Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1191890 | sp|P36428|SYA_ARATH | 87.281 | 228 | 29 | 0 | 38 | 265 | 47 | 274 | 7.12e-148 | 441 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1191890 | A0A396IBC8 | 96.981 | 265 | 8 | 0 | 1 | 265 | 1 | 265 | 0.0 | 560 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054730 | Msa1191890 | 0.818668 | 1.737935e-52 | -8.615850e-47 |
| Msa0058210 | Msa1191890 | 0.809119 | 2.214684e-50 | -8.615850e-47 |
| Msa0091250 | Msa1191890 | 0.843336 | 1.491712e-58 | -8.615850e-47 |
| Msa0607340 | Msa1191890 | 0.819874 | 9.236267e-53 | -8.615850e-47 |
| Msa0661190 | Msa1191890 | 0.868480 | 6.328952e-66 | -8.615850e-47 |
| Msa0744170 | Msa1191890 | 0.805773 | 1.135462e-49 | -8.615850e-47 |
| Msa0137710 | Msa1191890 | 0.810396 | 1.176785e-50 | -8.615850e-47 |
| Msa0183300 | Msa1191890 | 0.800931 | 1.143021e-48 | -8.615850e-47 |
| Msa0209500 | Msa1191890 | -0.800735 | 1.253628e-48 | -8.615850e-47 |
| Msa0229490 | Msa1191890 | 0.819049 | 1.424357e-52 | -8.615850e-47 |
| Msa0457510 | Msa1191890 | -0.802576 | 5.253543e-49 | -8.615850e-47 |
| Msa0460400 | Msa1191890 | 0.835015 | 2.145769e-56 | -8.615850e-47 |
| Msa1043250 | Msa1191890 | 0.816757 | 4.691860e-52 | -8.615850e-47 |
| Msa1100240 | Msa1191890 | 0.820835 | 5.560802e-53 | -8.615850e-47 |
| Msa0306210 | Msa1191890 | 0.811893 | 5.575683e-51 | -8.615850e-47 |
| Msa1121450 | Msa1191890 | 0.831616 | 1.509283e-55 | -8.615850e-47 |
| Msa1163650 | Msa1191890 | 0.809952 | 1.467350e-50 | -8.615850e-47 |
| Msa1191470 | Msa1191890 | 0.805638 | 1.211908e-49 | -8.615850e-47 |
| Msa1191890 | Msa1201430 | 0.807248 | 5.546712e-50 | -8.615850e-47 |
| Msa1191890 | Msa1254370 | 0.801290 | 9.652770e-49 | -8.615850e-47 |
| Msa1191890 | Msa1294610 | 0.833088 | 6.518964e-56 | -8.615850e-47 |
| Msa1191890 | Msa1332040 | 0.836020 | 1.195083e-56 | -8.615850e-47 |
| Msa1191890 | Msa1376090 | 0.806030 | 1.002679e-49 | -8.615850e-47 |
| Msa1191890 | Msa1403340 | -0.805866 | 1.085400e-49 | -8.615850e-47 |
| Msa1191890 | Msa1445950 | 0.811333 | 7.376950e-51 | -8.615850e-47 |
| Msa1191890 | Msa1449340 | 0.819325 | 1.232613e-52 | -8.615850e-47 |
| Msa1191890 | Msa1453780 | 0.850199 | 1.981579e-60 | -8.615850e-47 |
| Msa0528020 | Msa1191890 | 0.835152 | 1.981365e-56 | -8.615850e-47 |
| Msa0563260 | Msa1191890 | 0.830524 | 2.798342e-55 | -8.615850e-47 |
| Msa0586520 | Msa1191890 | 0.813812 | 2.117752e-51 | -8.615850e-47 |
| Msa0867520 | Msa1191890 | 0.805466 | 1.317249e-49 | -8.615850e-47 |
| Msa0942550 | Msa1191890 | 0.824284 | 8.771800e-54 | -8.615850e-47 |
| Msa0942560 | Msa1191890 | 0.814100 | 1.829282e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1191890 | MtrunA17_Chr4g0038011 | 96.981 | 265 | 8 | 0 | 1 | 265 | 1 | 265 | 0.0 | 560 |
| Msa1191890 | MtrunA17_Chr4g0038031 | 86.726 | 226 | 30 | 0 | 40 | 265 | 1 | 226 | 2.89e-153 | 441 |
| Msa1191890 | MtrunA17_Chr3g0145961 | 41.784 | 213 | 104 | 5 | 55 | 265 | 86 | 280 | 1.73e-47 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1191890 | AT1G50200.1 | 87.281 | 228 | 29 | 0 | 38 | 265 | 47 | 274 | 7.24e-149 | 441 |
| Msa1191890 | AT1G50200.2 | 87.281 | 228 | 29 | 0 | 38 | 265 | 47 | 274 | 7.69e-149 | 441 |
| Msa1191890 | AT5G22800.2 | 43.925 | 214 | 99 | 6 | 55 | 265 | 108 | 303 | 1.14e-47 | 169 |
| Msa1191890 | AT5G22800.1 | 43.925 | 214 | 99 | 6 | 55 | 265 | 83 | 278 | 1.16e-47 | 169 |
Find 78 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCATTTATGCCACATATTT+TGG | 0.088781 | 8_1:-36759232 | Msa1191890:CDS |
| CCTGGACGCGTTCTTCCTTT+TGG | 0.197824 | 8_1:-36759142 | Msa1191890:CDS |
| CACCAGCTCGAATGCACTTT+TGG | 0.230089 | 8_1:+36760063 | None:intergenic |
| ATATCTCTAGCCTCAGTATC+AGG | 0.242247 | 8_1:+36759184 | None:intergenic |
| ATGGAACCTCGTCTTTATTC+AGG | 0.291356 | 8_1:-36758336 | None:intergenic |
| CAACCGGGATGCTGCATCTT+TGG | 0.297241 | 8_1:-36758390 | Msa1191890:CDS |
| AGTTTGCTCAAGGCGGTATT+GGG | 0.311900 | 8_1:+36760104 | None:intergenic |
| TCTTTGAGATGTTAGGTAAC+TGG | 0.336497 | 8_1:-36759989 | Msa1191890:CDS |
| ATCCTACATGCCTCGAGATA+TGG | 0.336552 | 8_1:-36758355 | Msa1191890:CDS |
| GGCGGAGGAGACGGCGGAGG+TGG | 0.364467 | 8_1:+36760795 | None:intergenic |
| AAGAGAAGAATCATGTATAC+TGG | 0.368267 | 8_1:-36760699 | Msa1191890:CDS |
| CACACCTTCTTTGAGATGTT+AGG | 0.392733 | 8_1:-36759996 | Msa1191890:CDS |
| GAGTTTGCTCAAGGCGGTAT+TGG | 0.413067 | 8_1:+36760103 | None:intergenic |
| TCAAAGAAGAAGCCATTAGC+TGG | 0.439122 | 8_1:-36759950 | Msa1191890:CDS |
| ATTGAAGGGGACGACGGGAC+TGG | 0.442727 | 8_1:+36760672 | None:intergenic |
| ATACTGAGGCTAGAGATATA+TGG | 0.447714 | 8_1:-36759180 | Msa1191890:CDS |
| ATGTTAGGTAACTGGTCCTT+TGG | 0.450932 | 8_1:-36759981 | Msa1191890:CDS |
| TAACTCCCATGCCCAGCTAA+TGG | 0.454328 | 8_1:+36759938 | None:intergenic |
| GCCGTCTCCTCCGCCATGAC+AGG | 0.455538 | 8_1:-36760787 | Msa1191890:CDS |
| TCCTGTCATGGCGGAGGAGA+CGG | 0.457461 | 8_1:+36760786 | None:intergenic |
| GAGGAGAGTAGGGTCATTGA+AGG | 0.463658 | 8_1:+36760657 | None:intergenic |
| GTGGCATAAATGCGATCTAA+AGG | 0.490572 | 8_1:+36759241 | None:intergenic |
| AAACATACTTTACATCCAAA+AGG | 0.496267 | 8_1:+36759127 | None:intergenic |
| CATGGCGGAGGAGACGGCGG+AGG | 0.507042 | 8_1:+36760792 | None:intergenic |
| GCGTTGGCGAAGAGGAGAGT+AGG | 0.508909 | 8_1:+36760646 | None:intergenic |
| GAGAGAGAAGCTACCGGCGT+TGG | 0.518104 | 8_1:+36760630 | None:intergenic |
| GGGTCATTGAAGGGGACGAC+GGG | 0.518747 | 8_1:+36760667 | None:intergenic |
| GTATCTCTGACGCGCTTCGC+CGG | 0.526015 | 8_1:+36760739 | None:intergenic |
| TTCTTTGAAGTAATCGCCAA+AGG | 0.530535 | 8_1:+36759965 | None:intergenic |
| AAGAAGCCATTAGCTGGGCA+TGG | 0.530759 | 8_1:-36759944 | Msa1191890:CDS |
| CCAAAAGGAAGAACGCGTCC+AGG | 0.534992 | 8_1:+36759142 | None:intergenic |
| TATCTCTAGCCTCAGTATCA+GGG | 0.541007 | 8_1:+36759185 | None:intergenic |
| AGGAGAGTAGGGTCATTGAA+GGG | 0.545848 | 8_1:+36760658 | None:intergenic |
| AGCTACCGGCGTTGGCGAAG+AGG | 0.546190 | 8_1:+36760638 | None:intergenic |
| AGAGGGTTGTGAATGACAAG+AGG | 0.548129 | 8_1:-36760901 | Msa1191890:exon |
| ACCCAAAAGTGCATTCGAGC+TGG | 0.549128 | 8_1:-36760065 | Msa1191890:CDS |
| CTCATCACCACCAAAATATG+TGG | 0.551078 | 8_1:+36759222 | None:intergenic |
| TCAAAATGAATTTCTGTGCA+AGG | 0.551129 | 8_1:+36758422 | None:intergenic |
| GTTACCTAACATCTCAAAGA+AGG | 0.560082 | 8_1:+36759992 | None:intergenic |
| ATGGGTGACACTGGTCCTTG+TGG | 0.566112 | 8_1:-36758446 | Msa1191890:CDS |
| TGGCCTTGCCCCTGATACTG+AGG | 0.566728 | 8_1:-36759194 | Msa1191890:CDS |
| ACTCTCCTCTTCGCCAACGC+CGG | 0.576230 | 8_1:-36760643 | Msa1191890:intron |
| ATCAGTTCCTGTCATGGCGG+AGG | 0.579820 | 8_1:+36760780 | None:intergenic |
| AGAAGCCATTAGCTGGGCAT+GGG | 0.582659 | 8_1:-36759943 | Msa1191890:CDS |
| ACATCTCAAAGAAGGTGTGA+TGG | 0.587964 | 8_1:+36760000 | None:intergenic |
| GAGTGTATCAGTTCCTGTCA+TGG | 0.589194 | 8_1:+36760774 | None:intergenic |
| TTGATATCGACGTGAGAAGA+GGG | 0.593521 | 8_1:-36760918 | Msa1191890:five_prime_UTR |
| AGCACGGGAGAGTTTGCTCA+AGG | 0.598627 | 8_1:+36760094 | None:intergenic |
| GAGATACCGTGAGAGGGTGG+CGG | 0.599144 | 8_1:+36760832 | None:intergenic |
| TAGCCTCAGTATCAGGGGCA+AGG | 0.601926 | 8_1:+36759191 | None:intergenic |
| TAACCAAAGATGCAGCATCC+CGG | 0.603690 | 8_1:+36758387 | None:intergenic |
| CAAAGAAGAAGCCATTAGCT+GGG | 0.605025 | 8_1:-36759949 | Msa1191890:CDS |
| CAAAAGTGCATTCGAGCTGG+TGG | 0.606727 | 8_1:-36760062 | Msa1191890:CDS |
| ATCTCTAGCCTCAGTATCAG+GGG | 0.608234 | 8_1:+36759186 | None:intergenic |
| GGAGAGTAGGGTCATTGAAG+GGG | 0.610058 | 8_1:+36760659 | None:intergenic |
| AGGGTCATTGAAGGGGACGA+CGG | 0.610203 | 8_1:+36760666 | None:intergenic |
| CGTTGGCGAAGAGGAGAGTA+GGG | 0.610687 | 8_1:+36760647 | None:intergenic |
| CACAATGATCTTGACGACGT+GGG | 0.612293 | 8_1:-36760035 | Msa1191890:CDS |
| TTAGCGCCGCCACCCTCTCA+CGG | 0.618261 | 8_1:-36760838 | Msa1191890:CDS |
| TTTGGTGGTGATGAGAAAGC+TGG | 0.620486 | 8_1:-36759214 | Msa1191890:CDS |
| ATTTCTGTGCAAGGTCCACA+AGG | 0.625777 | 8_1:+36758431 | None:intergenic |
| ACAATGATCTTGACGACGTG+GGG | 0.633719 | 8_1:-36760034 | Msa1191890:CDS |
| ATTGATATCGACGTGAGAAG+AGG | 0.636075 | 8_1:-36760919 | Msa1191890:five_prime_UTR |
| TTCCATATCTCGAGGCATGT+AGG | 0.636693 | 8_1:+36758353 | None:intergenic |
| TGTCATGGCGGAGGAGACGG+CGG | 0.638181 | 8_1:+36760789 | None:intergenic |
| CTCGAGATACCGTGAGAGGG+TGG | 0.639179 | 8_1:+36760829 | None:intergenic |
| GTTTGCTCAAGGCGGTATTG+GGG | 0.644495 | 8_1:+36760105 | None:intergenic |
| AGATCTCGAGATACCGTGAG+AGG | 0.654707 | 8_1:+36760825 | None:intergenic |
| GATCTCGAGATACCGTGAGA+GGG | 0.655018 | 8_1:+36760826 | None:intergenic |
| GCACAATGATCTTGACGACG+TGG | 0.658642 | 8_1:-36760036 | Msa1191890:CDS |
| CTCTTCGAAGAACTTGACGA+AGG | 0.661427 | 8_1:+36760717 | None:intergenic |
| AGACGAGGTTCCATATCTCG+AGG | 0.669081 | 8_1:+36758345 | None:intergenic |
| GCGGCGCTAATAGAGTGTTA+CGG | 0.670388 | 8_1:+36760851 | None:intergenic |
| AAAGGAAGAACGCGTCCAGG+AGG | 0.675704 | 8_1:+36759145 | None:intergenic |
| CTGATACACTCGATATCGAG+TGG | 0.683989 | 8_1:-36760762 | Msa1191890:CDS |
| ACGGGAGAGTTTGCTCAAGG+CGG | 0.709960 | 8_1:+36760097 | None:intergenic |
| TGTATCAGTTCCTGTCATGG+CGG | 0.715205 | 8_1:+36760777 | None:intergenic |
| AAAATACCTGAATAAAGACG+AGG | 0.734207 | 8_1:+36758330 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAAAAAAAAAAATA+GGG | + | chr8_1:36760395-36760414 | None:intergenic | 0.0% |
| !! | TAAAAATAAAAAAAAAAAAT+AGG | + | chr8_1:36760396-36760415 | None:intergenic | 0.0% |
| !!! | TTTTTATTTTTTTTTTGCTT+TGG | - | chr8_1:36759485-36759504 | Msa1191890:intron | 10.0% |
| !!! | AAATATAATTTTTCATCAAA+GGG | + | chr8_1:36759730-36759749 | None:intergenic | 10.0% |
| !!! | AAAATATAATTTTTCATCAA+AGG | + | chr8_1:36759731-36759750 | None:intergenic | 10.0% |
| !! | AATATTACTTTGATATTAAA+TGG | + | chr8_1:36760235-36760254 | None:intergenic | 10.0% |
| !! | AAAACAAATGAAAAATTAAA+TGG | - | chr8_1:36760692-36760711 | Msa1191890:CDS | 10.0% |
| !!! | AAATGGATTTATTTAAATAA+TGG | - | chr8_1:36760709-36760728 | Msa1191890:CDS | 10.0% |
| !!! | ATTGAAATCAACTATTTTAT+TGG | - | chr8_1:36758822-36758841 | Msa1191890:intron | 15.0% |
| !!! | TTATACTTTGTTATTGAAAT+TGG | + | chr8_1:36758864-36758883 | None:intergenic | 15.0% |
| !! | ATAGTTTAGTAAAATCATTA+TGG | - | chr8_1:36759457-36759476 | Msa1191890:intron | 15.0% |
| !! | TAGTTTAGTAAAATCATTAT+GGG | - | chr8_1:36759458-36759477 | Msa1191890:intron | 15.0% |
| !!! | TTGTTTCTTCTATATTAATT+AGG | - | chr8_1:36759589-36759608 | Msa1191890:intron | 15.0% |
| !! | TAAAAAAAAAAAATAGGGAA+AGG | + | chr8_1:36760390-36760409 | None:intergenic | 15.0% |
| !!! | TGTTTTCATATAAACTATTC+CGG | - | chr8_1:36758918-36758937 | Msa1191890:intron | 20.0% |
| !!! | TATTTTCAACTTATTTCCAT+AGG | + | chr8_1:36758948-36758967 | None:intergenic | 20.0% |
| !!! | TATGGAAATAAGTTGAAAAT+AGG | - | chr8_1:36758947-36758966 | Msa1191890:intron | 20.0% |
| !!! | AATAAGTTGAAAATAGGATA+TGG | - | chr8_1:36758953-36758972 | Msa1191890:intron | 20.0% |
| !! | TCAAATAAGTTAATACAAAG+AGG | - | chr8_1:36759042-36759061 | Msa1191890:intron | 20.0% |
| !!! | TTATGATTTTATATGTGACA+GGG | - | chr8_1:36759113-36759132 | Msa1191890:intron | 20.0% |
| !!! | ATATACTTTTATTAACAAGC+AGG | + | chr8_1:36759439-36759458 | None:intergenic | 20.0% |
| !!! | ATTCTAAACTTTAAAAGCTA+AGG | - | chr8_1:36759519-36759538 | Msa1191890:intron | 20.0% |
| !! | ATATAGAAGAAACAATCAAT+AGG | + | chr8_1:36759584-36759603 | None:intergenic | 20.0% |
| !! | GCTAAAGTTATTATGTTTAT+AGG | - | chr8_1:36759879-36759898 | Msa1191890:intron | 20.0% |
| !!! | TACATTTTCTCTTAAATATG+TGG | - | chr8_1:36760179-36760198 | Msa1191890:intron | 20.0% |
| !! | GTTAAGGAAATTAGAAAAAA+AGG | + | chr8_1:36760481-36760500 | None:intergenic | 20.0% |
| !!! | TGATTTTAAAGAAGAAAGAA+AGG | + | chr8_1:36760506-36760525 | None:intergenic | 20.0% |
| !! | TAACTTATTTGAGTTTATCC+AGG | + | chr8_1:36759034-36759053 | None:intergenic | 25.0% |
| !! | GTTATGATTTTATATGTGAC+AGG | - | chr8_1:36759112-36759131 | Msa1191890:intron | 25.0% |
| !!! | CAGTATAAGCCAATTTTTTT+GGG | - | chr8_1:36759142-36759161 | Msa1191890:CDS | 25.0% |
| !!! | AGTATAAGCCAATTTTTTTG+GGG | - | chr8_1:36759143-36759162 | Msa1191890:CDS | 25.0% |
| !! | TGCATTACTAAATTCTTTTG+TGG | - | chr8_1:36759972-36759991 | Msa1191890:CDS | 25.0% |
| ! | AAACATACTTTACATCCAAA+AGG | + | chr8_1:36760155-36760174 | None:intergenic | 25.0% |
| ! | AGTACAAATTATAACCTAGA+TGG | + | chr8_1:36760303-36760322 | None:intergenic | 25.0% |
| ! | TCTTCTTGAAAGAAAAATCT+GGG | - | chr8_1:36760357-36760376 | Msa1191890:intron | 25.0% |
| !!! | TTTTAAAGAAGAAAGAAAGG+AGG | + | chr8_1:36760503-36760522 | None:intergenic | 25.0% |
| ! | AATAGTTCATATATTCGAGA+CGG | + | chr8_1:36760619-36760638 | None:intergenic | 25.0% |
| !!! | TTTTTTTTCCAGAAAAGAAG+AGG | + | chr8_1:36760674-36760693 | None:intergenic | 25.0% |
| !!! | AAATTGTTTCTGTACTGAAT+TGG | - | chr8_1:36760764-36760783 | Msa1191890:CDS | 25.0% |
| !! | TCTTTCGATAGGATAATTTT+TGG | - | chr8_1:36760807-36760826 | Msa1191890:CDS | 25.0% |
| !! | CTTTCGATAGGATAATTTTT+GGG | - | chr8_1:36760808-36760827 | Msa1191890:CDS | 25.0% |
| !!! | GAAATTCATTTTGACAGAAT+TGG | - | chr8_1:36760866-36760885 | Msa1191890:CDS | 25.0% |
| AAGAGAAGAATCATGTATAC+TGG | - | chr8_1:36758580-36758599 | Msa1191890:intron | 30.0% | |
| ! | TCAAGTAACCAGTTAGATTT+TGG | - | chr8_1:36758732-36758751 | Msa1191890:intron | 30.0% |
| AGAATCAACCAAAATCTAAC+TGG | + | chr8_1:36758743-36758762 | None:intergenic | 30.0% | |
| ATATGAAAACAGCTTATAGC+TGG | + | chr8_1:36758909-36758928 | None:intergenic | 30.0% | |
| ! | CCAAAAAAATTGGCTTATAC+TGG | + | chr8_1:36759144-36759163 | None:intergenic | 30.0% |
| !!! | CCAGTATAAGCCAATTTTTT+TGG | - | chr8_1:36759141-36759160 | Msa1191890:CDS | 30.0% |
| CCAATTGATAAAGCATACTT+TGG | + | chr8_1:36759371-36759390 | None:intergenic | 30.0% | |
| CCAAAGTATGCTTTATCAAT+TGG | - | chr8_1:36759368-36759387 | Msa1191890:intron | 30.0% | |
| ! | AACTTTAAAAGCTAAGGAGT+AGG | - | chr8_1:36759525-36759544 | Msa1191890:intron | 30.0% |
| ATAGGAATATATCCCAGTAT+GGG | + | chr8_1:36759566-36759585 | None:intergenic | 30.0% | |
| AATAGGAATATATCCCAGTA+TGG | + | chr8_1:36759567-36759586 | None:intergenic | 30.0% | |
| AATGCACTATATATCTACTG+AGG | + | chr8_1:36759958-36759977 | None:intergenic | 30.0% | |
| CTACTTCTTTACTGTATTGT+AGG | - | chr8_1:36760004-36760023 | Msa1191890:CDS | 30.0% | |
| !! | ATTTATGCCACATATTTTGG+TGG | - | chr8_1:36760050-36760069 | Msa1191890:CDS | 30.0% |
| GGCAGACAATATTACATAAA+TGG | + | chr8_1:36760282-36760301 | None:intergenic | 30.0% | |
| ATTATTTGACTCTGCTTTGT+TGG | - | chr8_1:36760330-36760349 | Msa1191890:intron | 30.0% | |
| ! | TTATTTGACTCTGCTTTGTT+GGG | - | chr8_1:36760331-36760350 | Msa1191890:intron | 30.0% |
| CTCTTCTTGAAAGAAAAATC+TGG | - | chr8_1:36760356-36760375 | Msa1191890:intron | 30.0% | |
| CTTCTTGAAAGAAAAATCTG+GGG | - | chr8_1:36760358-36760377 | Msa1191890:intron | 30.0% | |
| ATAGTTCATATATTCGAGAC+GGG | + | chr8_1:36760618-36760637 | None:intergenic | 30.0% | |
| ! | ATGATTAACCTCTTCTTTTC+TGG | - | chr8_1:36760663-36760682 | Msa1191890:CDS | 30.0% |
| CTGAATTGGCAAATCTAATT+AGG | - | chr8_1:36760778-36760797 | Msa1191890:CDS | 30.0% | |
| TTAGGTGTTTATCTTTCGAT+AGG | - | chr8_1:36760796-36760815 | Msa1191890:CDS | 30.0% | |
| !! | ATAGGATAATTTTTGGGAGA+TGG | - | chr8_1:36760814-36760833 | Msa1191890:CDS | 30.0% |
| !! | TAGGATAATTTTTGGGAGAT+GGG | - | chr8_1:36760815-36760834 | Msa1191890:CDS | 30.0% |
| TCAAAATGAATTTCTGTGCA+AGG | + | chr8_1:36760860-36760879 | None:intergenic | 30.0% | |
| GTTACCTAACATCTCAAAGA+AGG | + | chr8_1:36759290-36759309 | None:intergenic | 35.0% | |
| !! | TCTTTGAGATGTTAGGTAAC+TGG | - | chr8_1:36759290-36759309 | Msa1191890:intron | 35.0% |
| !! | TTCTTTGAAGTAATCGCCAA+AGG | + | chr8_1:36759317-36759336 | None:intergenic | 35.0% |
| TATCCACATTTAGAAACCGA+AGG | + | chr8_1:36759809-36759828 | None:intergenic | 35.0% | |
| ! | CGCATTTATGCCACATATTT+TGG | - | chr8_1:36760047-36760066 | Msa1191890:CDS | 35.0% |
| ATACTGAGGCTAGAGATATA+TGG | - | chr8_1:36760099-36760118 | Msa1191890:CDS | 35.0% | |
| TGTAATATTGTCTGCCATCT+AGG | - | chr8_1:36760286-36760305 | Msa1191890:intron | 35.0% | |
| AGAAGAAAGAAAGGAGGTTA+AGG | + | chr8_1:36760497-36760516 | None:intergenic | 35.0% | |
| TTATGCTATGCTTGTGACAT+GGG | + | chr8_1:36760557-36760576 | None:intergenic | 35.0% | |
| ATTATGCTATGCTTGTGACA+TGG | + | chr8_1:36760558-36760577 | None:intergenic | 35.0% | |
| !! | ATTTTGACAGAATTGGCAAC+CGG | - | chr8_1:36760873-36760892 | Msa1191890:CDS | 35.0% |
| ATTGATATCGACGTGAGAAG+AGG | - | chr8_1:36758360-36758379 | Msa1191890:CDS | 40.0% | |
| TTGATATCGACGTGAGAAGA+GGG | - | chr8_1:36758361-36758380 | Msa1191890:CDS | 40.0% | |
| ACTTATTTCCATAGGCTCTC+CGG | + | chr8_1:36758940-36758959 | None:intergenic | 40.0% | |
| TTCTCACAAGTGCTTATACC+TGG | - | chr8_1:36759013-36759032 | Msa1191890:intron | 40.0% | |
| TCAGCAGTCCCCAAAAAAAT+TGG | + | chr8_1:36759154-36759173 | None:intergenic | 40.0% | |
| !! | ACTTTTGGGTATTGCAAGCA+CGG | + | chr8_1:36759204-36759223 | None:intergenic | 40.0% |
| ! | ACATCTCAAAGAAGGTGTGA+TGG | + | chr8_1:36759282-36759301 | None:intergenic | 40.0% |
| !! | CACACCTTCTTTGAGATGTT+AGG | - | chr8_1:36759283-36759302 | Msa1191890:intron | 40.0% |
| ATGTTAGGTAACTGGTCCTT+TGG | - | chr8_1:36759298-36759317 | Msa1191890:intron | 40.0% | |
| TCAAAGAAGAAGCCATTAGC+TGG | - | chr8_1:36759329-36759348 | Msa1191890:intron | 40.0% | |
| CAAAGAAGAAGCCATTAGCT+GGG | - | chr8_1:36759330-36759349 | Msa1191890:intron | 40.0% | |
| TTACTGAAGCTACCCATACT+GGG | - | chr8_1:36759551-36759570 | Msa1191890:intron | 40.0% | |
| TGTAATTGACAGGATGGAAG+TGG | + | chr8_1:36759680-36759699 | None:intergenic | 40.0% | |
| GTAAGCATGGTGTAATTGAC+AGG | + | chr8_1:36759690-36759709 | None:intergenic | 40.0% | |
| GTGGCATAAATGCGATCTAA+AGG | + | chr8_1:36760041-36760060 | None:intergenic | 40.0% | |
| CTCATCACCACCAAAATATG+TGG | + | chr8_1:36760060-36760079 | None:intergenic | 40.0% | |
| TATCTCTAGCCTCAGTATCA+GGG | + | chr8_1:36760097-36760116 | None:intergenic | 40.0% | |
| ATATCTCTAGCCTCAGTATC+AGG | + | chr8_1:36760098-36760117 | None:intergenic | 40.0% | |
| ! | TGGTTAAAGTTTTTGCCTCC+TGG | - | chr8_1:36760119-36760138 | Msa1191890:CDS | 40.0% |
| ! | TTTTGACAGAATTGGCAACC+GGG | - | chr8_1:36760874-36760893 | Msa1191890:CDS | 40.0% |
| AGAGGGTTGTGAATGACAAG+AGG | - | chr8_1:36758378-36758397 | Msa1191890:CDS | 45.0% | |
| TGTATCAGTTCCTGTCATGG+CGG | + | chr8_1:36758505-36758524 | None:intergenic | 45.0% | |
| GAGTGTATCAGTTCCTGTCA+TGG | + | chr8_1:36758508-36758527 | None:intergenic | 45.0% | |
| CTGATACACTCGATATCGAG+TGG | - | chr8_1:36758517-36758536 | Msa1191890:intron | 45.0% | |
| CTCTTCGAAGAACTTGACGA+AGG | + | chr8_1:36758565-36758584 | None:intergenic | 45.0% | |
| AGGAGAGTAGGGTCATTGAA+GGG | + | chr8_1:36758624-36758643 | None:intergenic | 45.0% | |
| AGAGAAGAGAGAGAAGCTAC+CGG | + | chr8_1:36758658-36758677 | None:intergenic | 45.0% | |
| AAACTATTCCGGAGAGCCTA+TGG | - | chr8_1:36758929-36758948 | Msa1191890:intron | 45.0% | |
| ! | AGTTTGCTCAAGGCGGTATT+GGG | + | chr8_1:36759178-36759197 | None:intergenic | 45.0% |
| !! | CTTTTGGGTATTGCAAGCAC+GGG | + | chr8_1:36759203-36759222 | None:intergenic | 45.0% |
| ! | ACCAGCTCGAATGCACTTTT+GGG | + | chr8_1:36759218-36759237 | None:intergenic | 45.0% |
| CACAATGATCTTGACGACGT+GGG | - | chr8_1:36759244-36759263 | Msa1191890:CDS | 45.0% | |
| ACAATGATCTTGACGACGTG+GGG | - | chr8_1:36759245-36759264 | Msa1191890:CDS | 45.0% | |
| GTTACTGAAGCTACCCATAC+TGG | - | chr8_1:36759550-36759569 | Msa1191890:intron | 45.0% | |
| ! | TGGTTAGCTGCAGTGAATGA+TGG | + | chr8_1:36759657-36759676 | None:intergenic | 45.0% |
| AATTGACAGGATGGAAGTGG+TGG | + | chr8_1:36759677-36759696 | None:intergenic | 45.0% | |
| GCATGGTGTAATTGACAGGA+TGG | + | chr8_1:36759686-36759705 | None:intergenic | 45.0% | |
| ATGCTTACCACTACTGCTCT+GGG | - | chr8_1:36759702-36759721 | Msa1191890:intron | 45.0% | |
| TAGAAACCGAAGGCCACATT+GGG | + | chr8_1:36759799-36759818 | None:intergenic | 45.0% | |
| TTAGAAACCGAAGGCCACAT+TGG | + | chr8_1:36759800-36759819 | None:intergenic | 45.0% | |
| TGGCCTTCGGTTTCTAAATG+TGG | - | chr8_1:36759803-36759822 | Msa1191890:intron | 45.0% | |
| !! | TTTGGTGGTGATGAGAAAGC+TGG | - | chr8_1:36760065-36760084 | Msa1191890:CDS | 45.0% |
| ATCTCTAGCCTCAGTATCAG+GGG | + | chr8_1:36760096-36760115 | None:intergenic | 45.0% | |
| TTGTGACATGGGCTTGTGAT+GGG | + | chr8_1:36760546-36760565 | None:intergenic | 45.0% | |
| ATTTCTGTGCAAGGTCCACA+AGG | + | chr8_1:36760851-36760870 | None:intergenic | 45.0% | |
| TAACCAAAGATGCAGCATCC+CGG | + | chr8_1:36760895-36760914 | None:intergenic | 45.0% | |
| ATCCTACATGCCTCGAGATA+TGG | - | chr8_1:36760924-36760943 | Msa1191890:five_prime_UTR | 45.0% | |
| TTCCATATCTCGAGGCATGT+AGG | + | chr8_1:36760929-36760948 | None:intergenic | 45.0% | |
| ! | GCGGCGCTAATAGAGTGTTA+CGG | + | chr8_1:36758431-36758450 | None:intergenic | 50.0% |
| GATCTCGAGATACCGTGAGA+GGG | + | chr8_1:36758456-36758475 | None:intergenic | 50.0% | |
| AGATCTCGAGATACCGTGAG+AGG | + | chr8_1:36758457-36758476 | None:intergenic | 50.0% | |
| TACACTCGATATCGAGTGGC+CGG | - | chr8_1:36758521-36758540 | Msa1191890:intron | 50.0% | |
| GGAGAGTAGGGTCATTGAAG+GGG | + | chr8_1:36758623-36758642 | None:intergenic | 50.0% | |
| GAGGAGAGTAGGGTCATTGA+AGG | + | chr8_1:36758625-36758644 | None:intergenic | 50.0% | |
| GTTTGCTCAAGGCGGTATTG+GGG | + | chr8_1:36759177-36759196 | None:intergenic | 50.0% | |
| ! | GAGTTTGCTCAAGGCGGTAT+TGG | + | chr8_1:36759179-36759198 | None:intergenic | 50.0% |
| ! | ACCCAAAAGTGCATTCGAGC+TGG | - | chr8_1:36759214-36759233 | Msa1191890:CDS | 50.0% |
| ! | CACCAGCTCGAATGCACTTT+TGG | + | chr8_1:36759219-36759238 | None:intergenic | 50.0% |
| ! | CAAAAGTGCATTCGAGCTGG+TGG | - | chr8_1:36759217-36759236 | Msa1191890:CDS | 50.0% |
| GCACAATGATCTTGACGACG+TGG | - | chr8_1:36759243-36759262 | Msa1191890:CDS | 50.0% | |
| AAGAAGCCATTAGCTGGGCA+TGG | - | chr8_1:36759335-36759354 | Msa1191890:intron | 50.0% | |
| AGAAGCCATTAGCTGGGCAT+GGG | - | chr8_1:36759336-36759355 | Msa1191890:intron | 50.0% | |
| TAACTCCCATGCCCAGCTAA+TGG | + | chr8_1:36759344-36759363 | None:intergenic | 50.0% | |
| CAGAGCAGTAGTGGTAAGCA+TGG | + | chr8_1:36759703-36759722 | None:intergenic | 50.0% | |
| CATGCTTACCACTACTGCTC+TGG | - | chr8_1:36759701-36759720 | Msa1191890:intron | 50.0% | |
| CTTGTGACATGGGCTTGTGA+TGG | + | chr8_1:36760547-36760566 | None:intergenic | 50.0% | |
| !! | TTTTGGGAGATGGGTGACAC+TGG | - | chr8_1:36760824-36760843 | Msa1191890:CDS | 50.0% |
| AGACGAGGTTCCATATCTCG+AGG | + | chr8_1:36760937-36760956 | None:intergenic | 50.0% | |
| ATCAGTTCCTGTCATGGCGG+AGG | + | chr8_1:36758502-36758521 | None:intergenic | 55.0% | |
| AGGGTCATTGAAGGGGACGA+CGG | + | chr8_1:36758616-36758635 | None:intergenic | 55.0% | |
| CGTTGGCGAAGAGGAGAGTA+GGG | + | chr8_1:36758635-36758654 | None:intergenic | 55.0% | |
| ! | ACGGGAGAGTTTGCTCAAGG+CGG | + | chr8_1:36759185-36759204 | None:intergenic | 55.0% |
| ! | AGCACGGGAGAGTTTGCTCA+AGG | + | chr8_1:36759188-36759207 | None:intergenic | 55.0% |
| AAGGGAACCCAGAGCAGTAG+TGG | + | chr8_1:36759712-36759731 | None:intergenic | 55.0% | |
| CTGCCAATCCCAACCCAATG+TGG | - | chr8_1:36759783-36759802 | Msa1191890:intron | 55.0% | |
| !! | AGGCCACATTGGGTTGGGAT+TGG | + | chr8_1:36759789-36759808 | None:intergenic | 55.0% |
| TCCCAACCCAATGTGGCCTT+CGG | - | chr8_1:36759790-36759809 | Msa1191890:intron | 55.0% | |
| ACCGAAGGCCACATTGGGTT+GGG | + | chr8_1:36759794-36759813 | None:intergenic | 55.0% | |
| AACCGAAGGCCACATTGGGT+TGG | + | chr8_1:36759795-36759814 | None:intergenic | 55.0% | |
| TAGCCTCAGTATCAGGGGCA+AGG | + | chr8_1:36760091-36760110 | None:intergenic | 55.0% | |
| AAAGGAAGAACGCGTCCAGG+AGG | + | chr8_1:36760137-36760156 | None:intergenic | 55.0% | |
| CCAAAAGGAAGAACGCGTCC+AGG | + | chr8_1:36760140-36760159 | None:intergenic | 55.0% | |
| ! | CCTGGACGCGTTCTTCCTTT+TGG | - | chr8_1:36760137-36760156 | Msa1191890:CDS | 55.0% |
| ! | GCTTGTGATGGGATGACGAG+GGG | + | chr8_1:36760535-36760554 | None:intergenic | 55.0% |
| ! | GGCTTGTGATGGGATGACGA+GGG | + | chr8_1:36760536-36760555 | None:intergenic | 55.0% |
| ATGGGTGACACTGGTCCTTG+TGG | - | chr8_1:36760833-36760852 | Msa1191890:CDS | 55.0% | |
| CAACCGGGATGCTGCATCTT+TGG | - | chr8_1:36760889-36760908 | Msa1191890:CDS | 55.0% | |
| GAGATACCGTGAGAGGGTGG+CGG | + | chr8_1:36758450-36758469 | None:intergenic | 60.0% | |
| CTCGAGATACCGTGAGAGGG+TGG | + | chr8_1:36758453-36758472 | None:intergenic | 60.0% | |
| ! | TCCTGTCATGGCGGAGGAGA+CGG | + | chr8_1:36758496-36758515 | None:intergenic | 60.0% |
| GTATCTCTGACGCGCTTCGC+CGG | + | chr8_1:36758543-36758562 | None:intergenic | 60.0% | |
| ATTGAAGGGGACGACGGGAC+TGG | + | chr8_1:36758610-36758629 | None:intergenic | 60.0% | |
| GGGTCATTGAAGGGGACGAC+GGG | + | chr8_1:36758615-36758634 | None:intergenic | 60.0% | |
| ! | GCGTTGGCGAAGAGGAGAGT+AGG | + | chr8_1:36758636-36758655 | None:intergenic | 60.0% |
| ACTCTCCTCTTCGCCAACGC+CGG | - | chr8_1:36758636-36758655 | Msa1191890:intron | 60.0% | |
| GAGAGAGAAGCTACCGGCGT+TGG | + | chr8_1:36758652-36758671 | None:intergenic | 60.0% | |
| ! | TGGCCTTGCCCCTGATACTG+AGG | - | chr8_1:36760085-36760104 | Msa1191890:CDS | 60.0% |
| ! | GGGCTTGTGATGGGATGACG+AGG | + | chr8_1:36760537-36760556 | None:intergenic | 60.0% |
| TTAGCGCCGCCACCCTCTCA+CGG | - | chr8_1:36758441-36758460 | Msa1191890:CDS | 65.0% | |
| ! | TGTCATGGCGGAGGAGACGG+CGG | + | chr8_1:36758493-36758512 | None:intergenic | 65.0% |
| !! | AGCTACCGGCGTTGGCGAAG+AGG | + | chr8_1:36758644-36758663 | None:intergenic | 65.0% |
| GCCGTCTCCTCCGCCATGAC+AGG | - | chr8_1:36758492-36758511 | Msa1191890:intron | 70.0% | |
| ! | CATGGCGGAGGAGACGGCGG+AGG | + | chr8_1:36758490-36758509 | None:intergenic | 75.0% |
| ! | GGCGGAGGAGACGGCGGAGG+TGG | + | chr8_1:36758487-36758506 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 36758337 | 36760964 | 36758337 | ID=Msa1191890;Name=Msa1191890 |
| chr8_1 | mRNA | 36758337 | 36760964 | 36758337 | ID=Msa1191890-mRNA-1;Parent=Msa1191890;Name=Msa1191890-mRNA-1;_AED=0.00;_eAED=0.00;_QI=53|1|0.75|1|1|1|4|0|265 |
| chr8_1 | exon | 36758337 | 36758483 | 36758337 | ID=Msa1191890-mRNA-1:exon:12112;Parent=Msa1191890-mRNA-1 |
| chr8_1 | exon | 36759135 | 36759275 | 36759135 | ID=Msa1191890-mRNA-1:exon:12111;Parent=Msa1191890-mRNA-1 |
| chr8_1 | exon | 36759929 | 36760167 | 36759929 | ID=Msa1191890-mRNA-1:exon:12110;Parent=Msa1191890-mRNA-1 |
| chr8_1 | exon | 36760644 | 36760964 | 36760644 | ID=Msa1191890-mRNA-1:exon:12109;Parent=Msa1191890-mRNA-1 |
| chr8_1 | five_prime_UTR | 36760912 | 36760964 | 36760912 | ID=Msa1191890-mRNA-1:five_prime_utr;Parent=Msa1191890-mRNA-1 |
| chr8_1 | CDS | 36760644 | 36760911 | 36760644 | ID=Msa1191890-mRNA-1:cds;Parent=Msa1191890-mRNA-1 |
| chr8_1 | CDS | 36759929 | 36760167 | 36759929 | ID=Msa1191890-mRNA-1:cds;Parent=Msa1191890-mRNA-1 |
| chr8_1 | CDS | 36759135 | 36759275 | 36759135 | ID=Msa1191890-mRNA-1:cds;Parent=Msa1191890-mRNA-1 |
| chr8_1 | CDS | 36758337 | 36758483 | 36758337 | ID=Msa1191890-mRNA-1:cds;Parent=Msa1191890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
