Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1445950 | sp|Q9SCV3|BGAL9_ARATH | 73.288 | 438 | 83 | 2 | 49 | 486 | 30 | 433 | 0.0 | 691 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1445950 | G7LHU5 | 91.770 | 486 | 8 | 3 | 1 | 486 | 1 | 454 | 0.0 | 914 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1365700 | Msa1445950 | 0.805030 | 1.625276e-49 | -8.615850e-47 |
Msa1410130 | Msa1445950 | 0.800785 | 1.224298e-48 | -8.615850e-47 |
Msa0460400 | Msa1445950 | 0.805089 | 1.579590e-49 | -8.615850e-47 |
Msa1101080 | Msa1445950 | 0.800701 | 1.273817e-48 | -8.615850e-47 |
Msa0289280 | Msa1445950 | 0.801773 | 7.687276e-49 | -8.615850e-47 |
Msa1191890 | Msa1445950 | 0.811333 | 7.376950e-51 | -8.615850e-47 |
Msa0528020 | Msa1445950 | 0.807492 | 4.923001e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1445950 | MtrunA17_Chr8g0378221 | 91.770 | 486 | 8 | 3 | 1 | 486 | 1 | 454 | 0.0 | 914 |
Msa1445950 | MtrunA17_Chr2g0326481 | 60.317 | 441 | 131 | 4 | 51 | 487 | 12 | 412 | 0.0 | 563 |
Msa1445950 | MtrunA17_Chr4g0029301 | 61.111 | 432 | 127 | 4 | 56 | 487 | 25 | 415 | 0.0 | 553 |
Msa1445950 | MtrunA17_Chr8g0342001 | 60.093 | 431 | 133 | 3 | 56 | 486 | 24 | 415 | 0.0 | 551 |
Msa1445950 | MtrunA17_Chr2g0326491 | 54.772 | 482 | 133 | 5 | 51 | 487 | 12 | 453 | 0.0 | 543 |
Msa1445950 | MtrunA17_Chr2g0330291 | 58.237 | 431 | 141 | 3 | 56 | 486 | 27 | 418 | 0.0 | 536 |
Msa1445950 | MtrunA17_Chr8g0372421 | 58.661 | 433 | 140 | 3 | 56 | 488 | 27 | 420 | 0.0 | 532 |
Msa1445950 | MtrunA17_Chr1g0152571 | 59.122 | 433 | 137 | 4 | 56 | 487 | 30 | 423 | 0.0 | 529 |
Msa1445950 | MtrunA17_Chr2g0299161 | 54.812 | 478 | 156 | 4 | 15 | 492 | 7 | 424 | 0.0 | 526 |
Msa1445950 | MtrunA17_Chr1g0155701 | 58.140 | 430 | 140 | 3 | 57 | 486 | 29 | 418 | 2.64e-180 | 525 |
Msa1445950 | MtrunA17_Chr3g0142001 | 56.744 | 430 | 147 | 3 | 57 | 486 | 28 | 418 | 2.60e-174 | 509 |
Msa1445950 | MtrunA17_Chr5g0404841 | 56.120 | 433 | 151 | 3 | 56 | 488 | 25 | 418 | 4.07e-174 | 512 |
Msa1445950 | MtrunA17_Chr3g0130711 | 56.713 | 432 | 148 | 3 | 56 | 487 | 26 | 418 | 2.28e-167 | 491 |
Msa1445950 | MtrunA17_Chr2g0301001 | 53.241 | 432 | 162 | 3 | 57 | 488 | 27 | 418 | 9.30e-162 | 480 |
Msa1445950 | MtrunA17_Chr5g0406921 | 52.982 | 436 | 159 | 5 | 57 | 487 | 28 | 422 | 3.58e-159 | 473 |
Msa1445950 | MtrunA17_Chr3g0077531 | 51.724 | 435 | 163 | 5 | 57 | 486 | 26 | 418 | 3.58e-156 | 462 |
Msa1445950 | MtrunA17_Chr5g0408371 | 51.954 | 435 | 164 | 4 | 57 | 487 | 28 | 421 | 6.57e-154 | 459 |
Msa1445950 | MtrunA17_Chr3g0130721 | 48.922 | 464 | 187 | 7 | 26 | 487 | 4 | 419 | 3.19e-151 | 449 |
Msa1445950 | MtrunA17_Chr4g0037031 | 49.654 | 433 | 177 | 6 | 57 | 487 | 36 | 429 | 1.49e-144 | 436 |
Msa1445950 | MtrunA17_Chr3g0145581 | 46.651 | 433 | 190 | 6 | 56 | 486 | 34 | 427 | 1.07e-140 | 426 |
Msa1445950 | MtrunA17_Chr2g0326441 | 63.455 | 301 | 81 | 2 | 51 | 347 | 12 | 287 | 5.71e-140 | 406 |
Msa1445950 | MtrunA17_Chr3g0124931 | 48.506 | 435 | 180 | 7 | 56 | 488 | 25 | 417 | 1.74e-139 | 418 |
Msa1445950 | MtrunA17_Chr5g0405781 | 39.234 | 209 | 98 | 3 | 213 | 416 | 31 | 215 | 9.52e-41 | 150 |
Msa1445950 | MtrunA17_Chr4g0071291 | 51.969 | 127 | 29 | 1 | 52 | 178 | 17 | 111 | 5.98e-37 | 133 |
Msa1445950 | MtrunA17_Chr8g0372581 | 37.288 | 177 | 63 | 4 | 168 | 343 | 1 | 130 | 5.64e-29 | 111 |
Msa1445950 | MtrunA17_Chr2g0330191 | 28.909 | 339 | 203 | 9 | 67 | 388 | 64 | 381 | 3.77e-28 | 119 |
Msa1445950 | MtrunA17_Chr2g0326451 | 49.091 | 110 | 41 | 2 | 378 | 487 | 25 | 119 | 4.70e-25 | 108 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1445950 | AT2G32810.1 | 73.288 | 438 | 83 | 2 | 49 | 486 | 30 | 433 | 0.0 | 691 |
Msa1445950 | AT2G32810.2 | 73.288 | 438 | 83 | 2 | 49 | 486 | 30 | 433 | 0.0 | 689 |
Msa1445950 | AT2G28470.1 | 63.194 | 432 | 120 | 3 | 56 | 487 | 31 | 423 | 0.0 | 585 |
Msa1445950 | AT2G28470.3 | 63.194 | 432 | 120 | 3 | 56 | 487 | 31 | 423 | 0.0 | 585 |
Msa1445950 | AT2G28470.2 | 63.194 | 432 | 120 | 3 | 56 | 487 | 25 | 417 | 0.0 | 585 |
Msa1445950 | AT2G28470.4 | 63.194 | 432 | 120 | 3 | 56 | 487 | 25 | 417 | 0.0 | 585 |
Msa1445950 | AT2G28470.5 | 63.194 | 432 | 120 | 3 | 56 | 487 | 31 | 423 | 0.0 | 585 |
Msa1445950 | AT3G52840.2 | 60.930 | 430 | 127 | 4 | 57 | 486 | 83 | 471 | 0.0 | 547 |
Msa1445950 | AT3G52840.1 | 60.930 | 430 | 127 | 4 | 57 | 486 | 29 | 417 | 0.0 | 546 |
Msa1445950 | AT3G13750.1 | 59.861 | 431 | 134 | 3 | 56 | 486 | 33 | 424 | 0.0 | 544 |
Msa1445950 | AT4G26140.8 | 58.796 | 432 | 137 | 4 | 57 | 488 | 29 | 419 | 0.0 | 530 |
Msa1445950 | AT4G26140.3 | 58.124 | 437 | 142 | 4 | 57 | 493 | 29 | 424 | 0.0 | 529 |
Msa1445950 | AT4G26140.4 | 58.796 | 432 | 137 | 4 | 57 | 488 | 29 | 419 | 0.0 | 529 |
Msa1445950 | AT4G26140.2 | 58.124 | 437 | 142 | 4 | 57 | 493 | 29 | 424 | 0.0 | 529 |
Msa1445950 | AT4G26140.5 | 58.796 | 432 | 137 | 4 | 57 | 488 | 29 | 419 | 0.0 | 529 |
Msa1445950 | AT4G26140.6 | 58.796 | 432 | 137 | 4 | 57 | 488 | 29 | 419 | 0.0 | 528 |
Msa1445950 | AT5G56870.1 | 55.672 | 476 | 153 | 6 | 17 | 492 | 6 | 423 | 0.0 | 528 |
Msa1445950 | AT4G26140.9 | 58.796 | 432 | 137 | 4 | 57 | 488 | 29 | 419 | 0.0 | 527 |
Msa1445950 | AT4G26140.7 | 58.796 | 432 | 137 | 4 | 57 | 488 | 29 | 419 | 0.0 | 527 |
Msa1445950 | AT4G26140.1 | 58.796 | 432 | 137 | 4 | 57 | 488 | 29 | 419 | 0.0 | 527 |
Msa1445950 | AT4G36360.1 | 58.333 | 432 | 141 | 3 | 57 | 488 | 33 | 425 | 8.14e-180 | 527 |
Msa1445950 | AT4G36360.2 | 58.333 | 432 | 141 | 3 | 57 | 488 | 33 | 425 | 1.06e-179 | 527 |
Msa1445950 | AT1G45130.1 | 56.481 | 432 | 149 | 3 | 56 | 487 | 30 | 422 | 4.41e-174 | 508 |
Msa1445950 | AT1G31740.1 | 49.679 | 467 | 180 | 5 | 21 | 487 | 1 | 412 | 6.35e-166 | 489 |
Msa1445950 | AT5G63810.1 | 50.213 | 470 | 182 | 4 | 18 | 487 | 6 | 423 | 2.01e-165 | 486 |
Msa1445950 | AT5G20710.1 | 51.740 | 431 | 168 | 4 | 57 | 487 | 28 | 418 | 8.11e-160 | 475 |
Msa1445950 | AT5G63800.1 | 47.845 | 464 | 191 | 8 | 27 | 488 | 10 | 424 | 7.43e-144 | 431 |
Msa1445950 | AT1G77410.3 | 51.152 | 434 | 174 | 7 | 56 | 487 | 24 | 421 | 7.52e-144 | 434 |
Msa1445950 | AT1G77410.1 | 50.691 | 434 | 171 | 7 | 56 | 487 | 24 | 416 | 5.61e-142 | 429 |
Msa1445950 | AT4G35010.1 | 47.685 | 432 | 185 | 6 | 57 | 486 | 41 | 433 | 2.22e-137 | 418 |
Msa1445950 | AT2G16730.1 | 47.685 | 432 | 185 | 6 | 57 | 486 | 44 | 436 | 8.49e-137 | 416 |
Msa1445950 | AT1G45130.2 | 54.595 | 370 | 129 | 3 | 118 | 487 | 13 | 343 | 2.79e-136 | 409 |
Msa1445950 | AT4G38590.1 | 46.517 | 402 | 174 | 6 | 87 | 486 | 1 | 363 | 2.09e-122 | 378 |
Msa1445950 | AT4G38590.2 | 46.517 | 402 | 174 | 6 | 87 | 486 | 69 | 431 | 1.75e-120 | 379 |
Msa1445950 | AT1G77410.2 | 47.748 | 333 | 131 | 7 | 157 | 487 | 19 | 310 | 3.13e-90 | 291 |
Msa1445950 | AT1G77410.4 | 47.748 | 333 | 131 | 7 | 157 | 487 | 19 | 310 | 3.13e-90 | 291 |
Msa1445950 | AT5G20710.2 | 50.877 | 228 | 97 | 3 | 260 | 487 | 1 | 213 | 3.09e-74 | 247 |
Msa1445950 | AT1G72990.3 | 32.102 | 352 | 175 | 10 | 67 | 388 | 18 | 335 | 7.64e-40 | 153 |
Msa1445950 | AT1G72990.1 | 31.742 | 356 | 171 | 11 | 67 | 388 | 73 | 390 | 9.28e-40 | 153 |
Msa1445950 | AT1G72990.4 | 31.742 | 356 | 171 | 11 | 67 | 388 | 73 | 390 | 9.28e-40 | 153 |
Msa1445950 | AT1G72990.2 | 30.435 | 345 | 168 | 11 | 78 | 388 | 22 | 328 | 7.33e-34 | 135 |
Msa1445950 | AT2G04062.1 | 34.500 | 200 | 81 | 3 | 57 | 254 | 7 | 158 | 4.23e-33 | 124 |
Msa1445950 | AT2G04060.1 | 43.165 | 139 | 60 | 4 | 347 | 485 | 23 | 142 | 1.97e-25 | 109 |
Find 115 sgRNAs with CRISPR-Local
Find 432 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATCAGATTGAGAATGAATA+TGG | 0.177764 | tig0031250:+41279 | Msa1445950:CDS |
TACCTTGAAAGGTGCATTAT+TGG | 0.186989 | tig0031250:-40320 | None:intergenic |
TAATCGAAACTTATGTGTTT+TGG | 0.230724 | tig0031250:+39148 | Msa1445950:CDS |
GTCTGCTGAATGAGCCAAAA+TGG | 0.242915 | tig0031250:+43820 | Msa1445950:CDS |
CTAACCTGTAACAAAATTAT+TGG | 0.243119 | tig0031250:-40713 | None:intergenic |
TGTTCTTCTTGTTCCTGCTT+TGG | 0.258497 | tig0031250:-38302 | None:intergenic |
TCTTTCAAGTGACCCCATTT+TGG | 0.261482 | tig0031250:-43834 | None:intergenic |
TCTTGTTCCTGCTTTGGAAT+TGG | 0.269319 | tig0031250:-38296 | None:intergenic |
AAGGCAAAGAGTACGTTAAA+TGG | 0.276900 | tig0031250:+41328 | Msa1445950:CDS |
TTCACCAACATATATAAAAC+TGG | 0.287805 | tig0031250:+43905 | Msa1445950:CDS |
AATGGGCACCAGCCTGTTAA+AGG | 0.316692 | tig0031250:+39171 | Msa1445950:CDS |
ATTGGTTTGTTACGAGAGTT+TGG | 0.321035 | tig0031250:-41677 | None:intergenic |
CTATGTTTGCAGTGGTTTCC+CGG | 0.334190 | tig0031250:+40261 | Msa1445950:intron |
ATGTTGACCTGTCCTTTAAC+AGG | 0.339552 | tig0031250:-39183 | None:intergenic |
AAGTCTTCAAAATTATTATA+TGG | 0.341324 | tig0031250:+42330 | Msa1445950:CDS |
CTCTATTTCTTTCTCCGTAT+AGG | 0.370379 | tig0031250:+39373 | Msa1445950:CDS |
TTGGCCTTTGCTATGAGATC+AGG | 0.379379 | tig0031250:-39108 | None:intergenic |
TACATCTACACCACCTTCCT+TGG | 0.385940 | tig0031250:-39127 | None:intergenic |
AACCAATAATGCACCTTTCA+AGG | 0.392881 | tig0031250:+40318 | Msa1445950:CDS |
TACGTACCATACTCATCAAT+TGG | 0.403471 | tig0031250:-43692 | None:intergenic |
CACATGCATAAGGGCCTATA+CGG | 0.403759 | tig0031250:-39387 | None:intergenic |
ACAATATCATATGGAGCATC+AGG | 0.411243 | tig0031250:-41408 | None:intergenic |
TGAGCATATTGCCAGATTGC+AGG | 0.415840 | tig0031250:+44515 | Msa1445950:CDS |
GTCTTGGTGCTGGTGTTCCA+TGG | 0.417953 | tig0031250:+41370 | Msa1445950:CDS |
TTCCACTCGGCACATGCATA+AGG | 0.425555 | tig0031250:-39397 | None:intergenic |
GGTGTGGTTGCGTGATATCC+CGG | 0.431170 | tig0031250:+40282 | Msa1445950:CDS |
CTGCTAAGGTTAGTTTATGC+AGG | 0.433128 | tig0031250:+44554 | Msa1445950:CDS |
AAAATCGCACTCCTGCAATC+TGG | 0.440054 | tig0031250:-44526 | None:intergenic |
GCATGTGCCGAGTGGAACTT+CGG | 0.441241 | tig0031250:+39403 | Msa1445950:CDS |
AAATACCTCGGGAGTGGCGC+GGG | 0.448139 | tig0031250:-38512 | None:intergenic |
GCAGCAACTGTGACCTTTCG+TGG | 0.450409 | tig0031250:+44463 | Msa1445950:CDS |
TCTGCTGAATGAGCCAAAAT+GGG | 0.455622 | tig0031250:+43821 | Msa1445950:CDS |
ATCAGATTGAGAATGAATAT+GGG | 0.462410 | tig0031250:+41280 | Msa1445950:CDS |
GCTAGCATGGCTCTAAGTCT+TGG | 0.465010 | tig0031250:+41354 | Msa1445950:CDS |
GATGCTCCAATTGATGAGTA+TGG | 0.465096 | tig0031250:+43686 | Msa1445950:CDS |
AGAGACACTGATAGATTACT+AGG | 0.467949 | tig0031250:-44640 | None:intergenic |
AATGAAGCGGTTTGTTTCCA+AGG | 0.470430 | tig0031250:+40643 | Msa1445950:CDS |
TGCTTTACGTTCATCAATGT+TGG | 0.474827 | tig0031250:-44443 | None:intergenic |
CATGTGCCGAGTGGAACTTC+GGG | 0.475412 | tig0031250:+39404 | Msa1445950:CDS |
CGTTAAATGGGCAGCTAGCA+TGG | 0.475579 | tig0031250:+41341 | Msa1445950:CDS |
GGGAACCTTGAGAGCTCCTA+TGG | 0.477152 | tig0031250:+41300 | Msa1445950:CDS |
CAAAGAATTTCTACCTTGAA+AGG | 0.479778 | tig0031250:-40331 | None:intergenic |
ATATAGTTTACAATATCATA+TGG | 0.480192 | tig0031250:-41417 | None:intergenic |
ATCATAACTTGTAATTTGCA+AGG | 0.483785 | tig0031250:-43660 | None:intergenic |
GCAAATGCAAGGTCTTCAAC+AGG | 0.493592 | tig0031250:-42280 | None:intergenic |
GGATATCACGCAACCACACC+GGG | 0.496105 | tig0031250:-40279 | None:intergenic |
AGGCAAAGAGTACGTTAAAT+GGG | 0.496923 | tig0031250:+41329 | Msa1445950:CDS |
TCCACTCGGCACATGCATAA+GGG | 0.502114 | tig0031250:-39396 | None:intergenic |
TGATCGTAGGTGACGTTGAA+CGG | 0.502176 | tig0031250:-38430 | None:intergenic |
GAGAGCTCCTATGGCAATGA+AGG | 0.502841 | tig0031250:+41309 | Msa1445950:CDS |
GCTTTGTGAGCCTGCTCTAG+TGG | 0.503955 | tig0031250:+43875 | Msa1445950:CDS |
TATAAAACTGGGTTCAAAGC+AGG | 0.504835 | tig0031250:+43917 | Msa1445950:CDS |
AATTGTTCCAATTCCAAAGC+AGG | 0.511388 | tig0031250:+38289 | Msa1445950:CDS |
CTCTTTGCCTTCATTGCCAT+AGG | 0.520237 | tig0031250:-41316 | None:intergenic |
GAATCAGCAGCCACTAGAGC+AGG | 0.521784 | tig0031250:-43885 | None:intergenic |
TGACCTGTCCTTTAACAGGC+TGG | 0.531131 | tig0031250:-39179 | None:intergenic |
GCAAAGTTAGTTGCATCCAA+TGG | 0.531553 | tig0031250:+39349 | Msa1445950:CDS |
GAGAAAGAAATAGAGTCCAT+TGG | 0.533588 | tig0031250:-39365 | None:intergenic |
TACGTTCATCAATGTTGGCA+AGG | 0.541281 | tig0031250:-44438 | None:intergenic |
TCTTGGTGCTGGTGTTCCAT+GGG | 0.542465 | tig0031250:+41371 | Msa1445950:CDS |
GGACAGAGAACTGGGATGGA+TGG | 0.542768 | tig0031250:+41705 | Msa1445950:CDS |
GTGTGGTTGCGTGATATCCC+GGG | 0.549090 | tig0031250:+40283 | Msa1445950:CDS |
CGTCGCATGCTCATCTCCGC+CGG | 0.550769 | tig0031250:+38478 | Msa1445950:CDS |
TTTGAAGACTTCCTCCACGC+TGG | 0.552842 | tig0031250:-42318 | None:intergenic |
TTGGTTCGAAATTCAATACC+CGG | 0.555870 | tig0031250:-40301 | None:intergenic |
CATTGCCATAGGAGCTCTCA+AGG | 0.556040 | tig0031250:-41305 | None:intergenic |
TCATAACTTGTAATTTGCAA+GGG | 0.559024 | tig0031250:-43659 | None:intergenic |
ATGGCTCTAAGTCTTGGTGC+TGG | 0.559590 | tig0031250:+41360 | Msa1445950:CDS |
AGGTCTTCAACAGGTCTATG+AGG | 0.562574 | tig0031250:-42271 | None:intergenic |
TGCTAAGGTTAGTTTATGCA+GGG | 0.563829 | tig0031250:+44555 | Msa1445950:CDS |
GGCAATATGCTCACAGACCA+TGG | 0.566714 | tig0031250:-44505 | None:intergenic |
TGCAATGCATACTACTGTGA+TGG | 0.570215 | tig0031250:+41647 | Msa1445950:CDS |
GGGATATCACGCAACCACAC+CGG | 0.570381 | tig0031250:-40280 | None:intergenic |
CTATCCCCGCGCCACTCCCG+AGG | 0.571107 | tig0031250:+38507 | Msa1445950:CDS |
GTTGAACTTGATGCGTCCCT+TGG | 0.573075 | tig0031250:+41219 | Msa1445950:CDS |
GCACCAGCCTGTTAAAGGAC+AGG | 0.573633 | tig0031250:+39176 | Msa1445950:CDS |
AGTGTATGTCTGACCACGAA+AGG | 0.583763 | tig0031250:-44476 | None:intergenic |
GATGAGAGCACGATGATCGT+AGG | 0.583812 | tig0031250:-38443 | None:intergenic |
GGTTGCTTGCACATGACCCA+TGG | 0.586445 | tig0031250:-41387 | None:intergenic |
GGCGCGGGGATAGTGAATGC+CGG | 0.589441 | tig0031250:-38497 | None:intergenic |
AACGCGCAACAGCAAATGCA+AGG | 0.595018 | tig0031250:-42291 | None:intergenic |
CAGGAAAATGTCCACCGTGA+AGG | 0.595283 | tig0031250:+44370 | Msa1445950:CDS |
ATTTCAGGCACATGTATACC+AGG | 0.597725 | tig0031250:+44351 | Msa1445950:intron |
AAAACTGGGTTCAAAGCAGG+AGG | 0.599056 | tig0031250:+43920 | Msa1445950:CDS |
CTCATAGCAAAGGCCAAGGA+AGG | 0.599643 | tig0031250:+39114 | Msa1445950:CDS |
TGGTTCGAAATTCAATACCC+GGG | 0.600023 | tig0031250:-40300 | None:intergenic |
TCTCATAAGATTCACCACCT+TGG | 0.601393 | tig0031250:-40660 | None:intergenic |
TTTGCAGTGGTTTCCCGGTG+TGG | 0.601919 | tig0031250:+40266 | Msa1445950:intron |
AAGAAGAACAAGAACGGTGG+TGG | 0.603454 | tig0031250:+38315 | Msa1445950:CDS |
GAGACAAGTTCAATCCTTCA+CGG | 0.606765 | tig0031250:-44384 | None:intergenic |
TCAAACACTGCATTCTACCA+AGG | 0.612254 | tig0031250:-41236 | None:intergenic |
GGTGGTGAATCTTATGAGAG+AGG | 0.613499 | tig0031250:+40664 | Msa1445950:CDS |
TGATCTCATAGCAAAGGCCA+AGG | 0.615674 | tig0031250:+39110 | Msa1445950:CDS |
AAAATACCTCGGGAGTGGCG+CGG | 0.621596 | tig0031250:-38513 | None:intergenic |
ATAGCAAAGGCCAAGGAAGG+TGG | 0.622070 | tig0031250:+39117 | Msa1445950:CDS |
AATACCTCGGGAGTGGCGCG+GGG | 0.630337 | tig0031250:-38511 | None:intergenic |
GCCCTTATGCATGTGCCGAG+TGG | 0.632718 | tig0031250:+39395 | Msa1445950:CDS |
GTGGCCTGATCTCATAGCAA+AGG | 0.635798 | tig0031250:+39104 | Msa1445950:CDS |
AGGAACAAGAAGAACAAGAA+CGG | 0.645363 | tig0031250:+38309 | Msa1445950:CDS |
GAGAGACCCGAAGTTCCACT+CGG | 0.656694 | tig0031250:-39410 | None:intergenic |
CAAACACTGCATTCTACCAA+GGG | 0.662381 | tig0031250:-41235 | None:intergenic |
TCACCAACATATATAAAACT+GGG | 0.665960 | tig0031250:+43906 | Msa1445950:CDS |
CATCGTGCTCTCATCATCGA+CGG | 0.666322 | tig0031250:+38451 | Msa1445950:CDS |
GAAGCGGTTTGTTTCCAAGG+TGG | 0.667983 | tig0031250:+40646 | Msa1445950:CDS |
AAGCAGAAGCAGAAGCAGCG+TGG | 0.669963 | tig0031250:+38401 | Msa1445950:CDS |
CGGCGGAGATGAGCATGCGA+CGG | 0.670714 | tig0031250:-38477 | None:intergenic |
GAACGGTGGTGGTATTCACA+TGG | 0.676532 | tig0031250:+38326 | Msa1445950:CDS |
CTGCTGAATGAGCCAAAATG+GGG | 0.683354 | tig0031250:+43822 | Msa1445950:CDS |
AAACCTAGGAGGAAATGAAG+CGG | 0.690366 | tig0031250:+40630 | Msa1445950:intron |
AGACATACACTTTACCACCA+TGG | 0.695640 | tig0031250:+44488 | Msa1445950:CDS |
GCGGGGATAGTGAATGCCGG+CGG | 0.705125 | tig0031250:-38494 | None:intergenic |
GTAGAATGCAGTGTTTGACA+AGG | 0.733703 | tig0031250:+41241 | Msa1445950:CDS |
AACAAGAAGAACAAGAACGG+TGG | 0.739158 | tig0031250:+38312 | Msa1445950:CDS |
ACAAGTTCAATCCTTCACGG+TGG | 0.767429 | tig0031250:-44381 | None:intergenic |
AATATGCTCACAGACCATGG+TGG | 0.798934 | tig0031250:-44502 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAATAAATATCAAAGATA+AGG | - | tig0031250:39240-39259 | None:intergenic | 10.0% |
!!! | AAATAAAGAAAATACTATTT+TGG | - | tig0031250:39268-39287 | None:intergenic | 10.0% |
!!! | TTTTTTTATTCATAATTTGA+AGG | + | tig0031250:40776-40795 | Msa1445950:intron | 10.0% |
!! | TATTAATATATCAAATATGA+AGG | - | tig0031250:41038-41057 | None:intergenic | 10.0% |
!! | ATATATTAATAGATATTGTA+TGG | + | tig0031250:41047-41066 | Msa1445950:intron | 10.0% |
!! | AAATAAAAATAAATATGTTC+AGG | + | tig0031250:41484-41503 | Msa1445950:intron | 10.0% |
!! | AAATATACATAGTTAAAATA+GGG | - | tig0031250:41833-41852 | None:intergenic | 10.0% |
!!! | ATAAAATTGACAATTTTTTT+GGG | + | tig0031250:42715-42734 | Msa1445950:intron | 10.0% |
!!! | TTTTGTATTTTATTTTGTTA+GGG | - | tig0031250:42913-42932 | None:intergenic | 10.0% |
!! | AATCACTAAAATAAAATAAT+AGG | - | tig0031250:43974-43993 | None:intergenic | 10.0% |
!! | TATAATTAAGAAAAATACCT+CGG | - | tig0031250:38527-38546 | None:intergenic | 15.0% |
!! | TAGTGGAAAATAAAATAAAA+TGG | + | tig0031250:39745-39764 | Msa1445950:intron | 15.0% |
!! | AAAATAAAATAAAATGGATG+TGG | + | tig0031250:39751-39770 | Msa1445950:intron | 15.0% |
!! | ACTGAAAATATTTAATACTA+CGG | - | tig0031250:40540-40559 | None:intergenic | 15.0% |
!! | ATATAGTTTACAATATCATA+TGG | - | tig0031250:41420-41439 | None:intergenic | 15.0% |
!! | AATCATTAGTTATTCTATAT+AGG | - | tig0031250:41561-41580 | None:intergenic | 15.0% |
!! | GAAATATACATAGTTAAAAT+AGG | - | tig0031250:41834-41853 | None:intergenic | 15.0% |
!! | AAGTCTTCAAAATTATTATA+TGG | + | tig0031250:42330-42349 | Msa1445950:CDS | 15.0% |
!!! | GTTGATTAATTTTTTTTATC+TGG | + | tig0031250:42360-42379 | Msa1445950:intron | 15.0% |
!!! | CATAAAATTGACAATTTTTT+TGG | + | tig0031250:42714-42733 | Msa1445950:intron | 15.0% |
!!! | TTTGTATTTTATTTTGTTAG+GGG | - | tig0031250:42912-42931 | None:intergenic | 15.0% |
!!! | GTTTTGTATTTTATTTTGTT+AGG | - | tig0031250:42914-42933 | None:intergenic | 15.0% |
!!! | TAAACATATATTTGTTATAC+TGG | + | tig0031250:43509-43528 | Msa1445950:intron | 15.0% |
!!! | AAACATATATTTGTTATACT+GGG | + | tig0031250:43510-43529 | Msa1445950:intron | 15.0% |
!! | ATAATTAAGAAAAATACCTC+GGG | - | tig0031250:38526-38545 | None:intergenic | 20.0% |
!! | TAAATAGTAACTGATAAAAC+AGG | + | tig0031250:38634-38653 | Msa1445950:intron | 20.0% |
!! | AAATAGTAACTGATAAAACA+GGG | + | tig0031250:38635-38654 | Msa1445950:intron | 20.0% |
!! | TGACAATATATGTCTATTAT+TGG | - | tig0031250:38863-38882 | None:intergenic | 20.0% |
!! | TTAATTATACCCAAAAGTTA+TGG | - | tig0031250:38903-38922 | None:intergenic | 20.0% |
!!! | TTTTCATGTAATTTTAGATG+TGG | + | tig0031250:39085-39104 | Msa1445950:intron | 20.0% |
!! | CTTAAAGTTGTTTATCTAAA+TGG | - | tig0031250:39490-39509 | None:intergenic | 20.0% |
!!! | TATTTTATTTTCCACTAAGT+TGG | - | tig0031250:39742-39761 | None:intergenic | 20.0% |
!! | ACAACTATAAAACTAAAACA+AGG | - | tig0031250:39848-39867 | None:intergenic | 20.0% |
!! | TTGACAATTAAAAAAGAGTA+TGG | - | tig0031250:39900-39919 | None:intergenic | 20.0% |
!!! | ATTTTAAGTTTATTCTCCAT+TGG | + | tig0031250:39925-39944 | Msa1445950:intron | 20.0% |
!! | ATAAACTAGTTCATAGTTTA+TGG | - | tig0031250:40032-40051 | None:intergenic | 20.0% |
!!! | TCTATCTTATTTCTCTATTT+TGG | + | tig0031250:40076-40095 | Msa1445950:intron | 20.0% |
!! | AAATTCATCACAAATACAAA+AGG | - | tig0031250:40418-40437 | None:intergenic | 20.0% |
!!! | TTTGTGATGAATTTTTCATT+CGG | + | tig0031250:40424-40443 | Msa1445950:intron | 20.0% |
!!! | GTAGTATTAAATATTTTCAG+TGG | + | tig0031250:40539-40558 | Msa1445950:intron | 20.0% |
!!! | GTGGATATTGTTTTTTTAAT+TGG | + | tig0031250:40558-40577 | Msa1445950:intron | 20.0% |
!!! | TTTTTTTAATTGGACTTTGA+AGG | + | tig0031250:40568-40587 | Msa1445950:intron | 20.0% |
!! | ATATAACATAATAGCTACTA+AGG | - | tig0031250:40976-40995 | None:intergenic | 20.0% |
!! | ATTAATAGATATTGTATGGT+AGG | + | tig0031250:41051-41070 | Msa1445950:intron | 20.0% |
!!! | GGAATTATCTTTTAATATGA+GGG | + | tig0031250:41751-41770 | Msa1445950:intron | 20.0% |
!! | TGTGGTTTCTTAAAAAAAAT+TGG | + | tig0031250:42477-42496 | Msa1445950:intron | 20.0% |
!!! | TTTTCCAATATTTGTATTAG+AGG | + | tig0031250:42621-42640 | Msa1445950:intron | 20.0% |
!! | TTTCCAATATTTGTATTAGA+GGG | + | tig0031250:42622-42641 | Msa1445950:intron | 20.0% |
!!! | ATCATTTTTTGTTCCTTATT+AGG | + | tig0031250:42672-42691 | Msa1445950:intron | 20.0% |
!!! | AATTGTCAATTTTATGCAAA+CGG | - | tig0031250:42710-42729 | None:intergenic | 20.0% |
!!! | TCTTTAAGGACTAAAAATAA+AGG | + | tig0031250:42837-42856 | Msa1445950:intron | 20.0% |
!!! | TTGTATTTTATTTTGTTAGG+GGG | - | tig0031250:42911-42930 | None:intergenic | 20.0% |
!!! | TTTTGTTTTTTCCATTATAG+AGG | + | tig0031250:43362-43381 | Msa1445950:intron | 20.0% |
!! | ACAAGAAACAAATTATTAAG+TGG | - | tig0031250:43547-43566 | None:intergenic | 20.0% |
!!! | ACTTAATAATTTGTTTCTTG+TGG | + | tig0031250:43546-43565 | Msa1445950:intron | 20.0% |
!!! | CTTAATAATTTGTTTCTTGT+GGG | + | tig0031250:43547-43566 | Msa1445950:intron | 20.0% |
!!! | CTTTTTATGTTACAGTATTT+TGG | + | tig0031250:43605-43624 | Msa1445950:intron | 20.0% |
!!! | TTGATTAACCTCTTTTTTTT+AGG | + | tig0031250:43798-43817 | Msa1445950:intron | 20.0% |
!! | AATAGGTTAATAACTATTTC+AGG | - | tig0031250:43957-43976 | None:intergenic | 20.0% |
!! | AATAGGTTAATAACTATTTC+AGG | - | tig0031250:43957-43976 | None:intergenic | 20.0% |
!!! | TTATAAGGTTTTAGATAAAG+AGG | + | tig0031250:44079-44098 | Msa1445950:intron | 20.0% |
!!! | TATAAGGTTTTAGATAAAGA+GGG | + | tig0031250:44080-44099 | Msa1445950:intron | 20.0% |
!!! | TTTGTTTTCCTACTTAATTA+GGG | - | tig0031250:44218-44237 | None:intergenic | 20.0% |
!!! | ATTTGTTTTCCTACTTAATT+AGG | - | tig0031250:44219-44238 | None:intergenic | 20.0% |
!!! | TCTTCTAAAACCATAACTTT+TGG | + | tig0031250:38890-38909 | Msa1445950:intron | 25.0% |
!!! | CTTCTAAAACCATAACTTTT+GGG | + | tig0031250:38891-38910 | Msa1445950:intron | 25.0% |
! | TGGGTATAATTAATTGTGAT+TGG | + | tig0031250:38910-38929 | Msa1445950:intron | 25.0% |
!! | TAATCGAAACTTATGTGTTT+TGG | + | tig0031250:39148-39167 | Msa1445950:CDS | 25.0% |
!!! | AAACTTATGTGTTTTGGAAT+GGG | + | tig0031250:39154-39173 | Msa1445950:CDS | 25.0% |
! | TATATTTCTCCTTACTATCT+TGG | + | tig0031250:39207-39226 | Msa1445950:intron | 25.0% |
!! | ATGTGCAGTATAATTTTGAA+GGG | + | tig0031250:39305-39324 | Msa1445950:intron | 25.0% |
! | CAATTGGACATACAAAAAAA+AGG | - | tig0031250:39647-39666 | None:intergenic | 25.0% |
!! | TTTTTGTATGTCCAATTGAA+TGG | + | tig0031250:39649-39668 | Msa1445950:intron | 25.0% |
! | AAGTTGTACATTAATTCCTA+TGG | + | tig0031250:39812-39831 | Msa1445950:intron | 25.0% |
! | CTAAAACATAACAAACAGAA+CGG | - | tig0031250:40123-40142 | None:intergenic | 25.0% |
!!! | AGTTTTAGATTACGATTAAC+TGG | + | tig0031250:40454-40473 | Msa1445950:intron | 25.0% |
!!! | GTTTTAGATTACGATTAACT+GGG | + | tig0031250:40455-40474 | Msa1445950:intron | 25.0% |
!! | TTTTAGATTACGATTAACTG+GGG | + | tig0031250:40456-40475 | Msa1445950:intron | 25.0% |
! | CTAACCTGTAACAAAATTAT+TGG | - | tig0031250:40716-40735 | None:intergenic | 25.0% |
! | AAGGATATTAATAGTCCTAT+TGG | + | tig0031250:40795-40814 | Msa1445950:intron | 25.0% |
! | AGGATATTAATAGTCCTATT+GGG | + | tig0031250:40796-40815 | Msa1445950:intron | 25.0% |
!!! | AGAGAGTTTTAATTTTTCCT+GGG | - | tig0031250:40826-40845 | None:intergenic | 25.0% |
!!! | AAGAGAGTTTTAATTTTTCC+TGG | - | tig0031250:40827-40846 | None:intergenic | 25.0% |
! | AGTAACAAATTAGAAGAGAA+AGG | - | tig0031250:40937-40956 | None:intergenic | 25.0% |
! | AATACCTAACATAAACAGTT+AGG | - | tig0031250:41154-41173 | None:intergenic | 25.0% |
! | TATCAGATTGAGAATGAATA+TGG | + | tig0031250:41279-41298 | Msa1445950:CDS | 25.0% |
! | ATCAGATTGAGAATGAATAT+GGG | + | tig0031250:41280-41299 | Msa1445950:CDS | 25.0% |
! | TTAAAAGATAATTCCCTTGA+AGG | - | tig0031250:41746-41765 | None:intergenic | 25.0% |
!! | GGGAATTATCTTTTAATATG+AGG | + | tig0031250:41750-41769 | Msa1445950:intron | 25.0% |
! | GTAATAGTTATCATGACAAT+TGG | - | tig0031250:41797-41816 | None:intergenic | 25.0% |
! | TTCCAATATTTGTATTAGAG+GGG | + | tig0031250:42623-42642 | Msa1445950:intron | 25.0% |
! | GAAAACTGTAATTCCTAATA+AGG | - | tig0031250:42688-42707 | None:intergenic | 25.0% |
!!! | ACACCTTTTTTGTTTCTTTA+AGG | + | tig0031250:42823-42842 | Msa1445950:intron | 25.0% |
! | AGTCCTTAAAGAAACAAAAA+AGG | - | tig0031250:42829-42848 | None:intergenic | 25.0% |
! | AAAAAATTCGAAAATGCGAA+AGG | + | tig0031250:43096-43115 | Msa1445950:intron | 25.0% |
!!! | TTTACATGTCGCTTTAAAAT+GGG | - | tig0031250:43284-43303 | None:intergenic | 25.0% |
! | TGTATGTCAAACATTACTAT+TGG | + | tig0031250:43308-43327 | Msa1445950:intron | 25.0% |
!!! | TTTATGTTACAGTATTTTGG+TGG | + | tig0031250:43608-43627 | Msa1445950:intron | 25.0% |
!!! | TATTTTGGTGGAACAAATTT+TGG | + | tig0031250:43620-43639 | Msa1445950:CDS | 25.0% |
!! | TCATAACTTGTAATTTGCAA+GGG | - | tig0031250:43662-43681 | None:intergenic | 25.0% |
!! | ATCATAACTTGTAATTTGCA+AGG | - | tig0031250:43663-43682 | None:intergenic | 25.0% |
! | TTCACCAACATATATAAAAC+TGG | + | tig0031250:43905-43924 | Msa1445950:CDS | 25.0% |
! | TCACCAACATATATAAAACT+GGG | + | tig0031250:43906-43925 | Msa1445950:CDS | 25.0% |
! | ATGGTATCACAACTAATAAT+AGG | - | tig0031250:44052-44071 | None:intergenic | 25.0% |
! | AAAACCTTATAACTTCAACA+TGG | - | tig0031250:44071-44090 | None:intergenic | 25.0% |
! | ATGATGTTTACAAAGAAACA+TGG | + | tig0031250:44240-44259 | Msa1445950:intron | 25.0% |
! | ACCAATCTTAAGAGATAATA+AGG | + | tig0031250:44265-44284 | Msa1445950:intron | 25.0% |
! | ACCTTATTATCTCTTAAGAT+TGG | - | tig0031250:44269-44288 | None:intergenic | 25.0% |
CTATTATACTGAACAGCTTA+TGG | - | tig0031250:38736-38755 | None:intergenic | 30.0% | |
!!! | GAAACTTATGTGTTTTGGAA+TGG | + | tig0031250:39153-39172 | Msa1445950:CDS | 30.0% |
! | CATGTGCAGTATAATTTTGA+AGG | + | tig0031250:39304-39323 | Msa1445950:intron | 30.0% |
ATAGTCACCAAAGAATACAA+GGG | - | tig0031250:39518-39537 | None:intergenic | 30.0% | |
CAATTTGACTACCATTCAAT+TGG | - | tig0031250:39663-39682 | None:intergenic | 30.0% | |
TTGAATGGTAGTCAAATTGT+TGG | + | tig0031250:39664-39683 | Msa1445950:intron | 30.0% | |
!!! | GTAGTCAAATTGTTGGTTTT+AGG | + | tig0031250:39671-39690 | Msa1445950:intron | 30.0% |
AGTTTATTCTCCATTGGAAA+AGG | + | tig0031250:39931-39950 | Msa1445950:intron | 30.0% | |
CAAAGAATTTCTACCTTGAA+AGG | - | tig0031250:40334-40353 | None:intergenic | 30.0% | |
TCAAGGTAGAAATTCTTTGT+TGG | + | tig0031250:40335-40354 | Msa1445950:intron | 30.0% | |
!!! | AGGTTTTGAAAAAACAGAAG+TGG | - | tig0031250:40616-40635 | None:intergenic | 30.0% |
!!! | CTTCTGTTTTTTCAAAACCT+AGG | + | tig0031250:40616-40635 | Msa1445950:intron | 30.0% |
! | TGGACCAATAATTTTGTTAC+AGG | + | tig0031250:40709-40728 | Msa1445950:CDS | 30.0% |
! | TATGGAGTTTGGATTTTATG+TGG | + | tig0031250:40743-40762 | Msa1445950:intron | 30.0% |
GGATATTAATAGTCCTATTG+GGG | + | tig0031250:40797-40816 | Msa1445950:intron | 30.0% | |
!!! | ACCTGTGTCTTGTTTTTAAT+TGG | + | tig0031250:40870-40889 | Msa1445950:intron | 30.0% |
TCCAATTAAAAACAAGACAC+AGG | - | tig0031250:40874-40893 | None:intergenic | 30.0% | |
ATAAATCCCAATCTGGTAAA+AGG | - | tig0031250:40901-40920 | None:intergenic | 30.0% | |
TAACATAATAGCTACTAAGG+TGG | - | tig0031250:40973-40992 | None:intergenic | 30.0% | |
TTTGACATTCTGAATAGCTA+AGG | + | tig0031250:41002-41021 | Msa1445950:intron | 30.0% | |
! | ATCCAAATTTCGAAGCATTT+AGG | + | tig0031250:41124-41143 | Msa1445950:intron | 30.0% |
! | AATCACAGTTCTTTTCAATG+TGG | - | tig0031250:41449-41468 | None:intergenic | 30.0% |
!!! | CTCGTAACAAACCAATTTTT+TGG | + | tig0031250:41684-41703 | Msa1445950:CDS | 30.0% |
!!! | AATTTTTTGGACAGAGAACT+GGG | + | tig0031250:41697-41716 | Msa1445950:CDS | 30.0% |
ACTCATGATTATATAGTGAG+TGG | + | tig0031250:42050-42069 | Msa1445950:intron | 30.0% | |
CTCACAAGTTATTTGGTATT+TGG | + | tig0031250:42177-42196 | Msa1445950:intron | 30.0% | |
!!! | TGCTTCCTATTGATTTTTGA+AGG | + | tig0031250:42224-42243 | Msa1445950:intron | 30.0% |
GTGTACCTTCAAAAATCAAT+AGG | - | tig0031250:42232-42251 | None:intergenic | 30.0% | |
CAAAATCCGCCATATAAATA+TGG | + | tig0031250:42441-42460 | Msa1445950:intron | 30.0% | |
CATCGCAAACCATATTTATA+TGG | - | tig0031250:42453-42472 | None:intergenic | 30.0% | |
! | CATATAAATATGGTTTGCGA+TGG | + | tig0031250:42451-42470 | Msa1445950:intron | 30.0% |
CTTAAAAAAAATTGGCGTTG+TGG | + | tig0031250:42485-42504 | Msa1445950:intron | 30.0% | |
ATCCTTCACAAGATAACTAT+TGG | - | tig0031250:42599-42618 | None:intergenic | 30.0% | |
ATCCCCTCTAATACAAATAT+TGG | - | tig0031250:42628-42647 | None:intergenic | 30.0% | |
! | TAGTGTTTCTATTCTATCAC+CGG | + | tig0031250:42789-42808 | Msa1445950:intron | 30.0% |
! | AAAAAAGTTGGAGGCTATTT+TGG | + | tig0031250:43144-43163 | Msa1445950:intron | 30.0% |
!! | AAAAAGTTGGAGGCTATTTT+GGG | + | tig0031250:43145-43164 | Msa1445950:intron | 30.0% |
!!! | GTTATTTTTTAGCTCCACAT+TGG | - | tig0031250:43256-43275 | None:intergenic | 30.0% |
!! | CTTTACATGTCGCTTTAAAA+TGG | - | tig0031250:43285-43304 | None:intergenic | 30.0% |
!!! | CATTTTAAAGCGACATGTAA+AGG | + | tig0031250:43283-43302 | Msa1445950:intron | 30.0% |
TTAGATGAAAGTCAAAACAG+AGG | - | tig0031250:43397-43416 | None:intergenic | 30.0% | |
! | ATTGAGATGGTAGCTAATTT+TGG | + | tig0031250:43738-43757 | Msa1445950:intron | 30.0% |
! | TTGAGATGGTAGCTAATTTT+GGG | + | tig0031250:43739-43758 | Msa1445950:intron | 30.0% |
!! | GAACCCAGTTTTATATATGT+TGG | - | tig0031250:43912-43931 | None:intergenic | 30.0% |
GTTAATAACTATTTCAGGCT+TGG | - | tig0031250:43952-43971 | None:intergenic | 30.0% | |
TTTAGTGATTGCAAAAGTCA+TGG | + | tig0031250:43984-44003 | Msa1445950:intron | 30.0% | |
GTTAATAACTATTTCAGGCT+TGG | - | tig0031250:43952-43971 | None:intergenic | 30.0% | |
GATACCATGTTGAAGTTATA+AGG | + | tig0031250:44064-44083 | Msa1445950:intron | 30.0% | |
GTATTGTATTAGTACGAATG+TGG | - | tig0031250:44189-44208 | None:intergenic | 30.0% | |
ACTTCAAACCCTAATTAAGT+AGG | + | tig0031250:44207-44226 | Msa1445950:intron | 30.0% | |
AAGAGATAATAAGGTAGTGT+AGG | + | tig0031250:44274-44293 | Msa1445950:intron | 30.0% | |
AATTGTTCCAATTCCAAAGC+AGG | + | tig0031250:38289-38308 | Msa1445950:CDS | 35.0% | |
AGGAACAAGAAGAACAAGAA+CGG | + | tig0031250:38309-38328 | Msa1445950:CDS | 35.0% | |
! | GGAAAGAAGTCTTTGAGAAA+TGG | - | tig0031250:38715-38734 | None:intergenic | 35.0% |
CTATTATTGGACGAAATCCA+CGG | - | tig0031250:38850-38869 | None:intergenic | 35.0% | |
CAAATGGTTGTTCAAACAGT+TGG | - | tig0031250:38953-38972 | None:intergenic | 35.0% | |
GAAAAGCTTAAATTGCCACT+TGG | - | tig0031250:38989-39008 | None:intergenic | 35.0% | |
!! | TGCAGTATAATTTTGAAGGG+AGG | + | tig0031250:39308-39327 | Msa1445950:intron | 35.0% |
GAGAAAGAAATAGAGTCCAT+TGG | - | tig0031250:39368-39387 | None:intergenic | 35.0% | |
! | CTCTATTTCTTTCTCCGTAT+AGG | + | tig0031250:39373-39392 | Msa1445950:CDS | 35.0% |
AGAACATCCCTTGTATTCTT+TGG | + | tig0031250:39508-39527 | Msa1445950:intron | 35.0% | |
GATAGTCACCAAAGAATACA+AGG | - | tig0031250:39519-39538 | None:intergenic | 35.0% | |
TCTGATTGCGCTCATTATAT+AGG | + | tig0031250:39537-39556 | Msa1445950:intron | 35.0% | |
AAATTAGTCCTTATGAGGCT+TGG | - | tig0031250:39611-39630 | None:intergenic | 35.0% | |
AAGCCTCATAAGGACTAATT+TGG | + | tig0031250:39610-39629 | Msa1445950:intron | 35.0% | |
AGCCTCATAAGGACTAATTT+GGG | + | tig0031250:39611-39630 | Msa1445950:intron | 35.0% | |
ATCCCAAATTAGTCCTTATG+AGG | - | tig0031250:39616-39635 | None:intergenic | 35.0% | |
TAAAACTAAAACAAGGCGAG+AGG | - | tig0031250:39841-39860 | None:intergenic | 35.0% | |
TCCATTGGAAAAGGATTAAG+TGG | + | tig0031250:39940-39959 | Msa1445950:intron | 35.0% | |
! | ACCACTTAATCCTTTTCCAA+TGG | - | tig0031250:39944-39963 | None:intergenic | 35.0% |
!! | AGTGGTCGTATTTTGAAAGA+AGG | + | tig0031250:39958-39977 | Msa1445950:intron | 35.0% |
CGAAGTAATTCCTACTTTGA+TGG | + | tig0031250:40004-40023 | Msa1445950:intron | 35.0% | |
GTTTATGGTTCCATCAAAGT+AGG | - | tig0031250:40017-40036 | None:intergenic | 35.0% | |
!!! | GTTTTAGTTGTTCAGCTCTT+AGG | + | tig0031250:40136-40155 | Msa1445950:intron | 35.0% |
! | TTGGTTCGAAATTCAATACC+CGG | - | tig0031250:40304-40323 | None:intergenic | 35.0% |
AACCAATAATGCACCTTTCA+AGG | + | tig0031250:40318-40337 | Msa1445950:CDS | 35.0% | |
! | TACCTTGAAAGGTGCATTAT+TGG | - | tig0031250:40323-40342 | None:intergenic | 35.0% |
TTTGAAGGATTGCCTTAACA+TGG | + | tig0031250:40583-40602 | Msa1445950:intron | 35.0% | |
AGTGGATCAAAACCATGTTA+AGG | - | tig0031250:40598-40617 | None:intergenic | 35.0% | |
!!! | CTGTTTTTTCAAAACCTAGG+AGG | + | tig0031250:40619-40638 | Msa1445950:intron | 35.0% |
TTACAGGTTAGAAGAGAGTA+TGG | + | tig0031250:40725-40744 | Msa1445950:intron | 35.0% | |
! | TTAGAAGAGAGTATGGAGTT+TGG | + | tig0031250:40732-40751 | Msa1445950:intron | 35.0% |
! | GAATGACCTTTTACCAGATT+GGG | + | tig0031250:40892-40911 | Msa1445950:intron | 35.0% |
ACATTCTGAATAGCTAAGGT+GGG | + | tig0031250:41006-41025 | Msa1445950:intron | 35.0% | |
CACCTAAATGCTTCGAAATT+TGG | - | tig0031250:41129-41148 | None:intergenic | 35.0% | |
! | CAAATTTCGAAGCATTTAGG+TGG | + | tig0031250:41127-41146 | Msa1445950:intron | 35.0% |
TGGACCTAACTGTTTATGTT+AGG | + | tig0031250:41147-41166 | Msa1445950:intron | 35.0% | |
! | AAGGCAAAGAGTACGTTAAA+TGG | + | tig0031250:41328-41347 | Msa1445950:CDS | 35.0% |
! | AGGCAAAGAGTACGTTAAAT+GGG | + | tig0031250:41329-41348 | Msa1445950:CDS | 35.0% |
! | ACAATATCATATGGAGCATC+AGG | - | tig0031250:41411-41430 | None:intergenic | 35.0% |
!! | ATTGGTTTGTTACGAGAGTT+TGG | - | tig0031250:41680-41699 | None:intergenic | 35.0% |
CAGTTCTCTGTCCAAAAAAT+TGG | - | tig0031250:41698-41717 | None:intergenic | 35.0% | |
!!! | CAATTTTTTGGACAGAGAAC+TGG | + | tig0031250:41696-41715 | Msa1445950:CDS | 35.0% |
ATGAACAAACACATCCTTCA+AGG | + | tig0031250:41729-41748 | Msa1445950:intron | 35.0% | |
TGAACAAACACATCCTTCAA+GGG | + | tig0031250:41730-41749 | Msa1445950:intron | 35.0% | |
! | AAAATAGGGTGTCAAGAAAG+AGG | - | tig0031250:41819-41838 | None:intergenic | 35.0% |
GCATAACATAAGAGCAAAGT+AGG | - | tig0031250:41966-41985 | None:intergenic | 35.0% | |
TTATTTGGTATTTGGCTGTG+TGG | + | tig0031250:42185-42204 | Msa1445950:intron | 35.0% | |
!! | ATTTTTGAAGGTACACACAG+TGG | + | tig0031250:42236-42255 | Msa1445950:intron | 35.0% |
!! | TTTTTGAAGGTACACACAGT+GGG | + | tig0031250:42237-42256 | Msa1445950:intron | 35.0% |
TGCTTTACTAGTGTTATGAC+TGG | + | tig0031250:42400-42419 | Msa1445950:intron | 35.0% | |
!!! | TTTATATGGCGGATTTTGAC+TGG | - | tig0031250:42439-42458 | None:intergenic | 35.0% |
CGCAAACCATATTTATATGG+CGG | - | tig0031250:42450-42469 | None:intergenic | 35.0% | |
!! | AGATAACTATTGGCTTAGCA+AGG | - | tig0031250:42589-42608 | None:intergenic | 35.0% |
AGCCAATAGTTATCTTGTGA+AGG | + | tig0031250:42594-42613 | Msa1445950:intron | 35.0% | |
! | AGTGTTTCTATTCTATCACC+GGG | + | tig0031250:42790-42809 | Msa1445950:intron | 35.0% |
!!! | AAAGGTGTATTTTTAGTCCC+CGG | - | tig0031250:42811-42830 | None:intergenic | 35.0% |
TCGCAACTTCTTGAAACATA+GGG | - | tig0031250:42882-42901 | None:intergenic | 35.0% | |
ATCGCAACTTCTTGAAACAT+AGG | - | tig0031250:42883-42902 | None:intergenic | 35.0% | |
! | GTTTCAAGAAGTTGCGATTT+TGG | + | tig0031250:42885-42904 | Msa1445950:intron | 35.0% |
!! | AGCTTTGACTTGGTCAAAAT+TGG | - | tig0031250:42979-42998 | None:intergenic | 35.0% |
! | AGAGGCATAAGCAAAAAAGT+TGG | + | tig0031250:43132-43151 | Msa1445950:intron | 35.0% |
! | TTTTTGTGGGGGGTTTAATT+AGG | - | tig0031250:43172-43191 | None:intergenic | 35.0% |
AATTAAACCCCCCACAAAAA+CGG | + | tig0031250:43172-43191 | Msa1445950:intron | 35.0% | |
!!! | ACTTTACAAGCCGTTTTTGT+GGG | - | tig0031250:43185-43204 | None:intergenic | 35.0% |
ACAGTGTGGTTAAAAGTGAT+GGG | - | tig0031250:43216-43235 | None:intergenic | 35.0% | |
AACAGTGTGGTTAAAAGTGA+TGG | - | tig0031250:43217-43236 | None:intergenic | 35.0% | |
CTCCACATTGGATAATGATA+TGG | - | tig0031250:43244-43263 | None:intergenic | 35.0% | |
GGATACAACAACCTCTATAA+TGG | - | tig0031250:43376-43395 | None:intergenic | 35.0% | |
AAAAAGACCTGTTAAGATGC+AGG | - | tig0031250:43591-43610 | None:intergenic | 35.0% | |
TACGTACCATACTCATCAAT+TGG | - | tig0031250:43695-43714 | None:intergenic | 35.0% | |
! | GGTACGTAGAAGTATAACAA+AGG | + | tig0031250:43707-43726 | Msa1445950:intron | 35.0% |
! | AAAGGACTGTGTTATTGAGA+TGG | + | tig0031250:43725-43744 | Msa1445950:intron | 35.0% |
GATTCATATGACTGTTGACA+TGG | + | tig0031250:43761-43780 | Msa1445950:intron | 35.0% | |
TCAGCAGACCTAAAAAAAAG+AGG | - | tig0031250:43809-43828 | None:intergenic | 35.0% | |
TATAAAACTGGGTTCAAAGC+AGG | + | tig0031250:43917-43936 | Msa1445950:CDS | 35.0% | |
AAGTCATGGAGGAAGTTATA+AGG | + | tig0031250:43998-44017 | Msa1445950:intron | 35.0% | |
! | GATGAGTATAGTTTGAGACA+AGG | + | tig0031250:44151-44170 | Msa1445950:intron | 35.0% |
AGCTAATCGTACGAGATAAA+TGG | + | tig0031250:44320-44339 | Msa1445950:intron | 35.0% | |
GCTAATCGTACGAGATAAAT+GGG | + | tig0031250:44321-44340 | Msa1445950:intron | 35.0% | |
TAAATGGGTGGCATAATTTC+AGG | + | tig0031250:44336-44355 | Msa1445950:intron | 35.0% | |
TGCTTTACGTTCATCAATGT+TGG | - | tig0031250:44446-44465 | None:intergenic | 35.0% | |
! | TGCGATTTTCAATACTGCTA+AGG | + | tig0031250:44540-44559 | Msa1445950:CDS | 35.0% |
!! | TGCTAAGGTTAGTTTATGCA+GGG | + | tig0031250:44555-44574 | Msa1445950:CDS | 35.0% |
! | GTTTATGCAGGGTGTATTTT+TGG | + | tig0031250:44566-44585 | Msa1445950:CDS | 35.0% |
!! | TCTTGTTCCTGCTTTGGAAT+TGG | - | tig0031250:38299-38318 | None:intergenic | 40.0% |
TGTTCTTCTTGTTCCTGCTT+TGG | - | tig0031250:38305-38324 | None:intergenic | 40.0% | |
AACAAGAAGAACAAGAACGG+TGG | + | tig0031250:38312-38331 | Msa1445950:CDS | 40.0% | |
TAAGAAAAATACCTCGGGAG+TGG | - | tig0031250:38521-38540 | None:intergenic | 40.0% | |
TCCTAAAACAACATGCAAGC+AGG | + | tig0031250:38590-38609 | Msa1445950:intron | 40.0% | |
!!! | TCCTGCTTGCATGTTGTTTT+AGG | - | tig0031250:38594-38613 | None:intergenic | 40.0% |
AAATCCACGGTTGTTCATGT+TGG | - | tig0031250:38837-38856 | None:intergenic | 40.0% | |
ATGTTGACCTGTCCTTTAAC+AGG | - | tig0031250:39186-39205 | None:intergenic | 40.0% | |
TTTCTCCTTACTATCTTGGC+AGG | + | tig0031250:39211-39230 | Msa1445950:intron | 40.0% | |
GCAAAGTTAGTTGCATCCAA+TGG | + | tig0031250:39349-39368 | Msa1445950:CDS | 40.0% | |
CAGCGATAATTCCAACTTAG+TGG | + | tig0031250:39728-39747 | Msa1445950:intron | 40.0% | |
CAAACAGAACGGATGAAACT+AGG | - | tig0031250:40112-40131 | None:intergenic | 40.0% | |
AAATAACGAAGCCACATGTG+AGG | - | tig0031250:40171-40190 | None:intergenic | 40.0% | |
TGGTTCGAAATTCAATACCC+GGG | - | tig0031250:40303-40322 | None:intergenic | 40.0% | |
AAACCTAGGAGGAAATGAAG+CGG | + | tig0031250:40630-40649 | Msa1445950:intron | 40.0% | |
! | AATGAAGCGGTTTGTTTCCA+AGG | + | tig0031250:40643-40662 | Msa1445950:CDS | 40.0% |
TCTCATAAGATTCACCACCT+TGG | - | tig0031250:40663-40682 | None:intergenic | 40.0% | |
!!! | GAGAGGAAATGCTGTTTTCT+TGG | + | tig0031250:40681-40700 | Msa1445950:CDS | 40.0% |
!!! | GAAATGCTGTTTTCTTGGCA+AGG | + | tig0031250:40686-40705 | Msa1445950:CDS | 40.0% |
AACAAGACACAGGTGCAATA+AGG | - | tig0031250:40864-40883 | None:intergenic | 40.0% | |
! | GGAATGACCTTTTACCAGAT+TGG | + | tig0031250:40891-40910 | Msa1445950:intron | 40.0% |
GAGTGTGATAAATCCCAATC+TGG | - | tig0031250:40908-40927 | None:intergenic | 40.0% | |
GACATTCTGAATAGCTAAGG+TGG | + | tig0031250:41005-41024 | Msa1445950:intron | 40.0% | |
CAAACACTGCATTCTACCAA+GGG | - | tig0031250:41238-41257 | None:intergenic | 40.0% | |
TCAAACACTGCATTCTACCA+AGG | - | tig0031250:41239-41258 | None:intergenic | 40.0% | |
GTAGAATGCAGTGTTTGACA+AGG | + | tig0031250:41241-41260 | Msa1445950:CDS | 40.0% | |
GCATTGCATGTATCAATCTG+TGG | - | tig0031250:41635-41654 | None:intergenic | 40.0% | |
TGCAATGCATACTACTGTGA+TGG | + | tig0031250:41647-41666 | Msa1445950:CDS | 40.0% | |
TGAGGGATGTTTGTCAATAG+TGG | + | tig0031250:41768-41787 | Msa1445950:intron | 40.0% | |
! | TCTGCCACTGTAGCATTTTA+AGG | + | tig0031250:41908-41927 | Msa1445950:intron | 40.0% |
! | CTGCCACTGTAGCATTTTAA+GGG | + | tig0031250:41909-41928 | Msa1445950:intron | 40.0% |
! | TGCCACTGTAGCATTTTAAG+GGG | + | tig0031250:41910-41929 | Msa1445950:intron | 40.0% |
CATAAGAGCAAAGTAGGCAA+TGG | - | tig0031250:41960-41979 | None:intergenic | 40.0% | |
GTGAGTGGAAGTAGTATACA+AGG | + | tig0031250:42065-42084 | Msa1445950:intron | 40.0% | |
GTGCATGCTCACAAGTTATT+TGG | + | tig0031250:42170-42189 | Msa1445950:intron | 40.0% | |
!! | TTTTGAAGGTACACACAGTG+GGG | + | tig0031250:42238-42257 | Msa1445950:intron | 40.0% |
! | GTGTTTCTATTCTATCACCG+GGG | + | tig0031250:42791-42810 | Msa1445950:intron | 40.0% |
TGCAAAAGGGGCAATACTTA+GGG | - | tig0031250:42941-42960 | None:intergenic | 40.0% | |
GAAAATGCGAAAGGCCATTA+CGG | + | tig0031250:43105-43124 | Msa1445950:intron | 40.0% | |
AAAATGCGAAAGGCCATTAC+GGG | + | tig0031250:43106-43125 | Msa1445950:intron | 40.0% | |
TTATGCCTCTATTCCCGTAA+TGG | - | tig0031250:43122-43141 | None:intergenic | 40.0% | |
GGCATAAGCAAAAAAGTTGG+AGG | + | tig0031250:43135-43154 | Msa1445950:intron | 40.0% | |
!!! | TTTACAAGCCGTTTTTGTGG+GGG | - | tig0031250:43183-43202 | None:intergenic | 40.0% |
!!! | CTTTACAAGCCGTTTTTGTG+GGG | - | tig0031250:43184-43203 | None:intergenic | 40.0% |
!!! | CACTTTACAAGCCGTTTTTG+TGG | - | tig0031250:43186-43205 | None:intergenic | 40.0% |
! | CACTTTTAACCACACTGTTC+AGG | + | tig0031250:43218-43237 | Msa1445950:intron | 40.0% |
GGCCATATCATTATCCAATG+TGG | + | tig0031250:43239-43258 | Msa1445950:intron | 40.0% | |
!! | TGTCGCTTTAAAATGGGTAG+TGG | - | tig0031250:43278-43297 | None:intergenic | 40.0% |
AATCTCAAACTGACACACAG+TGG | - | tig0031250:43489-43508 | None:intergenic | 40.0% | |
GTGGGTATATGAGTTATCTG+TGG | + | tig0031250:43565-43584 | Msa1445950:intron | 40.0% | |
GATGCTCCAATTGATGAGTA+TGG | + | tig0031250:43686-43705 | Msa1445950:CDS | 40.0% | |
TCTGCTGAATGAGCCAAAAT+GGG | + | tig0031250:43821-43840 | Msa1445950:CDS | 40.0% | |
!! | TCTTTCAAGTGACCCCATTT+TGG | - | tig0031250:43837-43856 | None:intergenic | 40.0% |
AGTGATTGCAAAAGTCATGG+AGG | + | tig0031250:43987-44006 | Msa1445950:intron | 40.0% | |
AATCGTACGAGATAAATGGG+TGG | + | tig0031250:44324-44343 | Msa1445950:intron | 40.0% | |
ATTTCAGGCACATGTATACC+AGG | + | tig0031250:44351-44370 | Msa1445950:intron | 40.0% | |
GAGACAAGTTCAATCCTTCA+CGG | - | tig0031250:44387-44406 | None:intergenic | 40.0% | |
TACGTTCATCAATGTTGGCA+AGG | - | tig0031250:44441-44460 | None:intergenic | 40.0% | |
AGACATACACTTTACCACCA+TGG | + | tig0031250:44488-44507 | Msa1445950:CDS | 40.0% | |
!! | CTGCTAAGGTTAGTTTATGC+AGG | + | tig0031250:44554-44573 | Msa1445950:CDS | 40.0% |
AAGAAGAACAAGAACGGTGG+TGG | + | tig0031250:38315-38334 | Msa1445950:CDS | 45.0% | |
TGATCGTAGGTGACGTTGAA+CGG | - | tig0031250:38433-38452 | None:intergenic | 45.0% | |
TGTTGGACAGAGCAAGAACA+AGG | - | tig0031250:38820-38839 | None:intergenic | 45.0% | |
TGGCAGCTAAAGACAGCAAA+TGG | - | tig0031250:38969-38988 | None:intergenic | 45.0% | |
! | TTGGCCTTTGCTATGAGATC+AGG | - | tig0031250:39111-39130 | None:intergenic | 45.0% |
TGATCTCATAGCAAAGGCCA+AGG | + | tig0031250:39110-39129 | Msa1445950:CDS | 45.0% | |
TACATCTACACCACCTTCCT+TGG | - | tig0031250:39130-39149 | None:intergenic | 45.0% | |
CACATGCATAAGGGCCTATA+CGG | - | tig0031250:39390-39409 | None:intergenic | 45.0% | |
TGAGGCTTGGAACACAAGTA+AGG | - | tig0031250:39598-39617 | None:intergenic | 45.0% | |
CTTGTGTTCCAAGCCTCATA+AGG | + | tig0031250:39600-39619 | Msa1445950:intron | 45.0% | |
!! | TTTCGACTGCAGCTTGCTAA+TGG | + | tig0031250:39870-39889 | Msa1445950:intron | 45.0% |
GGTTATCTTGTCCTCACATG+TGG | + | tig0031250:40157-40176 | Msa1445950:intron | 45.0% | |
TTTGCGAGCTATGTTTGCAG+TGG | + | tig0031250:40253-40272 | Msa1445950:intron | 45.0% | |
CTATGTTTGCAGTGGTTTCC+CGG | + | tig0031250:40261-40280 | Msa1445950:intron | 45.0% | |
AAACCGCTTCATTTCCTCCT+AGG | - | tig0031250:40636-40655 | None:intergenic | 45.0% | |
GGTGGTGAATCTTATGAGAG+AGG | + | tig0031250:40664-40683 | Msa1445950:CDS | 45.0% | |
!!! | ATGCTGTTTTCTTGGCAAGG+TGG | + | tig0031250:40689-40708 | Msa1445950:CDS | 45.0% |
! | TTTTCCTGGGATACCCCAAT+AGG | - | tig0031250:40813-40832 | None:intergenic | 45.0% |
CTCTTTGCCTTCATTGCCAT+AGG | - | tig0031250:41319-41338 | None:intergenic | 45.0% | |
! | TTTTGGACAGAGAACTGGGA+TGG | + | tig0031250:41701-41720 | Msa1445950:CDS | 45.0% |
AAATGCTACAGTGGCAGATC+AGG | - | tig0031250:41906-41925 | None:intergenic | 45.0% | |
AGCCCCTTAAAATGCTACAG+TGG | - | tig0031250:41915-41934 | None:intergenic | 45.0% | |
!! | GTAGCATTTTAAGGGGCTAG+TGG | + | tig0031250:41917-41936 | Msa1445950:intron | 45.0% |
AAGTAGGCAATGGCAGAACA+TGG | - | tig0031250:41950-41969 | None:intergenic | 45.0% | |
AGGTCTTCAACAGGTCTATG+AGG | - | tig0031250:42274-42293 | None:intergenic | 45.0% | |
GCAAATGCAAGGTCTTCAAC+AGG | - | tig0031250:42283-42302 | None:intergenic | 45.0% | |
TTATGACTGGCAGATTCTCG+TGG | + | tig0031250:42413-42432 | Msa1445950:intron | 45.0% | |
CAATGTTGTGAAGCCTGTCA+TGG | - | tig0031250:42559-42578 | None:intergenic | 45.0% | |
CAAAAGGGGCAATACTTAGG+GGG | - | tig0031250:42939-42958 | None:intergenic | 45.0% | |
GCAAAAGGGGCAATACTTAG+GGG | - | tig0031250:42940-42959 | None:intergenic | 45.0% | |
CTGCAAAAGGGGCAATACTT+AGG | - | tig0031250:42942-42961 | None:intergenic | 45.0% | |
! | GTATTGCCCCTTTTGCAGTT+TGG | + | tig0031250:42944-42963 | Msa1445950:intron | 45.0% |
! | TGGTGGACCAAACTGCAAAA+GGG | - | tig0031250:42954-42973 | None:intergenic | 45.0% |
!! | TGACTTGGTCAAAATTGGCC+TGG | - | tig0031250:42974-42993 | None:intergenic | 45.0% |
AAAGGCCATTACGGGAATAG+AGG | + | tig0031250:43114-43133 | Msa1445950:intron | 45.0% | |
!!! | TTACAAGCCGTTTTTGTGGG+GGG | - | tig0031250:43182-43201 | None:intergenic | 45.0% |
ATGATATGGCCTGAACAGTG+TGG | - | tig0031250:43230-43249 | None:intergenic | 45.0% | |
!! | ACAAATTTTGGCCGCACTTC+AGG | + | tig0031250:43632-43651 | Msa1445950:CDS | 45.0% |
!! | CAAATTTTGGCCGCACTTCA+GGG | + | tig0031250:43633-43652 | Msa1445950:CDS | 45.0% |
!! | AAATTTTGGCCGCACTTCAG+GGG | + | tig0031250:43634-43653 | Msa1445950:CDS | 45.0% |
GTCTGCTGAATGAGCCAAAA+TGG | + | tig0031250:43820-43839 | Msa1445950:CDS | 45.0% | |
CTGCTGAATGAGCCAAAATG+GGG | + | tig0031250:43822-43841 | Msa1445950:CDS | 45.0% | |
AAAACTGGGTTCAAAGCAGG+AGG | + | tig0031250:43920-43939 | Msa1445950:CDS | 45.0% | |
ACAAGTTCAATCCTTCACGG+TGG | - | tig0031250:44384-44403 | None:intergenic | 45.0% | |
AGTGTATGTCTGACCACGAA+AGG | - | tig0031250:44479-44498 | None:intergenic | 45.0% | |
AATATGCTCACAGACCATGG+TGG | - | tig0031250:44505-44524 | None:intergenic | 45.0% | |
TGAGCATATTGCCAGATTGC+AGG | + | tig0031250:44515-44534 | Msa1445950:CDS | 45.0% | |
AAAATCGCACTCCTGCAATC+TGG | - | tig0031250:44529-44548 | None:intergenic | 45.0% | |
!! | TATTATTAAAAAAACAAAAA+AGG | + | tig0031250:41518-41537 | Msa1445950:intron | 5.0% |
!! | TTAAAAAATATTATTATATC+AGG | + | tig0031250:42019-42038 | Msa1445950:intron | 5.0% |
! | GAACGGTGGTGGTATTCACA+TGG | + | tig0031250:38326-38345 | Msa1445950:CDS | 50.0% |
! | GATGAGAGCACGATGATCGT+AGG | - | tig0031250:38446-38465 | None:intergenic | 50.0% |
CATCGTGCTCTCATCATCGA+CGG | + | tig0031250:38451-38470 | Msa1445950:CDS | 50.0% | |
CTGTCCAACATGAACAACCG+TGG | + | tig0031250:38830-38849 | Msa1445950:intron | 50.0% | |
TGCTGTCTTTAGCTGCCAAG+TGG | + | tig0031250:38971-38990 | Msa1445950:intron | 50.0% | |
GTGGCCTGATCTCATAGCAA+AGG | + | tig0031250:39104-39123 | Msa1445950:CDS | 50.0% | |
CTCATAGCAAAGGCCAAGGA+AGG | + | tig0031250:39114-39133 | Msa1445950:CDS | 50.0% | |
ATAGCAAAGGCCAAGGAAGG+TGG | + | tig0031250:39117-39136 | Msa1445950:CDS | 50.0% | |
AATGGGCACCAGCCTGTTAA+AGG | + | tig0031250:39171-39190 | Msa1445950:CDS | 50.0% | |
TGACCTGTCCTTTAACAGGC+TGG | - | tig0031250:39182-39201 | None:intergenic | 50.0% | |
TCCACTCGGCACATGCATAA+GGG | - | tig0031250:39399-39418 | None:intergenic | 50.0% | |
TTCCACTCGGCACATGCATA+AGG | - | tig0031250:39400-39419 | None:intergenic | 50.0% | |
! | GAAGCGGTTTGTTTCCAAGG+TGG | + | tig0031250:40646-40665 | Msa1445950:CDS | 50.0% |
! | TAGTCCTATTGGGGTATCCC+AGG | + | tig0031250:40806-40825 | Msa1445950:intron | 50.0% |
GTTGAACTTGATGCGTCCCT+TGG | + | tig0031250:41219-41238 | Msa1445950:CDS | 50.0% | |
CATTGCCATAGGAGCTCTCA+AGG | - | tig0031250:41308-41327 | None:intergenic | 50.0% | |
GAGAGCTCCTATGGCAATGA+AGG | + | tig0031250:41309-41328 | Msa1445950:CDS | 50.0% | |
CGTTAAATGGGCAGCTAGCA+TGG | + | tig0031250:41341-41360 | Msa1445950:CDS | 50.0% | |
!! | GCTAGCATGGCTCTAAGTCT+TGG | + | tig0031250:41354-41373 | Msa1445950:CDS | 50.0% |
!! | ATGGCTCTAAGTCTTGGTGC+TGG | + | tig0031250:41360-41379 | Msa1445950:CDS | 50.0% |
!! | TCTTGGTGCTGGTGTTCCAT+GGG | + | tig0031250:41371-41390 | Msa1445950:CDS | 50.0% |
GGAAGCAGCGACTTTGGTAA+AGG | - | tig0031250:41885-41904 | None:intergenic | 50.0% | |
AGATCAGGAAGCAGCGACTT+TGG | - | tig0031250:41891-41910 | None:intergenic | 50.0% | |
TTCGTGTGTGTGTGTGTGTG+TGG | + | tig0031250:42145-42164 | Msa1445950:intron | 50.0% | |
AACGCGCAACAGCAAATGCA+AGG | - | tig0031250:42294-42313 | None:intergenic | 50.0% | |
TTTGAAGACTTCCTCCACGC+TGG | - | tig0031250:42321-42340 | None:intergenic | 50.0% | |
AAAATTGGCGTTGTGGCCTG+TGG | + | tig0031250:42492-42511 | Msa1445950:intron | 50.0% | |
TCTGCCATGCCATATCACCA+TGG | + | tig0031250:42528-42547 | Msa1445950:intron | 50.0% | |
ATGGTGGCACCATGGTGATA+TGG | - | tig0031250:42540-42559 | None:intergenic | 50.0% | |
TGTTGTGAAGCCTGTCATGG+TGG | - | tig0031250:42556-42575 | None:intergenic | 50.0% | |
GGTGGACCAAACTGCAAAAG+GGG | - | tig0031250:42953-42972 | None:intergenic | 50.0% | |
! | CTGGTGGACCAAACTGCAAA+AGG | - | tig0031250:42955-42974 | None:intergenic | 50.0% |
! | CTTTTGCAGTTTGGTCCACC+AGG | + | tig0031250:42953-42972 | Msa1445950:intron | 50.0% |
! | CTTGGTCAAAATTGGCCTGG+TGG | - | tig0031250:42971-42990 | None:intergenic | 50.0% |
TCTGTGGCCTGCATCTTAAC+AGG | + | tig0031250:43581-43600 | Msa1445950:intron | 50.0% | |
!! | AATTTTGGCCGCACTTCAGG+GGG | + | tig0031250:43635-43654 | Msa1445950:CDS | 50.0% |
! | CTTCACGGTGGACATTTTCC+TGG | - | tig0031250:44372-44391 | None:intergenic | 50.0% |
CAGGAAAATGTCCACCGTGA+AGG | + | tig0031250:44370-44389 | Msa1445950:CDS | 50.0% | |
GGCAATATGCTCACAGACCA+TGG | - | tig0031250:44508-44527 | None:intergenic | 50.0% | |
AAGCAGAAGCAGAAGCAGCG+TGG | + | tig0031250:38401-38420 | Msa1445950:CDS | 55.0% | |
AAAATACCTCGGGAGTGGCG+CGG | - | tig0031250:38516-38535 | None:intergenic | 55.0% | |
GCACCAGCCTGTTAAAGGAC+AGG | + | tig0031250:39176-39195 | Msa1445950:CDS | 55.0% | |
GGCTGCCTGCCAAGATAGTA+AGG | - | tig0031250:39219-39238 | None:intergenic | 55.0% | |
GCATGTGCCGAGTGGAACTT+CGG | + | tig0031250:39403-39422 | Msa1445950:CDS | 55.0% | |
CATGTGCCGAGTGGAACTTC+GGG | + | tig0031250:39404-39423 | Msa1445950:CDS | 55.0% | |
GAGAGACCCGAAGTTCCACT+CGG | - | tig0031250:39413-39432 | None:intergenic | 55.0% | |
ACAAGGCGAGAGGACTCCAT+AGG | - | tig0031250:39831-39850 | None:intergenic | 55.0% | |
TTTGCAGTGGTTTCCCGGTG+TGG | + | tig0031250:40266-40285 | Msa1445950:intron | 55.0% | |
GGATATCACGCAACCACACC+GGG | - | tig0031250:40282-40301 | None:intergenic | 55.0% | |
GGGATATCACGCAACCACAC+CGG | - | tig0031250:40283-40302 | None:intergenic | 55.0% | |
GGTGTGGTTGCGTGATATCC+CGG | + | tig0031250:40282-40301 | Msa1445950:CDS | 55.0% | |
GTGTGGTTGCGTGATATCCC+GGG | + | tig0031250:40283-40302 | Msa1445950:CDS | 55.0% | |
GGGAACCTTGAGAGCTCCTA+TGG | + | tig0031250:41300-41319 | Msa1445950:CDS | 55.0% | |
!! | GTCTTGGTGCTGGTGTTCCA+TGG | + | tig0031250:41370-41389 | Msa1445950:CDS | 55.0% |
GGTTGCTTGCACATGACCCA+TGG | - | tig0031250:41390-41409 | None:intergenic | 55.0% | |
GGACAGAGAACTGGGATGGA+TGG | + | tig0031250:41705-41724 | Msa1445950:CDS | 55.0% | |
!!! | GTTGCGCGTTTTTTCCAGCG+TGG | + | tig0031250:42304-42323 | Msa1445950:CDS | 55.0% |
! | TATGGTTTGCGATGGCGCTG+TGG | + | tig0031250:42459-42478 | Msa1445950:intron | 55.0% |
ATGGCATGGCAGATCTGTGC+CGG | - | tig0031250:42521-42540 | None:intergenic | 55.0% | |
GGCACCATGGTGATATGGCA+TGG | - | tig0031250:42535-42554 | None:intergenic | 55.0% | |
AAGGGGCAATACTTAGGGGG+CGG | - | tig0031250:42936-42955 | None:intergenic | 55.0% | |
! | GCGTCACGTCAGCTTTGACT+TGG | - | tig0031250:42989-43008 | None:intergenic | 55.0% |
GCTTTGTGAGCCTGCTCTAG+TGG | + | tig0031250:43875-43894 | Msa1445950:CDS | 55.0% | |
GAATCAGCAGCCACTAGAGC+AGG | - | tig0031250:43888-43907 | None:intergenic | 55.0% | |
GCAGCAACTGTGACCTTTCG+TGG | + | tig0031250:44463-44482 | Msa1445950:CDS | 55.0% | |
AAATACCTCGGGAGTGGCGC+GGG | - | tig0031250:38515-38534 | None:intergenic | 60.0% | |
GCCCTTATGCATGTGCCGAG+TGG | + | tig0031250:39395-39414 | Msa1445950:CDS | 60.0% | |
!!! | GCGCGTTTTTTCCAGCGTGG+AGG | + | tig0031250:42307-42326 | Msa1445950:CDS | 60.0% |
!! | AGATCTGTGCCGGCTACCAC+AGG | - | tig0031250:42511-42530 | None:intergenic | 60.0% |
!! | CACCATGGTGCCACCATGAC+AGG | + | tig0031250:42543-42562 | Msa1445950:intron | 60.0% |
AGCCTGTCATGGTGGCACCA+TGG | - | tig0031250:42548-42567 | None:intergenic | 60.0% | |
CGGCGGAGATGAGCATGCGA+CGG | - | tig0031250:38480-38499 | None:intergenic | 65.0% | |
CGTCGCATGCTCATCTCCGC+CGG | + | tig0031250:38478-38497 | Msa1445950:CDS | 65.0% | |
GCGGGGATAGTGAATGCCGG+CGG | - | tig0031250:38497-38516 | None:intergenic | 65.0% | |
GGCGCGGGGATAGTGAATGC+CGG | - | tig0031250:38500-38519 | None:intergenic | 65.0% | |
AATACCTCGGGAGTGGCGCG+GGG | - | tig0031250:38514-38533 | None:intergenic | 65.0% | |
GCGTTGTGGCCTGTGGTAGC+CGG | + | tig0031250:42499-42518 | Msa1445950:intron | 65.0% | |
GCAAGGGTCCCCCTGAAGTG+CGG | - | tig0031250:43646-43665 | None:intergenic | 65.0% | |
CTATCCCCGCGCCACTCCCG+AGG | + | tig0031250:38507-38526 | Msa1445950:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0031250 | gene | 38271 | 44660 | 38271 | ID=Msa1445950;Name=Msa1445950 |
tig0031250 | mRNA | 38271 | 44660 | 38271 | ID=Msa1445950-mRNA-1;Parent=Msa1445950;Name=Msa1445950-mRNA-1;_AED=0.06;_eAED=0.13;_QI=0|0.9|0.72|1|1|1|11|0|518 |
tig0031250 | exon | 38271 | 38528 | 38271 | ID=Msa1445950-mRNA-1:exon:15199;Parent=Msa1445950-mRNA-1 |
tig0031250 | exon | 39102 | 39197 | 39102 | ID=Msa1445950-mRNA-1:exon:15200;Parent=Msa1445950-mRNA-1 |
tig0031250 | exon | 39313 | 39425 | 39313 | ID=Msa1445950-mRNA-1:exon:15201;Parent=Msa1445950-mRNA-1 |
tig0031250 | exon | 40273 | 40339 | 40273 | ID=Msa1445950-mRNA-1:exon:15202;Parent=Msa1445950-mRNA-1 |
tig0031250 | exon | 40638 | 40730 | 40638 | ID=Msa1445950-mRNA-1:exon:15203;Parent=Msa1445950-mRNA-1 |
tig0031250 | exon | 41210 | 41428 | 41210 | ID=Msa1445950-mRNA-1:exon:15204;Parent=Msa1445950-mRNA-1 |
tig0031250 | exon | 41638 | 41726 | 41638 | ID=Msa1445950-mRNA-1:exon:15205;Parent=Msa1445950-mRNA-1 |
tig0031250 | exon | 42246 | 42351 | 42246 | ID=Msa1445950-mRNA-1:exon:15206;Parent=Msa1445950-mRNA-1 |
tig0031250 | exon | 43620 | 43707 | 43620 | ID=Msa1445950-mRNA-1:exon:15207;Parent=Msa1445950-mRNA-1 |
tig0031250 | exon | 43820 | 43941 | 43820 | ID=Msa1445950-mRNA-1:exon:15208;Parent=Msa1445950-mRNA-1 |
tig0031250 | exon | 44358 | 44660 | 44358 | ID=Msa1445950-mRNA-1:exon:15209;Parent=Msa1445950-mRNA-1 |
tig0031250 | CDS | 38271 | 38528 | 38271 | ID=Msa1445950-mRNA-1:cds;Parent=Msa1445950-mRNA-1 |
tig0031250 | CDS | 39102 | 39197 | 39102 | ID=Msa1445950-mRNA-1:cds;Parent=Msa1445950-mRNA-1 |
tig0031250 | CDS | 39313 | 39425 | 39313 | ID=Msa1445950-mRNA-1:cds;Parent=Msa1445950-mRNA-1 |
tig0031250 | CDS | 40273 | 40339 | 40273 | ID=Msa1445950-mRNA-1:cds;Parent=Msa1445950-mRNA-1 |
tig0031250 | CDS | 40638 | 40730 | 40638 | ID=Msa1445950-mRNA-1:cds;Parent=Msa1445950-mRNA-1 |
tig0031250 | CDS | 41210 | 41428 | 41210 | ID=Msa1445950-mRNA-1:cds;Parent=Msa1445950-mRNA-1 |
tig0031250 | CDS | 41638 | 41726 | 41638 | ID=Msa1445950-mRNA-1:cds;Parent=Msa1445950-mRNA-1 |
tig0031250 | CDS | 42246 | 42351 | 42246 | ID=Msa1445950-mRNA-1:cds;Parent=Msa1445950-mRNA-1 |
tig0031250 | CDS | 43620 | 43707 | 43620 | ID=Msa1445950-mRNA-1:cds;Parent=Msa1445950-mRNA-1 |
tig0031250 | CDS | 43820 | 43941 | 43820 | ID=Msa1445950-mRNA-1:cds;Parent=Msa1445950-mRNA-1 |
tig0031250 | CDS | 44358 | 44660 | 44358 | ID=Msa1445950-mRNA-1:cds;Parent=Msa1445950-mRNA-1 |
Gene Sequence |
Protein sequence |