AlfalfaGEDB | Msa0587190

M. sativa cultivar zhongmu-4 / Msa0587190

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0587190	XP_003604408.1	96.063	127	5	0	1	127	1	127	1.16e-73	225

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0587190	-0.804662	1.939527e-49	-8.615850e-47
Msa0000550	Msa0587190	-0.803670	3.119933e-49	-8.615850e-47
Msa0003630	Msa0587190	0.806788	6.937497e-50	-8.615850e-47
Msa0005270	Msa0587190	0.868928	4.532089e-66	-8.615850e-47
Msa0006110	Msa0587190	0.809242	2.084373e-50	-8.615850e-47
Msa0007990	Msa0587190	0.802256	6.114818e-49	-8.615850e-47
Msa0008220	Msa0587190	0.824784	6.689057e-54	-8.615850e-47
Msa0010770	Msa0587190	0.825012	5.910903e-54	-8.615850e-47
Msa0014710	Msa0587190	0.810127	1.345077e-50	-8.615850e-47
Msa0015460	Msa0587190	0.806359	8.545816e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0587190	MtrunA17_Chr4g0003391	96.063	127	5	0	1	127	1	127	1.07e-77	225
Msa0587190	MtrunA17_Chr2g0333051	52.555	137	48	5	1	123	1	134	4.27e-35	117
Msa0587190	MtrunA17_Chr4g0063791	40.411	146	59	6	5	126	35	176	4.91e-17	72.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0587190	AT1G52565.1	43.571	140	52	5	1	127	4	129	3.42e-18	75.1
Msa0587190	AT3G15760.1	40.580	138	60	6	1	123	1	131	4.83e-15	67.0

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Find 31 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTTGTGAATTTATGA+TGG	0.447654	4_2:-8667942	Msa0587190:three_prime_UTR
AAACAGAGTAAAGAAAACAG+AGG	0.672838	4_2:+8668849	None:intergenic
AAAGATCTAATGTATTCTTG+TGG	0.676296	4_2:-8667882	Msa0587190:three_prime_UTR
AACAATATTTGAAGTCCTAA+TGG	0.333607	4_2:-8667971	Msa0587190:three_prime_UTR
AACAGTAGTTGAAACAACCA+TGG	0.660669	4_2:+8668778	None:intergenic
AACATGACTTCAATCTCACA+AGG	0.670440	4_2:-8668818	Msa0587190:CDS
AAGAGATAGAGTTCAAAGAA+TGG	0.465347	4_2:-8668189	Msa0587190:CDS
AAGGGTGGGTATTCTTGTGA+AGG	0.586206	4_2:-8667919	Msa0587190:three_prime_UTR
AATAGAGTTGCTTTGTACAA+TGG	0.493962	4_2:-8668218	Msa0587190:CDS
AGAGATAGAGTTCAAAGAAT+GGG	0.376812	4_2:-8668188	Msa0587190:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAGAGTAAAGAAAACAG+AGG	+	chr4_2:8667860-8667879	None:intergenic	30.0%
AAGAGATAGAGTTCAAAGAA+TGG	-	chr4_2:8668517-8668536	Msa0587190:intron	30.0%
AGAGATAGAGTTCAAAGAAT+GGG	-	chr4_2:8668518-8668537	Msa0587190:intron	30.0%
GTCATTGATCATCTTAGTTA+TGG	-	chr4_2:8668546-8668565	Msa0587190:intron	30.0%
TAGTTATGGAAGTTAGAACA+TGG	-	chr4_2:8668560-8668579	Msa0587190:intron	30.0%
AGTTATGGAAGTTAGAACAT+GGG	-	chr4_2:8668561-8668580	Msa0587190:intron	30.0%
TTAGAACATGGTATAGAACA+TGG	-	chr4_2:8668602-8668621	Msa0587190:intron	30.0%
TAGAACATGGTATAGAACAT+GGG	-	chr4_2:8668603-8668622	Msa0587190:intron	30.0%
AAACAGAGTAAAGAAAACAG+AGG	+	chr4_2:8667860-8667879	None:intergenic	30.0%
AAGAGATAGAGTTCAAAGAA+TGG	-	chr4_2:8668517-8668536	Msa0587190:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	8667818	8668910	8667818	ID=Msa0587190;Name=Msa0587190
chr4_2	mRNA	8667818	8668910	8667818	ID=Msa0587190-mRNA-1;Parent=Msa0587190;Name=Msa0587190-mRNA-1;_AED=0.05;_eAED=0.05;_QI=73\|1\|1\|1\|1\|1\|2\|357\|127
chr4_2	exon	8667818	8668395	8667818	ID=Msa0587190-mRNA-1:exon:2371;Parent=Msa0587190-mRNA-1
chr4_2	exon	8668675	8668910	8668675	ID=Msa0587190-mRNA-1:exon:2370;Parent=Msa0587190-mRNA-1
chr4_2	five_prime_UTR	8668838	8668910	8668838	ID=Msa0587190-mRNA-1:five_prime_utr;Parent=Msa0587190-mRNA-1
chr4_2	CDS	8668675	8668837	8668675	ID=Msa0587190-mRNA-1:cds;Parent=Msa0587190-mRNA-1
chr4_2	CDS	8668175	8668395	8668175	ID=Msa0587190-mRNA-1:cds;Parent=Msa0587190-mRNA-1
chr4_2	three_prime_UTR	8667818	8668174	8667818	ID=Msa0587190-mRNA-1:three_prime_utr;Parent=Msa0587190-mRNA-1

Gene Sequence

>Msa0587190

ATGACTTCAATCTCACAAGGTCTTGTTTTAACCACAGCCATGGTTGTTTCAACTACTGTTCTTTATCTTACTTTCTGTAAACAAAAAAACTCATCACCATTTCAATTCCATGAAACACCCAATTCAGAAAACAAACCTATTCTACGATCTTGTTTATACACAGAGGAAAAGAAGAAGGAAAAATTAAGAAAGAAGAAGAAAGTGAAATTTTCAGAAAATGTGATGGTGAAAGAATTTAGAGAAAAACAGGGGAAGAAAAACAGAGTATCAATTAATGAATGCAGAAATGAAATTCCAGAAACAAAAGCAATGCCAGCAAATAGAGTTGCTTTGTACAATGGAATTTTAAGAGATAGAGTTCAAAGAATGGGGTGTTGTCATTGA

Protein sequence

>Msa0587190

MTSISQGLVLTTAMVVSTTVLYLTFCKQKNSSPFQFHETPNSENKPILRSCLYTEEKKKEKLRKKKKVKFSENVMVKEFREKQGKKNRVSINECRNEIPETKAMPANRVALYNGILRDRVQRMGCCH*