AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0926090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0926090 MtrunA17_Chr6g0487251 89.143 175 5 4 1 175 1 161 6.72e-105 297
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0926090 AT1G68590.1 84.444 90 14 0 86 175 76 165 1.92e-55 172
Msa0926090 AT1G68590.2 83.146 89 15 0 87 175 74 162 1.53e-54 170
Msa0926090 AT5G15760.1 70.588 102 30 0 73 174 82 183 2.04e-50 160

Find 51 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTAAGCCCTTATTACTTT+TGG 0.215786 6_2:+69659524 Msa0926090:CDS
TTCCTTGGCCAAAAGTAATA+AGG 0.216981 6_2:-69659532 None:intergenic
AGAACAACAATAACATTAAA+AGG 0.282391 6_2:-69659745 None:intergenic
TTAGGTGAATAATTACTCTT+TGG 0.302007 6_2:+69659822 Msa0926090:three_prime_UTR
GACTCGTGTTGAAGTTCATT+TGG 0.338552 6_2:+69659443 Msa0926090:CDS
TTATCCTACATTTGAGCCTT+AGG 0.357487 6_2:-69659686 None:intergenic
TCCTTGGCCAAAAGTAATAA+GGG 0.369106 6_2:-69659531 None:intergenic
TCACTGAACTTGTTGTTTCA+CGG 0.380046 6_2:+69659860 Msa0926090:three_prime_UTR
CAAAAGTAATAAGGGCTTAG+AGG 0.406041 6_2:-69659523 None:intergenic
AAAAGAGGCTTTGAAGTTGT+TGG 0.406975 6_2:-69657852 None:intergenic
TCTTCCCAAGCATCTTTCCT+TGG 0.419837 6_2:-69659547 None:intergenic
CCACCGATATTATCAATTTG+TGG 0.425132 6_2:+69659638 Msa0926090:CDS
CTGCCACAAATTGATAATAT+CGG 0.432997 6_2:-69659641 None:intergenic
ATATATATGTTTAGAATGTC+TGG 0.437416 6_2:-69660012 None:intergenic
CGTGTTGAAGTTCATTTGGA+TGG 0.444833 6_2:+69659447 Msa0926090:CDS
TGAGGTGGAGGTTGAAGAGA+AGG 0.448959 6_2:-69658008 None:intergenic
ATGGAGAAGAACATCGGTAT+TGG 0.450928 6_2:+69659466 Msa0926090:CDS
ACGAGTCTTGGTTTGTCTGT+TGG 0.451057 6_2:-69659427 None:intergenic
TCAACCTCCACCTCAATCTC+AGG 0.453824 6_2:+69658016 Msa0926090:CDS
ATGAACTTCAACACGAGTCT+TGG 0.461392 6_2:-69659439 None:intergenic
TTGGCCAAGGAAAGATGCTT+GGG 0.477445 6_2:+69659543 Msa0926090:CDS
TTCCATGGCCAGGTATCAAT+TGG 0.480682 6_2:-69659495 None:intergenic
TTTGGCCAAGGAAAGATGCT+TGG 0.483605 6_2:+69659542 Msa0926090:CDS
AGAACCTGAGATTGAGGTGG+AGG 0.486354 6_2:-69658020 None:intergenic
GGCGGTAACTTGTCCTCCTA+AGG 0.511225 6_2:+69659670 Msa0926090:CDS
AGTTGCTAGAGAGTAAGCCT+TGG 0.524129 6_2:+69659578 Msa0926090:CDS
TTTGATGGGTCGAATTGAAA+AGG 0.525559 6_2:-69657883 None:intergenic
TGGAGGTTGAAGAGAAGGAG+AGG 0.528382 6_2:-69658003 None:intergenic
AGAGGAATGGTTCCATGGCC+AGG 0.528465 6_2:-69659505 None:intergenic
GTAATAAGGGCTTAGAGGAA+TGG 0.544994 6_2:-69659518 None:intergenic
GAGTTATCGTGTTCTAGATA+AGG 0.545660 6_2:-69657687 None:intergenic
GTTGTTGTGATGTAGAAGCT+AGG 0.555418 6_2:+69659391 Msa0926090:intron
TCCTACATTTGAGCCTTAGG+AGG 0.560591 6_2:-69659683 None:intergenic
AGAGAGAGAACCTGAGATTG+AGG 0.570056 6_2:-69658026 None:intergenic
GGCTTAGAGGAATGGTTCCA+TGG 0.575688 6_2:-69659510 None:intergenic
GGACTTGACCAATTGATACC+TGG 0.579475 6_2:+69659487 Msa0926090:CDS
GACCAATTGATACCTGGCCA+TGG 0.585251 6_2:+69659493 Msa0926090:CDS
TCCTCCTAAGGCTCAAATGT+AGG 0.585363 6_2:+69659682 Msa0926090:exon
AGATGCTTGGGAAGAACTCA+AGG 0.585963 6_2:+69659555 Msa0926090:CDS
GAGAGAACCTGAGATTGAGG+TGG 0.621757 6_2:-69658023 None:intergenic
TAGAACACGATAACTCACTC+TGG 0.621932 6_2:+69657694 Msa0926090:five_prime_UTR
ATTATTCACCTAAAAGAATG+TGG 0.622426 6_2:-69659812 None:intergenic
TTATCGTGTTCTAGATAAGG+AGG 0.625327 6_2:-69657684 None:intergenic
CCACAAATTGATAATATCGG+TGG 0.628396 6_2:-69659638 None:intergenic
ATCAATTTGTGGCAGCAGAG+CGG 0.648603 6_2:+69659649 Msa0926090:CDS
ATTTGGATGGAGAAGAACAT+CGG 0.651745 6_2:+69659460 Msa0926090:CDS
AATTTGTGGCAGCAGAGCGG+CGG 0.660943 6_2:+69659652 Msa0926090:CDS
TGCTAAATAAGACTATTACA+CGG 0.674644 6_2:+69660040 Msa0926090:three_prime_UTR
CAAGAGCAGAAACAGTAAAG+CGG 0.684597 6_2:-69657947 None:intergenic
TCACATTTCACATACAAACA+CGG 0.697464 6_2:-69659897 None:intergenic
TGTGATGTAGAAGCTAGGAG+TGG 0.712045 6_2:+69659396 Msa0926090:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAATATAAAACAGTTTT+AGG + chr6_2:69658518-69658537 Msa0926090:intron 10.0%
!!! ATTAATATAAAACAGTTTTA+GGG + chr6_2:69658519-69658538 Msa0926090:intron 10.0%
!!! TATTAATATAAAACAGTTTT+AGG + chr6_2:69658518-69658537 Msa0926090:intron 10.0%
!!! ATTAATATAAAACAGTTTTA+GGG + chr6_2:69658519-69658538 Msa0926090:intron 10.0%
!!! CATTTTTGTTTTATAATTGT+TGG + chr6_2:69658612-69658631 Msa0926090:intron 15.0%
!! TTGTAAAAAATAATCATGTT+TGG + chr6_2:69658946-69658965 Msa0926090:intron 15.0%
!! TAAAAAGCTTATATTATGTT+TGG - chr6_2:69659333-69659352 None:intergenic 15.0%
!!! CATTTTTGTTTTATAATTGT+TGG + chr6_2:69658612-69658631 Msa0926090:intron 15.0%
!! TTGTAAAAAATAATCATGTT+TGG + chr6_2:69658946-69658965 Msa0926090:intron 15.0%
!! TAAAAAGCTTATATTATGTT+TGG - chr6_2:69659333-69659352 None:intergenic 15.0%
!!! TTTTAGTGTGAATGTTTAAA+AGG + chr6_2:69658175-69658194 Msa0926090:intron 20.0%
!! TTTAGTGTGAATGTTTAAAA+GGG + chr6_2:69658176-69658195 Msa0926090:intron 20.0%
!!! TTGAAATTTTAGTGTATGTT+TGG + chr6_2:69658202-69658221 Msa0926090:intron 20.0%
!! ACAAAAATGCTTAAATTACA+GGG - chr6_2:69658499-69658518 None:intergenic 20.0%
!! TACAAAAATGCTTAAATTAC+AGG - chr6_2:69658500-69658519 None:intergenic 20.0%
!! TTCTTAATGAAACTACAAAA+GGG - chr6_2:69658546-69658565 None:intergenic 20.0%
!! TTTCTTAATGAAACTACAAA+AGG - chr6_2:69658547-69658566 None:intergenic 20.0%
!!! GTAATAGAAATGATTTTGAA+TGG + chr6_2:69658976-69658995 Msa0926090:intron 20.0%
!!! TTAAATCAATTTTATGTGTC+TGG + chr6_2:69659188-69659207 Msa0926090:intron 20.0%
!! AGAACAACAATAACATTAAA+AGG - chr6_2:69659748-69659767 None:intergenic 20.0%
!!! ATATATATGTTTAGAATGTC+TGG - chr6_2:69660015-69660034 None:intergenic 20.0%
!!! TTTTAGTGTGAATGTTTAAA+AGG + chr6_2:69658175-69658194 Msa0926090:intron 20.0%
!! TTTAGTGTGAATGTTTAAAA+GGG + chr6_2:69658176-69658195 Msa0926090:intron 20.0%
!!! TTGAAATTTTAGTGTATGTT+TGG + chr6_2:69658202-69658221 Msa0926090:intron 20.0%
!! ACAAAAATGCTTAAATTACA+GGG - chr6_2:69658499-69658518 None:intergenic 20.0%
!! TACAAAAATGCTTAAATTAC+AGG - chr6_2:69658500-69658519 None:intergenic 20.0%
!! TTCTTAATGAAACTACAAAA+GGG - chr6_2:69658546-69658565 None:intergenic 20.0%
!! TTTCTTAATGAAACTACAAA+AGG - chr6_2:69658547-69658566 None:intergenic 20.0%
!!! GTAATAGAAATGATTTTGAA+TGG + chr6_2:69658976-69658995 Msa0926090:intron 20.0%
!!! TTAAATCAATTTTATGTGTC+TGG + chr6_2:69659188-69659207 Msa0926090:intron 20.0%
!! AGAACAACAATAACATTAAA+AGG - chr6_2:69659748-69659767 None:intergenic 20.0%
!!! ATATATATGTTTAGAATGTC+TGG - chr6_2:69660015-69660034 None:intergenic 20.0%
! TAATTCTACGTTTGTTTCAA+AGG + chr6_2:69658060-69658079 Msa0926090:intron 25.0%
! AATTCTACGTTTGTTTCAAA+GGG + chr6_2:69658061-69658080 Msa0926090:intron 25.0%
! TTCAATGAAAATGCTTATAG+AGG + chr6_2:69658109-69658128 Msa0926090:intron 25.0%
! TTAGTGTGAATGTTTAAAAG+GGG + chr6_2:69658177-69658196 Msa0926090:intron 25.0%
! AGTAGAATCAATTCTATTAG+AGG + chr6_2:69658361-69658380 Msa0926090:intron 25.0%
! TCTTAATGAAACTACAAAAG+GGG - chr6_2:69658545-69658564 None:intergenic 25.0%
!! TTTGACAAGTGTTGTTATTA+TGG + chr6_2:69658840-69658859 Msa0926090:intron 25.0%
! ACTAATACACAAGTTTGAAA+GGG + chr6_2:69658874-69658893 Msa0926090:intron 25.0%
!! TATCCTTAAGTTTTACCTAA+AGG - chr6_2:69658902-69658921 None:intergenic 25.0%
!!! GTGAATTATTGGTTTATGTT+TGG + chr6_2:69659027-69659046 Msa0926090:intron 25.0%
! TTTGAGTATAAAATCACCTT+TGG + chr6_2:69659083-69659102 Msa0926090:intron 25.0%
! TTGATTTAAACATGTTTGAG+TGG - chr6_2:69659177-69659196 None:intergenic 25.0%
!! AACTTTTCTAATTGTTACGA+TGG + chr6_2:69659369-69659388 Msa0926090:intron 25.0%
! ATTATTCACCTAAAAGAATG+TGG - chr6_2:69659815-69659834 None:intergenic 25.0%
! TTAGGTGAATAATTACTCTT+TGG + chr6_2:69659822-69659841 Msa0926090:three_prime_UTR 25.0%
! TGCTAAATAAGACTATTACA+CGG + chr6_2:69660040-69660059 Msa0926090:three_prime_UTR 25.0%
! TAATTCTACGTTTGTTTCAA+AGG + chr6_2:69658060-69658079 Msa0926090:intron 25.0%
! AATTCTACGTTTGTTTCAAA+GGG + chr6_2:69658061-69658080 Msa0926090:intron 25.0%
! TTCAATGAAAATGCTTATAG+AGG + chr6_2:69658109-69658128 Msa0926090:intron 25.0%
! TTAGTGTGAATGTTTAAAAG+GGG + chr6_2:69658177-69658196 Msa0926090:intron 25.0%
! AGTAGAATCAATTCTATTAG+AGG + chr6_2:69658361-69658380 Msa0926090:intron 25.0%
! TCTTAATGAAACTACAAAAG+GGG - chr6_2:69658545-69658564 None:intergenic 25.0%
!! TTTGACAAGTGTTGTTATTA+TGG + chr6_2:69658840-69658859 Msa0926090:intron 25.0%
! ACTAATACACAAGTTTGAAA+GGG + chr6_2:69658874-69658893 Msa0926090:intron 25.0%
!! TATCCTTAAGTTTTACCTAA+AGG - chr6_2:69658902-69658921 None:intergenic 25.0%
!!! GTGAATTATTGGTTTATGTT+TGG + chr6_2:69659027-69659046 Msa0926090:intron 25.0%
! TTTGAGTATAAAATCACCTT+TGG + chr6_2:69659083-69659102 Msa0926090:intron 25.0%
! TTGATTTAAACATGTTTGAG+TGG - chr6_2:69659177-69659196 None:intergenic 25.0%
!! AACTTTTCTAATTGTTACGA+TGG + chr6_2:69659369-69659388 Msa0926090:intron 25.0%
! ATTATTCACCTAAAAGAATG+TGG - chr6_2:69659815-69659834 None:intergenic 25.0%
! TTAGGTGAATAATTACTCTT+TGG + chr6_2:69659822-69659841 Msa0926090:three_prime_UTR 25.0%
! TGCTAAATAAGACTATTACA+CGG + chr6_2:69660040-69660059 Msa0926090:three_prime_UTR 25.0%
GAAAAGGTTGTTGTAAAAAG+AGG - chr6_2:69657870-69657889 None:intergenic 30.0%
ATTCTACGTTTGTTTCAAAG+GGG + chr6_2:69658062-69658081 Msa0926090:intron 30.0%
!! TTAGTGTATGTTTGGTTCTA+CGG + chr6_2:69658210-69658229 Msa0926090:intron 30.0%
! GTCACCTATAGAATCAATTT+TGG + chr6_2:69658394-69658413 Msa0926090:intron 30.0%
CAATATCATATGTGTAAGTC+TGG - chr6_2:69658437-69658456 None:intergenic 30.0%
!! AAAACATTTGGTGTCGAATA+AGG + chr6_2:69658658-69658677 Msa0926090:intron 30.0%
AAGTGTAGAAGATTAGAAGT+AGG + chr6_2:69658719-69658738 Msa0926090:intron 30.0%
GACTAATACACAAGTTTGAA+AGG + chr6_2:69658873-69658892 Msa0926090:intron 30.0%
GTACCTTTAGGTAAAACTTA+AGG + chr6_2:69658896-69658915 Msa0926090:intron 30.0%
!! AATAATCATGTTTGGTTCTG+CGG + chr6_2:69658954-69658973 Msa0926090:intron 30.0%
! GTGAGTTGAATGTGAATTAT+TGG + chr6_2:69659016-69659035 Msa0926090:intron 30.0%
!! CTCTAGAATTGATTCTAACT+TGG - chr6_2:69659132-69659151 None:intergenic 30.0%
!!! TTCATGTGTGTTTGGTTTTA+TGG - chr6_2:69659235-69659254 None:intergenic 30.0%
CATATCAACTGACATAGAAA+TGG - chr6_2:69659295-69659314 None:intergenic 30.0%
!! ATTTGCTTTTGTGATATCCA+AGG - chr6_2:69659598-69659617 None:intergenic 30.0%
! CTGCCACAAATTGATAATAT+CGG - chr6_2:69659644-69659663 None:intergenic 30.0%
TCACATTTCACATACAAACA+CGG - chr6_2:69659900-69659919 None:intergenic 30.0%
GAAAAGGTTGTTGTAAAAAG+AGG - chr6_2:69657870-69657889 None:intergenic 30.0%
ATTCTACGTTTGTTTCAAAG+GGG + chr6_2:69658062-69658081 Msa0926090:intron 30.0%
!! TTAGTGTATGTTTGGTTCTA+CGG + chr6_2:69658210-69658229 Msa0926090:intron 30.0%
! GTCACCTATAGAATCAATTT+TGG + chr6_2:69658394-69658413 Msa0926090:intron 30.0%
CAATATCATATGTGTAAGTC+TGG - chr6_2:69658437-69658456 None:intergenic 30.0%
!! AAAACATTTGGTGTCGAATA+AGG + chr6_2:69658658-69658677 Msa0926090:intron 30.0%
AAGTGTAGAAGATTAGAAGT+AGG + chr6_2:69658719-69658738 Msa0926090:intron 30.0%
GACTAATACACAAGTTTGAA+AGG + chr6_2:69658873-69658892 Msa0926090:intron 30.0%
GTACCTTTAGGTAAAACTTA+AGG + chr6_2:69658896-69658915 Msa0926090:intron 30.0%
!! AATAATCATGTTTGGTTCTG+CGG + chr6_2:69658954-69658973 Msa0926090:intron 30.0%
! GTGAGTTGAATGTGAATTAT+TGG + chr6_2:69659016-69659035 Msa0926090:intron 30.0%
!! CTCTAGAATTGATTCTAACT+TGG - chr6_2:69659132-69659151 None:intergenic 30.0%
!!! TTCATGTGTGTTTGGTTTTA+TGG - chr6_2:69659235-69659254 None:intergenic 30.0%
CATATCAACTGACATAGAAA+TGG - chr6_2:69659295-69659314 None:intergenic 30.0%
!! ATTTGCTTTTGTGATATCCA+AGG - chr6_2:69659598-69659617 None:intergenic 30.0%
! CTGCCACAAATTGATAATAT+CGG - chr6_2:69659644-69659663 None:intergenic 30.0%
TCACATTTCACATACAAACA+CGG - chr6_2:69659900-69659919 None:intergenic 30.0%
! TTATCGTGTTCTAGATAAGG+AGG - chr6_2:69657687-69657706 None:intergenic 35.0%
! GAGTTATCGTGTTCTAGATA+AGG - chr6_2:69657690-69657709 None:intergenic 35.0%
!! AAAAGAGGCTTTGAAGTTGT+TGG - chr6_2:69657855-69657874 None:intergenic 35.0%
! TTTGATGGGTCGAATTGAAA+AGG - chr6_2:69657886-69657905 None:intergenic 35.0%
!!! TGTACGCTGTTTGTTTTGAT+GGG - chr6_2:69657900-69657919 None:intergenic 35.0%
!!! ATGTACGCTGTTTGTTTTGA+TGG - chr6_2:69657901-69657920 None:intergenic 35.0%
!! GAGTGAATTGATTGAGTTGA+AGG + chr6_2:69658251-69658270 Msa0926090:intron 35.0%
GATTCTATAGGTGACATGTT+TGG - chr6_2:69658389-69658408 None:intergenic 35.0%
! GGAGCCAAAATTGATTCTAT+AGG - chr6_2:69658401-69658420 None:intergenic 35.0%
!! TGTAAGTCTGGTTTCACTTT+TGG - chr6_2:69658425-69658444 None:intergenic 35.0%
TGTCTGACCTTCAAAACATT+TGG + chr6_2:69658646-69658665 Msa0926090:intron 35.0%
!! TTCGACACCAAATGTTTTGA+AGG - chr6_2:69658656-69658675 None:intergenic 35.0%
AACACATATTGTGTCGCATA+CGG + chr6_2:69658757-69658776 Msa0926090:intron 35.0%
!! AAGTTTGAAAGGGTACCTTT+AGG + chr6_2:69658884-69658903 Msa0926090:intron 35.0%
TTTGTAGCATTTGACTCCAA+AGG - chr6_2:69659102-69659121 None:intergenic 35.0%
! AATTGATTCTAACTTGGAGC+TGG - chr6_2:69659126-69659145 None:intergenic 35.0%
!!! GTGTGTTTGGTTTTATGGTA+GGG - chr6_2:69659230-69659249 None:intergenic 35.0%
!!! TGTGTGTTTGGTTTTATGGT+AGG - chr6_2:69659231-69659250 None:intergenic 35.0%
ACATAGGTTTCATGTGTGTT+TGG - chr6_2:69659243-69659262 None:intergenic 35.0%
ACACACATGAAACCTATGTT+TGG + chr6_2:69659244-69659263 Msa0926090:intron 35.0%
ATTTGGATGGAGAAGAACAT+CGG + chr6_2:69659460-69659479 Msa0926090:CDS 35.0%
CAAAAGTAATAAGGGCTTAG+AGG - chr6_2:69659526-69659545 None:intergenic 35.0%
! CTCTAAGCCCTTATTACTTT+TGG + chr6_2:69659524-69659543 Msa0926090:CDS 35.0%
TCCTTGGCCAAAAGTAATAA+GGG - chr6_2:69659534-69659553 None:intergenic 35.0%
TTCCTTGGCCAAAAGTAATA+AGG - chr6_2:69659535-69659554 None:intergenic 35.0%
! CCACAAATTGATAATATCGG+TGG - chr6_2:69659641-69659660 None:intergenic 35.0%
CCACCGATATTATCAATTTG+TGG + chr6_2:69659638-69659657 Msa0926090:CDS 35.0%
TTATCCTACATTTGAGCCTT+AGG - chr6_2:69659689-69659708 None:intergenic 35.0%
!!! GCGATGTTTTTTCTGTCAAT+AGG + chr6_2:69659715-69659734 Msa0926090:three_prime_UTR 35.0%
!! TCACTGAACTTGTTGTTTCA+CGG + chr6_2:69659860-69659879 Msa0926090:three_prime_UTR 35.0%
! TTATCGTGTTCTAGATAAGG+AGG - chr6_2:69657687-69657706 None:intergenic 35.0%
! GAGTTATCGTGTTCTAGATA+AGG - chr6_2:69657690-69657709 None:intergenic 35.0%
!! AAAAGAGGCTTTGAAGTTGT+TGG - chr6_2:69657855-69657874 None:intergenic 35.0%
! TTTGATGGGTCGAATTGAAA+AGG - chr6_2:69657886-69657905 None:intergenic 35.0%
!!! TGTACGCTGTTTGTTTTGAT+GGG - chr6_2:69657900-69657919 None:intergenic 35.0%
!!! ATGTACGCTGTTTGTTTTGA+TGG - chr6_2:69657901-69657920 None:intergenic 35.0%
!! GAGTGAATTGATTGAGTTGA+AGG + chr6_2:69658251-69658270 Msa0926090:intron 35.0%
GATTCTATAGGTGACATGTT+TGG - chr6_2:69658389-69658408 None:intergenic 35.0%
! GGAGCCAAAATTGATTCTAT+AGG - chr6_2:69658401-69658420 None:intergenic 35.0%
!! TGTAAGTCTGGTTTCACTTT+TGG - chr6_2:69658425-69658444 None:intergenic 35.0%
TGTCTGACCTTCAAAACATT+TGG + chr6_2:69658646-69658665 Msa0926090:intron 35.0%
!! TTCGACACCAAATGTTTTGA+AGG - chr6_2:69658656-69658675 None:intergenic 35.0%
AACACATATTGTGTCGCATA+CGG + chr6_2:69658757-69658776 Msa0926090:intron 35.0%
!! AAGTTTGAAAGGGTACCTTT+AGG + chr6_2:69658884-69658903 Msa0926090:intron 35.0%
TTTGTAGCATTTGACTCCAA+AGG - chr6_2:69659102-69659121 None:intergenic 35.0%
! AATTGATTCTAACTTGGAGC+TGG - chr6_2:69659126-69659145 None:intergenic 35.0%
!!! GTGTGTTTGGTTTTATGGTA+GGG - chr6_2:69659230-69659249 None:intergenic 35.0%
!!! TGTGTGTTTGGTTTTATGGT+AGG - chr6_2:69659231-69659250 None:intergenic 35.0%
ACATAGGTTTCATGTGTGTT+TGG - chr6_2:69659243-69659262 None:intergenic 35.0%
ACACACATGAAACCTATGTT+TGG + chr6_2:69659244-69659263 Msa0926090:intron 35.0%
ATTTGGATGGAGAAGAACAT+CGG + chr6_2:69659460-69659479 Msa0926090:CDS 35.0%
CAAAAGTAATAAGGGCTTAG+AGG - chr6_2:69659526-69659545 None:intergenic 35.0%
! CTCTAAGCCCTTATTACTTT+TGG + chr6_2:69659524-69659543 Msa0926090:CDS 35.0%
TCCTTGGCCAAAAGTAATAA+GGG - chr6_2:69659534-69659553 None:intergenic 35.0%
TTCCTTGGCCAAAAGTAATA+AGG - chr6_2:69659535-69659554 None:intergenic 35.0%
! CCACAAATTGATAATATCGG+TGG - chr6_2:69659641-69659660 None:intergenic 35.0%
CCACCGATATTATCAATTTG+TGG + chr6_2:69659638-69659657 Msa0926090:CDS 35.0%
TTATCCTACATTTGAGCCTT+AGG - chr6_2:69659689-69659708 None:intergenic 35.0%
!!! GCGATGTTTTTTCTGTCAAT+AGG + chr6_2:69659715-69659734 Msa0926090:three_prime_UTR 35.0%
!! TCACTGAACTTGTTGTTTCA+CGG + chr6_2:69659860-69659879 Msa0926090:three_prime_UTR 35.0%
TAGAACACGATAACTCACTC+TGG + chr6_2:69657694-69657713 Msa0926090:five_prime_UTR 40.0%
CAAGAGCAGAAACAGTAAAG+CGG - chr6_2:69657950-69657969 None:intergenic 40.0%
!! AAGTCTGGTTTCACTTTTGG+AGG - chr6_2:69658422-69658441 None:intergenic 40.0%
TAGCTTCTGCATCCAAACAT+AGG - chr6_2:69659259-69659278 None:intergenic 40.0%
GTTGTTGTGATGTAGAAGCT+AGG + chr6_2:69659391-69659410 Msa0926090:intron 40.0%
ATGAACTTCAACACGAGTCT+TGG - chr6_2:69659442-69659461 None:intergenic 40.0%
GACTCGTGTTGAAGTTCATT+TGG + chr6_2:69659443-69659462 Msa0926090:CDS 40.0%
CGTGTTGAAGTTCATTTGGA+TGG + chr6_2:69659447-69659466 Msa0926090:CDS 40.0%
ATGGAGAAGAACATCGGTAT+TGG + chr6_2:69659466-69659485 Msa0926090:CDS 40.0%
GTAATAAGGGCTTAGAGGAA+TGG - chr6_2:69659521-69659540 None:intergenic 40.0%
! GACAAGTGCCACATTCTTTT+AGG + chr6_2:69659804-69659823 Msa0926090:three_prime_UTR 40.0%
TAGAACACGATAACTCACTC+TGG + chr6_2:69657694-69657713 Msa0926090:five_prime_UTR 40.0%
CAAGAGCAGAAACAGTAAAG+CGG - chr6_2:69657950-69657969 None:intergenic 40.0%
!! AAGTCTGGTTTCACTTTTGG+AGG - chr6_2:69658422-69658441 None:intergenic 40.0%
TAGCTTCTGCATCCAAACAT+AGG - chr6_2:69659259-69659278 None:intergenic 40.0%
GTTGTTGTGATGTAGAAGCT+AGG + chr6_2:69659391-69659410 Msa0926090:intron 40.0%
ATGAACTTCAACACGAGTCT+TGG - chr6_2:69659442-69659461 None:intergenic 40.0%
GACTCGTGTTGAAGTTCATT+TGG + chr6_2:69659443-69659462 Msa0926090:CDS 40.0%
CGTGTTGAAGTTCATTTGGA+TGG + chr6_2:69659447-69659466 Msa0926090:CDS 40.0%
ATGGAGAAGAACATCGGTAT+TGG + chr6_2:69659466-69659485 Msa0926090:CDS 40.0%
GTAATAAGGGCTTAGAGGAA+TGG - chr6_2:69659521-69659540 None:intergenic 40.0%
! GACAAGTGCCACATTCTTTT+AGG + chr6_2:69659804-69659823 Msa0926090:three_prime_UTR 40.0%
AGAGAGAGAACCTGAGATTG+AGG - chr6_2:69658029-69658048 None:intergenic 45.0%
TGTGATGTAGAAGCTAGGAG+TGG + chr6_2:69659396-69659415 Msa0926090:intron 45.0%
!! ACGAGTCTTGGTTTGTCTGT+TGG - chr6_2:69659430-69659449 None:intergenic 45.0%
GGACTTGACCAATTGATACC+TGG + chr6_2:69659487-69659506 Msa0926090:CDS 45.0%
TTCCATGGCCAGGTATCAAT+TGG - chr6_2:69659498-69659517 None:intergenic 45.0%
!! GCCCTTATTACTTTTGGCCA+AGG + chr6_2:69659530-69659549 Msa0926090:CDS 45.0%
TTTGGCCAAGGAAAGATGCT+TGG + chr6_2:69659542-69659561 Msa0926090:CDS 45.0%
TTGGCCAAGGAAAGATGCTT+GGG + chr6_2:69659543-69659562 Msa0926090:CDS 45.0%
TCTTCCCAAGCATCTTTCCT+TGG - chr6_2:69659550-69659569 None:intergenic 45.0%
AGATGCTTGGGAAGAACTCA+AGG + chr6_2:69659555-69659574 Msa0926090:CDS 45.0%
AGTTGCTAGAGAGTAAGCCT+TGG + chr6_2:69659578-69659597 Msa0926090:CDS 45.0%
ATCAATTTGTGGCAGCAGAG+CGG + chr6_2:69659649-69659668 Msa0926090:CDS 45.0%
TCCTCCTAAGGCTCAAATGT+AGG + chr6_2:69659682-69659701 Msa0926090:exon 45.0%
TCCTACATTTGAGCCTTAGG+AGG - chr6_2:69659686-69659705 None:intergenic 45.0%
AGAGAGAGAACCTGAGATTG+AGG - chr6_2:69658029-69658048 None:intergenic 45.0%
TGTGATGTAGAAGCTAGGAG+TGG + chr6_2:69659396-69659415 Msa0926090:intron 45.0%
!! ACGAGTCTTGGTTTGTCTGT+TGG - chr6_2:69659430-69659449 None:intergenic 45.0%
GGACTTGACCAATTGATACC+TGG + chr6_2:69659487-69659506 Msa0926090:CDS 45.0%
TTCCATGGCCAGGTATCAAT+TGG - chr6_2:69659498-69659517 None:intergenic 45.0%
!! GCCCTTATTACTTTTGGCCA+AGG + chr6_2:69659530-69659549 Msa0926090:CDS 45.0%
TTTGGCCAAGGAAAGATGCT+TGG + chr6_2:69659542-69659561 Msa0926090:CDS 45.0%
TTGGCCAAGGAAAGATGCTT+GGG + chr6_2:69659543-69659562 Msa0926090:CDS 45.0%
TCTTCCCAAGCATCTTTCCT+TGG - chr6_2:69659550-69659569 None:intergenic 45.0%
AGATGCTTGGGAAGAACTCA+AGG + chr6_2:69659555-69659574 Msa0926090:CDS 45.0%
AGTTGCTAGAGAGTAAGCCT+TGG + chr6_2:69659578-69659597 Msa0926090:CDS 45.0%
ATCAATTTGTGGCAGCAGAG+CGG + chr6_2:69659649-69659668 Msa0926090:CDS 45.0%
TCCTCCTAAGGCTCAAATGT+AGG + chr6_2:69659682-69659701 Msa0926090:exon 45.0%
TCCTACATTTGAGCCTTAGG+AGG - chr6_2:69659686-69659705 None:intergenic 45.0%
TGGAGGTTGAAGAGAAGGAG+AGG - chr6_2:69658006-69658025 None:intergenic 50.0%
TGAGGTGGAGGTTGAAGAGA+AGG - chr6_2:69658011-69658030 None:intergenic 50.0%
TCAACCTCCACCTCAATCTC+AGG + chr6_2:69658016-69658035 Msa0926090:CDS 50.0%
AGAACCTGAGATTGAGGTGG+AGG - chr6_2:69658023-69658042 None:intergenic 50.0%
GAGAGAACCTGAGATTGAGG+TGG - chr6_2:69658026-69658045 None:intergenic 50.0%
GACCAATTGATACCTGGCCA+TGG + chr6_2:69659493-69659512 Msa0926090:CDS 50.0%
GGCTTAGAGGAATGGTTCCA+TGG - chr6_2:69659513-69659532 None:intergenic 50.0%
TGGAGGTTGAAGAGAAGGAG+AGG - chr6_2:69658006-69658025 None:intergenic 50.0%
TGAGGTGGAGGTTGAAGAGA+AGG - chr6_2:69658011-69658030 None:intergenic 50.0%
TCAACCTCCACCTCAATCTC+AGG + chr6_2:69658016-69658035 Msa0926090:CDS 50.0%
AGAACCTGAGATTGAGGTGG+AGG - chr6_2:69658023-69658042 None:intergenic 50.0%
GAGAGAACCTGAGATTGAGG+TGG - chr6_2:69658026-69658045 None:intergenic 50.0%
GACCAATTGATACCTGGCCA+TGG + chr6_2:69659493-69659512 Msa0926090:CDS 50.0%
GGCTTAGAGGAATGGTTCCA+TGG - chr6_2:69659513-69659532 None:intergenic 50.0%
AGAGGAATGGTTCCATGGCC+AGG - chr6_2:69659508-69659527 None:intergenic 55.0%
AATTTGTGGCAGCAGAGCGG+CGG + chr6_2:69659652-69659671 Msa0926090:CDS 55.0%
! GGCGGTAACTTGTCCTCCTA+AGG + chr6_2:69659670-69659689 Msa0926090:CDS 55.0%
AGAGGAATGGTTCCATGGCC+AGG - chr6_2:69659508-69659527 None:intergenic 55.0%
AATTTGTGGCAGCAGAGCGG+CGG + chr6_2:69659652-69659671 Msa0926090:CDS 55.0%
! GGCGGTAACTTGTCCTCCTA+AGG + chr6_2:69659670-69659689 Msa0926090:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 69657681 69660075 69657681 ID=Msa0926090;Name=Msa0926090
chr6_2 mRNA 69657681 69660075 69657681 ID=Msa0926090-mRNA-1;Parent=Msa0926090;Name=Msa0926090-mRNA-1;_AED=0.01;_eAED=0.01;_QI=114|1|1|1|1|1|2|385|175
chr6_2 exon 69657681 69658037 69657681 ID=Msa0926090-mRNA-1:exon:11246;Parent=Msa0926090-mRNA-1
chr6_2 exon 69659406 69660075 69659406 ID=Msa0926090-mRNA-1:exon:11247;Parent=Msa0926090-mRNA-1
chr6_2 five_prime_UTR 69657681 69657794 69657681 ID=Msa0926090-mRNA-1:five_prime_utr;Parent=Msa0926090-mRNA-1
chr6_2 CDS 69657795 69658037 69657795 ID=Msa0926090-mRNA-1:cds;Parent=Msa0926090-mRNA-1
chr6_2 CDS 69659406 69659690 69659406 ID=Msa0926090-mRNA-1:cds;Parent=Msa0926090-mRNA-1
chr6_2 three_prime_UTR 69659691 69660075 69659691 ID=Msa0926090-mRNA-1:three_prime_utr;Parent=Msa0926090-mRNA-1
Gene Sequence

>Msa0926090

ATGAACATGTTAGCATCATCATCATCAACAACAACAACATCAATGTCTGTTCTTCTTCCAACAACTTCAAAGCCTCTTTTTACAACAACCTTTTCAATTCGACCCATCAAAACAAACAGCGTACATATGAACAAGTTGAAGATGAAAACTAACCGCTTTACTGTTTCTGCTCTTGTTGCTGAAGATGATGCTGCTGTTTCTTCTCAATCCTCTCCTTCTCTTCAACCTCCACCTCAATCTCAGAAGCTAGGAGTGGTTGTGAAACCAACAGACAAACCAAGACTCGTGTTGAAGTTCATTTGGATGGAGAAGAACATCGGTATTGGACTTGACCAATTGATACCTGGCCATGGAACCATTCCTCTAAGCCCTTATTACTTTTGGCCAAGGAAAGATGCTTGGGAAGAACTCAAGGAGTTGCTAGAGAGTAAGCCTTGGATATCACAAAAGCAAATGATTATTCTTCTCAATCAAGCCACCGATATTATCAATTTGTGGCAGCAGAGCGGCGGTAACTTGTCCTCCTAA

Protein sequence

>Msa0926090

MNMLASSSSTTTTSMSVLLPTTSKPLFTTTFSIRPIKTNSVHMNKLKMKTNRFTVSALVAEDDAAVSSQSSPSLQPPPQSQKLGVVVKPTDKPRLVLKFIWMEKNIGIGLDQLIPGHGTIPLSPYYFWPRKDAWEELKELLESKPWISQKQMIILLNQATDIINLWQQSGGNLSS*