1725-1744 | Msa1442860:CDS | 40.0% | |
| !! | TGGGTATATCAAGTTGGATG+AGG | + | tig0030216:1731-1750 | Msa1442860:CDS | 40.0% |
| CATCATGAAAACTGGCAGTT+CGG | + | tig0030216:2081-2100 | Msa1442860:intron | 40.0% | |
| GTACAAGGTAAGTGAATGGT+TGG | - | tig0030216:2424-2443 | None:intergenic | 40.0% | |
| ! | CTTAATGGTTTGGCCTCTAA+AGG | + | tig0030216:2567-2586 | Msa1442860:intron | 40.0% |
| ! | TCAGACTCGCTTAAGGTATC+AGG | + | tig0030216:1555-1574 | Msa1442860:CDS | 45.0% |
| TATCAGGACCTCTTTGGACA+GGG | + | tig0030216:1571-1590 | Msa1442860:CDS | 45.0% | |
| TATACCCAAATGGCAACCTG+GGG | - | tig0030216:1719-1738 | None:intergenic | 45.0% | |
| GATATACCCAAATGGCAACC+TGG | - | tig0030216:1721-1740 | None:intergenic | 45.0% | |
| !!! | CTTTTAGAGTACCTCGTGCA+GGG | - | tig0030216:1898-1917 | None:intergenic | 45.0% |
| !!! | ACTTTTAGAGTACCTCGTGC+AGG | - | tig0030216:1899-1918 | None:intergenic | 45.0% |
| TGCCGGTATCTGTCTCTTAA+TGG | + | tig0030216:2552-2571 | Msa1442860:intron | 45.0% | |
| ATGCTCAGAGGAACCTTTAG+AGG | - | tig0030216:2583-2602 | None:intergenic | 45.0% | |
| ! | TCAGACTCGCTTAAGGTATC+AGG | + | tig0030216:1555-1574 | Msa1442860:CDS | 45.0% |
| TATCAGGACCTCTTTGGACA+GGG | + | tig0030216:1571-1590 | Msa1442860:CDS | 45.0% | |
| TATACCCAAATGGCAACCTG+GGG | - | tig0030216:1719-1738 | None:intergenic | 45.0% | |
| GATATACCCAAATGGCAACC+TGG | - | tig0030216:1721-1740 | None:intergenic | 45.0% | |
| !!! | CTTTTAGAGTACCTCGTGCA+GGG | - | tig0030216:1898-1917 | None:intergenic | 45.0% |
| !!! | ACTTTTAGAGTACCTCGTGC+AGG | - | tig0030216:1899-1918 | None:intergenic | 45.0% |
| TGCCGGTATCTGTCTCTTAA+TGG | + | tig0030216:2552-2571 | Msa1442860:intron | 45.0% | |
| ATGCTCAGAGGAACCTTTAG+AGG | - | tig0030216:2583-2602 | None:intergenic | 45.0% | |
| GTATCAGGACCTCTTTGGAC+AGG | + | tig0030216:1570-1589 | Msa1442860:CDS | 50.0% | |
| TGTTAGATCTGGCCAAGCAG+TGG | + | tig0030216:1625-1644 | Msa1442860:CDS | 50.0% | |
| GTTAGATCTGGCCAAGCAGT+GGG | + | tig0030216:1626-1645 | Msa1442860:CDS | 50.0% | |
| TTAGATCTGGCCAAGCAGTG+GGG | + | tig0030216:1627-1646 | Msa1442860:CDS | 50.0% | |
| !! | TGGGGATGGATTGGTTGTGA+TGG | + | tig0030216:1645-1664 | Msa1442860:CDS | 50.0% |
| ! | TTTTTGCACGGCTTGCCATC+TGG | - | tig0030216:1842-1861 | None:intergenic | 50.0% |
| GTATCAGGACCTCTTTGGAC+AGG | + | tig0030216:1570-1589 | Msa1442860:CDS | 50.0% | |
| TGTTAGATCTGGCCAAGCAG+TGG | + | tig0030216:1625-1644 | Msa1442860:CDS | 50.0% | |
| GTTAGATCTGGCCAAGCAGT+GGG | + | tig0030216:1626-1645 | Msa1442860:CDS | 50.0% | |
| TTAGATCTGGCCAAGCAGTG+GGG | + | tig0030216:1627-1646 | Msa1442860:CDS | 50.0% | |
| !! | TGGGGATGGATTGGTTGTGA+TGG | + | tig0030216:1645-1664 | Msa1442860:CDS | 50.0% |
| ! | TTTTTGCACGGCTTGCCATC+TGG | - | tig0030216:1842-1861 | None:intergenic | 50.0% |
| TGAAGAGGCCCTGTCCAAAG+AGG | - | tig0030216:1582-1601 | None:intergenic | 55.0% | |
| ACCAATCCATCCCCACTGCT+TGG | - | tig0030216:1640-1659 | None:intergenic | 55.0% | |
| ! | TGGTGGATGAAAGTGACCCC+AGG | + | tig0030216:1700-1719 | Msa1442860:CDS | 55.0% |
| AGTGACCCCAGGTTGCCATT+TGG | + | tig0030216:1711-1730 | Msa1442860:CDS | 55.0% | |
| ! | GTGACCCCAGGTTGCCATTT+GGG | + | tig0030216:1712-1731 | Msa1442860:CDS | 55.0% |
| CTCATCAAGGCCCTAAGAGG+TGG | - | tig0030216:1873-1892 | None:intergenic | 55.0% | |
| AGAAGGGTTATGCTGCGAGC+AGG | + | tig0030216:2456-2475 | Msa1442860:intron | 55.0% | |
| TGAAGAGGCCCTGTCCAAAG+AGG | - | tig0030216:1582-1601 | None:intergenic | 55.0% | |
| ACCAATCCATCCCCACTGCT+TGG | - | tig0030216:1640-1659 | None:intergenic | 55.0% | |
| ! | TGGTGGATGAAAGTGACCCC+AGG | + | tig0030216:1700-1719 | Msa1442860:CDS | 55.0% |
| AGTGACCCCAGGTTGCCATT+TGG | + | tig0030216:1711-1730 | Msa1442860:CDS | 55.0% | |
| ! | GTGACCCCAGGTTGCCATTT+GGG | + | tig0030216:1712-1731 | Msa1442860:CDS | 55.0% |
| CTCATCAAGGCCCTAAGAGG+TGG | - | tig0030216:1873-1892 | None:intergenic | 55.0% | |
| AGAAGGGTTATGCTGCGAGC+AGG | + | tig0030216:2456-2475 | Msa1442860:intron | 55.0% | |
| ATCTGGCCAAGCAGTGGGGA+TGG | + | tig0030216:1631-1650 | Msa1442860:CDS | 60.0% | |
| GCCAAGCAGTGGGGATGGAT+TGG | + | tig0030216:1636-1655 | Msa1442860:CDS | 60.0% | |
| GCGCTCATCAAGGCCCTAAG+AGG | - | tig0030216:1876-1895 | None:intergenic | 60.0% | |
| ATCTGGCCAAGCAGTGGGGA+TGG | + | tig0030216:1631-1650 | Msa1442860:CDS | 60.0% | |
| GCCAAGCAGTGGGGATGGAT+TGG | + | tig0030216:1636-1655 | Msa1442860:CDS | 60.0% | |
| GCGCTCATCAAGGCCCTAAG+AGG | - | tig0030216:1876-1895 | None:intergenic | 60.0% | |
| ! | CTCGTGCAGGGCGCTCATCA+AGG | - | tig0030216:1886-1905 | None:intergenic | 65.0% |
| CTTGATGAGCGCCCTGCACG+AGG | + | tig0030216:1884-1903 | Msa1442860:CDS | 65.0% | |
| ! | CTCGTGCAGGGCGCTCATCA+AGG | - | tig0030216:1886-1905 | None:intergenic | 65.0% |
| CTTGATGAGCGCCCTGCACG+AGG | + | tig0030216:1884-1903 | Msa1442860:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0030216 | gene | 1552 | 2784 | 1552 | ID=Msa1442860;Name=Msa1442860 |
| tig0030216 | mRNA | 1552 | 2784 | 1552 | ID=Msa1442860-mRNA-1;Parent=Msa1442860;Name=Msa1442860-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.66|0.25|1|1|1|4|0|162 |
| tig0030216 | exon | 1552 | 1752 | 1552 | ID=Msa1442860-mRNA-1:exon:13559;Parent=Msa1442860-mRNA-1 |
| tig0030216 | exon | 1843 | 1905 | 1843 | ID=Msa1442860-mRNA-1:exon:13560;Parent=Msa1442860-mRNA-1 |
| tig0030216 | exon | 2458 | 2556 | 2458 | ID=Msa1442860-mRNA-1:exon:13561;Parent=Msa1442860-mRNA-1 |
| tig0030216 | exon | 2659 | 2784 | 2659 | ID=Msa1442860-mRNA-1:exon:13562;Parent=Msa1442860-mRNA-1 |
| tig0030216 | CDS | 1552 | 1752 | 1552 | ID=Msa1442860-mRNA-1:cds;Parent=Msa1442860-mRNA-1 |
| tig0030216 | CDS | 1843 | 1905 | 1843 | ID=Msa1442860-mRNA-1:cds;Parent=Msa1442860-mRNA-1 |
| tig0030216 | CDS | 2458 | 2556 | 2458 | ID=Msa1442860-mRNA-1:cds;Parent=Msa1442860-mRNA-1 |
| tig0030216 | CDS | 2659 | 2784 | 2659 | ID=Msa1442860-mRNA-1:cds;Parent=Msa1442860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
