AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1431960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1431960 MtrunA17_Chr3g0128891 97.122 417 12 0 1 417 1 417 0.0 845
Msa1431960 MtrunA17_Chr6g0455421 26.346 353 220 12 74 402 210 546 1.14e-21 97.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1431960 AT3G56330.1 63.476 397 143 1 18 412 35 431 0.0 540
Msa1431960 AT5G15810.1 24.419 344 236 8 74 401 123 458 3.66e-19 90.1
Msa1431960 AT3G02320.1 24.324 370 248 10 52 401 101 458 4.04e-17 84.0

Find 145 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGTTCTTTAGCTGCTTA+TGG 0.167466 tig0026926:+12580 Msa1431960:intron
GCTATCATTACTTTGAAATT+TGG 0.203394 tig0026926:+11695 Msa1431960:CDS
AAATCAATACTCCACCTCTT+AGG 0.208380 tig0026926:+14392 Msa1431960:CDS
AGGGGACATACTTCATATTT+TGG 0.210714 tig0026926:+15198 Msa1431960:three_prime_UTR
TCAACTGATGGTTTCTCTTC+TGG 0.214021 tig0026926:+11737 Msa1431960:CDS
TGCCGGTATCTGTCTCTTAA+TGG 0.225155 tig0026926:+15036 Msa1431960:CDS
TTCATTGATGTTGACTCTTT+TGG 0.235166 tig0026926:+11647 Msa1431960:CDS
TGTCAGGGAGGCTGCATTGT+TGG 0.250036 tig0026926:+12666 Msa1431960:CDS
GTCAGGGAGGCTGCATTGTT+GGG 0.255296 tig0026926:+12667 Msa1431960:CDS
TGCTTATAGGCGGGGTTGTC+AGG 0.255906 tig0026926:+12650 Msa1431960:CDS
TTTCTTTCTTCATCAGTCTA+AGG 0.257474 tig0026926:+11125 Msa1431960:five_prime_UTR
ATTTCTAATGGAGGCTTCTT+TGG 0.267322 tig0026926:+15346 Msa1431960:three_prime_UTR
ACCTTATATAATCCCATAAA+AGG 0.272404 tig0026926:+10931 Msa1431960:five_prime_UTR
ATTGGTTTGCGAATGCTTAT+AGG 0.273451 tig0026926:+12637 Msa1431960:CDS
TGTGATTGCTGTAGACATTA+TGG 0.290218 tig0026926:+12870 Msa1431960:intron
TTCTCAAACGGAACGTGGTT+TGG 0.290253 tig0026926:+11298 Msa1431960:CDS
AGGCTGATGTTGATATAAAT+AGG 0.313209 tig0026926:+15174 Msa1431960:three_prime_UTR
GTGACCCCAGGTTGCCATTT+GGG 0.321091 tig0026926:+14245 Msa1431960:CDS
TCAGACTCGCTTAAGGTATC+AGG 0.326059 tig0026926:+14088 Msa1431960:CDS
GGAGAATTTGAGTCGGGTTT+CGG 0.326905 tig0026926:+11538 Msa1431960:CDS
TATTTAATCATTCATTTCTC+TGG 0.345554 tig0026926:+15293 Msa1431960:three_prime_UTR
TTGATGCACTTTGTGGTTGC+GGG 0.347797 tig0026926:+11429 Msa1431960:CDS
TCCGTTTGAGAAACGTTTCC+AGG 0.355207 tig0026926:-11287 None:intergenic
TTAAGGTATCAGGACCTCTT+TGG 0.359066 tig0026926:+14098 Msa1431960:CDS
ATCTCGTTTGAATATGTCAT+AGG 0.371894 tig0026926:-12616 None:intergenic
CGATGTTGTTGTCTTTGTCT+TGG 0.377343 tig0026926:+11201 Msa1431960:exon
GTATCTGTCTCTTAATGGTT+TGG 0.380877 tig0026926:+15041 Msa1431960:exon
CTTAATGGTTTGGCCTCTAA+AGG 0.384391 tig0026926:+15051 Msa1431960:exon
ATTCTCCGCAGAAGCATTCT+CGG 0.385655 tig0026926:+11243 Msa1431960:CDS
GTCCGGTGGCGCTTTCTTGA+CGG 0.386557 tig0026926:-11346 None:intergenic
TCTAAATTATGCATTTCTAA+TGG 0.390006 tig0026926:+15334 Msa1431960:three_prime_UTR
ATGCTCAGAGGAACCTTTAG+AGG 0.391287 tig0026926:-15064 None:intergenic
ATGACATATTCAAACGAGAT+TGG 0.394373 tig0026926:+12619 Msa1431960:CDS
TGCAGCTTCCTTGCAGAAGA+AGG 0.398526 tig0026926:+11385 Msa1431960:CDS
CTGAGCAAGACCCGGAAAAC+AGG 0.402440 tig0026926:-12733 None:intergenic
CGTGTTCTTGATGCACTTTG+TGG 0.405770 tig0026926:+11422 Msa1431960:CDS
CACTTTGTGGTTGCGGGATA+CGG 0.407311 tig0026926:+11435 Msa1431960:CDS
AATCAATACTCCACCTCTTA+GGG 0.418319 tig0026926:+14393 Msa1431960:CDS
CCAGGTTTCAGACTCGCTTA+AGG 0.425418 tig0026926:+14081 Msa1431960:intron
TTCTTTCTTCATCAGTCTAA+GGG 0.428406 tig0026926:+11126 Msa1431960:five_prime_UTR
TTAATGTTCACATGAGTTGA+AGG 0.430280 tig0026926:+15090 Msa1431960:three_prime_UTR
CTTTATGTCACTTCAACTGA+TGG 0.431973 tig0026926:+11725 Msa1431960:CDS
TCCTTGCAGAAGAAGGCTAA+TGG 0.432598 tig0026926:+11392 Msa1431960:CDS
GATATACCCAAATGGCAACC+TGG 0.432960 tig0026926:-14251 None:intergenic
TCCTGGAAACGTTTCTCAAA+CGG 0.434943 tig0026926:+11286 Msa1431960:CDS
ACGAAAACAAGGGAGTTATA+TGG 0.435228 tig0026926:-12693 None:intergenic
CTTGATGCACTTTGTGGTTG+CGG 0.436079 tig0026926:+11428 Msa1431960:CDS
AGTGACCCCAGGTTGCCATT+TGG 0.437494 tig0026926:+14244 Msa1431960:CDS
ATCATTACTTTGAAATTTGG+TGG 0.439529 tig0026926:+11698 Msa1431960:CDS
GCCAAGCAGTGGGGATGGAT+TGG 0.442704 tig0026926:+14169 Msa1431960:CDS
TATAGCTAAAGAACTATTGC+CGG 0.443111 tig0026926:+15019 Msa1431960:CDS
AATTGAGGAGAATTTGAGTC+GGG 0.454310 tig0026926:+11532 Msa1431960:CDS
TAGTAATAGTGAAGCATTTG+AGG 0.474582 tig0026926:+15154 Msa1431960:three_prime_UTR
CTCGTGCAGGGCGCTCATCA+AGG 0.477774 tig0026926:-14416 None:intergenic
TCATAGAGTTGCTTTGTGAC+TGG 0.478652 tig0026926:-15388 None:intergenic
CGGCGAAAGAAGAGGAAAGA+TGG 0.482786 tig0026926:+11558 Msa1431960:CDS
TCATGATGCTGCATATCTTA+CGG 0.488223 tig0026926:+14132 Msa1431960:CDS
ACTGATGGTTTCTCTTCTGG+TGG 0.490556 tig0026926:+11740 Msa1431960:CDS
TTGTGAGTTAATTAAAATGA+GGG 0.492305 tig0026926:-11072 None:intergenic
GTATCAGGACCTCTTTGGAC+AGG 0.504615 tig0026926:+14103 Msa1431960:CDS
ATCTGGCCAAGCAGTGGGGA+TGG 0.507155 tig0026926:+14164 Msa1431960:CDS
ACGGTCGGCGCGGTATTTGA+AGG 0.509215 tig0026926:+11454 Msa1431960:CDS
TTTGTGAGTTAATTAAAATG+AGG 0.510649 tig0026926:-11073 None:intergenic
TCTTACGGATATGTTAGATC+TGG 0.511156 tig0026926:+14147 Msa1431960:CDS
GCTTATAGGCGGGGTTGTCA+GGG 0.511350 tig0026926:+12651 Msa1431960:CDS
CAGCTGAGTGGAATGTCAAA+AGG 0.512417 tig0026926:-15261 None:intergenic
TGATGTTGATATAAATAGGA+AGG 0.520359 tig0026926:+15178 Msa1431960:three_prime_UTR
TGGGGATGGATTGGTTGTGA+TGG 0.523059 tig0026926:+14178 Msa1431960:CDS
AGCGCCACCGGACGTGACCT+CGG 0.524212 tig0026926:+11356 Msa1431960:CDS
TCAGGGAGGCTGCATTGTTG+GGG 0.525127 tig0026926:+12668 Msa1431960:CDS
GTTTCTCTTCTGGTGGACAC+AGG 0.525712 tig0026926:+11747 Msa1431960:CDS
TAGAAACCTTGTTGCAATGT+GGG 0.526171 tig0026926:-10852 Msa1431950:five_prime_UTR
ACCAATCCATCCCCACTGCT+TGG 0.526173 tig0026926:-14170 None:intergenic
GTTTGCGAATGCTTATAGGC+GGG 0.526475 tig0026926:+12641 Msa1431960:CDS
GAATGCTTCTGCGGAGAATG+AGG 0.527706 tig0026926:-11239 None:intergenic
AAGAACTCCGAGGTCACGTC+CGG 0.529717 tig0026926:-11363 None:intergenic
GCCATTTGGGTATATCAAGT+TGG 0.531607 tig0026926:+14258 Msa1431960:CDS
AATGATGGAAATGAGAGCTA+TGG 0.531886 tig0026926:+11503 Msa1431960:CDS
AATTTCCACACTGGTCGCAT+TGG 0.532664 tig0026926:-12902 None:intergenic
GTTGGTCCCAAGAAAACTCA+TGG 0.536292 tig0026926:-12926 None:intergenic
GTTAGATCTGGCCAAGCAGT+GGG 0.541656 tig0026926:+14159 Msa1431960:CDS
TCTTGCTCAGATTGAATCGC+GGG 0.544510 tig0026926:+12746 Msa1431960:CDS
AGAAGGGTTATGCTGCGAGC+AGG 0.547371 tig0026926:+14940 Msa1431960:intron
GCGCTCATCAAGGCCCTAAG+AGG 0.548089 tig0026926:-14406 None:intergenic
AACTCACAAAACACGTGTAA+CGG 0.548624 tig0026926:+11086 Msa1431960:five_prime_UTR
ATATACCCAAATGGCAACCT+GGG 0.548650 tig0026926:-14250 None:intergenic
GCGGGAAGCTTCATGATAGT+AGG 0.550760 tig0026926:+12764 Msa1431960:CDS
CTTGATGAGCGCCCTGCACG+AGG 0.550935 tig0026926:+14417 Msa1431960:CDS
AAATTATGCATTTCTAATGG+AGG 0.551504 tig0026926:+15337 Msa1431960:three_prime_UTR
AACGTTTCTCAAACGGAACG+TGG 0.551995 tig0026926:+11293 Msa1431960:CDS
TCCAACTTGATATACCCAAA+TGG 0.552417 tig0026926:-14259 None:intergenic
TGGGTATATCAAGTTGGATG+AGG 0.554171 tig0026926:+14264 Msa1431960:CDS
TTGTGGTTGCGGGATACGGT+CGG 0.555656 tig0026926:+11439 Msa1431960:CDS
TACCGTCAAGAAAGCGCCAC+CGG 0.558477 tig0026926:+11344 Msa1431960:CDS
TCCATTAGCCTTCTTCTGCA+AGG 0.561512 tig0026926:-11393 None:intergenic
TCGGGTTTCGGCGAAAGAAG+AGG 0.562272 tig0026926:+11550 Msa1431960:CDS
TCTCGTTTGAATATGTCATA+GGG 0.566934 tig0026926:-12615 None:intergenic
TGAAAAGCTTATAAAACAGA+TGG 0.567081 tig0026926:+14213 Msa1431960:CDS
CTCATCAAGGCCCTAAGAGG+TGG 0.569465 tig0026926:-14403 None:intergenic
GGTTTGCGAATGCTTATAGG+CGG 0.570509 tig0026926:+12640 Msa1431960:CDS
TTGCTCCTGCAGTGTGTCAA+AGG 0.578026 tig0026926:+12962 Msa1431960:CDS
AACCATTAAGAGACAGATAC+CGG 0.579125 tig0026926:-15038 None:intergenic
GAGCTATGGAAGGATAATTG+AGG 0.582471 tig0026926:+11517 Msa1431960:CDS
AACTCCGAGGTCACGTCCGG+TGG 0.582476 tig0026926:-11360 None:intergenic
ATGAAGTTGTTGATCATGCA+AGG 0.583096 tig0026926:+15224 Msa1431960:three_prime_UTR
CTAGAAACCTTGTTGCAATG+TGG 0.583412 tig0026926:-10853 Msa1431950:five_prime_UTR
TGTTAGATCTGGCCAAGCAG+TGG 0.583759 tig0026926:+14158 Msa1431960:CDS
AAAGCTTATAAAACAGATGG+TGG 0.586301 tig0026926:+14216 Msa1431960:CDS
TTTGCGAATGCTTATAGGCG+GGG 0.586700 tig0026926:+12642 Msa1431960:CDS
GATGTTGATATAAATAGGAA+GGG 0.593384 tig0026926:+15179 Msa1431960:three_prime_UTR
TATAGGCGGGGTTGTCAGGG+AGG 0.594149 tig0026926:+12654 Msa1431960:CDS
GGCGAAAGAAGAGGAAAGAT+GGG 0.603219 tig0026926:+11559 Msa1431960:CDS
CCATACCTTTGACACACTGC+AGG 0.605142 tig0026926:-12967 None:intergenic
TATACTAATGAATTCTGTCA+TGG 0.605433 tig0026926:-15000 None:intergenic
AGATATGCAGCATCATGAAG+AGG 0.611576 tig0026926:-14127 None:intergenic
GATTCAATCTGAGCAAGACC+CGG 0.614625 tig0026926:-12741 None:intergenic
AGCAACTCATCTGACCAAGT+TGG 0.616072 tig0026926:-12944 None:intergenic
ATGGAAATGAGAGCTATGGA+AGG 0.618281 tig0026926:+11507 Msa1431960:CDS
TCTTTCTTCATCAGTCTAAG+GGG 0.619065 tig0026926:+11127 Msa1431960:five_prime_UTR
TAATTGAGGAGAATTTGAGT+CGG 0.619319 tig0026926:+11531 Msa1431960:CDS
TTGACGGTAAAATGCACCGC+CGG 0.623040 tig0026926:-11330 None:intergenic
AGAAACCTTGTTGCAATGTG+GGG 0.624081 tig0026926:-10851 Msa1431950:five_prime_UTR
GAACAGCATTCTTACTGATG+AGG 0.626718 tig0026926:-11770 None:intergenic
TATCAGGACCTCTTTGGACA+GGG 0.628853 tig0026926:+14104 Msa1431960:CDS
TGGTGGATGAAAGTGACCCC+AGG 0.634109 tig0026926:+14233 Msa1431960:CDS
CGTGGTTTGGAATTCAACAC+CGG 0.634880 tig0026926:+11311 Msa1431960:CDS
ATGTTGATATAAATAGGAAG+GGG 0.634964 tig0026926:+15180 Msa1431960:three_prime_UTR
CAAGACAAAGACAACAACAT+CGG 0.636852 tig0026926:-11200 None:intergenic
GTGGGCCCCACATTGCAACA+AGG 0.644552 tig0026926:+10846 None:intergenic
TTGGTCCCAAGAAAACTCAT+GGG 0.648179 tig0026926:-12925 None:intergenic
TGAAGAGGCCCTGTCCAAAG+AGG 0.649312 tig0026926:-14112 None:intergenic
ATAAGCATAGTACGAAAACA+AGG 0.651215 tig0026926:-12704 None:intergenic
GTCTTGCTCAGATTGAATCG+CGG 0.662940 tig0026926:+12745 Msa1431960:CDS
TGACACCGAGAATGCTTCTG+CGG 0.667816 tig0026926:-11248 None:intergenic
ATTGGCCAATGCGACCAGTG+TGG 0.674765 tig0026926:+12897 Msa1431960:CDS
ATAATGCATGACCAGCTGAG+TGG 0.686765 tig0026926:-15273 None:intergenic
GGTTTGGAATTCAACACCGG+CGG 0.687116 tig0026926:+11314 Msa1431960:CDS
ACTCATGGGAATTTCCACAC+TGG 0.697108 tig0026926:-12911 None:intergenic
GAACATTAACAAATGCTCAG+AGG 0.703894 tig0026926:-15076 None:intergenic
TAAGCATAGTACGAAAACAA+GGG 0.714278 tig0026926:-12703 None:intergenic
GAAAGAAGAGGAAAGATGGG+TGG 0.716195 tig0026926:+11562 Msa1431960:CDS
GTTGCGGGATACGGTCGGCG+CGG 0.719001 tig0026926:+11444 Msa1431960:CDS
AGGAAGCTGCAAGAACTCCG+AGG 0.730697 tig0026926:-11373 None:intergenic
TATACCCAAATGGCAACCTG+GGG 0.735324 tig0026926:-14249 None:intergenic
TTAGATCTGGCCAAGCAGTG+GGG 0.745563 tig0026926:+14160 Msa1431960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTGACTATATTTTTTTTAT+TGG + tig0026926:12443-12462 Msa1431960:intron 15.0%
!!! CTATTTTAAAATTGTGTTAA+AGG + tig0026926:14534-14553 Msa1431960:intron 15.0%
!! TTATGTATGTATAAAAATGA+AGG + tig0026926:14757-14776 Msa1431960:intron 15.0%
!! TATGTATGTATAAAAATGAA+GGG + tig0026926:14758-14777 Msa1431960:intron 15.0%
!!! TTTTTGGATTTTCCTTTTAT+GGG - tig0026926:10946-10965 None:intergenic 20.0%
!!! TTTTTTGGATTTTCCTTTTA+TGG - tig0026926:10947-10966 None:intergenic 20.0%
!! GAAATTTGAAAAATTGAAGT+GGG - tig0026926:11009-11028 None:intergenic 20.0%
!! TGAAATTTGAAAAATTGAAG+TGG - tig0026926:11010-11029 None:intergenic 20.0%
!!! TAAAATGAGGGATATTTTTA+CGG - tig0026926:11063-11082 None:intergenic 20.0%
!! TTGTGAGTTAATTAAAATGA+GGG - tig0026926:11075-11094 None:intergenic 20.0%
!! TTTGTGAGTTAATTAAAATG+AGG - tig0026926:11076-11095 None:intergenic 20.0%
!!! AAAATTCAGTTACTTCTTTT+CGG + tig0026926:11167-11186 Msa1431960:five_prime_UTR 20.0%
!!! ATCAAACTCATTTTAAAACA+AGG - tig0026926:12243-12262 None:intergenic 20.0%
!!! TTTGATTTGTGTAGTTTAAT+AGG + tig0026926:12473-12492 Msa1431960:intron 20.0%
!!! GTTTTTTAGTGTTTATTTAC+TGG + tig0026926:13019-13038 Msa1431960:intron 20.0%
!! AACAGTTTAAATAGGAATTT+AGG - tig0026926:13138-13157 None:intergenic 20.0%
!! AAGTAAAAGAAAATTCAGTA+GGG - tig0026926:13726-13745 None:intergenic 20.0%
!! TGAAAAATATGAATCCAAAA+GGG - tig0026926:13875-13894 None:intergenic 20.0%
!! ATGAAAAATATGAATCCAAA+AGG - tig0026926:13876-13895 None:intergenic 20.0%
!!! AGAGTATTTTATACAATCAT+AGG - tig0026926:14046-14065 None:intergenic 20.0%
!!! ACTCTAAAAGTTCTTTAATT+TGG + tig0026926:14441-14460 Msa1431960:intron 20.0%
!! TAAAAGAATCAAAGTCATAA+TGG + tig0026926:14464-14483 Msa1431960:intron 20.0%
!! AATTGCATTTAGATATGATT+AGG + tig0026926:14672-14691 Msa1431960:intron 20.0%
!!! ATTTGTTTTAATTGCATTTG+CGG - tig0026926:14976-14995 None:intergenic 20.0%
!! TATTTAATCATTCATTTCTC+TGG + tig0026926:15293-15312 Msa1431960:three_prime_UTR 20.0%
!! TCTAAATTATGCATTTCTAA+TGG + tig0026926:15334-15353 Msa1431960:three_prime_UTR 20.0%
! ACCTTATATAATCCCATAAA+AGG + tig0026926:10931-10950 Msa1431960:five_prime_UTR 25.0%
!! TCCTTTTATGGGATTATATA+AGG - tig0026926:10935-10954 None:intergenic 25.0%
!!! TTCGTTCTTATCTTGTTTTT+TGG - tig0026926:10962-10981 None:intergenic 25.0%
!!! GCTATCATTACTTTGAAATT+TGG + tig0026926:11695-11714 Msa1431960:CDS 25.0%
!!! ATCATTACTTTGAAATTTGG+TGG + tig0026926:11698-11717 Msa1431960:CDS 25.0%
! TCTGATTTCATAATCTATCT+TGG - tig0026926:11996-12015 None:intergenic 25.0%
! AATAAGTTGTTTATCCAAAC+TGG + tig0026926:12129-12148 Msa1431960:intron 25.0%
! ATAAGTTGTTTATCCAAACT+GGG + tig0026926:12130-12149 Msa1431960:intron 25.0%
!!! TTTGTGTAGTGTAATTTGTT+TGG + tig0026926:12279-12298 Msa1431960:intron 25.0%
!!! TTGTATACTGTAATGGATTT+AGG + tig0026926:12519-12538 Msa1431960:intron 25.0%
! AATCAAATGAAAACAACACA+AGG - tig0026926:12816-12835 None:intergenic 25.0%
!!! TGTAGACATTATGGTTTTAT+TGG + tig0026926:12879-12898 Msa1431960:intron 25.0%
! ATTGCTAGATAATAACTTCT+CGG + tig0026926:13083-13102 Msa1431960:intron 25.0%
! AAGTAAAAGCAAATTCAGTA+GGG - tig0026926:13211-13230 None:intergenic 25.0%
! TTACCAAGTAAAAGCAAATT+CGG - tig0026926:13216-13235 None:intergenic 25.0%
! AAGTAAAAGCAAATTCAGTA+GGG - tig0026926:13211-13230 None:intergenic 25.0%
! AAGTAAAAGCAAATTCAGTA+GGG - tig0026926:13211-13230 None:intergenic 25.0%
! AAGTAAAAGCAAATTCAGTA+GGG - tig0026926:13211-13230 None:intergenic 25.0%
! CAAGTAAAAGAAAATTCAGT+AGG - tig0026926:13727-13746 None:intergenic 25.0%
!! CTACTGAATTTTCTTTTACT+TGG + tig0026926:13725-13744 Msa1431960:intron 25.0%
!! TTTTTCCAGAGTTCAAATTA+CGG + tig0026926:14006-14025 Msa1431960:intron 25.0%
!!! TCTATTTCTTTTCATTTTCC+AGG + tig0026926:14063-14082 Msa1431960:intron 25.0%
! TGAAAAGCTTATAAAACAGA+TGG + tig0026926:14213-14232 Msa1431960:CDS 25.0%
!! TTTATTTGTACTTTTCCAGA+TGG + tig0026926:14357-14376 Msa1431960:intron 25.0%
! AAATTGTGTTAAAGGATCAT+CGG + tig0026926:14542-14561 Msa1431960:intron 25.0%
! GATATAGATAAGAGAGTAAA+AGG + tig0026926:14577-14596 Msa1431960:intron 25.0%
! TTATACCATAATTGCTTTCA+TGG - tig0026926:14721-14740 None:intergenic 25.0%
! ATGACATGATATAGAACAAA+AGG - tig0026926:14789-14808 None:intergenic 25.0%
! ACTAAACATGGTAAACAAAT+CGG - tig0026926:14820-14839 None:intergenic 25.0%
! ATATCTCATCAAACTAAACA+TGG - tig0026926:14832-14851 None:intergenic 25.0%
! TATACTAATGAATTCTGTCA+TGG - tig0026926:15003-15022 None:intergenic 25.0%
! TGATGTTGATATAAATAGGA+AGG + tig0026926:15178-15197 Msa1431960:three_prime_UTR 25.0%
! GATGTTGATATAAATAGGAA+GGG + tig0026926:15179-15198 Msa1431960:three_prime_UTR 25.0%
! ATGTTGATATAAATAGGAAG+GGG + tig0026926:15180-15199 Msa1431960:three_prime_UTR 25.0%
! AAATTATGCATTTCTAATGG+AGG + tig0026926:15337-15356 Msa1431960:three_prime_UTR 25.0%
!! GGGATATTTTTACGGATTTA+AGG - tig0026926:11055-11074 None:intergenic 30.0%
TTTCTTTCTTCATCAGTCTA+AGG + tig0026926:11125-11144 Msa1431960:five_prime_UTR 30.0%
TTCTTTCTTCATCAGTCTAA+GGG + tig0026926:11126-11145 Msa1431960:five_prime_UTR 30.0%
! CAATGTTGTAATTTTGTTCC+TGG + tig0026926:11269-11288 Msa1431960:CDS 30.0%
!! GATTTTGTTGTAGCTAATGA+TGG + tig0026926:11488-11507 Msa1431960:CDS 30.0%
TAATTGAGGAGAATTTGAGT+CGG + tig0026926:11531-11550 Msa1431960:CDS 30.0%
!!! TTCATTGATGTTGACTCTTT+TGG + tig0026926:11647-11666 Msa1431960:CDS 30.0%
TGTGATGTAAATTACTGTAG+TGG + tig0026926:11825-11844 Msa1431960:intron 30.0%
AAACAGTCTCACAAAACATA+TGG - tig0026926:11907-11926 None:intergenic 30.0%
! TATGTTTTGTGAGACTGTTT+TGG + tig0026926:11907-11926 Msa1431960:intron 30.0%
TAAGTTGTTTATCCAAACTG+GGG + tig0026926:12131-12150 Msa1431960:intron 30.0%
ATATGACTTCAATTGTGTTG+TGG + tig0026926:12167-12186 Msa1431960:intron 30.0%
TCTGATTATGAGAATTGTGA+TGG + tig0026926:12302-12321 Msa1431960:intron 30.0%
!!! TGATGGAGTATTTTAATTGC+TGG + tig0026926:12319-12338 Msa1431960:intron 30.0%
!!! ACCACAAGGGTTTTAAAATA+CGG - tig0026926:12419-12438 None:intergenic 30.0%
TCTTGTGTTGTATACTGTAA+TGG + tig0026926:12512-12531 Msa1431960:intron 30.0%
!! TTTAGTTCTTTAGCTGCTTA+TGG + tig0026926:12580-12599 Msa1431960:intron 30.0%
TCTCGTTTGAATATGTCATA+GGG - tig0026926:12618-12637 None:intergenic 30.0%
ATCTCGTTTGAATATGTCAT+AGG - tig0026926:12619-12638 None:intergenic 30.0%
ATGACATATTCAAACGAGAT+TGG + tig0026926:12619-12638 Msa1431960:CDS 30.0%
TAAGCATAGTACGAAAACAA+GGG - tig0026926:12706-12725 None:intergenic 30.0%
ATAAGCATAGTACGAAAACA+AGG - tig0026926:12707-12726 None:intergenic 30.0%
! TTTTCGTACTATGCTTATCA+TGG + tig0026926:12709-12728 Msa1431960:CDS 30.0%
! AAATTCCCATGAGTTTTCTT+GGG + tig0026926:12920-12939 Msa1431960:CDS 30.0%
TTGTAAGTTGTAACTAGTGT+TGG + tig0026926:13052-13071 Msa1431960:intron 30.0%
CAATTAACATACTTGGAAGT+TGG - tig0026926:13183-13202 None:intergenic 30.0%
GGAAAAGCAATTAACATACT+TGG - tig0026926:13190-13209 None:intergenic 30.0%
CAAGTAAAAGCAAATTCAGT+AGG - tig0026926:13212-13231 None:intergenic 30.0%
!! CTACTGAATTTGCTTTTACT+TGG + tig0026926:13210-13229 Msa1431960:intron 30.0%
GGAAAAACAATTAACATGCT+TGG - tig0026926:13293-13312 None:intergenic 30.0%
AAGTAAAAGCAAATTCGGTA+GGG - tig0026926:13314-13333 None:intergenic 30.0%
CAAGTAAAAGCAAATTCAGT+AGG - tig0026926:13212-13231 None:intergenic 30.0%
!! CTACTGAATTTGCTTTTACT+TGG + tig0026926:13210-13229 Msa1431960:intron 30.0%
CAAGTAAAAGCAAATTCAGT+AGG - tig0026926:13212-13231 None:intergenic 30.0%
!! CTACTGAATTTGCTTTTACT+TGG + tig0026926:13210-13229 Msa1431960:intron 30.0%
GGAAAAACAATTAACATGCT+TGG - tig0026926:13293-13312 None:intergenic 30.0%
CAAGTAAAAGCAAATTCAGT+AGG - tig0026926:13212-13231 None:intergenic 30.0%
!! CTACTGAATTTGCTTTTACT+TGG + tig0026926:13210-13229 Msa1431960:intron 30.0%
GGAAAAACAATTAACATGCT+TGG - tig0026926:13293-13312 None:intergenic 30.0%
AAGTAAAAGCAGATTCAGTA+GGG - tig0026926:13829-13848 None:intergenic 30.0%
TATTTCCGTAATTTGAACTC+TGG - tig0026926:14014-14033 None:intergenic 30.0%
AAAGCTTATAAAACAGATGG+TGG + tig0026926:14216-14235 Msa1431960:CDS 30.0%
GTAAATACTGTTAGCTACTT+TGG + tig0026926:14311-14330 Msa1431960:intron 30.0%
TTGGTGAGAATATTGAGTTA+TGG + tig0026926:14330-14349 Msa1431960:intron 30.0%
TCTGCAATAAACAAAGTACA+AGG - tig0026926:14923-14942 None:intergenic 30.0%
! TGTACTTTGTTTATTGCAGA+AGG + tig0026926:14923-14942 Msa1431960:intron 30.0%
! GTACTTTGTTTATTGCAGAA+GGG + tig0026926:14924-14943 Msa1431960:intron 30.0%
TATAGCTAAAGAACTATTGC+CGG + tig0026926:15019-15038 Msa1431960:CDS 30.0%
! TTAATGTTCACATGAGTTGA+AGG + tig0026926:15090-15109 Msa1431960:three_prime_UTR 30.0%
! TAGTAATAGTGAAGCATTTG+AGG + tig0026926:15154-15173 Msa1431960:three_prime_UTR 30.0%
AGGCTGATGTTGATATAAAT+AGG + tig0026926:15174-15193 Msa1431960:three_prime_UTR 30.0%
TAGAAACCTTGTTGCAATGT+GGG - tig0026926:10855-10874 Msa1431950:five_prime_UTR 35.0%
AACTCACAAAACACGTGTAA+CGG + tig0026926:11086-11105 Msa1431960:five_prime_UTR 35.0%
TCTTTCTTCATCAGTCTAAG+GGG + tig0026926:11127-11146 Msa1431960:five_prime_UTR 35.0%
CAAGACAAAGACAACAACAT+CGG - tig0026926:11203-11222 None:intergenic 35.0%
! AATGATGGAAATGAGAGCTA+TGG + tig0026926:11503-11522 Msa1431960:CDS 35.0%
AATTGAGGAGAATTTGAGTC+GGG + tig0026926:11532-11551 Msa1431960:CDS 35.0%
!! GAAGTGATTCTTCGTTTTTG+AGG + tig0026926:11669-11688 Msa1431960:CDS 35.0%
! CTTTATGTCACTTCAACTGA+TGG + tig0026926:11725-11744 Msa1431960:CDS 35.0%
!!! GAGTATTTTAATTGCTGGCA+TGG + tig0026926:12324-12343 Msa1431960:intron 35.0%
!!! ACCGTATTTTAAAACCCTTG+TGG + tig0026926:12415-12434 Msa1431960:intron 35.0%
!! TGTAATGGATTTAGGACCTT+TGG + tig0026926:12527-12546 Msa1431960:intron 35.0%
!! ATTGGTTTGCGAATGCTTAT+AGG + tig0026926:12637-12656 Msa1431960:CDS 35.0%
ACGAAAACAAGGGAGTTATA+TGG - tig0026926:12696-12715 None:intergenic 35.0%
AATGTCTACAGCAATCACAA+TGG - tig0026926:12869-12888 None:intergenic 35.0%
TGTGATTGCTGTAGACATTA+TGG + tig0026926:12870-12889 Msa1431960:intron 35.0%
! GAAATTCCCATGAGTTTTCT+TGG + tig0026926:12919-12938 Msa1431960:CDS 35.0%
AACACTAAAAAACCTCGATG+AGG - tig0026926:13012-13031 None:intergenic 35.0%
CATGCAGCAACAGTTTAAAT+AGG - tig0026926:13146-13165 None:intergenic 35.0%
CAATTAACATGCTTGGAAGT+TGG - tig0026926:13286-13305 None:intergenic 35.0%
CAAGTAAAAGCAAATTCGGT+AGG - tig0026926:13315-13334 None:intergenic 35.0%
!! CTACCGAATTTGCTTTTACT+TGG + tig0026926:13313-13332 Msa1431960:intron 35.0%
GGAAAAGCAATTAACATGCT+TGG - tig0026926:13396-13415 None:intergenic 35.0%
GGAAAAGCAATTAACATGCT+TGG - tig0026926:13396-13415 None:intergenic 35.0%
CAATTAACATGCTTGGAAGT+TGG - tig0026926:13286-13305 None:intergenic 35.0%
GGAAAAGCAATTAACATGCT+TGG - tig0026926:13396-13415 None:intergenic 35.0%
CAAGTAAAAGCAGATTCAGT+AGG - tig0026926:13830-13849 None:intergenic 35.0%
!! CTACTGAATCTGCTTTTACT+TGG + tig0026926:13828-13847 Msa1431960:intron 35.0%
! AAGTTAACGAATCACCCTTT+TGG + tig0026926:13858-13877 Msa1431960:intron 35.0%
TCATGATGCTGCATATCTTA+CGG + tig0026926:14132-14151 Msa1431960:CDS 35.0%
TCTTACGGATATGTTAGATC+TGG + tig0026926:14147-14166 Msa1431960:CDS 35.0%
TCCAACTTGATATACCCAAA+TGG - tig0026926:14262-14281 None:intergenic 35.0%
!!! GTGGAGTATTGATTTTTGCA+CGG - tig0026926:14387-14406 None:intergenic 35.0%
AAATCAATACTCCACCTCTT+AGG + tig0026926:14392-14411 Msa1431960:CDS 35.0%
AATCAATACTCCACCTCTTA+GGG + tig0026926:14393-14412 Msa1431960:CDS 35.0%
CTCATATGCATCATGAAAAC+TGG + tig0026926:14606-14625 Msa1431960:intron 35.0%
CGGAGAAACTACTAAAGAAT+AGG + tig0026926:14634-14653 Msa1431960:intron 35.0%
CTATGCCATGAAAGCAATTA+TGG + tig0026926:14713-14732 Msa1431960:intron 35.0%
CAAAGTACAAGGTAAGTGAA+TGG - tig0026926:14912-14931 None:intergenic 35.0%
AACCATTAAGAGACAGATAC+CGG - tig0026926:15041-15060 None:intergenic 35.0%
GTATCTGTCTCTTAATGGTT+TGG + tig0026926:15041-15060 Msa1431960:exon 35.0%
GAACATTAACAAATGCTCAG+AGG - tig0026926:15079-15098 None:intergenic 35.0%
! AGGGGACATACTTCATATTT+TGG + tig0026926:15198-15217 Msa1431960:three_prime_UTR 35.0%
ATGAAGTTGTTGATCATGCA+AGG + tig0026926:15224-15243 Msa1431960:three_prime_UTR 35.0%
ATTTCTAATGGAGGCTTCTT+TGG + tig0026926:15346-15365 Msa1431960:three_prime_UTR 35.0%
AGAAACCTTGTTGCAATGTG+GGG - tig0026926:10854-10873 Msa1431950:five_prime_UTR 40.0%
CTAGAAACCTTGTTGCAATG+TGG - tig0026926:10856-10875 None:intergenic 40.0%
CGATGTTGTTGTCTTTGTCT+TGG + tig0026926:11201-11220 Msa1431960:exon 40.0%
TCCTGGAAACGTTTCTCAAA+CGG + tig0026926:11286-11305 Msa1431960:CDS 40.0%
ATGGAAATGAGAGCTATGGA+AGG + tig0026926:11507-11526 Msa1431960:CDS 40.0%
GAGCTATGGAAGGATAATTG+AGG + tig0026926:11517-11536 Msa1431960:CDS 40.0%
TCAACTGATGGTTTCTCTTC+TGG + tig0026926:11737-11756 Msa1431960:CDS 40.0%
GAACAGCATTCTTACTGATG+AGG - tig0026926:11773-11792 None:intergenic 40.0%
AGTCAATCTAAACATGCCCT+TGG - tig0026926:11865-11884 None:intergenic 40.0%
CATAACATTTAGCCCCAGTT+TGG - tig0026926:12146-12165 None:intergenic 40.0%
CAAACTGGGGCTAAATGTTA+TGG + tig0026926:12144-12163 Msa1431960:intron 40.0%
TGAAACAAATGCTGCAGATG+TGG + tig0026926:12357-12376 Msa1431960:intron 40.0%
ATAGTCACAGTACACCACAA+GGG - tig0026926:12432-12451 None:intergenic 40.0%
TATAGTCACAGTACACCACA+AGG - tig0026926:12433-12452 None:intergenic 40.0%
! ATGGATTTAGGACCTTTGGT+TGG + tig0026926:12531-12550 Msa1431960:intron 40.0%
AGTTACAAACCACCAACCAA+AGG - tig0026926:12546-12565 None:intergenic 40.0%
! CTTATCATGGACCTGTTTTC+CGG + tig0026926:12722-12741 Msa1431960:CDS 40.0%
! TTATCATGGACCTGTTTTCC+GGG + tig0026926:12723-12742 Msa1431960:CDS 40.0%
CAAGGCATGTCACAAACATA+AGG - tig0026926:12798-12817 None:intergenic 40.0%
TTGGTCCCAAGAAAACTCAT+GGG - tig0026926:12928-12947 None:intergenic 40.0%
! TGTTTGAGATTACCTCATCG+AGG + tig0026926:12997-13016 Msa1431960:intron 40.0%
AACTGTTGCTGCATGAAACA+TGG + tig0026926:13151-13170 Msa1431960:intron 40.0%
ATCATGTTTCATGCAGCAAC+AGG - tig0026926:13361-13380 None:intergenic 40.0%
! TTAAGGTATCAGGACCTCTT+TGG + tig0026926:14098-14117 Msa1431960:CDS 40.0%
AGATATGCAGCATCATGAAG+AGG - tig0026926:14130-14149 None:intergenic 40.0%
ATATACCCAAATGGCAACCT+GGG - tig0026926:14253-14272 None:intergenic 40.0%
GCCATTTGGGTATATCAAGT+TGG + tig0026926:14258-14277 Msa1431960:CDS 40.0%
!! TGGGTATATCAAGTTGGATG+AGG + tig0026926:14264-14283 Msa1431960:CDS 40.0%
CATCATGAAAACTGGCAGTT+CGG + tig0026926:14614-14633 Msa1431960:intron 40.0%
GTACAAGGTAAGTGAATGGT+TGG - tig0026926:14908-14927 None:intergenic 40.0%
! CTTAATGGTTTGGCCTCTAA+AGG + tig0026926:15051-15070 Msa1431960:exon 40.0%
! TCATAGAGTTGCTTTGTGAC+TGG - tig0026926:15391-15410 None:intergenic 40.0%
!! ATTCTCCGCAGAAGCATTCT+CGG + tig0026926:11243-11262 Msa1431960:CDS 45.0%
TCCGTTTGAGAAACGTTTCC+AGG - tig0026926:11290-11309 None:intergenic 45.0%
AACGTTTCTCAAACGGAACG+TGG + tig0026926:11293-11312 Msa1431960:CDS 45.0%
TTCTCAAACGGAACGTGGTT+TGG + tig0026926:11298-11317 Msa1431960:CDS 45.0%
! CGTGGTTTGGAATTCAACAC+CGG + tig0026926:11311-11330 Msa1431960:CDS 45.0%
TCCTTGCAGAAGAAGGCTAA+TGG + tig0026926:11392-11411 Msa1431960:CDS 45.0%
!! TCCATTAGCCTTCTTCTGCA+AGG - tig0026926:11396-11415 None:intergenic 45.0%
CGTGTTCTTGATGCACTTTG+TGG + tig0026926:11422-11441 Msa1431960:CDS 45.0%
CTTGATGCACTTTGTGGTTG+CGG + tig0026926:11428-11447 Msa1431960:CDS 45.0%
TTGATGCACTTTGTGGTTGC+GGG + tig0026926:11429-11448 Msa1431960:CDS 45.0%
GGAGAATTTGAGTCGGGTTT+CGG + tig0026926:11538-11557 Msa1431960:CDS 45.0%
GGCGAAAGAAGAGGAAAGAT+GGG + tig0026926:11559-11578 Msa1431960:CDS 45.0%
GAAAGAAGAGGAAAGATGGG+TGG + tig0026926:11562-11581 Msa1431960:CDS 45.0%
ACTGATGGTTTCTCTTCTGG+TGG + tig0026926:11740-11759 Msa1431960:CDS 45.0%
TGGTCACAGTCATCATACCA+AGG + tig0026926:11845-11864 Msa1431960:intron 45.0%
GGTCACAGTCATCATACCAA+GGG + tig0026926:11846-11865 Msa1431960:intron 45.0%
GAAACCCTGATGTTGTTGTC+TGG + tig0026926:12204-12223 Msa1431960:intron 45.0%
GCAACCAGACAACAACATCA+GGG - tig0026926:12211-12230 None:intergenic 45.0%
TGCAACCAGACAACAACATC+AGG - tig0026926:12212-12231 None:intergenic 45.0%
! GATTTAGGACCTTTGGTTGG+TGG + tig0026926:12534-12553 Msa1431960:intron 45.0%
GGTTTGCGAATGCTTATAGG+CGG + tig0026926:12640-12659 Msa1431960:CDS 45.0%
GTTTGCGAATGCTTATAGGC+GGG + tig0026926:12641-12660 Msa1431960:CDS 45.0%
TTTGCGAATGCTTATAGGCG+GGG + tig0026926:12642-12661 Msa1431960:CDS 45.0%
GATTCAATCTGAGCAAGACC+CGG - tig0026926:12744-12763 None:intergenic 45.0%
GTCTTGCTCAGATTGAATCG+CGG + tig0026926:12745-12764 Msa1431960:CDS 45.0%
TCTTGCTCAGATTGAATCGC+GGG + tig0026926:12746-12765 Msa1431960:CDS 45.0%
AATTTCCACACTGGTCGCAT+TGG - tig0026926:12905-12924 None:intergenic 45.0%
ACTCATGGGAATTTCCACAC+TGG - tig0026926:12914-12933 None:intergenic 45.0%
GTTGGTCCCAAGAAAACTCA+TGG - tig0026926:12929-12948 None:intergenic 45.0%
! GAGTTTTCTTGGGACCAACT+TGG + tig0026926:12930-12949 Msa1431960:CDS 45.0%
AGCAACTCATCTGACCAAGT+TGG - tig0026926:12947-12966 None:intergenic 45.0%
! AGTGTGTCAAAGGTATGGTG+TGG + tig0026926:12972-12991 Msa1431960:intron 45.0%
! TCAGACTCGCTTAAGGTATC+AGG + tig0026926:14088-14107 Msa1431960:CDS 45.0%
TATCAGGACCTCTTTGGACA+GGG + tig0026926:14104-14123 Msa1431960:CDS 45.0%
TATACCCAAATGGCAACCTG+GGG - tig0026926:14252-14271 None:intergenic 45.0%
GATATACCCAAATGGCAACC+TGG - tig0026926:14254-14273 None:intergenic 45.0%
!!! CTTTTAGAGTACCTCGTGCA+GGG - tig0026926:14431-14450 None:intergenic 45.0%
!!! ACTTTTAGAGTACCTCGTGC+AGG - tig0026926:14432-14451 None:intergenic 45.0%
TGCCGGTATCTGTCTCTTAA+TGG + tig0026926:15036-15055 Msa1431960:CDS 45.0%
ATGCTCAGAGGAACCTTTAG+AGG - tig0026926:15067-15086 None:intergenic 45.0%
CAGCTGAGTGGAATGTCAAA+AGG - tig0026926:15264-15283 None:intergenic 45.0%
! CTTTTGACATTCCACTCAGC+TGG + tig0026926:15262-15281 Msa1431960:three_prime_UTR 45.0%
ATAATGCATGACCAGCTGAG+TGG - tig0026926:15276-15295 None:intergenic 45.0%
GAATGCTTCTGCGGAGAATG+AGG - tig0026926:11242-11261 None:intergenic 50.0%
TGACACCGAGAATGCTTCTG+CGG - tig0026926:11251-11270 None:intergenic 50.0%
! GGTTTGGAATTCAACACCGG+CGG + tig0026926:11314-11333 Msa1431960:CDS 50.0%
TTGACGGTAAAATGCACCGC+CGG - tig0026926:11333-11352 None:intergenic 50.0%
TGCAGCTTCCTTGCAGAAGA+AGG + tig0026926:11385-11404 Msa1431960:CDS 50.0%
CACTTTGTGGTTGCGGGATA+CGG + tig0026926:11435-11454 Msa1431960:CDS 50.0%
CGGCGAAAGAAGAGGAAAGA+TGG + tig0026926:11558-11577 Msa1431960:CDS 50.0%
! GTTTCTCTTCTGGTGGACAC+AGG + tig0026926:11747-11766 Msa1431960:CDS 50.0%
GCGGGAAGCTTCATGATAGT+AGG + tig0026926:12764-12783 Msa1431960:CDS 50.0%
TTGCTCCTGCAGTGTGTCAA+AGG + tig0026926:12962-12981 Msa1431960:CDS 50.0%
CCATACCTTTGACACACTGC+AGG - tig0026926:12970-12989 None:intergenic 50.0%
CCTGCAGTGTGTCAAAGGTA+TGG + tig0026926:12967-12986 Msa1431960:intron 50.0%
! CCTTAAGCGAGTCTGAAACC+TGG - tig0026926:14084-14103 None:intergenic 50.0%
CCAGGTTTCAGACTCGCTTA+AGG + tig0026926:14081-14100 Msa1431960:intron 50.0%
GTATCAGGACCTCTTTGGAC+AGG + tig0026926:14103-14122 Msa1431960:CDS 50.0%
TGTTAGATCTGGCCAAGCAG+TGG + tig0026926:14158-14177 Msa1431960:CDS 50.0%
GTTAGATCTGGCCAAGCAGT+GGG + tig0026926:14159-14178 Msa1431960:CDS 50.0%
TTAGATCTGGCCAAGCAGTG+GGG + tig0026926:14160-14179 Msa1431960:CDS 50.0%
!! TGGGGATGGATTGGTTGTGA+TGG + tig0026926:14178-14197 Msa1431960:CDS 50.0%
! TTTTTGCACGGCTTGCCATC+TGG - tig0026926:14375-14394 None:intergenic 50.0%
!! TACCGTCAAGAAAGCGCCAC+CGG + tig0026926:11344-11363 Msa1431960:CDS 55.0%
AAGAACTCCGAGGTCACGTC+CGG - tig0026926:11366-11385 None:intergenic 55.0%
AGGAAGCTGCAAGAACTCCG+AGG - tig0026926:11376-11395 None:intergenic 55.0%
TTGTGGTTGCGGGATACGGT+CGG + tig0026926:11439-11458 Msa1431960:CDS 55.0%
TCGGGTTTCGGCGAAAGAAG+AGG + tig0026926:11550-11569 Msa1431960:CDS 55.0%
TGCTTATAGGCGGGGTTGTC+AGG + tig0026926:12650-12669 Msa1431960:CDS 55.0%
GCTTATAGGCGGGGTTGTCA+GGG + tig0026926:12651-12670 Msa1431960:CDS 55.0%
TGTCAGGGAGGCTGCATTGT+TGG + tig0026926:12666-12685 Msa1431960:CDS 55.0%
GTCAGGGAGGCTGCATTGTT+GGG + tig0026926:12667-12686 Msa1431960:CDS 55.0%
TCAGGGAGGCTGCATTGTTG+GGG + tig0026926:12668-12687 Msa1431960:CDS 55.0%
CTGAGCAAGACCCGGAAAAC+AGG - tig0026926:12736-12755 None:intergenic 55.0%
ATTGGCCAATGCGACCAGTG+TGG + tig0026926:12897-12916 Msa1431960:CDS 55.0%
TGAAGAGGCCCTGTCCAAAG+AGG - tig0026926:14115-14134 None:intergenic 55.0%
ACCAATCCATCCCCACTGCT+TGG - tig0026926:14173-14192 None:intergenic 55.0%
! TGGTGGATGAAAGTGACCCC+AGG + tig0026926:14233-14252 Msa1431960:CDS 55.0%
AGTGACCCCAGGTTGCCATT+TGG + tig0026926:14244-14263 Msa1431960:CDS 55.0%
! GTGACCCCAGGTTGCCATTT+GGG + tig0026926:14245-14264 Msa1431960:CDS 55.0%
CTCATCAAGGCCCTAAGAGG+TGG - tig0026926:14406-14425 None:intergenic 55.0%
AGAAGGGTTATGCTGCGAGC+AGG + tig0026926:14940-14959 Msa1431960:intron 55.0%
GTCCGGTGGCGCTTTCTTGA+CGG - tig0026926:11349-11368 None:intergenic 60.0%
ACGGTCGGCGCGGTATTTGA+AGG + tig0026926:11454-11473 Msa1431960:CDS 60.0%
TATAGGCGGGGTTGTCAGGG+AGG + tig0026926:12654-12673 Msa1431960:CDS 60.0%
ATCTGGCCAAGCAGTGGGGA+TGG + tig0026926:14164-14183 Msa1431960:CDS 60.0%
GCCAAGCAGTGGGGATGGAT+TGG + tig0026926:14169-14188 Msa1431960:CDS 60.0%
GCGCTCATCAAGGCCCTAAG+AGG - tig0026926:14409-14428 None:intergenic 60.0%
AACTCCGAGGTCACGTCCGG+TGG - tig0026926:11363-11382 None:intergenic 65.0%
! CTCGTGCAGGGCGCTCATCA+AGG - tig0026926:14419-14438 None:intergenic 65.0%
CTTGATGAGCGCCCTGCACG+AGG + tig0026926:14417-14436 Msa1431960:CDS 65.0%
AGCGCCACCGGACGTGACCT+CGG + tig0026926:11356-11375 Msa1431960:CDS 70.0%
GTTGCGGGATACGGTCGGCG+CGG + tig0026926:11444-11463 Msa1431960:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0026926 gene 10850 15433 10850 ID=Msa1431960;Name=Msa1431960
tig0026926 mRNA 10850 15433 10850 ID=Msa1431960-mRNA-1;Parent=Msa1431960;Name=Msa1431960-mRNA-1;_AED=0.04;_eAED=0.04;_QI=353|1|1|1|1|1|6|378|417
tig0026926 exon 10850 11777 10850 ID=Msa1431960-mRNA-1:exon:7790;Parent=Msa1431960-mRNA-1
tig0026926 exon 12585 12785 12585 ID=Msa1431960-mRNA-1:exon:7791;Parent=Msa1431960-mRNA-1
tig0026926 exon 12884 12983 12884 ID=Msa1431960-mRNA-1:exon:7792;Parent=Msa1431960-mRNA-1
tig0026926 exon 14085 14285 14085 ID=Msa1431960-mRNA-1:exon:7793;Parent=Msa1431960-mRNA-1
tig0026926 exon 14376 14438 14376 ID=Msa1431960-mRNA-1:exon:7794;Parent=Msa1431960-mRNA-1
tig0026926 exon 14942 15433 14942 ID=Msa1431960-mRNA-1:exon:7795;Parent=Msa1431960-mRNA-1
tig0026926 five_prime_UTR 10850 11202 10850 ID=Msa1431960-mRNA-1:five_prime_utr;Parent=Msa1431960-mRNA-1
tig0026926 CDS 11203 11777 11203 ID=Msa1431960-mRNA-1:cds;Parent=Msa1431960-mRNA-1
tig0026926 CDS 12585 12785 12585 ID=Msa1431960-mRNA-1:cds;Parent=Msa1431960-mRNA-1
tig0026926 CDS 12884 12983 12884 ID=Msa1431960-mRNA-1:cds;Parent=Msa1431960-mRNA-1
tig0026926 CDS 14085 14285 14085 ID=Msa1431960-mRNA-1:cds;Parent=Msa1431960-mRNA-1
tig0026926 CDS 14376 14438 14376 ID=Msa1431960-mRNA-1:cds;Parent=Msa1431960-mRNA-1
tig0026926 CDS 14942 15055 14942 ID=Msa1431960-mRNA-1:cds;Parent=Msa1431960-mRNA-1
tig0026926 three_prime_UTR 15056 15433 15056 ID=Msa1431960-mRNA-1:three_prime_utr;Parent=Msa1431960-mRNA-1
Gene Sequence

>Msa1431960

ATGTTGTTGTCTTTGTCTTGGTCTTTCACTTTTTCTCCTCATTCTCCGCAGAAGCATTCTCGGTGTCAATGTTGTAATTTTGTTCCTGGAAACGTTTCTCAAACGGAACGTGGTTTGGAATTCAACACCGGCGGTGCATTTTACCGTCAAGAAAGCGCCACCGGACGTGACCTCGGAGTTCTTGCAGCTTCCTTGCAGAAGAAGGCTAATGGAAGCTTGCGTGTTCTTGATGCACTTTGTGGTTGCGGGATACGGTCGGCGCGGTATTTGAAGGAAGCTGAAGCTGATTTTGTTGTAGCTAATGATGGAAATGAGAGCTATGGAAGGATAATTGAGGAGAATTTGAGTCGGGTTTCGGCGAAAGAAGAGGAAAGATGGGTGGTTACTCATTTAGAAGCTAATAGAGTTATGACTGATTATTACATGCAGAAGAGTTTGTTTGATTTCATTGATGTTGACTCTTTTGGAAGTGATTCTTCGTTTTTGAGGTCTGCTATCATTACTTTGAAATTTGGTGGTCTGCTTTATGTCACTTCAACTGATGGTTTCTCTTCTGGTGGACACAGGCCTCATCATTCTTTAGCTGCTTATGGAGCTTATGTGCGCCCTATGACATATTCAAACGAGATTGGTTTGCGAATGCTTATAGGCGGGGTTGTCAGGGAGGCTGCATTGTTGGGGTACCATATAACTCCCTTGTTTTCGTACTATGCTTATCATGGACCTGTTTTCCGGGTCTTGCTCAGATTGAATCGCGGGAAGCTTCATGATAGTAGACATTATGGTTTTATTGGCCAATGCGACCAGTGTGGAAATTCCCATGAGTTTTCTTGGGACCAACTTGGTCAGATGAGTTGCTCCTGCAGTGTGTCAAAGGTTTCAGACTCGCTTAAGGTATCAGGACCTCTTTGGACAGGGCCTCTTCATGATGCTGCATATCTTACGGATATGTTAGATCTGGCCAAGCAGTGGGGATGGATTGGTTGTGATGGTAAAGACAGTCTTGAAAAGCTTATAAAACAGATGGTGGATGAAAGTGACCCCAGGTTGCCATTTGGGTATATCAAGTTGGATGAGATGGCAAGCCGTGCAAAAATCAATACTCCACCTCTTAGGGCCTTGATGAGCGCCCTGCACGAGAAGGGTTATGCTGCGAGCAGGTCTCACATAACCGCAAATGCAATTAAAACAAATTGCTCCATGACAGAATTCATTAGTATAGCTAAAGAACTATTGCCGGTATCTGTCTCTTAA

Protein sequence

>Msa1431960

MLLSLSWSFTFSPHSPQKHSRCQCCNFVPGNVSQTERGLEFNTGGAFYRQESATGRDLGVLAASLQKKANGSLRVLDALCGCGIRSARYLKEAEADFVVANDGNESYGRIIEENLSRVSAKEEERWVVTHLEANRVMTDYYMQKSLFDFIDVDSFGSDSSFLRSAIITLKFGGLLYVTSTDGFSSGGHRPHHSLAAYGAYVRPMTYSNEIGLRMLIGGVVREAALLGYHITPLFSYYAYHGPVFRVLLRLNRGKLHDSRHYGFIGQCDQCGNSHEFSWDQLGQMSCSCSVSKVSDSLKVSGPLWTGPLHDAAYLTDMLDLAKQWGWIGCDGKDSLEKLIKQMVDESDPRLPFGYIKLDEMASRAKINTPPLRALMSALHEKGYAASRSHITANAIKTNCSMTEFISIAKELLPVSVS*