AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0377560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377560 MtrunA17_Chr3g0128891 97.122 417 12 0 1 417 1 417 0.0 845
Msa0377560 MtrunA17_Chr6g0455421 26.346 353 220 12 74 402 210 546 1.14e-21 97.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377560 AT3G56330.1 63.476 397 143 1 18 412 35 431 0.0 540
Msa0377560 AT5G15810.1 24.419 344 236 8 74 401 123 458 3.66e-19 90.1
Msa0377560 AT3G02320.1 24.324 370 248 10 52 401 101 458 4.04e-17 84.0

Find 145 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGTTCTTTAGCTGCTTA+TGG 0.167466 3_1:-78167834 Msa0377560:intron
GCTATCATTACTTTGAAATT+TGG 0.203394 3_1:-78168719 Msa0377560:CDS
AAATCAATACTCCACCTCTT+AGG 0.208380 3_1:-78165709 Msa0377560:CDS
AGGGGACATACTTCATATTT+TGG 0.210714 3_1:-78164854 Msa0377560:three_prime_UTR
TCAACTGATGGTTTCTCTTC+TGG 0.214021 3_1:-78168677 Msa0377560:CDS
TGCCGGTATCTGTCTCTTAA+TGG 0.225155 3_1:-78165016 Msa0377560:exon
TTCATTGATGTTGACTCTTT+TGG 0.235166 3_1:-78168767 Msa0377560:CDS
TGTCAGGGAGGCTGCATTGT+TGG 0.250036 3_1:-78167748 Msa0377560:CDS
GTCAGGGAGGCTGCATTGTT+GGG 0.255296 3_1:-78167747 Msa0377560:CDS
TGCTTATAGGCGGGGTTGTC+AGG 0.255906 3_1:-78167764 Msa0377560:CDS
TTTCTTTCTTCATCAGTCTA+AGG 0.257474 3_1:-78169289 Msa0377560:five_prime_UTR
ATTTCTAATGGAGGCTTCTT+TGG 0.267322 3_1:-78164706 Msa0377560:three_prime_UTR
ACCTTATATAATCCCATAAA+AGG 0.272404 3_1:-78169484 Msa0377560:five_prime_UTR
ATTGGTTTGCGAATGCTTAT+AGG 0.273451 3_1:-78167777 Msa0377560:CDS
TGTGATTGCTGTAGACATTA+TGG 0.290218 3_1:-78167544 Msa0377560:intron
TTCTCAAACGGAACGTGGTT+TGG 0.290253 3_1:-78169116 Msa0377560:CDS
AGGCTGATGTTGATATAAAT+AGG 0.313209 3_1:-78164878 Msa0377560:three_prime_UTR
GTGACCCCAGGTTGCCATTT+GGG 0.321091 3_1:-78165856 Msa0377560:CDS
TCAGACTCGCTTAAGGTATC+AGG 0.326059 3_1:-78166013 Msa0377560:CDS
GGAGAATTTGAGTCGGGTTT+CGG 0.326905 3_1:-78168876 Msa0377560:CDS
TATTTAATCATTCATTTCTC+TGG 0.345554 3_1:-78164759 Msa0377560:three_prime_UTR
TTGATGCACTTTGTGGTTGC+GGG 0.347797 3_1:-78168985 Msa0377560:CDS
TCCGTTTGAGAAACGTTTCC+AGG 0.355207 3_1:+78169127 None:intergenic
TTAAGGTATCAGGACCTCTT+TGG 0.359066 3_1:-78166003 Msa0377560:CDS
ATCTCGTTTGAATATGTCAT+AGG 0.371894 3_1:+78167798 None:intergenic
CGATGTTGTTGTCTTTGTCT+TGG 0.377343 3_1:-78169213 Msa0377560:CDS
GTATCTGTCTCTTAATGGTT+TGG 0.380877 3_1:-78165011 Msa0377560:exon
CTTAATGGTTTGGCCTCTAA+AGG 0.384391 3_1:-78165001 Msa0377560:exon
ATTCTCCGCAGAAGCATTCT+CGG 0.385655 3_1:-78169171 Msa0377560:CDS
GTCCGGTGGCGCTTTCTTGA+CGG 0.386557 3_1:+78169068 None:intergenic
TCTAAATTATGCATTTCTAA+TGG 0.390006 3_1:-78164718 Msa0377560:three_prime_UTR
ATGCTCAGAGGAACCTTTAG+AGG 0.391287 3_1:+78164988 None:intergenic
ATGACATATTCAAACGAGAT+TGG 0.394373 3_1:-78167795 Msa0377560:CDS
TGCAGCTTCCTTGCAGAAGA+AGG 0.398526 3_1:-78169029 Msa0377560:CDS
CTGAGCAAGACCCGGAAAAC+AGG 0.402440 3_1:+78167681 None:intergenic
CGTGTTCTTGATGCACTTTG+TGG 0.405770 3_1:-78168992 Msa0377560:CDS
CACTTTGTGGTTGCGGGATA+CGG 0.407311 3_1:-78168979 Msa0377560:CDS
AATCAATACTCCACCTCTTA+GGG 0.418319 3_1:-78165708 Msa0377560:CDS
CCAGGTTTCAGACTCGCTTA+AGG 0.425418 3_1:-78166020 Msa0377560:intron
TTCTTTCTTCATCAGTCTAA+GGG 0.428406 3_1:-78169288 Msa0377560:five_prime_UTR
TTAATGTTCACATGAGTTGA+AGG 0.430280 3_1:-78164962 Msa0377560:three_prime_UTR
CTTTATGTCACTTCAACTGA+TGG 0.431973 3_1:-78168689 Msa0377560:CDS
TCCTTGCAGAAGAAGGCTAA+TGG 0.432598 3_1:-78169022 Msa0377560:CDS
GATATACCCAAATGGCAACC+TGG 0.432960 3_1:+78165850 None:intergenic
TCCTGGAAACGTTTCTCAAA+CGG 0.434943 3_1:-78169128 Msa0377560:CDS
ACGAAAACAAGGGAGTTATA+TGG 0.435228 3_1:+78167721 None:intergenic
CTTGATGCACTTTGTGGTTG+CGG 0.436079 3_1:-78168986 Msa0377560:CDS
AGTGACCCCAGGTTGCCATT+TGG 0.437494 3_1:-78165857 Msa0377560:CDS
ATCATTACTTTGAAATTTGG+TGG 0.439529 3_1:-78168716 Msa0377560:CDS
GCCAAGCAGTGGGGATGGAT+TGG 0.442704 3_1:-78165932 Msa0377560:CDS
TATAGCTAAAGAACTATTGC+CGG 0.443111 3_1:-78165033 Msa0377560:CDS
AATTGAGGAGAATTTGAGTC+GGG 0.454310 3_1:-78168882 Msa0377560:CDS
TAGTAATAGTGAAGCATTTG+AGG 0.474582 3_1:-78164898 Msa0377560:three_prime_UTR
CTCGTGCAGGGCGCTCATCA+AGG 0.477774 3_1:+78165685 None:intergenic
TCATAGAGTTGCTTTGTGAC+TGG 0.478652 3_1:+78164664 None:intergenic
CGGCGAAAGAAGAGGAAAGA+TGG 0.482786 3_1:-78168856 Msa0377560:CDS
TCATGATGCTGCATATCTTA+CGG 0.488223 3_1:-78165969 Msa0377560:CDS
ACTGATGGTTTCTCTTCTGG+TGG 0.490556 3_1:-78168674 Msa0377560:CDS
TTGTGAGTTAATTAAAATGA+GGG 0.492305 3_1:+78169342 None:intergenic
TAGAAACCATGTTGCAATGT+GGG 0.499275 3_1:+78169563 None:intergenic
GTATCAGGACCTCTTTGGAC+AGG 0.504615 3_1:-78165998 Msa0377560:CDS
ATCTGGCCAAGCAGTGGGGA+TGG 0.507155 3_1:-78165937 Msa0377560:CDS
ACGGTCGGCGCGGTATTTGA+AGG 0.509215 3_1:-78168960 Msa0377560:CDS
TTTGTGAGTTAATTAAAATG+AGG 0.510649 3_1:+78169341 None:intergenic
TCTTACGGATATGTTAGATC+TGG 0.511156 3_1:-78165954 Msa0377560:CDS
GCTTATAGGCGGGGTTGTCA+GGG 0.511350 3_1:-78167763 Msa0377560:CDS
CAGCTGAGTGGAATGTCAAA+AGG 0.512417 3_1:+78164791 None:intergenic
TGATGTTGATATAAATAGGA+AGG 0.520359 3_1:-78164874 Msa0377560:three_prime_UTR
TGGGGATGGATTGGTTGTGA+TGG 0.523059 3_1:-78165923 Msa0377560:CDS
AGCGCCACCGGACGTGACCT+CGG 0.524212 3_1:-78169058 Msa0377560:CDS
TCAGGGAGGCTGCATTGTTG+GGG 0.525127 3_1:-78167746 Msa0377560:CDS
GTTTCTCTTCTGGTGGACAC+AGG 0.525712 3_1:-78168667 Msa0377560:CDS
ACCAATCCATCCCCACTGCT+TGG 0.526173 3_1:+78165931 None:intergenic
GTTTGCGAATGCTTATAGGC+GGG 0.526475 3_1:-78167773 Msa0377560:CDS
GAATGCTTCTGCGGAGAATG+AGG 0.527706 3_1:+78169175 None:intergenic
AAGAACTCCGAGGTCACGTC+CGG 0.529717 3_1:+78169051 None:intergenic
GCCATTTGGGTATATCAAGT+TGG 0.531607 3_1:-78165843 Msa0377560:CDS
AATGATGGAAATGAGAGCTA+TGG 0.531886 3_1:-78168911 Msa0377560:CDS
AATTTCCACACTGGTCGCAT+TGG 0.532664 3_1:+78167512 None:intergenic
GTTGGTCCCAAGAAAACTCA+TGG 0.536292 3_1:+78167488 None:intergenic
GTTAGATCTGGCCAAGCAGT+GGG 0.541656 3_1:-78165942 Msa0377560:CDS
TCTTGCTCAGATTGAATCGC+GGG 0.544510 3_1:-78167668 Msa0377560:CDS
AGAAGGGTTATGCTGCGAGC+AGG 0.547371 3_1:-78165112 Msa0377560:CDS
GCGCTCATCAAGGCCCTAAG+AGG 0.548089 3_1:+78165695 None:intergenic
AACTCACAAAACACGTGTAA+CGG 0.548624 3_1:-78169328 Msa0377560:five_prime_UTR
ATATACCCAAATGGCAACCT+GGG 0.548650 3_1:+78165851 None:intergenic
GCGGGAAGCTTCATGATAGT+AGG 0.550760 3_1:-78167650 Msa0377560:intron
CTTGATGAGCGCCCTGCACG+AGG 0.550935 3_1:-78165684 Msa0377560:intron
AAATTATGCATTTCTAATGG+AGG 0.551504 3_1:-78164715 Msa0377560:three_prime_UTR
AACGTTTCTCAAACGGAACG+TGG 0.551995 3_1:-78169121 Msa0377560:CDS
TCCAACTTGATATACCCAAA+TGG 0.552417 3_1:+78165842 None:intergenic
TGGGTATATCAAGTTGGATG+AGG 0.554171 3_1:-78165837 Msa0377560:intron
TTGTGGTTGCGGGATACGGT+CGG 0.555656 3_1:-78168975 Msa0377560:CDS
TACCGTCAAGAAAGCGCCAC+CGG 0.558477 3_1:-78169070 Msa0377560:CDS
TCCATTAGCCTTCTTCTGCA+AGG 0.561512 3_1:+78169021 None:intergenic
TCGGGTTTCGGCGAAAGAAG+AGG 0.562272 3_1:-78168864 Msa0377560:CDS
TCTCGTTTGAATATGTCATA+GGG 0.566934 3_1:+78167799 None:intergenic
TGAAAAGCTTATAAAACAGA+TGG 0.567081 3_1:-78165888 Msa0377560:CDS
CTCATCAAGGCCCTAAGAGG+TGG 0.569465 3_1:+78165698 None:intergenic
GGTTTGCGAATGCTTATAGG+CGG 0.570509 3_1:-78167774 Msa0377560:CDS
TTGCTCCTGCAGTGTGTCAA+AGG 0.578026 3_1:-78167452 Msa0377560:intron
AACCATTAAGAGACAGATAC+CGG 0.579125 3_1:+78165014 None:intergenic
GAGCTATGGAAGGATAATTG+AGG 0.582471 3_1:-78168897 Msa0377560:CDS
AACTCCGAGGTCACGTCCGG+TGG 0.582476 3_1:+78169054 None:intergenic
ATGAAGTTGTTGATCATGCA+AGG 0.583096 3_1:-78164828 Msa0377560:three_prime_UTR
TGTTAGATCTGGCCAAGCAG+TGG 0.583759 3_1:-78165943 Msa0377560:CDS
AAAGCTTATAAAACAGATGG+TGG 0.586301 3_1:-78165885 Msa0377560:CDS
TTTGCGAATGCTTATAGGCG+GGG 0.586700 3_1:-78167772 Msa0377560:CDS
GATGTTGATATAAATAGGAA+GGG 0.593384 3_1:-78164873 Msa0377560:three_prime_UTR
TATAGGCGGGGTTGTCAGGG+AGG 0.594149 3_1:-78167760 Msa0377560:CDS
GGCGAAAGAAGAGGAAAGAT+GGG 0.603219 3_1:-78168855 Msa0377560:CDS
CCATACCTTTGACACACTGC+AGG 0.605142 3_1:+78167447 None:intergenic
TATACTAATGAATTCTGTCA+TGG 0.605433 3_1:+78165052 None:intergenic
AGATATGCAGCATCATGAAG+AGG 0.611576 3_1:+78165974 None:intergenic
GATTCAATCTGAGCAAGACC+CGG 0.614625 3_1:+78167673 None:intergenic
AGCAACTCATCTGACCAAGT+TGG 0.616072 3_1:+78167470 None:intergenic
ATGGAAATGAGAGCTATGGA+AGG 0.618281 3_1:-78168907 Msa0377560:CDS
TCTTTCTTCATCAGTCTAAG+GGG 0.619065 3_1:-78169287 Msa0377560:five_prime_UTR
TAATTGAGGAGAATTTGAGT+CGG 0.619319 3_1:-78168883 Msa0377560:CDS
AGAAACCATGTTGCAATGTG+GGG 0.622828 3_1:+78169564 None:intergenic
TTGACGGTAAAATGCACCGC+CGG 0.623040 3_1:+78169084 None:intergenic
GAACAGCATTCTTACTGATG+AGG 0.626718 3_1:+78168644 None:intergenic
CTAGAAACCATGTTGCAATG+TGG 0.627097 3_1:+78169562 None:intergenic
TATCAGGACCTCTTTGGACA+GGG 0.628853 3_1:-78165997 Msa0377560:CDS
GTGGGCCCCACATTGCAACA+TGG 0.633974 3_1:-78169569 None:intergenic
TGGTGGATGAAAGTGACCCC+AGG 0.634109 3_1:-78165868 Msa0377560:CDS
CGTGGTTTGGAATTCAACAC+CGG 0.634880 3_1:-78169103 Msa0377560:CDS
ATGTTGATATAAATAGGAAG+GGG 0.634964 3_1:-78164872 Msa0377560:three_prime_UTR
CAAGACAAAGACAACAACAT+CGG 0.636852 3_1:+78169214 None:intergenic
TTGGTCCCAAGAAAACTCAT+GGG 0.648179 3_1:+78167489 None:intergenic
TGAAGAGGCCCTGTCCAAAG+AGG 0.649312 3_1:+78165989 None:intergenic
ATAAGCATAGTACGAAAACA+AGG 0.651215 3_1:+78167710 None:intergenic
GTCTTGCTCAGATTGAATCG+CGG 0.662940 3_1:-78167669 Msa0377560:CDS
TGACACCGAGAATGCTTCTG+CGG 0.667816 3_1:+78169166 None:intergenic
ATTGGCCAATGCGACCAGTG+TGG 0.674765 3_1:-78167517 Msa0377560:CDS
ATAATGCATGACCAGCTGAG+TGG 0.686765 3_1:+78164779 None:intergenic
GGTTTGGAATTCAACACCGG+CGG 0.687116 3_1:-78169100 Msa0377560:CDS
ACTCATGGGAATTTCCACAC+TGG 0.697108 3_1:+78167503 None:intergenic
GAACATTAACAAATGCTCAG+AGG 0.703894 3_1:+78164976 None:intergenic
TAAGCATAGTACGAAAACAA+GGG 0.714278 3_1:+78167711 None:intergenic
GAAAGAAGAGGAAAGATGGG+TGG 0.716195 3_1:-78168852 Msa0377560:CDS
GTTGCGGGATACGGTCGGCG+CGG 0.719001 3_1:-78168970 Msa0377560:CDS
AGGAAGCTGCAAGAACTCCG+AGG 0.730697 3_1:+78169041 None:intergenic
TATACCCAAATGGCAACCTG+GGG 0.735324 3_1:+78165852 None:intergenic
TTAGATCTGGCCAAGCAGTG+GGG 0.745563 3_1:-78165941 Msa0377560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTGACTATATTTTTTTTAT+TGG - chr3_1:78166235-78166254 Msa0377560:intron 15.0%
!!! CTATTTTAAAATTGTGTTAA+AGG - chr3_1:78168639-78168658 Msa0377560:intron 15.0%
!! TTATGTATGTATAAAAATGA+AGG - chr3_1:78168911-78168930 Msa0377560:CDS 15.0%
!! TATGTATGTATAAAAATGAA+GGG - chr3_1:78168912-78168931 Msa0377560:CDS 15.0%
!!! TTTTTGGATTTTCCTTTTAT+GGG + chr3_1:78164737-78164756 None:intergenic 20.0%
!!! TTTTTTGGATTTTCCTTTTA+TGG + chr3_1:78164738-78164757 None:intergenic 20.0%
!! GAAATTTGAAAAATTGAAGT+GGG + chr3_1:78164801-78164820 None:intergenic 20.0%
!! TGAAATTTGAAAAATTGAAG+TGG + chr3_1:78164802-78164821 None:intergenic 20.0%
!!! TAAAATGAGGGATATTTTTA+CGG + chr3_1:78164855-78164874 None:intergenic 20.0%
!! TTGTGAGTTAATTAAAATGA+GGG + chr3_1:78164867-78164886 None:intergenic 20.0%
!! TTTGTGAGTTAATTAAAATG+AGG + chr3_1:78164868-78164887 None:intergenic 20.0%
!!! AAAATTCAGTTACTTCTTTT+CGG - chr3_1:78164959-78164978 Msa0377560:three_prime_UTR 20.0%
!!! ATCAAACTCATTTTAAAACA+AGG + chr3_1:78166035-78166054 None:intergenic 20.0%
!!! TTTGATTTGTGTAGTTTAAT+AGG - chr3_1:78166265-78166284 Msa0377560:intron 20.0%
!!! GTTTTTTAGTGTTTATTTAC+TGG - chr3_1:78166811-78166830 Msa0377560:intron 20.0%
!! AACAGTTTAAATAGGAATTT+AGG + chr3_1:78166930-78166949 None:intergenic 20.0%
!! AAGTAAAAGAAAATTCAGTA+GGG + chr3_1:78167831-78167850 None:intergenic 20.0%
!! TGAAAAATATGAATCCAAAA+GGG + chr3_1:78167980-78167999 None:intergenic 20.0%
!! ATGAAAAATATGAATCCAAA+AGG + chr3_1:78167981-78168000 None:intergenic 20.0%
!!! AGAGTATTTTATACAATCAT+AGG + chr3_1:78168151-78168170 None:intergenic 20.0%
!!! ACTCTAAAAGTTCTTTAATT+TGG - chr3_1:78168546-78168565 Msa0377560:intron 20.0%
!! TAAAAGAATCAAAGTCATAA+TGG - chr3_1:78168569-78168588 Msa0377560:intron 20.0%
!! AATTGCATTTAGATATGATT+AGG - chr3_1:78168777-78168796 Msa0377560:CDS 20.0%
!!! ATTTGTTTTAATTGCATTTG+CGG + chr3_1:78169130-78169149 None:intergenic 20.0%
!! TATTTAATCATTCATTTCTC+TGG - chr3_1:78169447-78169466 Msa0377560:five_prime_UTR 20.0%
!! TCTAAATTATGCATTTCTAA+TGG - chr3_1:78169488-78169507 Msa0377560:five_prime_UTR 20.0%
! ACCTTATATAATCCCATAAA+AGG - chr3_1:78164722-78164741 Msa0377560:three_prime_UTR 25.0%
!! TCCTTTTATGGGATTATATA+AGG + chr3_1:78164726-78164745 None:intergenic 25.0%
!!! TTCGTTCTTATCTTGTTTTT+TGG + chr3_1:78164753-78164772 None:intergenic 25.0%
!!! GCTATCATTACTTTGAAATT+TGG - chr3_1:78165487-78165506 Msa0377560:intron 25.0%
!!! ATCATTACTTTGAAATTTGG+TGG - chr3_1:78165490-78165509 Msa0377560:intron 25.0%
! TCTGATTTCATAATCTATCT+TGG + chr3_1:78165788-78165807 None:intergenic 25.0%
! AATAAGTTGTTTATCCAAAC+TGG - chr3_1:78165921-78165940 Msa0377560:CDS 25.0%
! ATAAGTTGTTTATCCAAACT+GGG - chr3_1:78165922-78165941 Msa0377560:CDS 25.0%
!!! TTTGTGTAGTGTAATTTGTT+TGG - chr3_1:78166071-78166090 Msa0377560:intron 25.0%
!!! TTGTATACTGTAATGGATTT+AGG - chr3_1:78166311-78166330 Msa0377560:intron 25.0%
! AATCAAATGAAAACAACACA+AGG + chr3_1:78166608-78166627 None:intergenic 25.0%
!!! TGTAGACATTATGGTTTTAT+TGG - chr3_1:78166671-78166690 Msa0377560:intron 25.0%
! ATTGCTAGATAATAACTTCT+CGG - chr3_1:78166875-78166894 Msa0377560:intron 25.0%
! AAGTAAAAGCAAATTCAGTA+GGG + chr3_1:78167003-78167022 None:intergenic 25.0%
! TTACCAAGTAAAAGCAAATT+CGG + chr3_1:78167008-78167027 None:intergenic 25.0%
! AAGTAAAAGCAAATTCAGTA+GGG + chr3_1:78167003-78167022 None:intergenic 25.0%
! AAGTAAAAGCAAATTCAGTA+GGG + chr3_1:78167003-78167022 None:intergenic 25.0%
! AAGTAAAAGCAAATTCAGTA+GGG + chr3_1:78167003-78167022 None:intergenic 25.0%
! AAGTAAAAGCAAATTCAGTA+GGG + chr3_1:78167003-78167022 None:intergenic 25.0%
! AAGTAAAAGCAAATTCAGTA+GGG + chr3_1:78167003-78167022 None:intergenic 25.0%
! AAGTAAAAGCAAATTCAGTA+GGG + chr3_1:78167003-78167022 None:intergenic 25.0%
! CAAGTAAAAGAAAATTCAGT+AGG + chr3_1:78167832-78167851 None:intergenic 25.0%
!! CTACTGAATTTTCTTTTACT+TGG - chr3_1:78167830-78167849 Msa0377560:CDS 25.0%
!! TTTTTCCAGAGTTCAAATTA+CGG - chr3_1:78168111-78168130 Msa0377560:intron 25.0%
!!! TCTATTTCTTTTCATTTTCC+AGG - chr3_1:78168168-78168187 Msa0377560:intron 25.0%
! TGAAAAGCTTATAAAACAGA+TGG - chr3_1:78168318-78168337 Msa0377560:intron 25.0%
!! TTTATTTGTACTTTTCCAGA+TGG - chr3_1:78168462-78168481 Msa0377560:intron 25.0%
! GATATAGATAAGAGAGTAAA+AGG - chr3_1:78168682-78168701 Msa0377560:CDS 25.0%
! TTATGTCATGAAAGCAATTA+TGG + chr3_1:78168819-78168838 None:intergenic 25.0%
! TTATACCATAATTGCTTTCA+TGG + chr3_1:78168875-78168894 None:intergenic 25.0%
! ATGACATGATATAGAACAAA+AGG + chr3_1:78168943-78168962 None:intergenic 25.0%
! ACTAAACATGGTAAACAAAT+CGG + chr3_1:78168974-78168993 None:intergenic 25.0%
! ATATCTCATCAAACTAAACA+TGG + chr3_1:78168986-78169005 None:intergenic 25.0%
! TATACTAATGAATTCTGTCA+TGG + chr3_1:78169157-78169176 None:intergenic 25.0%
! TGATGTTGATATAAATAGGA+AGG - chr3_1:78169332-78169351 Msa0377560:five_prime_UTR 25.0%
! GATGTTGATATAAATAGGAA+GGG - chr3_1:78169333-78169352 Msa0377560:five_prime_UTR 25.0%
! ATGTTGATATAAATAGGAAG+GGG - chr3_1:78169334-78169353 Msa0377560:five_prime_UTR 25.0%
! AAATTATGCATTTCTAATGG+AGG - chr3_1:78169491-78169510 Msa0377560:five_prime_UTR 25.0%
!! GGGATATTTTTACGGATTTA+AGG + chr3_1:78164847-78164866 None:intergenic 30.0%
TTTCTTTCTTCATCAGTCTA+AGG - chr3_1:78164917-78164936 Msa0377560:three_prime_UTR 30.0%
TTCTTTCTTCATCAGTCTAA+GGG - chr3_1:78164918-78164937 Msa0377560:three_prime_UTR 30.0%
! CAATGTTGTAATTTTGTTCC+TGG - chr3_1:78165061-78165080 Msa0377560:CDS 30.0%
!! GATTTTGTTGTAGCTAATGA+TGG - chr3_1:78165280-78165299 Msa0377560:intron 30.0%
TAATTGAGGAGAATTTGAGT+CGG - chr3_1:78165323-78165342 Msa0377560:intron 30.0%
!!! TTCATTGATGTTGACTCTTT+TGG - chr3_1:78165439-78165458 Msa0377560:intron 30.0%
AAACAGTCTCACAAAACATA+TGG + chr3_1:78165699-78165718 None:intergenic 30.0%
! TATGTTTTGTGAGACTGTTT+TGG - chr3_1:78165699-78165718 Msa0377560:CDS 30.0%
TAAGTTGTTTATCCAAACTG+GGG - chr3_1:78165923-78165942 Msa0377560:CDS 30.0%
ATATGACTTCAATTGTGTTG+TGG - chr3_1:78165959-78165978 Msa0377560:CDS 30.0%
TCTGATTATGAGAATTGTGA+TGG - chr3_1:78166094-78166113 Msa0377560:intron 30.0%
!!! TGATGGAGTATTTTAATTGC+TGG - chr3_1:78166111-78166130 Msa0377560:intron 30.0%
!!! ACCACAAGGGTTTTAAAATA+CGG + chr3_1:78166211-78166230 None:intergenic 30.0%
TCTTGTGTTGTATACTGTAA+TGG - chr3_1:78166304-78166323 Msa0377560:intron 30.0%
!! TTTAGTTCTTTAGCTGCTTA+TGG - chr3_1:78166372-78166391 Msa0377560:intron 30.0%
TCTCGTTTGAATATGTCATA+GGG + chr3_1:78166410-78166429 None:intergenic 30.0%
ATCTCGTTTGAATATGTCAT+AGG + chr3_1:78166411-78166430 None:intergenic 30.0%
ATGACATATTCAAACGAGAT+TGG - chr3_1:78166411-78166430 Msa0377560:intron 30.0%
TAAGCATAGTACGAAAACAA+GGG + chr3_1:78166498-78166517 None:intergenic 30.0%
ATAAGCATAGTACGAAAACA+AGG + chr3_1:78166499-78166518 None:intergenic 30.0%
! TTTTCGTACTATGCTTATCA+TGG - chr3_1:78166501-78166520 Msa0377560:intron 30.0%
! AAATTCCCATGAGTTTTCTT+GGG - chr3_1:78166712-78166731 Msa0377560:intron 30.0%
TTGTAAGTTGTAACTAGTGT+TGG - chr3_1:78166844-78166863 Msa0377560:intron 30.0%
CAATTAACATACTTGGAAGT+TGG + chr3_1:78166975-78166994 None:intergenic 30.0%
GGAAAAGCAATTAACATACT+TGG + chr3_1:78166982-78167001 None:intergenic 30.0%
CAAGTAAAAGCAAATTCAGT+AGG + chr3_1:78167004-78167023 None:intergenic 30.0%
!! CTACTGAATTTGCTTTTACT+TGG - chr3_1:78167002-78167021 Msa0377560:intron 30.0%
GGAAAAACAATTAACATGCT+TGG + chr3_1:78167089-78167108 None:intergenic 30.0%
AAGTAAAAGCAAATTCGGTA+GGG + chr3_1:78167110-78167129 None:intergenic 30.0%
CAAGTAAAAGCAAATTCAGT+AGG + chr3_1:78167004-78167023 None:intergenic 30.0%
!! CTACTGAATTTGCTTTTACT+TGG - chr3_1:78167002-78167021 Msa0377560:intron 30.0%
CAAGTAAAAGCAAATTCAGT+AGG + chr3_1:78167004-78167023 None:intergenic 30.0%
!! CTACTGAATTTGCTTTTACT+TGG - chr3_1:78167002-78167021 Msa0377560:intron 30.0%
GGAAAAACAATTAACATGCT+TGG + chr3_1:78167089-78167108 None:intergenic 30.0%
CAAGTAAAAGCAAATTCAGT+AGG + chr3_1:78167004-78167023 None:intergenic 30.0%
!! CTACTGAATTTGCTTTTACT+TGG - chr3_1:78167002-78167021 Msa0377560:intron 30.0%
CAAGTAAAAGCAAATTCAGT+AGG + chr3_1:78167004-78167023 None:intergenic 30.0%
!! CTACTGAATTTGCTTTTACT+TGG - chr3_1:78167002-78167021 Msa0377560:intron 30.0%
CAAGTAAAAGCAAATTCAGT+AGG + chr3_1:78167004-78167023 None:intergenic 30.0%
!! CTACTGAATTTGCTTTTACT+TGG - chr3_1:78167002-78167021 Msa0377560:intron 30.0%
GGAAAAACAATTAACATGCT+TGG + chr3_1:78167089-78167108 None:intergenic 30.0%
CAAGTAAAAGCAAATTCAGT+AGG + chr3_1:78167004-78167023 None:intergenic 30.0%
!! CTACTGAATTTGCTTTTACT+TGG - chr3_1:78167002-78167021 Msa0377560:intron 30.0%
GGAAAAACAATTAACATGCT+TGG + chr3_1:78167089-78167108 None:intergenic 30.0%
AAGTAAAAGCAGATTCAGTA+GGG + chr3_1:78167934-78167953 None:intergenic 30.0%
TATTTCCGTAATTTGAACTC+TGG + chr3_1:78168119-78168138 None:intergenic 30.0%
AAAGCTTATAAAACAGATGG+TGG - chr3_1:78168321-78168340 Msa0377560:intron 30.0%
GTAAATACTGTTAGCTACTT+TGG - chr3_1:78168416-78168435 Msa0377560:intron 30.0%
TTGGTGAGAATATTGAGTTA+TGG - chr3_1:78168435-78168454 Msa0377560:intron 30.0%
!!! ATTTTTTTGAGCAGCAAAGA+AGG + chr3_1:78168843-78168862 None:intergenic 30.0%
TCTGCAATAAACAAAGTACA+AGG + chr3_1:78169077-78169096 None:intergenic 30.0%
! TGTACTTTGTTTATTGCAGA+AGG - chr3_1:78169077-78169096 Msa0377560:CDS 30.0%
! GTACTTTGTTTATTGCAGAA+GGG - chr3_1:78169078-78169097 Msa0377560:CDS 30.0%
TATAGCTAAAGAACTATTGC+CGG - chr3_1:78169173-78169192 Msa0377560:CDS 30.0%
! TTAATGTTCACATGAGTTGA+AGG - chr3_1:78169244-78169263 Msa0377560:five_prime_UTR 30.0%
! TAGTAATAGTGAAGCATTTG+AGG - chr3_1:78169308-78169327 Msa0377560:five_prime_UTR 30.0%
AGGCTGATGTTGATATAAAT+AGG - chr3_1:78169328-78169347 Msa0377560:five_prime_UTR 30.0%
TAGAAACCATGTTGCAATGT+GGG + chr3_1:78164646-78164665 None:intergenic 35.0%
AACTCACAAAACACGTGTAA+CGG - chr3_1:78164878-78164897 Msa0377560:three_prime_UTR 35.0%
TCTTTCTTCATCAGTCTAAG+GGG - chr3_1:78164919-78164938 Msa0377560:three_prime_UTR 35.0%
CAAGACAAAGACAACAACAT+CGG + chr3_1:78164995-78165014 None:intergenic 35.0%
! AATGATGGAAATGAGAGCTA+TGG - chr3_1:78165295-78165314 Msa0377560:intron 35.0%
AATTGAGGAGAATTTGAGTC+GGG - chr3_1:78165324-78165343 Msa0377560:intron 35.0%
!! GAAGTGATTCTTCGTTTTTG+AGG - chr3_1:78165461-78165480 Msa0377560:intron 35.0%
! CTTTATGTCACTTCAACTGA+TGG - chr3_1:78165517-78165536 Msa0377560:intron 35.0%
!!! GAGTATTTTAATTGCTGGCA+TGG - chr3_1:78166116-78166135 Msa0377560:intron 35.0%
!!! ACCGTATTTTAAAACCCTTG+TGG - chr3_1:78166207-78166226 Msa0377560:intron 35.0%
!! TGTAATGGATTTAGGACCTT+TGG - chr3_1:78166319-78166338 Msa0377560:intron 35.0%
!! ATTGGTTTGCGAATGCTTAT+AGG - chr3_1:78166429-78166448 Msa0377560:intron 35.0%
ACGAAAACAAGGGAGTTATA+TGG + chr3_1:78166488-78166507 None:intergenic 35.0%
AATGTCTACAGCAATCACAA+TGG + chr3_1:78166661-78166680 None:intergenic 35.0%
TGTGATTGCTGTAGACATTA+TGG - chr3_1:78166662-78166681 Msa0377560:intron 35.0%
! GAAATTCCCATGAGTTTTCT+TGG - chr3_1:78166711-78166730 Msa0377560:intron 35.0%
AACACTAAAAAACCTCGATG+AGG + chr3_1:78166804-78166823 None:intergenic 35.0%
CATGCAGCAACAGTTTAAAT+AGG + chr3_1:78166938-78166957 None:intergenic 35.0%
CAATTAACATGCTTGGAAGT+TGG + chr3_1:78167082-78167101 None:intergenic 35.0%
CAAGTAAAAGCAAATTCGGT+AGG + chr3_1:78167111-78167130 None:intergenic 35.0%
!! CTACCGAATTTGCTTTTACT+TGG - chr3_1:78167109-78167128 Msa0377560:intron 35.0%
GGAAAAGCAATTAACATGCT+TGG + chr3_1:78167192-78167211 None:intergenic 35.0%
GGAAAAGCAATTAACATGCT+TGG + chr3_1:78167192-78167211 None:intergenic 35.0%
CAATTAACATGCTTGGAAGT+TGG + chr3_1:78167082-78167101 None:intergenic 35.0%
GGAAAAGCAATTAACATGCT+TGG + chr3_1:78167192-78167211 None:intergenic 35.0%
GGAAAAGCAATTAACATGCT+TGG + chr3_1:78167192-78167211 None:intergenic 35.0%
CAATTAACATGCTTGGAAGT+TGG + chr3_1:78167082-78167101 None:intergenic 35.0%
GGAAAAGCAATTAACATGCT+TGG + chr3_1:78167192-78167211 None:intergenic 35.0%
CAAGTAAAAGCAGATTCAGT+AGG + chr3_1:78167935-78167954 None:intergenic 35.0%
!! CTACTGAATCTGCTTTTACT+TGG - chr3_1:78167933-78167952 Msa0377560:intron 35.0%
! AAGTTAACGAATCACCCTTT+TGG - chr3_1:78167963-78167982 Msa0377560:intron 35.0%
TCATGATGCTGCATATCTTA+CGG - chr3_1:78168237-78168256 Msa0377560:intron 35.0%
TCTTACGGATATGTTAGATC+TGG - chr3_1:78168252-78168271 Msa0377560:intron 35.0%
TCCAACTTGATATACCCAAA+TGG + chr3_1:78168367-78168386 None:intergenic 35.0%
!!! GTGGAGTATTGATTTTTGCA+CGG + chr3_1:78168492-78168511 None:intergenic 35.0%
AAATCAATACTCCACCTCTT+AGG - chr3_1:78168497-78168516 Msa0377560:intron 35.0%
AATCAATACTCCACCTCTTA+GGG - chr3_1:78168498-78168517 Msa0377560:intron 35.0%
CTCATATGCATCATGAAAAC+TGG - chr3_1:78168711-78168730 Msa0377560:CDS 35.0%
CGGAGAAACTACTAAAGAAT+AGG - chr3_1:78168739-78168758 Msa0377560:CDS 35.0%
CTATGCCATGAAAGCAATTA+TGG - chr3_1:78168867-78168886 Msa0377560:CDS 35.0%
CAAAGTACAAGGTAAGTGAA+TGG + chr3_1:78169066-78169085 None:intergenic 35.0%
AACCATTAAGAGACAGATAC+CGG + chr3_1:78169195-78169214 None:intergenic 35.0%
GTATCTGTCTCTTAATGGTT+TGG - chr3_1:78169195-78169214 Msa0377560:CDS 35.0%
GAACATTAACAAATGCTCAG+AGG + chr3_1:78169233-78169252 None:intergenic 35.0%
! AGGGGACATACTTCATATTT+TGG - chr3_1:78169352-78169371 Msa0377560:five_prime_UTR 35.0%
ATGAAGTTGTTGATCATGCA+AGG - chr3_1:78169378-78169397 Msa0377560:five_prime_UTR 35.0%
ATTTCTAATGGAGGCTTCTT+TGG - chr3_1:78169500-78169519 Msa0377560:five_prime_UTR 35.0%
AGAAACCATGTTGCAATGTG+GGG + chr3_1:78164645-78164664 None:intergenic 40.0%
CTAGAAACCATGTTGCAATG+TGG + chr3_1:78164647-78164666 None:intergenic 40.0%
CGATGTTGTTGTCTTTGTCT+TGG - chr3_1:78164993-78165012 Msa0377560:three_prime_UTR 40.0%
TCCTGGAAACGTTTCTCAAA+CGG - chr3_1:78165078-78165097 Msa0377560:CDS 40.0%
ATGGAAATGAGAGCTATGGA+AGG - chr3_1:78165299-78165318 Msa0377560:intron 40.0%
GAGCTATGGAAGGATAATTG+AGG - chr3_1:78165309-78165328 Msa0377560:intron 40.0%
TCAACTGATGGTTTCTCTTC+TGG - chr3_1:78165529-78165548 Msa0377560:intron 40.0%
GAACAGCATTCTTACTGATG+AGG + chr3_1:78165565-78165584 None:intergenic 40.0%
AGTCAATCTAAACATGCCCT+TGG + chr3_1:78165657-78165676 None:intergenic 40.0%
CATAACATTTAGCCCCAGTT+TGG + chr3_1:78165938-78165957 None:intergenic 40.0%
CAAACTGGGGCTAAATGTTA+TGG - chr3_1:78165936-78165955 Msa0377560:CDS 40.0%
TGAAACAAATGCTGCAGATG+TGG - chr3_1:78166149-78166168 Msa0377560:intron 40.0%
ATAGTCACAGTACACCACAA+GGG + chr3_1:78166224-78166243 None:intergenic 40.0%
TATAGTCACAGTACACCACA+AGG + chr3_1:78166225-78166244 None:intergenic 40.0%
! ATGGATTTAGGACCTTTGGT+TGG - chr3_1:78166323-78166342 Msa0377560:intron 40.0%
AGTTACAAACCACCAACCAA+AGG + chr3_1:78166338-78166357 None:intergenic 40.0%
! CTTATCATGGACCTGTTTTC+CGG - chr3_1:78166514-78166533 Msa0377560:intron 40.0%
! TTATCATGGACCTGTTTTCC+GGG - chr3_1:78166515-78166534 Msa0377560:intron 40.0%
CAAGGCATGTCACAAACATA+AGG + chr3_1:78166590-78166609 None:intergenic 40.0%
TTGGTCCCAAGAAAACTCAT+GGG + chr3_1:78166720-78166739 None:intergenic 40.0%
! TGTTTGAGATTACCTCATCG+AGG - chr3_1:78166789-78166808 Msa0377560:intron 40.0%
AACTGTTGCTGCATGAAACA+TGG - chr3_1:78166943-78166962 Msa0377560:intron 40.0%
ATCATGTTTCATGCAGCAAC+AGG + chr3_1:78167157-78167176 None:intergenic 40.0%
! TTAAGGTATCAGGACCTCTT+TGG - chr3_1:78168203-78168222 Msa0377560:intron 40.0%
AGATATGCAGCATCATGAAG+AGG + chr3_1:78168235-78168254 None:intergenic 40.0%
ATATACCCAAATGGCAACCT+GGG + chr3_1:78168358-78168377 None:intergenic 40.0%
GCCATTTGGGTATATCAAGT+TGG - chr3_1:78168363-78168382 Msa0377560:intron 40.0%
!! TGGGTATATCAAGTTGGATG+AGG - chr3_1:78168369-78168388 Msa0377560:intron 40.0%
CATCATGAAAACTGGCAGTT+CGG - chr3_1:78168719-78168738 Msa0377560:CDS 40.0%
GTACAAGGTAAGTGAATGGT+TGG + chr3_1:78169062-78169081 None:intergenic 40.0%
! CTTAATGGTTTGGCCTCTAA+AGG - chr3_1:78169205-78169224 Msa0377560:CDS 40.0%
! TCATAGAGTTGCTTTGTGAC+TGG + chr3_1:78169545-78169564 None:intergenic 40.0%
!! ATTCTCCGCAGAAGCATTCT+CGG - chr3_1:78165035-78165054 Msa0377560:CDS 45.0%
TCCGTTTGAGAAACGTTTCC+AGG + chr3_1:78165082-78165101 None:intergenic 45.0%
AACGTTTCTCAAACGGAACG+TGG - chr3_1:78165085-78165104 Msa0377560:CDS 45.0%
TTCTCAAACGGAACGTGGTT+TGG - chr3_1:78165090-78165109 Msa0377560:CDS 45.0%
! CGTGGTTTGGAATTCAACAC+CGG - chr3_1:78165103-78165122 Msa0377560:CDS 45.0%
TCCTTGCAGAAGAAGGCTAA+TGG - chr3_1:78165184-78165203 Msa0377560:intron 45.0%
!! TCCATTAGCCTTCTTCTGCA+AGG + chr3_1:78165188-78165207 None:intergenic 45.0%
CGTGTTCTTGATGCACTTTG+TGG - chr3_1:78165214-78165233 Msa0377560:intron 45.0%
CTTGATGCACTTTGTGGTTG+CGG - chr3_1:78165220-78165239 Msa0377560:intron 45.0%
TTGATGCACTTTGTGGTTGC+GGG - chr3_1:78165221-78165240 Msa0377560:intron 45.0%
GGAGAATTTGAGTCGGGTTT+CGG - chr3_1:78165330-78165349 Msa0377560:intron 45.0%
GGCGAAAGAAGAGGAAAGAT+GGG - chr3_1:78165351-78165370 Msa0377560:intron 45.0%
GAAAGAAGAGGAAAGATGGG+TGG - chr3_1:78165354-78165373 Msa0377560:intron 45.0%
ACTGATGGTTTCTCTTCTGG+TGG - chr3_1:78165532-78165551 Msa0377560:intron 45.0%
TGCTCACAGTCATCATACCA+AGG - chr3_1:78165637-78165656 Msa0377560:intron 45.0%
GCTCACAGTCATCATACCAA+GGG - chr3_1:78165638-78165657 Msa0377560:intron 45.0%
GAAACCCTGATGTTGTTGTC+TGG - chr3_1:78165996-78166015 Msa0377560:CDS 45.0%
GCAACCAGACAACAACATCA+GGG + chr3_1:78166003-78166022 None:intergenic 45.0%
TGCAACCAGACAACAACATC+AGG + chr3_1:78166004-78166023 None:intergenic 45.0%
! GATTTAGGACCTTTGGTTGG+TGG - chr3_1:78166326-78166345 Msa0377560:intron 45.0%
GGTTTGCGAATGCTTATAGG+CGG - chr3_1:78166432-78166451 Msa0377560:intron 45.0%
GTTTGCGAATGCTTATAGGC+GGG - chr3_1:78166433-78166452 Msa0377560:intron 45.0%
TTTGCGAATGCTTATAGGCG+GGG - chr3_1:78166434-78166453 Msa0377560:intron 45.0%
GATTCAATCTGAGCAAGACC+CGG + chr3_1:78166536-78166555 None:intergenic 45.0%
GTCTTGCTCAGATTGAATCG+CGG - chr3_1:78166537-78166556 Msa0377560:intron 45.0%
TCTTGCTCAGATTGAATCGC+GGG - chr3_1:78166538-78166557 Msa0377560:intron 45.0%
AATTTCCACACTGGTCGCAT+TGG + chr3_1:78166697-78166716 None:intergenic 45.0%
ACTCATGGGAATTTCCACAC+TGG + chr3_1:78166706-78166725 None:intergenic 45.0%
GTTGGTCCCAAGAAAACTCA+TGG + chr3_1:78166721-78166740 None:intergenic 45.0%
! GAGTTTTCTTGGGACCAACT+TGG - chr3_1:78166722-78166741 Msa0377560:intron 45.0%
AGCAACTCATCTGACCAAGT+TGG + chr3_1:78166739-78166758 None:intergenic 45.0%
! AGTGTGTCAAAGGTATGGTG+TGG - chr3_1:78166764-78166783 Msa0377560:intron 45.0%
! TCAGACTCGCTTAAGGTATC+AGG - chr3_1:78168193-78168212 Msa0377560:intron 45.0%
TATCAGGACCTCTTTGGACA+GGG - chr3_1:78168209-78168228 Msa0377560:intron 45.0%
TATACCCAAATGGCAACCTG+GGG + chr3_1:78168357-78168376 None:intergenic 45.0%
GATATACCCAAATGGCAACC+TGG + chr3_1:78168359-78168378 None:intergenic 45.0%
!!! CTTTTAGAGTACCTCGTGCA+GGG + chr3_1:78168536-78168555 None:intergenic 45.0%
!!! ACTTTTAGAGTACCTCGTGC+AGG + chr3_1:78168537-78168556 None:intergenic 45.0%
TGCCGGTATCTGTCTCTTAA+TGG - chr3_1:78169190-78169209 Msa0377560:CDS 45.0%
ATGCTCAGAGGAACCTTTAG+AGG + chr3_1:78169221-78169240 None:intergenic 45.0%
CAGCTGAGTGGAATGTCAAA+AGG + chr3_1:78169418-78169437 None:intergenic 45.0%
! CTTTTGACATTCCACTCAGC+TGG - chr3_1:78169416-78169435 Msa0377560:five_prime_UTR 45.0%
ATAATGCATGACCAGCTGAG+TGG + chr3_1:78169430-78169449 None:intergenic 45.0%
GAATGCTTCTGCGGAGAATG+AGG + chr3_1:78165034-78165053 None:intergenic 50.0%
TGACACCGAGAATGCTTCTG+CGG + chr3_1:78165043-78165062 None:intergenic 50.0%
! GGTTTGGAATTCAACACCGG+CGG - chr3_1:78165106-78165125 Msa0377560:CDS 50.0%
TTGACGGTAAAATGCACCGC+CGG + chr3_1:78165125-78165144 None:intergenic 50.0%
TGCAGCTTCCTTGCAGAAGA+AGG - chr3_1:78165177-78165196 Msa0377560:intron 50.0%
CACTTTGTGGTTGCGGGATA+CGG - chr3_1:78165227-78165246 Msa0377560:intron 50.0%
CGGCGAAAGAAGAGGAAAGA+TGG - chr3_1:78165350-78165369 Msa0377560:intron 50.0%
! GTTTCTCTTCTGGTGGACAC+AGG - chr3_1:78165539-78165558 Msa0377560:intron 50.0%
GCGGGAAGCTTCATGATAGT+AGG - chr3_1:78166556-78166575 Msa0377560:intron 50.0%
TTGCTCCTGCAGTGTGTCAA+AGG - chr3_1:78166754-78166773 Msa0377560:intron 50.0%
CCATACCTTTGACACACTGC+AGG + chr3_1:78166762-78166781 None:intergenic 50.0%
CCTGCAGTGTGTCAAAGGTA+TGG - chr3_1:78166759-78166778 Msa0377560:intron 50.0%
! CCTTAAGCGAGTCTGAAACC+TGG + chr3_1:78168189-78168208 None:intergenic 50.0%
CCAGGTTTCAGACTCGCTTA+AGG - chr3_1:78168186-78168205 Msa0377560:intron 50.0%
GTATCAGGACCTCTTTGGAC+AGG - chr3_1:78168208-78168227 Msa0377560:intron 50.0%
TGTTAGATCTGGCCAAGCAG+TGG - chr3_1:78168263-78168282 Msa0377560:intron 50.0%
GTTAGATCTGGCCAAGCAGT+GGG - chr3_1:78168264-78168283 Msa0377560:intron 50.0%
TTAGATCTGGCCAAGCAGTG+GGG - chr3_1:78168265-78168284 Msa0377560:intron 50.0%
!! TGGGGATGGATTGGTTGTGA+TGG - chr3_1:78168283-78168302 Msa0377560:intron 50.0%
! TTTTTGCACGGCTTGCCATC+TGG + chr3_1:78168480-78168499 None:intergenic 50.0%
!! TACCGTCAAGAAAGCGCCAC+CGG - chr3_1:78165136-78165155 Msa0377560:intron 55.0%
AAGAACTCCGAGGTCACGTC+CGG + chr3_1:78165158-78165177 None:intergenic 55.0%
AGGAAGCTGCAAGAACTCCG+AGG + chr3_1:78165168-78165187 None:intergenic 55.0%
TTGTGGTTGCGGGATACGGT+CGG - chr3_1:78165231-78165250 Msa0377560:intron 55.0%
TCGGGTTTCGGCGAAAGAAG+AGG - chr3_1:78165342-78165361 Msa0377560:intron 55.0%
TGCTTATAGGCGGGGTTGTC+AGG - chr3_1:78166442-78166461 Msa0377560:intron 55.0%
GCTTATAGGCGGGGTTGTCA+GGG - chr3_1:78166443-78166462 Msa0377560:intron 55.0%
TGTCAGGGAGGCTGCATTGT+TGG - chr3_1:78166458-78166477 Msa0377560:intron 55.0%
GTCAGGGAGGCTGCATTGTT+GGG - chr3_1:78166459-78166478 Msa0377560:intron 55.0%
TCAGGGAGGCTGCATTGTTG+GGG - chr3_1:78166460-78166479 Msa0377560:intron 55.0%
CTGAGCAAGACCCGGAAAAC+AGG + chr3_1:78166528-78166547 None:intergenic 55.0%
ATTGGCCAATGCGACCAGTG+TGG - chr3_1:78166689-78166708 Msa0377560:intron 55.0%
TGAAGAGGCCCTGTCCAAAG+AGG + chr3_1:78168220-78168239 None:intergenic 55.0%
ACCAATCCATCCCCACTGCT+TGG + chr3_1:78168278-78168297 None:intergenic 55.0%
! TGGTGGATGAAAGTGACCCC+AGG - chr3_1:78168338-78168357 Msa0377560:intron 55.0%
AGTGACCCCAGGTTGCCATT+TGG - chr3_1:78168349-78168368 Msa0377560:intron 55.0%
! GTGACCCCAGGTTGCCATTT+GGG - chr3_1:78168350-78168369 Msa0377560:intron 55.0%
CTCATCAAGGCCCTAAGAGG+TGG + chr3_1:78168511-78168530 None:intergenic 55.0%
AGAAGGGTTATGCTGCGAGC+AGG - chr3_1:78169094-78169113 Msa0377560:CDS 55.0%
GTCCGGTGGCGCTTTCTTGA+CGG + chr3_1:78165141-78165160 None:intergenic 60.0%
ACGGTCGGCGCGGTATTTGA+AGG - chr3_1:78165246-78165265 Msa0377560:intron 60.0%
TATAGGCGGGGTTGTCAGGG+AGG - chr3_1:78166446-78166465 Msa0377560:intron 60.0%
ATCTGGCCAAGCAGTGGGGA+TGG - chr3_1:78168269-78168288 Msa0377560:intron 60.0%
GCCAAGCAGTGGGGATGGAT+TGG - chr3_1:78168274-78168293 Msa0377560:intron 60.0%
GCGCTCATCAAGGCCCTAAG+AGG + chr3_1:78168514-78168533 None:intergenic 60.0%
AACTCCGAGGTCACGTCCGG+TGG + chr3_1:78165155-78165174 None:intergenic 65.0%
! CTCGTGCAGGGCGCTCATCA+AGG + chr3_1:78168524-78168543 None:intergenic 65.0%
CTTGATGAGCGCCCTGCACG+AGG - chr3_1:78168522-78168541 Msa0377560:intron 65.0%
AGCGCCACCGGACGTGACCT+CGG - chr3_1:78165148-78165167 Msa0377560:intron 70.0%
GTTGCGGGATACGGTCGGCG+CGG - chr3_1:78165236-78165255 Msa0377560:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 78164641 78169587 78164641 ID=Msa0377560;Name=Msa0377560
chr3_1 mRNA 78164641 78169587 78164641 ID=Msa0377560-mRNA-1;Parent=Msa0377560;Name=Msa0377560-mRNA-1;_AED=0.04;_eAED=0.04;_QI=354|1|1|1|1|1|6|378|417
chr3_1 exon 78164641 78165132 78164641 ID=Msa0377560-mRNA-1:exon:18746;Parent=Msa0377560-mRNA-1
chr3_1 exon 78165685 78165747 78165685 ID=Msa0377560-mRNA-1:exon:18745;Parent=Msa0377560-mRNA-1
chr3_1 exon 78165838 78166038 78165838 ID=Msa0377560-mRNA-1:exon:18744;Parent=Msa0377560-mRNA-1
chr3_1 exon 78167453 78167552 78167453 ID=Msa0377560-mRNA-1:exon:18743;Parent=Msa0377560-mRNA-1
chr3_1 exon 78167651 78167851 78167651 ID=Msa0377560-mRNA-1:exon:18742;Parent=Msa0377560-mRNA-1
chr3_1 exon 78168659 78169587 78168659 ID=Msa0377560-mRNA-1:exon:18741;Parent=Msa0377560-mRNA-1
chr3_1 five_prime_UTR 78169234 78169587 78169234 ID=Msa0377560-mRNA-1:five_prime_utr;Parent=Msa0377560-mRNA-1
chr3_1 CDS 78168659 78169233 78168659 ID=Msa0377560-mRNA-1:cds;Parent=Msa0377560-mRNA-1
chr3_1 CDS 78167651 78167851 78167651 ID=Msa0377560-mRNA-1:cds;Parent=Msa0377560-mRNA-1
chr3_1 CDS 78167453 78167552 78167453 ID=Msa0377560-mRNA-1:cds;Parent=Msa0377560-mRNA-1
chr3_1 CDS 78165838 78166038 78165838 ID=Msa0377560-mRNA-1:cds;Parent=Msa0377560-mRNA-1
chr3_1 CDS 78165685 78165747 78165685 ID=Msa0377560-mRNA-1:cds;Parent=Msa0377560-mRNA-1
chr3_1 CDS 78165019 78165132 78165019 ID=Msa0377560-mRNA-1:cds;Parent=Msa0377560-mRNA-1
chr3_1 three_prime_UTR 78164641 78165018 78164641 ID=Msa0377560-mRNA-1:three_prime_utr;Parent=Msa0377560-mRNA-1
Gene Sequence

>Msa0377560

ATGTTGTTGTCTTTGTCTTGGTCTTTCACTTTTTCTCCTCATTCTCCGCAGAAGCATTCTCGGTGTCAATGTTGTAATTTTGTTCCTGGAAACGTTTCTCAAACGGAACGTGGTTTGGAATTCAACACCGGCGGTGCATTTTACCGTCAAGAAAGCGCCACCGGACGTGACCTCGGAGTTCTTGCAGCTTCCTTGCAGAAGAAGGCTAATGGAAGCTTGCGTGTTCTTGATGCACTTTGTGGTTGCGGGATACGGTCGGCGCGGTATTTGAAGGAAGCTGAAGCTGATTTTGTTGTAGCTAATGATGGAAATGAGAGCTATGGAAGGATAATTGAGGAGAATTTGAGTCGGGTTTCGGCGAAAGAAGAGGAAAGATGGGTGGTTACTCATTTAGAAGCTAATAGAGTTATGACTGATTATTACATGCAGAAGAGTTTGTTTGATTTCATTGATGTTGACTCTTTTGGAAGTGATTCTTCGTTTTTGAGGTCTGCTATCATTACTTTGAAATTTGGTGGTCTGCTTTATGTCACTTCAACTGATGGTTTCTCTTCTGGTGGACACAGGCCTCATCATTCTTTAGCTGCTTATGGAGCTTATGTGCGCCCTATGACATATTCAAACGAGATTGGTTTGCGAATGCTTATAGGCGGGGTTGTCAGGGAGGCTGCATTGTTGGGGTACCATATAACTCCCTTGTTTTCGTACTATGCTTATCATGGACCTGTTTTCCGGGTCTTGCTCAGATTGAATCGCGGGAAGCTTCATGATAGTAGACATTATGGTTTTATTGGCCAATGCGACCAGTGTGGAAATTCCCATGAGTTTTCTTGGGACCAACTTGGTCAGATGAGTTGCTCCTGCAGTGTGTCAAAGGTTTCAGACTCGCTTAAGGTATCAGGACCTCTTTGGACAGGGCCTCTTCATGATGCTGCATATCTTACGGATATGTTAGATCTGGCCAAGCAGTGGGGATGGATTGGTTGTGATGGTAAAGACAGTCTTGAAAAGCTTATAAAACAGATGGTGGATGAAAGTGACCCCAGGTTGCCATTTGGGTATATCAAGTTGGATGAGATGGCAAGCCGTGCAAAAATCAATACTCCACCTCTTAGGGCCTTGATGAGCGCCCTGCACGAGAAGGGTTATGCTGCGAGCAGGTCTCACATAACCGCAAATGCAATTAAAACAAATTGCTCCATGACAGAATTCATTAGTATAGCTAAAGAACTATTGCCGGTATCTGTCTCTTAA

Protein sequence

>Msa0377560

MLLSLSWSFTFSPHSPQKHSRCQCCNFVPGNVSQTERGLEFNTGGAFYRQESATGRDLGVLAASLQKKANGSLRVLDALCGCGIRSARYLKEAEADFVVANDGNESYGRIIEENLSRVSAKEEERWVVTHLEANRVMTDYYMQKSLFDFIDVDSFGSDSSFLRSAIITLKFGGLLYVTSTDGFSSGGHRPHHSLAAYGAYVRPMTYSNEIGLRMLIGGVVREAALLGYHITPLFSYYAYHGPVFRVLLRLNRGKLHDSRHYGFIGQCDQCGNSHEFSWDQLGQMSCSCSVSKVSDSLKVSGPLWTGPLHDAAYLTDMLDLAKQWGWIGCDGKDSLEKLIKQMVDESDPRLPFGYIKLDEMASRAKINTPPLRALMSALHEKGYAASRSHITANAIKTNCSMTEFISIAKELLPVSVS*