AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0377630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377630 MtrunA17_Chr3g0128891 97.122 417 12 0 1 417 1 417 0.0 845
Msa0377630 MtrunA17_Chr6g0455421 26.346 353 220 12 74 402 210 546 1.14e-21 97.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377630 AT3G56330.1 63.476 397 143 1 18 412 35 431 0.0 540
Msa0377630 AT5G15810.1 24.419 344 236 8 74 401 123 458 3.66e-19 90.1
Msa0377630 AT3G02320.1 24.324 370 248 10 52 401 101 458 4.04e-17 84.0

Find 145 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGTTCTTTAGCTGCTTA+TGG 0.167466 3_1:+78240028 Msa0377630:intron
GCTATCATTACTTTGAAATT+TGG 0.203394 3_1:+78239143 Msa0377630:CDS
AAATCAATACTCCACCTCTT+AGG 0.208380 3_1:+78241608 Msa0377630:CDS
AGGGGACATACTTCATATTT+TGG 0.210714 3_1:+78242463 Msa0377630:three_prime_UTR
TCAACTGATGGTTTCTCTTC+TGG 0.214021 3_1:+78239185 Msa0377630:CDS
TGCCGGTATCTGTCTCTTAA+TGG 0.225155 3_1:+78242301 Msa0377630:CDS
TTCATTGATGTTGACTCTTT+TGG 0.235166 3_1:+78239095 Msa0377630:CDS
TGTCAGGGAGGCTGCATTGT+TGG 0.250036 3_1:+78240114 Msa0377630:CDS
GTCAGGGAGGCTGCATTGTT+GGG 0.255296 3_1:+78240115 Msa0377630:CDS
TGCTTATAGGCGGGGTTGTC+AGG 0.255906 3_1:+78240098 Msa0377630:CDS
TTTCTTTCTTCATCAGTCTA+AGG 0.257474 3_1:+78238573 Msa0377630:five_prime_UTR
ATTTCTAATGGAGGCTTCTT+TGG 0.267322 3_1:+78242611 Msa0377630:three_prime_UTR
ACCTTATATAATCCCATAAA+AGG 0.272404 3_1:+78238379 Msa0377630:five_prime_UTR
ATTGGTTTGCGAATGCTTAT+AGG 0.273451 3_1:+78240085 Msa0377630:CDS
TGTGATTGCTGTAGACATTA+TGG 0.290218 3_1:+78240318 Msa0377630:intron
TTCTCAAACGGAACGTGGTT+TGG 0.290253 3_1:+78238746 Msa0377630:CDS
AGGCTGATGTTGATATAAAT+AGG 0.313209 3_1:+78242439 Msa0377630:three_prime_UTR
GTGACCCCAGGTTGCCATTT+GGG 0.321091 3_1:+78241461 Msa0377630:CDS
TCAGACTCGCTTAAGGTATC+AGG 0.326059 3_1:+78241304 Msa0377630:CDS
GGAGAATTTGAGTCGGGTTT+CGG 0.326905 3_1:+78238986 Msa0377630:CDS
TATTTAATCATTCATTTCTC+TGG 0.345554 3_1:+78242558 Msa0377630:three_prime_UTR
TTGATGCACTTTGTGGTTGC+GGG 0.347797 3_1:+78238877 Msa0377630:CDS
TCCGTTTGAGAAACGTTTCC+AGG 0.355207 3_1:-78238735 None:intergenic
TTAAGGTATCAGGACCTCTT+TGG 0.359066 3_1:+78241314 Msa0377630:CDS
ATCTCGTTTGAATATGTCAT+AGG 0.371894 3_1:-78240064 None:intergenic
CGATGTTGTTGTCTTTGTCT+TGG 0.377343 3_1:+78238649 Msa0377630:exon
GTATCTGTCTCTTAATGGTT+TGG 0.380877 3_1:+78242306 Msa0377630:exon
CTTAATGGTTTGGCCTCTAA+AGG 0.384391 3_1:+78242316 Msa0377630:exon
ATTCTCCGCAGAAGCATTCT+CGG 0.385655 3_1:+78238691 Msa0377630:CDS
GTCCGGTGGCGCTTTCTTGA+CGG 0.386557 3_1:-78238794 None:intergenic
TCTAAATTATGCATTTCTAA+TGG 0.390006 3_1:+78242599 Msa0377630:three_prime_UTR
ATGCTCAGAGGAACCTTTAG+AGG 0.391287 3_1:-78242329 None:intergenic
ATGACATATTCAAACGAGAT+TGG 0.394373 3_1:+78240067 Msa0377630:CDS
TGCAGCTTCCTTGCAGAAGA+AGG 0.398526 3_1:+78238833 Msa0377630:CDS
CTGAGCAAGACCCGGAAAAC+AGG 0.402440 3_1:-78240181 None:intergenic
CGTGTTCTTGATGCACTTTG+TGG 0.405770 3_1:+78238870 Msa0377630:CDS
CACTTTGTGGTTGCGGGATA+CGG 0.407311 3_1:+78238883 Msa0377630:CDS
AATCAATACTCCACCTCTTA+GGG 0.418319 3_1:+78241609 Msa0377630:CDS
CCAGGTTTCAGACTCGCTTA+AGG 0.425418 3_1:+78241297 Msa0377630:intron
TTCTTTCTTCATCAGTCTAA+GGG 0.428406 3_1:+78238574 Msa0377630:five_prime_UTR
TTAATGTTCACATGAGTTGA+AGG 0.430280 3_1:+78242355 Msa0377630:three_prime_UTR
CTTTATGTCACTTCAACTGA+TGG 0.431973 3_1:+78239173 Msa0377630:CDS
TCCTTGCAGAAGAAGGCTAA+TGG 0.432598 3_1:+78238840 Msa0377630:CDS
GATATACCCAAATGGCAACC+TGG 0.432960 3_1:-78241467 None:intergenic
TCCTGGAAACGTTTCTCAAA+CGG 0.434943 3_1:+78238734 Msa0377630:CDS
ACGAAAACAAGGGAGTTATA+TGG 0.435228 3_1:-78240141 None:intergenic
CTTGATGCACTTTGTGGTTG+CGG 0.436079 3_1:+78238876 Msa0377630:CDS
AGTGACCCCAGGTTGCCATT+TGG 0.437494 3_1:+78241460 Msa0377630:CDS
ATCATTACTTTGAAATTTGG+TGG 0.439529 3_1:+78239146 Msa0377630:CDS
GCCAAGCAGTGGGGATGGAT+TGG 0.442704 3_1:+78241385 Msa0377630:CDS
TATAGCTAAAGAACTATTGC+CGG 0.443111 3_1:+78242284 Msa0377630:CDS
AATTGAGGAGAATTTGAGTC+GGG 0.454310 3_1:+78238980 Msa0377630:CDS
TAGTAATAGTGAAGCATTTG+AGG 0.474582 3_1:+78242419 Msa0377630:three_prime_UTR
CTCGTGCAGGGCGCTCATCA+AGG 0.477774 3_1:-78241632 None:intergenic
TCATAGAGTTGCTTTGTGAC+TGG 0.478652 3_1:-78242653 None:intergenic
CGGCGAAAGAAGAGGAAAGA+TGG 0.482786 3_1:+78239006 Msa0377630:CDS
TCATGATGCTGCATATCTTA+CGG 0.488223 3_1:+78241348 Msa0377630:CDS
ACTGATGGTTTCTCTTCTGG+TGG 0.490556 3_1:+78239188 Msa0377630:CDS
TTGTGAGTTAATTAAAATGA+GGG 0.492305 3_1:-78238520 None:intergenic
GTATCAGGACCTCTTTGGAC+AGG 0.504615 3_1:+78241319 Msa0377630:CDS
ATCTGGCCAAGCAGTGGGGA+TGG 0.507155 3_1:+78241380 Msa0377630:CDS
ACGGTCGGCGCGGTATTTGA+AGG 0.509215 3_1:+78238902 Msa0377630:CDS
TTTGTGAGTTAATTAAAATG+AGG 0.510649 3_1:-78238521 None:intergenic
TCTTACGGATATGTTAGATC+TGG 0.511156 3_1:+78241363 Msa0377630:CDS
GCTTATAGGCGGGGTTGTCA+GGG 0.511350 3_1:+78240099 Msa0377630:CDS
CAGCTGAGTGGAATGTCAAA+AGG 0.512417 3_1:-78242526 None:intergenic
TGATGTTGATATAAATAGGA+AGG 0.520359 3_1:+78242443 Msa0377630:three_prime_UTR
TGGGGATGGATTGGTTGTGA+TGG 0.523059 3_1:+78241394 Msa0377630:CDS
AGCGCCACCGGACGTGACCT+CGG 0.524212 3_1:+78238804 Msa0377630:CDS
TCAGGGAGGCTGCATTGTTG+GGG 0.525127 3_1:+78240116 Msa0377630:CDS
GTTTCTCTTCTGGTGGACAC+AGG 0.525712 3_1:+78239195 Msa0377630:CDS
TAGAAACCTTGTTGCAATGT+GGG 0.526171 3_1:-78238300 Msa0377620:five_prime_UTR
ACCAATCCATCCCCACTGCT+TGG 0.526173 3_1:-78241386 None:intergenic
GTTTGCGAATGCTTATAGGC+GGG 0.526475 3_1:+78240089 Msa0377630:CDS
GAATGCTTCTGCGGAGAATG+AGG 0.527706 3_1:-78238687 None:intergenic
AAGAACTCCGAGGTCACGTC+CGG 0.529717 3_1:-78238811 None:intergenic
GCCATTTGGGTATATCAAGT+TGG 0.531607 3_1:+78241474 Msa0377630:CDS
AATGATGGAAATGAGAGCTA+TGG 0.531886 3_1:+78238951 Msa0377630:CDS
AATTTCCACACTGGTCGCAT+TGG 0.532664 3_1:-78240350 None:intergenic
GTTGGTCCCAAGAAAACTCA+TGG 0.536292 3_1:-78240374 None:intergenic
GTTAGATCTGGCCAAGCAGT+GGG 0.541656 3_1:+78241375 Msa0377630:CDS
TCTTGCTCAGATTGAATCGC+GGG 0.544510 3_1:+78240194 Msa0377630:CDS
AGAAGGGTTATGCTGCGAGC+AGG 0.547371 3_1:+78242205 Msa0377630:intron
GCGCTCATCAAGGCCCTAAG+AGG 0.548089 3_1:-78241622 None:intergenic
AACTCACAAAACACGTGTAA+CGG 0.548624 3_1:+78238534 Msa0377630:five_prime_UTR
ATATACCCAAATGGCAACCT+GGG 0.548650 3_1:-78241466 None:intergenic
GCGGGAAGCTTCATGATAGT+AGG 0.550760 3_1:+78240212 Msa0377630:CDS
CTTGATGAGCGCCCTGCACG+AGG 0.550935 3_1:+78241633 Msa0377630:CDS
AAATTATGCATTTCTAATGG+AGG 0.551504 3_1:+78242602 Msa0377630:three_prime_UTR
AACGTTTCTCAAACGGAACG+TGG 0.551995 3_1:+78238741 Msa0377630:CDS
TCCAACTTGATATACCCAAA+TGG 0.552417 3_1:-78241475 None:intergenic
TGGGTATATCAAGTTGGATG+AGG 0.554171 3_1:+78241480 Msa0377630:CDS
TTGTGGTTGCGGGATACGGT+CGG 0.555656 3_1:+78238887 Msa0377630:CDS
TACCGTCAAGAAAGCGCCAC+CGG 0.558477 3_1:+78238792 Msa0377630:CDS
TCCATTAGCCTTCTTCTGCA+AGG 0.561512 3_1:-78238841 None:intergenic
TCGGGTTTCGGCGAAAGAAG+AGG 0.562272 3_1:+78238998 Msa0377630:CDS
TCTCGTTTGAATATGTCATA+GGG 0.566934 3_1:-78240063 None:intergenic
TGAAAAGCTTATAAAACAGA+TGG 0.567081 3_1:+78241429 Msa0377630:CDS
CTCATCAAGGCCCTAAGAGG+TGG 0.569465 3_1:-78241619 None:intergenic
GGTTTGCGAATGCTTATAGG+CGG 0.570509 3_1:+78240088 Msa0377630:CDS
TTGCTCCTGCAGTGTGTCAA+AGG 0.578026 3_1:+78240410 Msa0377630:CDS
AACCATTAAGAGACAGATAC+CGG 0.579125 3_1:-78242303 None:intergenic
GAGCTATGGAAGGATAATTG+AGG 0.582471 3_1:+78238965 Msa0377630:CDS
AACTCCGAGGTCACGTCCGG+TGG 0.582476 3_1:-78238808 None:intergenic
ATGAAGTTGTTGATCATGCA+AGG 0.583096 3_1:+78242489 Msa0377630:three_prime_UTR
CTAGAAACCTTGTTGCAATG+TGG 0.583412 3_1:-78238301 Msa0377620:five_prime_UTR
TGTTAGATCTGGCCAAGCAG+TGG 0.583759 3_1:+78241374 Msa0377630:CDS
AAAGCTTATAAAACAGATGG+TGG 0.586301 3_1:+78241432 Msa0377630:CDS
TTTGCGAATGCTTATAGGCG+GGG 0.586700 3_1:+78240090 Msa0377630:CDS
GATGTTGATATAAATAGGAA+GGG 0.593384 3_1:+78242444 Msa0377630:three_prime_UTR
TATAGGCGGGGTTGTCAGGG+AGG 0.594149 3_1:+78240102 Msa0377630:CDS
GGCGAAAGAAGAGGAAAGAT+GGG 0.603219 3_1:+78239007 Msa0377630:CDS
CCATACCTTTGACACACTGC+AGG 0.605142 3_1:-78240415 None:intergenic
TATACTAATGAATTCTGTCA+TGG 0.605433 3_1:-78242265 None:intergenic
AGATATGCAGCATCATGAAG+AGG 0.611576 3_1:-78241343 None:intergenic
GATTCAATCTGAGCAAGACC+CGG 0.614625 3_1:-78240189 None:intergenic
AGCAACTCATCTGACCAAGT+TGG 0.616072 3_1:-78240392 None:intergenic
ATGGAAATGAGAGCTATGGA+AGG 0.618281 3_1:+78238955 Msa0377630:CDS
TCTTTCTTCATCAGTCTAAG+GGG 0.619065 3_1:+78238575 Msa0377630:five_prime_UTR
TAATTGAGGAGAATTTGAGT+CGG 0.619319 3_1:+78238979 Msa0377630:CDS
TTGACGGTAAAATGCACCGC+CGG 0.623040 3_1:-78238778 None:intergenic
AGAAACCTTGTTGCAATGTG+GGG 0.624081 3_1:-78238299 Msa0377620:five_prime_UTR
GAACAGCATTCTTACTGATG+AGG 0.626718 3_1:-78239218 None:intergenic
TATCAGGACCTCTTTGGACA+GGG 0.628853 3_1:+78241320 Msa0377630:CDS
TGGTGGATGAAAGTGACCCC+AGG 0.634109 3_1:+78241449 Msa0377630:CDS
CGTGGTTTGGAATTCAACAC+CGG 0.634880 3_1:+78238759 Msa0377630:CDS
ATGTTGATATAAATAGGAAG+GGG 0.634964 3_1:+78242445 Msa0377630:three_prime_UTR
CAAGACAAAGACAACAACAT+CGG 0.636852 3_1:-78238648 None:intergenic
GTGGGCCCCACATTGCAACA+AGG 0.644552 3_1:+78238294 None:intergenic
TTGGTCCCAAGAAAACTCAT+GGG 0.648179 3_1:-78240373 None:intergenic
TGAAGAGGCCCTGTCCAAAG+AGG 0.649312 3_1:-78241328 None:intergenic
ATAAGCATAGTACGAAAACA+AGG 0.651215 3_1:-78240152 None:intergenic
GTCTTGCTCAGATTGAATCG+CGG 0.662940 3_1:+78240193 Msa0377630:CDS
TGACACCGAGAATGCTTCTG+CGG 0.667816 3_1:-78238696 None:intergenic
ATTGGCCAATGCGACCAGTG+TGG 0.674765 3_1:+78240345 Msa0377630:CDS
ATAATGCATGACCAGCTGAG+TGG 0.686765 3_1:-78242538 None:intergenic
GGTTTGGAATTCAACACCGG+CGG 0.687116 3_1:+78238762 Msa0377630:CDS
ACTCATGGGAATTTCCACAC+TGG 0.697108 3_1:-78240359 None:intergenic
GAACATTAACAAATGCTCAG+AGG 0.703894 3_1:-78242341 None:intergenic
TAAGCATAGTACGAAAACAA+GGG 0.714278 3_1:-78240151 None:intergenic
GAAAGAAGAGGAAAGATGGG+TGG 0.716195 3_1:+78239010 Msa0377630:CDS
GTTGCGGGATACGGTCGGCG+CGG 0.719001 3_1:+78238892 Msa0377630:CDS
AGGAAGCTGCAAGAACTCCG+AGG 0.730697 3_1:-78238821 None:intergenic
TATACCCAAATGGCAACCTG+GGG 0.735324 3_1:-78241465 None:intergenic
TTAGATCTGGCCAAGCAGTG+GGG 0.745563 3_1:+78241376 Msa0377630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTGACTATATTTTTTTTAT+TGG + chr3_1:78239891-78239910 Msa0377630:intron 15.0%
!!! CTATTTTAAAATTGTGTTAA+AGG + chr3_1:78241750-78241769 Msa0377630:intron 15.0%
!! TTATGTATGTATAAAAATGA+AGG + chr3_1:78242022-78242041 Msa0377630:intron 15.0%
!! TATGTATGTATAAAAATGAA+GGG + chr3_1:78242023-78242042 Msa0377630:intron 15.0%
!!! TTTTTGGATTTTCCTTTTAT+GGG - chr3_1:78238394-78238413 None:intergenic 20.0%
!!! TTTTTTGGATTTTCCTTTTA+TGG - chr3_1:78238395-78238414 None:intergenic 20.0%
!! GAAATTTGAAAAATTGAAGT+GGG - chr3_1:78238457-78238476 None:intergenic 20.0%
!! TGAAATTTGAAAAATTGAAG+TGG - chr3_1:78238458-78238477 None:intergenic 20.0%
!!! TAAAATGAGGGATATTTTTA+CGG - chr3_1:78238511-78238530 None:intergenic 20.0%
!! TTGTGAGTTAATTAAAATGA+GGG - chr3_1:78238523-78238542 None:intergenic 20.0%
!! TTTGTGAGTTAATTAAAATG+AGG - chr3_1:78238524-78238543 None:intergenic 20.0%
!!! AAAATTCAGTTACTTCTTTT+CGG + chr3_1:78238615-78238634 Msa0377630:five_prime_UTR 20.0%
!!! ATCAAACTCATTTTAAAACA+AGG - chr3_1:78239691-78239710 None:intergenic 20.0%
!!! TTTGATTTGTGTAGTTTAAT+AGG + chr3_1:78239921-78239940 Msa0377630:intron 20.0%
!!! GTTTTTTAGTGTTTATTTAC+TGG + chr3_1:78240467-78240486 Msa0377630:intron 20.0%
!! AACAGTTTAAATAGGAATTT+AGG - chr3_1:78240586-78240605 None:intergenic 20.0%
!! AAGTAAAAGAAAATTCAGTA+GGG - chr3_1:78240942-78240961 None:intergenic 20.0%
!! TGAAAAATATGAATCCAAAA+GGG - chr3_1:78241091-78241110 None:intergenic 20.0%
!! ATGAAAAATATGAATCCAAA+AGG - chr3_1:78241092-78241111 None:intergenic 20.0%
!!! AGAGTATTTTATACAATCAT+AGG - chr3_1:78241262-78241281 None:intergenic 20.0%
!!! ACTCTAAAAGTTCTTTAATT+TGG + chr3_1:78241657-78241676 Msa0377630:intron 20.0%
!! TAAAAGAATCAAAGTCATAA+TGG + chr3_1:78241680-78241699 Msa0377630:intron 20.0%
!! AATTGCATTTAGATATGATT+AGG + chr3_1:78241888-78241907 Msa0377630:intron 20.0%
!!! ATTTGTTTTAATTGCATTTG+CGG - chr3_1:78242241-78242260 None:intergenic 20.0%
!! TATTTAATCATTCATTTCTC+TGG + chr3_1:78242558-78242577 Msa0377630:three_prime_UTR 20.0%
!! TCTAAATTATGCATTTCTAA+TGG + chr3_1:78242599-78242618 Msa0377630:three_prime_UTR 20.0%
! ACCTTATATAATCCCATAAA+AGG + chr3_1:78238379-78238398 Msa0377630:five_prime_UTR 25.0%
!! TCCTTTTATGGGATTATATA+AGG - chr3_1:78238383-78238402 None:intergenic 25.0%
!!! TTCGTTCTTATCTTGTTTTT+TGG - chr3_1:78238410-78238429 None:intergenic 25.0%
!!! GCTATCATTACTTTGAAATT+TGG + chr3_1:78239143-78239162 Msa0377630:CDS 25.0%
!!! ATCATTACTTTGAAATTTGG+TGG + chr3_1:78239146-78239165 Msa0377630:CDS 25.0%
! TCTGATTTCATAATCTATCT+TGG - chr3_1:78239444-78239463 None:intergenic 25.0%
! AATAAGTTGTTTATCCAAAC+TGG + chr3_1:78239577-78239596 Msa0377630:intron 25.0%
! ATAAGTTGTTTATCCAAACT+GGG + chr3_1:78239578-78239597 Msa0377630:intron 25.0%
!!! TTTGTGTAGTGTAATTTGTT+TGG + chr3_1:78239727-78239746 Msa0377630:intron 25.0%
!!! TTGTATACTGTAATGGATTT+AGG + chr3_1:78239967-78239986 Msa0377630:intron 25.0%
! AATCAAATGAAAACAACACA+AGG - chr3_1:78240264-78240283 None:intergenic 25.0%
!!! TGTAGACATTATGGTTTTAT+TGG + chr3_1:78240327-78240346 Msa0377630:intron 25.0%
! ATTGCTAGATAATAACTTCT+CGG + chr3_1:78240531-78240550 Msa0377630:intron 25.0%
! AAGTAAAAGCAAATTCAGTA+GGG - chr3_1:78240659-78240678 None:intergenic 25.0%
! AAGTAAAAGCAAATTCAGTA+GGG - chr3_1:78240659-78240678 None:intergenic 25.0%
! AAGTAAAAGCAAATTCAGTA+GGG - chr3_1:78240659-78240678 None:intergenic 25.0%
! CAAGTAAAAGAAAATTCAGT+AGG - chr3_1:78240943-78240962 None:intergenic 25.0%
!! CTACTGAATTTTCTTTTACT+TGG + chr3_1:78240941-78240960 Msa0377630:intron 25.0%
!! TTTTTCCAGAGTTCAAATTA+CGG + chr3_1:78241222-78241241 Msa0377630:intron 25.0%
!!! TCTATTTCTTTTCATTTTCC+AGG + chr3_1:78241279-78241298 Msa0377630:intron 25.0%
! TGAAAAGCTTATAAAACAGA+TGG + chr3_1:78241429-78241448 Msa0377630:CDS 25.0%
!! TTTATTTGTACTTTTCCAGA+TGG + chr3_1:78241573-78241592 Msa0377630:intron 25.0%
! AAATTGTGTTAAAGGATCAT+CGG + chr3_1:78241758-78241777 Msa0377630:intron 25.0%
! GATATAGATAAGAGAGTAAA+AGG + chr3_1:78241793-78241812 Msa0377630:intron 25.0%
! TTATGTCATGAAAGCAATTA+TGG - chr3_1:78241930-78241949 None:intergenic 25.0%
! TTATACCATAATTGCTTTCA+TGG - chr3_1:78241986-78242005 None:intergenic 25.0%
! ATGACATGATATAGAACAAA+AGG - chr3_1:78242054-78242073 None:intergenic 25.0%
! ACTAAACATGGTAAACAAAT+CGG - chr3_1:78242085-78242104 None:intergenic 25.0%
! ATATCTCATCAAACTAAACA+TGG - chr3_1:78242097-78242116 None:intergenic 25.0%
! TATACTAATGAATTCTGTCA+TGG - chr3_1:78242268-78242287 None:intergenic 25.0%
! TGATGTTGATATAAATAGGA+AGG + chr3_1:78242443-78242462 Msa0377630:three_prime_UTR 25.0%
! GATGTTGATATAAATAGGAA+GGG + chr3_1:78242444-78242463 Msa0377630:three_prime_UTR 25.0%
! ATGTTGATATAAATAGGAAG+GGG + chr3_1:78242445-78242464 Msa0377630:three_prime_UTR 25.0%
! AAATTATGCATTTCTAATGG+AGG + chr3_1:78242602-78242621 Msa0377630:three_prime_UTR 25.0%
!! GGGATATTTTTACGGATTTA+AGG - chr3_1:78238503-78238522 None:intergenic 30.0%
TTTCTTTCTTCATCAGTCTA+AGG + chr3_1:78238573-78238592 Msa0377630:five_prime_UTR 30.0%
TTCTTTCTTCATCAGTCTAA+GGG + chr3_1:78238574-78238593 Msa0377630:five_prime_UTR 30.0%
! CAATGTTGTAATTTTGTTCC+TGG + chr3_1:78238717-78238736 Msa0377630:CDS 30.0%
!! GATTTTGTTGTAGCTAATGA+TGG + chr3_1:78238936-78238955 Msa0377630:CDS 30.0%
TAATTGAGGAGAATTTGAGT+CGG + chr3_1:78238979-78238998 Msa0377630:CDS 30.0%
!!! TTCATTGATGTTGACTCTTT+TGG + chr3_1:78239095-78239114 Msa0377630:CDS 30.0%
AAACAGTCTCACAAAACATA+TGG - chr3_1:78239355-78239374 None:intergenic 30.0%
! TATGTTTTGTGAGACTGTTT+TGG + chr3_1:78239355-78239374 Msa0377630:intron 30.0%
TAAGTTGTTTATCCAAACTG+GGG + chr3_1:78239579-78239598 Msa0377630:intron 30.0%
ATATGACTTCAATTGTGTTG+TGG + chr3_1:78239615-78239634 Msa0377630:intron 30.0%
TCTGATTATGAGAATTGTGA+TGG + chr3_1:78239750-78239769 Msa0377630:intron 30.0%
!!! TGATGGAGTATTTTAATTGC+TGG + chr3_1:78239767-78239786 Msa0377630:intron 30.0%
!!! ACCACAAGGGTTTTAAAATA+CGG - chr3_1:78239867-78239886 None:intergenic 30.0%
TCTTGTGTTGTATACTGTAA+TGG + chr3_1:78239960-78239979 Msa0377630:intron 30.0%
!! TTTAGTTCTTTAGCTGCTTA+TGG + chr3_1:78240028-78240047 Msa0377630:intron 30.0%
TCTCGTTTGAATATGTCATA+GGG - chr3_1:78240066-78240085 None:intergenic 30.0%
ATCTCGTTTGAATATGTCAT+AGG - chr3_1:78240067-78240086 None:intergenic 30.0%
ATGACATATTCAAACGAGAT+TGG + chr3_1:78240067-78240086 Msa0377630:CDS 30.0%
TAAGCATAGTACGAAAACAA+GGG - chr3_1:78240154-78240173 None:intergenic 30.0%
ATAAGCATAGTACGAAAACA+AGG - chr3_1:78240155-78240174 None:intergenic 30.0%
! TTTTCGTACTATGCTTATCA+TGG + chr3_1:78240157-78240176 Msa0377630:CDS 30.0%
! AAATTCCCATGAGTTTTCTT+GGG + chr3_1:78240368-78240387 Msa0377630:CDS 30.0%
TTGTAAGTTGTAACTAGTGT+TGG + chr3_1:78240500-78240519 Msa0377630:intron 30.0%
CAAGTAAAAGCAAATTCAGT+AGG - chr3_1:78240660-78240679 None:intergenic 30.0%
!! CTACTGAATTTGCTTTTACT+TGG + chr3_1:78240658-78240677 Msa0377630:intron 30.0%
CAAGTAAAAGCAAATTCAGT+AGG - chr3_1:78240660-78240679 None:intergenic 30.0%
!! CTACTGAATTTGCTTTTACT+TGG + chr3_1:78240658-78240677 Msa0377630:intron 30.0%
CAAGTAAAAGCAAATTCAGT+AGG - chr3_1:78240660-78240679 None:intergenic 30.0%
!! CTACTGAATTTGCTTTTACT+TGG + chr3_1:78240658-78240677 Msa0377630:intron 30.0%
GGAAAAACAATTAACATGCT+TGG - chr3_1:78241024-78241043 None:intergenic 30.0%
AAGTAAAAGCAGATTCAGTA+GGG - chr3_1:78241045-78241064 None:intergenic 30.0%
TATTTCCGTAATTTGAACTC+TGG - chr3_1:78241230-78241249 None:intergenic 30.0%
AAAGCTTATAAAACAGATGG+TGG + chr3_1:78241432-78241451 Msa0377630:CDS 30.0%
GTAAATACTGTTAGCTACTT+TGG + chr3_1:78241527-78241546 Msa0377630:intron 30.0%
TTGGTGAGAATATTGAGTTA+TGG + chr3_1:78241546-78241565 Msa0377630:intron 30.0%
!!! ATTTTTTTGAGCAGCAAAGA+AGG - chr3_1:78241954-78241973 None:intergenic 30.0%
TTATGCCATGAAAGCAATTA+TGG + chr3_1:78241978-78241997 Msa0377630:intron 30.0%
TCTGCAATAAACAAAGTACA+AGG - chr3_1:78242188-78242207 None:intergenic 30.0%
! TGTACTTTGTTTATTGCAGA+AGG + chr3_1:78242188-78242207 Msa0377630:intron 30.0%
! GTACTTTGTTTATTGCAGAA+GGG + chr3_1:78242189-78242208 Msa0377630:intron 30.0%
TATAGCTAAAGAACTATTGC+CGG + chr3_1:78242284-78242303 Msa0377630:CDS 30.0%
! TTAATGTTCACATGAGTTGA+AGG + chr3_1:78242355-78242374 Msa0377630:three_prime_UTR 30.0%
! TAGTAATAGTGAAGCATTTG+AGG + chr3_1:78242419-78242438 Msa0377630:three_prime_UTR 30.0%
AGGCTGATGTTGATATAAAT+AGG + chr3_1:78242439-78242458 Msa0377630:three_prime_UTR 30.0%
TAGAAACCTTGTTGCAATGT+GGG - chr3_1:78238303-78238322 Msa0377620:five_prime_UTR 35.0%
AACTCACAAAACACGTGTAA+CGG + chr3_1:78238534-78238553 Msa0377630:five_prime_UTR 35.0%
TCTTTCTTCATCAGTCTAAG+GGG + chr3_1:78238575-78238594 Msa0377630:five_prime_UTR 35.0%
CAAGACAAAGACAACAACAT+CGG - chr3_1:78238651-78238670 None:intergenic 35.0%
! AATGATGGAAATGAGAGCTA+TGG + chr3_1:78238951-78238970 Msa0377630:CDS 35.0%
AATTGAGGAGAATTTGAGTC+GGG + chr3_1:78238980-78238999 Msa0377630:CDS 35.0%
!! GAAGTGATTCTTCGTTTTTG+AGG + chr3_1:78239117-78239136 Msa0377630:CDS 35.0%
! CTTTATGTCACTTCAACTGA+TGG + chr3_1:78239173-78239192 Msa0377630:CDS 35.0%
!!! GAGTATTTTAATTGCTGGCA+TGG + chr3_1:78239772-78239791 Msa0377630:intron 35.0%
!!! ACCGTATTTTAAAACCCTTG+TGG + chr3_1:78239863-78239882 Msa0377630:intron 35.0%
!! TGTAATGGATTTAGGACCTT+TGG + chr3_1:78239975-78239994 Msa0377630:intron 35.0%
!! ATTGGTTTGCGAATGCTTAT+AGG + chr3_1:78240085-78240104 Msa0377630:CDS 35.0%
ACGAAAACAAGGGAGTTATA+TGG - chr3_1:78240144-78240163 None:intergenic 35.0%
AATGTCTACAGCAATCACAA+TGG - chr3_1:78240317-78240336 None:intergenic 35.0%
TGTGATTGCTGTAGACATTA+TGG + chr3_1:78240318-78240337 Msa0377630:intron 35.0%
! GAAATTCCCATGAGTTTTCT+TGG + chr3_1:78240367-78240386 Msa0377630:CDS 35.0%
AACACTAAAAAACCTCGATG+AGG - chr3_1:78240460-78240479 None:intergenic 35.0%
CATGCAGCAACAGTTTAAAT+AGG - chr3_1:78240594-78240613 None:intergenic 35.0%
GGAAAAGCAATTAACATGCT+TGG - chr3_1:78240638-78240657 None:intergenic 35.0%
GGAAAAGCAATTAACATGCT+TGG - chr3_1:78240638-78240657 None:intergenic 35.0%
GGAAAAGCAATTAACATGCT+TGG - chr3_1:78240638-78240657 None:intergenic 35.0%
CAAGTAAAAGCAGATTCAGT+AGG - chr3_1:78241046-78241065 None:intergenic 35.0%
!! CTACTGAATCTGCTTTTACT+TGG + chr3_1:78241044-78241063 Msa0377630:intron 35.0%
! AAGTTAACGAATCACCCTTT+TGG + chr3_1:78241074-78241093 Msa0377630:intron 35.0%
TCATGATGCTGCATATCTTA+CGG + chr3_1:78241348-78241367 Msa0377630:CDS 35.0%
TCTTACGGATATGTTAGATC+TGG + chr3_1:78241363-78241382 Msa0377630:CDS 35.0%
TCCAACTTGATATACCCAAA+TGG - chr3_1:78241478-78241497 None:intergenic 35.0%
!!! GTGGAGTATTGATTTTTGCA+CGG - chr3_1:78241603-78241622 None:intergenic 35.0%
AAATCAATACTCCACCTCTT+AGG + chr3_1:78241608-78241627 Msa0377630:CDS 35.0%
AATCAATACTCCACCTCTTA+GGG + chr3_1:78241609-78241628 Msa0377630:CDS 35.0%
CTCATATGCATCATGAAAAC+TGG + chr3_1:78241822-78241841 Msa0377630:intron 35.0%
CGGAGAAACTACTAAAGAAT+AGG + chr3_1:78241850-78241869 Msa0377630:intron 35.0%
CAAAGTACAAGGTAAGTGAA+TGG - chr3_1:78242177-78242196 None:intergenic 35.0%
AACCATTAAGAGACAGATAC+CGG - chr3_1:78242306-78242325 None:intergenic 35.0%
GTATCTGTCTCTTAATGGTT+TGG + chr3_1:78242306-78242325 Msa0377630:exon 35.0%
GAACATTAACAAATGCTCAG+AGG - chr3_1:78242344-78242363 None:intergenic 35.0%
! AGGGGACATACTTCATATTT+TGG + chr3_1:78242463-78242482 Msa0377630:three_prime_UTR 35.0%
ATGAAGTTGTTGATCATGCA+AGG + chr3_1:78242489-78242508 Msa0377630:three_prime_UTR 35.0%
ATTTCTAATGGAGGCTTCTT+TGG + chr3_1:78242611-78242630 Msa0377630:three_prime_UTR 35.0%
AGAAACCTTGTTGCAATGTG+GGG - chr3_1:78238302-78238321 Msa0377620:five_prime_UTR 40.0%
CTAGAAACCTTGTTGCAATG+TGG - chr3_1:78238304-78238323 None:intergenic 40.0%
CGATGTTGTTGTCTTTGTCT+TGG + chr3_1:78238649-78238668 Msa0377630:exon 40.0%
TCCTGGAAACGTTTCTCAAA+CGG + chr3_1:78238734-78238753 Msa0377630:CDS 40.0%
ATGGAAATGAGAGCTATGGA+AGG + chr3_1:78238955-78238974 Msa0377630:CDS 40.0%
GAGCTATGGAAGGATAATTG+AGG + chr3_1:78238965-78238984 Msa0377630:CDS 40.0%
TCAACTGATGGTTTCTCTTC+TGG + chr3_1:78239185-78239204 Msa0377630:CDS 40.0%
GAACAGCATTCTTACTGATG+AGG - chr3_1:78239221-78239240 None:intergenic 40.0%
AGTCAATCTAAACATGCCCT+TGG - chr3_1:78239313-78239332 None:intergenic 40.0%
CATAACATTTAGCCCCAGTT+TGG - chr3_1:78239594-78239613 None:intergenic 40.0%
CAAACTGGGGCTAAATGTTA+TGG + chr3_1:78239592-78239611 Msa0377630:intron 40.0%
TGAAACAAATGCTGCAGATG+TGG + chr3_1:78239805-78239824 Msa0377630:intron 40.0%
ATAGTCACAGTACACCACAA+GGG - chr3_1:78239880-78239899 None:intergenic 40.0%
TATAGTCACAGTACACCACA+AGG - chr3_1:78239881-78239900 None:intergenic 40.0%
! ATGGATTTAGGACCTTTGGT+TGG + chr3_1:78239979-78239998 Msa0377630:intron 40.0%
AGTTACAAACCACCAACCAA+AGG - chr3_1:78239994-78240013 None:intergenic 40.0%
! CTTATCATGGACCTGTTTTC+CGG + chr3_1:78240170-78240189 Msa0377630:CDS 40.0%
! TTATCATGGACCTGTTTTCC+GGG + chr3_1:78240171-78240190 Msa0377630:CDS 40.0%
CAAGGCATGTCACAAACATA+AGG - chr3_1:78240246-78240265 None:intergenic 40.0%
TTGGTCCCAAGAAAACTCAT+GGG - chr3_1:78240376-78240395 None:intergenic 40.0%
! TGTTTGAGATTACCTCATCG+AGG + chr3_1:78240445-78240464 Msa0377630:intron 40.0%
ATCATGTTTCATGCAGCAAC+AGG - chr3_1:78240603-78240622 None:intergenic 40.0%
! TTAAGGTATCAGGACCTCTT+TGG + chr3_1:78241314-78241333 Msa0377630:CDS 40.0%
AGATATGCAGCATCATGAAG+AGG - chr3_1:78241346-78241365 None:intergenic 40.0%
ATATACCCAAATGGCAACCT+GGG - chr3_1:78241469-78241488 None:intergenic 40.0%
GCCATTTGGGTATATCAAGT+TGG + chr3_1:78241474-78241493 Msa0377630:CDS 40.0%
!! TGGGTATATCAAGTTGGATG+AGG + chr3_1:78241480-78241499 Msa0377630:CDS 40.0%
CATCATGAAAACTGGCAGTT+CGG + chr3_1:78241830-78241849 Msa0377630:intron 40.0%
GTACAAGGTAAGTGAATGGT+TGG - chr3_1:78242173-78242192 None:intergenic 40.0%
! CTTAATGGTTTGGCCTCTAA+AGG + chr3_1:78242316-78242335 Msa0377630:exon 40.0%
! TCATAGAGTTGCTTTGTGAC+TGG - chr3_1:78242656-78242675 None:intergenic 40.0%
!! ATTCTCCGCAGAAGCATTCT+CGG + chr3_1:78238691-78238710 Msa0377630:CDS 45.0%
TCCGTTTGAGAAACGTTTCC+AGG - chr3_1:78238738-78238757 None:intergenic 45.0%
AACGTTTCTCAAACGGAACG+TGG + chr3_1:78238741-78238760 Msa0377630:CDS 45.0%
TTCTCAAACGGAACGTGGTT+TGG + chr3_1:78238746-78238765 Msa0377630:CDS 45.0%
! CGTGGTTTGGAATTCAACAC+CGG + chr3_1:78238759-78238778 Msa0377630:CDS 45.0%
TCCTTGCAGAAGAAGGCTAA+TGG + chr3_1:78238840-78238859 Msa0377630:CDS 45.0%
!! TCCATTAGCCTTCTTCTGCA+AGG - chr3_1:78238844-78238863 None:intergenic 45.0%
CGTGTTCTTGATGCACTTTG+TGG + chr3_1:78238870-78238889 Msa0377630:CDS 45.0%
CTTGATGCACTTTGTGGTTG+CGG + chr3_1:78238876-78238895 Msa0377630:CDS 45.0%
TTGATGCACTTTGTGGTTGC+GGG + chr3_1:78238877-78238896 Msa0377630:CDS 45.0%
GGAGAATTTGAGTCGGGTTT+CGG + chr3_1:78238986-78239005 Msa0377630:CDS 45.0%
GGCGAAAGAAGAGGAAAGAT+GGG + chr3_1:78239007-78239026 Msa0377630:CDS 45.0%
GAAAGAAGAGGAAAGATGGG+TGG + chr3_1:78239010-78239029 Msa0377630:CDS 45.0%
ACTGATGGTTTCTCTTCTGG+TGG + chr3_1:78239188-78239207 Msa0377630:CDS 45.0%
TGCTCACAGTCATCATACCA+AGG + chr3_1:78239293-78239312 Msa0377630:intron 45.0%
GCTCACAGTCATCATACCAA+GGG + chr3_1:78239294-78239313 Msa0377630:intron 45.0%
GAAACCCTGATGTTGTTGTC+TGG + chr3_1:78239652-78239671 Msa0377630:intron 45.0%
GCAACCAGACAACAACATCA+GGG - chr3_1:78239659-78239678 None:intergenic 45.0%
TGCAACCAGACAACAACATC+AGG - chr3_1:78239660-78239679 None:intergenic 45.0%
! GATTTAGGACCTTTGGTTGG+TGG + chr3_1:78239982-78240001 Msa0377630:intron 45.0%
GGTTTGCGAATGCTTATAGG+CGG + chr3_1:78240088-78240107 Msa0377630:CDS 45.0%
GTTTGCGAATGCTTATAGGC+GGG + chr3_1:78240089-78240108 Msa0377630:CDS 45.0%
TTTGCGAATGCTTATAGGCG+GGG + chr3_1:78240090-78240109 Msa0377630:CDS 45.0%
GATTCAATCTGAGCAAGACC+CGG - chr3_1:78240192-78240211 None:intergenic 45.0%
GTCTTGCTCAGATTGAATCG+CGG + chr3_1:78240193-78240212 Msa0377630:CDS 45.0%
TCTTGCTCAGATTGAATCGC+GGG + chr3_1:78240194-78240213 Msa0377630:CDS 45.0%
AATTTCCACACTGGTCGCAT+TGG - chr3_1:78240353-78240372 None:intergenic 45.0%
ACTCATGGGAATTTCCACAC+TGG - chr3_1:78240362-78240381 None:intergenic 45.0%
GTTGGTCCCAAGAAAACTCA+TGG - chr3_1:78240377-78240396 None:intergenic 45.0%
! GAGTTTTCTTGGGACCAACT+TGG + chr3_1:78240378-78240397 Msa0377630:CDS 45.0%
AGCAACTCATCTGACCAAGT+TGG - chr3_1:78240395-78240414 None:intergenic 45.0%
! AGTGTGTCAAAGGTATGGTG+TGG + chr3_1:78240420-78240439 Msa0377630:intron 45.0%
! TCAGACTCGCTTAAGGTATC+AGG + chr3_1:78241304-78241323 Msa0377630:CDS 45.0%
TATCAGGACCTCTTTGGACA+GGG + chr3_1:78241320-78241339 Msa0377630:CDS 45.0%
TATACCCAAATGGCAACCTG+GGG - chr3_1:78241468-78241487 None:intergenic 45.0%
GATATACCCAAATGGCAACC+TGG - chr3_1:78241470-78241489 None:intergenic 45.0%
!!! CTTTTAGAGTACCTCGTGCA+GGG - chr3_1:78241647-78241666 None:intergenic 45.0%
!!! ACTTTTAGAGTACCTCGTGC+AGG - chr3_1:78241648-78241667 None:intergenic 45.0%
TGCCGGTATCTGTCTCTTAA+TGG + chr3_1:78242301-78242320 Msa0377630:CDS 45.0%
ATGCTCAGAGGAACCTTTAG+AGG - chr3_1:78242332-78242351 None:intergenic 45.0%
CAGCTGAGTGGAATGTCAAA+AGG - chr3_1:78242529-78242548 None:intergenic 45.0%
! CTTTTGACATTCCACTCAGC+TGG + chr3_1:78242527-78242546 Msa0377630:three_prime_UTR 45.0%
ATAATGCATGACCAGCTGAG+TGG - chr3_1:78242541-78242560 None:intergenic 45.0%
GAATGCTTCTGCGGAGAATG+AGG - chr3_1:78238690-78238709 None:intergenic 50.0%
TGACACCGAGAATGCTTCTG+CGG - chr3_1:78238699-78238718 None:intergenic 50.0%
! GGTTTGGAATTCAACACCGG+CGG + chr3_1:78238762-78238781 Msa0377630:CDS 50.0%
TTGACGGTAAAATGCACCGC+CGG - chr3_1:78238781-78238800 None:intergenic 50.0%
TGCAGCTTCCTTGCAGAAGA+AGG + chr3_1:78238833-78238852 Msa0377630:CDS 50.0%
CACTTTGTGGTTGCGGGATA+CGG + chr3_1:78238883-78238902 Msa0377630:CDS 50.0%
CGGCGAAAGAAGAGGAAAGA+TGG + chr3_1:78239006-78239025 Msa0377630:CDS 50.0%
! GTTTCTCTTCTGGTGGACAC+AGG + chr3_1:78239195-78239214 Msa0377630:CDS 50.0%
GCGGGAAGCTTCATGATAGT+AGG + chr3_1:78240212-78240231 Msa0377630:CDS 50.0%
TTGCTCCTGCAGTGTGTCAA+AGG + chr3_1:78240410-78240429 Msa0377630:CDS 50.0%
CCATACCTTTGACACACTGC+AGG - chr3_1:78240418-78240437 None:intergenic 50.0%
CCTGCAGTGTGTCAAAGGTA+TGG + chr3_1:78240415-78240434 Msa0377630:intron 50.0%
! CCTTAAGCGAGTCTGAAACC+TGG - chr3_1:78241300-78241319 None:intergenic 50.0%
CCAGGTTTCAGACTCGCTTA+AGG + chr3_1:78241297-78241316 Msa0377630:intron 50.0%
GTATCAGGACCTCTTTGGAC+AGG + chr3_1:78241319-78241338 Msa0377630:CDS 50.0%
TGTTAGATCTGGCCAAGCAG+TGG + chr3_1:78241374-78241393 Msa0377630:CDS 50.0%
GTTAGATCTGGCCAAGCAGT+GGG + chr3_1:78241375-78241394 Msa0377630:CDS 50.0%
TTAGATCTGGCCAAGCAGTG+GGG + chr3_1:78241376-78241395 Msa0377630:CDS 50.0%
!! TGGGGATGGATTGGTTGTGA+TGG + chr3_1:78241394-78241413 Msa0377630:CDS 50.0%
! TTTTTGCACGGCTTGCCATC+TGG - chr3_1:78241591-78241610 None:intergenic 50.0%
!! TACCGTCAAGAAAGCGCCAC+CGG + chr3_1:78238792-78238811 Msa0377630:CDS 55.0%
AAGAACTCCGAGGTCACGTC+CGG - chr3_1:78238814-78238833 None:intergenic 55.0%
AGGAAGCTGCAAGAACTCCG+AGG - chr3_1:78238824-78238843 None:intergenic 55.0%
TTGTGGTTGCGGGATACGGT+CGG + chr3_1:78238887-78238906 Msa0377630:CDS 55.0%
TCGGGTTTCGGCGAAAGAAG+AGG + chr3_1:78238998-78239017 Msa0377630:CDS 55.0%
TGCTTATAGGCGGGGTTGTC+AGG + chr3_1:78240098-78240117 Msa0377630:CDS 55.0%
GCTTATAGGCGGGGTTGTCA+GGG + chr3_1:78240099-78240118 Msa0377630:CDS 55.0%
TGTCAGGGAGGCTGCATTGT+TGG + chr3_1:78240114-78240133 Msa0377630:CDS 55.0%
GTCAGGGAGGCTGCATTGTT+GGG + chr3_1:78240115-78240134 Msa0377630:CDS 55.0%
TCAGGGAGGCTGCATTGTTG+GGG + chr3_1:78240116-78240135 Msa0377630:CDS 55.0%
CTGAGCAAGACCCGGAAAAC+AGG - chr3_1:78240184-78240203 None:intergenic 55.0%
ATTGGCCAATGCGACCAGTG+TGG + chr3_1:78240345-78240364 Msa0377630:CDS 55.0%
TGAAGAGGCCCTGTCCAAAG+AGG - chr3_1:78241331-78241350 None:intergenic 55.0%
ACCAATCCATCCCCACTGCT+TGG - chr3_1:78241389-78241408 None:intergenic 55.0%
! TGGTGGATGAAAGTGACCCC+AGG + chr3_1:78241449-78241468 Msa0377630:CDS 55.0%
AGTGACCCCAGGTTGCCATT+TGG + chr3_1:78241460-78241479 Msa0377630:CDS 55.0%
! GTGACCCCAGGTTGCCATTT+GGG + chr3_1:78241461-78241480 Msa0377630:CDS 55.0%
CTCATCAAGGCCCTAAGAGG+TGG - chr3_1:78241622-78241641 None:intergenic 55.0%
AGAAGGGTTATGCTGCGAGC+AGG + chr3_1:78242205-78242224 Msa0377630:intron 55.0%
GTCCGGTGGCGCTTTCTTGA+CGG - chr3_1:78238797-78238816 None:intergenic 60.0%
ACGGTCGGCGCGGTATTTGA+AGG + chr3_1:78238902-78238921 Msa0377630:CDS 60.0%
TATAGGCGGGGTTGTCAGGG+AGG + chr3_1:78240102-78240121 Msa0377630:CDS 60.0%
ATCTGGCCAAGCAGTGGGGA+TGG + chr3_1:78241380-78241399 Msa0377630:CDS 60.0%
GCCAAGCAGTGGGGATGGAT+TGG + chr3_1:78241385-78241404 Msa0377630:CDS 60.0%
GCGCTCATCAAGGCCCTAAG+AGG - chr3_1:78241625-78241644 None:intergenic 60.0%
AACTCCGAGGTCACGTCCGG+TGG - chr3_1:78238811-78238830 None:intergenic 65.0%
! CTCGTGCAGGGCGCTCATCA+AGG - chr3_1:78241635-78241654 None:intergenic 65.0%
CTTGATGAGCGCCCTGCACG+AGG + chr3_1:78241633-78241652 Msa0377630:CDS 65.0%
AGCGCCACCGGACGTGACCT+CGG + chr3_1:78238804-78238823 Msa0377630:CDS 70.0%
GTTGCGGGATACGGTCGGCG+CGG + chr3_1:78238892-78238911 Msa0377630:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 78238298 78242698 78238298 ID=Msa0377630;Name=Msa0377630
chr3_1 mRNA 78238298 78242698 78238298 ID=Msa0377630-mRNA-1;Parent=Msa0377630;Name=Msa0377630-mRNA-1;_AED=0.04;_eAED=0.04;_QI=353|1|1|1|1|1|6|378|417
chr3_1 exon 78238298 78239225 78238298 ID=Msa0377630-mRNA-1:exon:18761;Parent=Msa0377630-mRNA-1
chr3_1 exon 78240033 78240233 78240033 ID=Msa0377630-mRNA-1:exon:18762;Parent=Msa0377630-mRNA-1
chr3_1 exon 78240332 78240431 78240332 ID=Msa0377630-mRNA-1:exon:18763;Parent=Msa0377630-mRNA-1
chr3_1 exon 78241301 78241501 78241301 ID=Msa0377630-mRNA-1:exon:18764;Parent=Msa0377630-mRNA-1
chr3_1 exon 78241592 78241654 78241592 ID=Msa0377630-mRNA-1:exon:18765;Parent=Msa0377630-mRNA-1
chr3_1 exon 78242207 78242698 78242207 ID=Msa0377630-mRNA-1:exon:18766;Parent=Msa0377630-mRNA-1
chr3_1 five_prime_UTR 78238298 78238650 78238298 ID=Msa0377630-mRNA-1:five_prime_utr;Parent=Msa0377630-mRNA-1
chr3_1 CDS 78238651 78239225 78238651 ID=Msa0377630-mRNA-1:cds;Parent=Msa0377630-mRNA-1
chr3_1 CDS 78240033 78240233 78240033 ID=Msa0377630-mRNA-1:cds;Parent=Msa0377630-mRNA-1
chr3_1 CDS 78240332 78240431 78240332 ID=Msa0377630-mRNA-1:cds;Parent=Msa0377630-mRNA-1
chr3_1 CDS 78241301 78241501 78241301 ID=Msa0377630-mRNA-1:cds;Parent=Msa0377630-mRNA-1
chr3_1 CDS 78241592 78241654 78241592 ID=Msa0377630-mRNA-1:cds;Parent=Msa0377630-mRNA-1
chr3_1 CDS 78242207 78242320 78242207 ID=Msa0377630-mRNA-1:cds;Parent=Msa0377630-mRNA-1
chr3_1 three_prime_UTR 78242321 78242698 78242321 ID=Msa0377630-mRNA-1:three_prime_utr;Parent=Msa0377630-mRNA-1
Gene Sequence

>Msa0377630

ATGTTGTTGTCTTTGTCTTGGTCTTTCACTTTTTCTCCTCATTCTCCGCAGAAGCATTCTCGGTGTCAATGTTGTAATTTTGTTCCTGGAAACGTTTCTCAAACGGAACGTGGTTTGGAATTCAACACCGGCGGTGCATTTTACCGTCAAGAAAGCGCCACCGGACGTGACCTCGGAGTTCTTGCAGCTTCCTTGCAGAAGAAGGCTAATGGAAGCTTGCGTGTTCTTGATGCACTTTGTGGTTGCGGGATACGGTCGGCGCGGTATTTGAAGGAAGCTGAAGCTGATTTTGTTGTAGCTAATGATGGAAATGAGAGCTATGGAAGGATAATTGAGGAGAATTTGAGTCGGGTTTCGGCGAAAGAAGAGGAAAGATGGGTGGTTACTCATTTAGAAGCTAATAGAGTTATGACTGATTATTACATGCAGAAGAGTTTGTTTGATTTCATTGATGTTGACTCTTTTGGAAGTGATTCTTCGTTTTTGAGGTCTGCTATCATTACTTTGAAATTTGGTGGTCTGCTTTATGTCACTTCAACTGATGGTTTCTCTTCTGGTGGACACAGGCCTCATCATTCTTTAGCTGCTTATGGAGCTTATGTGCGCCCTATGACATATTCAAACGAGATTGGTTTGCGAATGCTTATAGGCGGGGTTGTCAGGGAGGCTGCATTGTTGGGGTACCATATAACTCCCTTGTTTTCGTACTATGCTTATCATGGACCTGTTTTCCGGGTCTTGCTCAGATTGAATCGCGGGAAGCTTCATGATAGTAGACATTATGGTTTTATTGGCCAATGCGACCAGTGTGGAAATTCCCATGAGTTTTCTTGGGACCAACTTGGTCAGATGAGTTGCTCCTGCAGTGTGTCAAAGGTTTCAGACTCGCTTAAGGTATCAGGACCTCTTTGGACAGGGCCTCTTCATGATGCTGCATATCTTACGGATATGTTAGATCTGGCCAAGCAGTGGGGATGGATTGGTTGTGATGGTAAAGACAGTCTTGAAAAGCTTATAAAACAGATGGTGGATGAAAGTGACCCCAGGTTGCCATTTGGGTATATCAAGTTGGATGAGATGGCAAGCCGTGCAAAAATCAATACTCCACCTCTTAGGGCCTTGATGAGCGCCCTGCACGAGAAGGGTTATGCTGCGAGCAGGTCTCACATAACCGCAAATGCAATTAAAACAAATTGCTCCATGACAGAATTCATTAGTATAGCTAAAGAACTATTGCCGGTATCTGTCTCTTAA

Protein sequence

>Msa0377630

MLLSLSWSFTFSPHSPQKHSRCQCCNFVPGNVSQTERGLEFNTGGAFYRQESATGRDLGVLAASLQKKANGSLRVLDALCGCGIRSARYLKEAEADFVVANDGNESYGRIIEENLSRVSAKEEERWVVTHLEANRVMTDYYMQKSLFDFIDVDSFGSDSSFLRSAIITLKFGGLLYVTSTDGFSSGGHRPHHSLAAYGAYVRPMTYSNEIGLRMLIGGVVREAALLGYHITPLFSYYAYHGPVFRVLLRLNRGKLHDSRHYGFIGQCDQCGNSHEFSWDQLGQMSCSCSVSKVSDSLKVSGPLWTGPLHDAAYLTDMLDLAKQWGWIGCDGKDSLEKLIKQMVDESDPRLPFGYIKLDEMASRAKINTPPLRALMSALHEKGYAASRSHITANAIKTNCSMTEFISIAKELLPVSVS*