AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1394060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1394060 MtrunA17_CPg0492851 87.385 325 1 2 65 349 1 325 0.0 557
Msa1394060 MtrunA17_Chr4g0015731 87.385 325 1 2 65 349 1 325 0.0 557
Msa1394060 MtrunA17_Chr4g0016821 87.385 325 1 2 65 349 1 325 0.0 557
Msa1394060 MtrunA17_Chr4g0016981 76.596 94 3 2 108 197 42 120 6.72e-40 137
Msa1394060 MtrunA17_Chr4g0016991 95.385 65 3 0 285 349 1 65 1.85e-36 126
Msa1394060 MtrunA17_Chr5g0403621 96.667 60 2 0 1 60 86 145 2.84e-35 126
Msa1394060 MtrunA17_CPg0492871 98.333 60 1 0 1 60 86 145 1.54e-34 126
Msa1394060 MtrunA17_Chr4g0015721 98.333 60 1 0 1 60 86 145 1.54e-34 126
Msa1394060 MtrunA17_Chr4g0016811 98.333 60 1 0 1 60 95 154 1.66e-34 126
Msa1394060 MtrunA17_Chr3g0141111 94.737 57 3 0 1 57 15 71 1.55e-32 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1394060 ATCG00540.1 79.688 320 25 2 70 349 1 320 1.61e-178 498
Msa1394060 ATCG00530.1 67.241 58 19 0 3 60 88 145 1.61e-18 84.0

Find 76 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTGGCATCTATTATTT+TGG 0.108321 tig0021785:+15849 Msa1394060:CDS
TTCTAAGTGGTTATTCTATT+AGG 0.170612 tig0021785:+14433 Msa1394060:CDS
ACAAGGTCTGTTGTTCTTCT+TGG 0.210830 tig0021785:+15834 Msa1394060:CDS
TCTAAGTGGTTATTCTATTA+GGG 0.213858 tig0021785:+14434 Msa1394060:CDS
ACATTAGGATTACTCGTTAA+TGG 0.226644 tig0021785:-15757 None:intergenic
TAGAATAACCACTTAGAATA+AGG 0.296044 tig0021785:-14428 None:intergenic
CTACAGGCTTATTAGCTAAA+TGG 0.299374 tig0021785:-15154 None:intergenic
CTATATACGTAGGCGGGAAT+AGG 0.308836 tig0021785:+15521 Msa1394060:CDS
AATCCTAATGTGGGTGGATT+TGG 0.318985 tig0021785:+15769 Msa1394060:CDS
AACTCATTATTCTTAACTCT+TGG 0.323937 tig0021785:+14466 Msa1394060:CDS
AAAATTATACGAAAAGAAAA+AGG 0.339453 tig0021785:+15622 Msa1394060:CDS
TATATACGTAGGCGGGAATA+GGG 0.340058 tig0021785:+15522 Msa1394060:CDS
CTATTCCCGCCTACGTATAT+AGG 0.341092 tig0021785:-15520 None:intergenic
GTTAAACAAGTTCTTGCTAA+TGG 0.346567 tig0021785:+15251 Msa1394060:CDS
GGTTGTTCGTCTCTATCAAT+TGG 0.367131 tig0021785:-14356 None:intergenic
CCCTCTGAAACAAGAAGTTC+TGG 0.373836 tig0021785:-15712 None:intergenic
TAATGTGGGTGGATTTGGTC+AGG 0.386047 tig0021785:+15774 Msa1394060:CDS
TGACCAAATCCACCCACATT+AGG 0.412065 tig0021785:-15772 None:intergenic
TGTTTAACTTGCATATCATA+AGG 0.412925 tig0021785:-15236 None:intergenic
ACTCATTATTCTTAACTCTT+GGG 0.414290 tig0021785:+14467 Msa1394060:CDS
AATGGGATATGCATTTGAAA+TGG 0.432612 tig0021785:-15069 None:intergenic
GTTTATAATGCTACAGCAAC+AGG 0.436701 tig0021785:+15589 Msa1394060:CDS
GATCATGAGCAATACGGAAA+TGG 0.442149 tig0021785:-15027 None:intergenic
AAATCGTATGGATACGGTCT+TGG 0.446811 tig0021785:-14377 None:intergenic
TTATTACTCTTGCTCCCGTC+GGG 0.465288 tig0021785:-15562 None:intergenic
ATATGTTTCCTTATTCTAAG+TGG 0.468100 tig0021785:+14420 Msa1394060:CDS
TACAGAAATGCAAAATCGTA+TGG 0.481344 tig0021785:-14389 None:intergenic
ACTGCTTCAAATACAGTATC+GGG 0.488265 tig0021785:-15203 None:intergenic
AAAAGCATTTCTAGTTTGCA+TGG 0.489913 tig0021785:-14976 None:intergenic
TGGATACGAAATAACGATAG+TGG 0.491690 tig0021785:+15645 Msa1394060:CDS
AACTGCTTCAAATACAGTAT+CGG 0.494328 tig0021785:-15204 None:intergenic
ATGGGATATGCATTTGAAAT+GGG 0.502392 tig0021785:-15068 None:intergenic
GAGCAATACGGAAATGGATC+GGG 0.505456 tig0021785:-15021 None:intergenic
CAAGATCCGTTACGTGTACA+AGG 0.506414 tig0021785:+15817 Msa1394060:CDS
TATATAGATCATGAGCAATA+CGG 0.512581 tig0021785:-15033 None:intergenic
ATCCGCCCGGTAGCTTCTCT+CGG 0.516777 tig0021785:-15116 None:intergenic
AATATCCTATATACGTAGGC+GGG 0.517081 tig0021785:+15515 Msa1394060:CDS
ATGTGGGTGGATTTGGTCAG+GGG 0.523100 tig0021785:+15776 Msa1394060:CDS
ATTATTACTCTTGCTCCCGT+CGG 0.527873 tig0021785:-15563 None:intergenic
CCAGAACTTCTTGTTTCAGA+GGG 0.530598 tig0021785:+15712 Msa1394060:CDS
AATGTGGGTGGATTTGGTCA+GGG 0.534197 tig0021785:+15775 Msa1394060:CDS
ATCTCGGGCGAAATACGATC+AGG 0.534200 tig0021785:-15338 None:intergenic
CTAAGTGGTTATTCTATTAG+GGG 0.545375 tig0021785:+14435 Msa1394060:CDS
GAAACAAGAAGTTCTGGTCC+TGG 0.545439 tig0021785:-15706 None:intergenic
GTAGGCGGGAATAGGGGAAG+GGG 0.547797 tig0021785:+15529 Msa1394060:CDS
AATGCAAAATCGTATGGATA+CGG 0.548969 tig0021785:-14383 None:intergenic
GTGAACATCTCTCTTAGTAG+CGG 0.549431 tig0021785:-15485 None:intergenic
ACCAGAACTTCTTGTTTCAG+AGG 0.553828 tig0021785:+15711 Msa1394060:CDS
AAAATCCGAGAGAAGCTACC+GGG 0.554646 tig0021785:+15111 Msa1394060:CDS
TGAGCAATACGGAAATGGAT+CGG 0.555873 tig0021785:-15022 None:intergenic
GTGATTGATATTATACCGCC+AGG 0.566218 tig0021785:+15688 Msa1394060:CDS
TGAACATCTCTCTTAGTAGC+GGG 0.566429 tig0021785:-15484 None:intergenic
ATTAACGAGTAATCCTAATG+TGG 0.573726 tig0021785:+15759 Msa1394060:CDS
GGGGCCAATTCAAAACCCTC+TGG 0.574508 tig0021785:-15314 None:intergenic
GGGGTCAGATTTATCCCGAC+GGG 0.575656 tig0021785:+15548 Msa1394060:CDS
ACGTAGGCGGGAATAGGGGA+AGG 0.589088 tig0021785:+15527 Msa1394060:CDS
ACGATAGTGGATGCATCGGA+TGG 0.592008 tig0021785:+15658 Msa1394060:CDS
AACAGACCTTGTACACGTAA+CGG 0.600684 tig0021785:-15823 None:intergenic
GAAAATCCGAGAGAAGCTAC+CGG 0.606144 tig0021785:+15110 Msa1394060:CDS
TGTGGGTGGATTTGGTCAGG+GGG 0.611690 tig0021785:+15777 Msa1394060:CDS
AAATATCCTATATACGTAGG+CGG 0.616381 tig0021785:+15514 Msa1394060:CDS
TTAAAATATCCTATATACGT+AGG 0.623794 tig0021785:+15511 Msa1394060:CDS
ACGAGTAATCCTAATGTGGG+TGG 0.626177 tig0021785:+15763 Msa1394060:CDS
TCGGGCGAAATACGATCAGG+AGG 0.629985 tig0021785:-15335 None:intergenic
ATTAGCACATACAATCCGCC+CGG 0.633238 tig0021785:-15129 None:intergenic
AATAACGATAGTGGATGCAT+CGG 0.634066 tig0021785:+15654 Msa1394060:CDS
ATATACGTAGGCGGGAATAG+GGG 0.641009 tig0021785:+15523 Msa1394060:CDS
CGTAGGCGGGAATAGGGGAA+GGG 0.650670 tig0021785:+15528 Msa1394060:CDS
TTAACGAGTAATCCTAATGT+GGG 0.652400 tig0021785:+15760 Msa1394060:CDS
AGATATTGAGGTTCCACAAG+CGG 0.653295 tig0021785:+15175 Msa1394060:intron
CGGGCGAAATACGATCAGGA+GGG 0.656521 tig0021785:-15334 None:intergenic
GGGCGAAATACGATCAGGAG+GGG 0.658846 tig0021785:-15333 None:intergenic
AGGGGTCAGATTTATCCCGA+CGG 0.672516 tig0021785:+15547 Msa1394060:CDS
GTATCGGGAAGTACCGCTTG+TGG 0.687149 tig0021785:-15188 None:intergenic
ACAAGAAGTTCTGGTCCTGG+CGG 0.692543 tig0021785:-15703 None:intergenic
ATCCGAGAGAAGCTACCGGG+CGG 0.767274 tig0021785:+15114 Msa1394060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATAAATCAGTTAATAAA+AGG - tig0021785:14542-14561 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG + tig0021785:14543-14562 Msa1394060:intron 15.0%
!!! TAGATACAATTTTAAAATAC+TGG + tig0021785:14679-14698 Msa1394060:intron 15.0%
!! AAAATTTCTACAATAAGATT+AGG - tig0021785:14939-14958 None:intergenic 15.0%
!!! ACAAGAATATTTTTTTTTGT+GGG - tig0021785:15404-15423 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG + tig0021785:15622-15641 Msa1394060:CDS 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG + tig0021785:15891-15910 Msa1394060:CDS 15.0%
!! TACATAAATCAGTTAATAAA+AGG - tig0021785:14542-14561 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG + tig0021785:14543-14562 Msa1394060:intron 15.0%
!!! TAGATACAATTTTAAAATAC+TGG + tig0021785:14679-14698 Msa1394060:intron 15.0%
!! AAAATTTCTACAATAAGATT+AGG - tig0021785:14939-14958 None:intergenic 15.0%
!!! ACAAGAATATTTTTTTTTGT+GGG - tig0021785:15404-15423 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG + tig0021785:15622-15641 Msa1394060:CDS 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG + tig0021785:15891-15910 Msa1394060:CDS 15.0%
!!! AAAATTGTATCTAAAATGAC+TGG - tig0021785:14672-14691 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG - tig0021785:14780-14799 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG - tig0021785:14871-14890 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG + tig0021785:14940-14959 Msa1394060:intron 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG - tig0021785:15357-15376 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTTG+TGG - tig0021785:15405-15424 None:intergenic 20.0%
!! CACAAAAAAAAATATTCTTG+TGG + tig0021785:15403-15422 Msa1394060:intron 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG + tig0021785:15407-15426 Msa1394060:intron 20.0%
!! TTAAAATATCCTATATACGT+AGG + tig0021785:15511-15530 Msa1394060:CDS 20.0%
!!! AAAATTGTATCTAAAATGAC+TGG - tig0021785:14672-14691 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG - tig0021785:14780-14799 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG - tig0021785:14871-14890 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG + tig0021785:14940-14959 Msa1394060:intron 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG - tig0021785:15357-15376 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTTG+TGG - tig0021785:15405-15424 None:intergenic 20.0%
!! CACAAAAAAAAATATTCTTG+TGG + tig0021785:15403-15422 Msa1394060:intron 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG + tig0021785:15407-15426 Msa1394060:intron 20.0%
!! TTAAAATATCCTATATACGT+AGG + tig0021785:15511-15530 Msa1394060:CDS 20.0%
! ATATGTTTCCTTATTCTAAG+TGG + tig0021785:14420-14439 Msa1394060:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG - tig0021785:14431-14450 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG + tig0021785:14433-14452 Msa1394060:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG + tig0021785:14434-14453 Msa1394060:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG + tig0021785:14466-14485 Msa1394060:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG + tig0021785:14467-14486 Msa1394060:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG + tig0021785:14630-14649 Msa1394060:intron 25.0%
! GAGATACACGATTTAAATAA+CGG - tig0021785:14710-14729 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG + tig0021785:14889-14908 Msa1394060:intron 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG + tig0021785:14894-14913 Msa1394060:intron 25.0%
!!! AAATAGCAGAATAATGGATA+GGG + tig0021785:14895-14914 Msa1394060:intron 25.0%
! TTTCTACAATAAGATTAGGT+AGG - tig0021785:14935-14954 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG + tig0021785:14952-14971 Msa1394060:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG + tig0021785:14982-15001 Msa1394060:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG + tig0021785:14989-15008 Msa1394060:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG - tig0021785:15036-15055 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG - tig0021785:15239-15258 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG + tig0021785:15261-15280 Msa1394060:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG - tig0021785:15356-15375 None:intergenic 25.0%
! ATTATACGAAAAGAAAAAGG+TGG + tig0021785:15625-15644 Msa1394060:CDS 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG + tig0021785:15864-15883 Msa1394060:CDS 25.0%
! ATATGTTTCCTTATTCTAAG+TGG + tig0021785:14420-14439 Msa1394060:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG - tig0021785:14431-14450 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG + tig0021785:14433-14452 Msa1394060:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG + tig0021785:14434-14453 Msa1394060:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG + tig0021785:14466-14485 Msa1394060:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG + tig0021785:14467-14486 Msa1394060:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG + tig0021785:14630-14649 Msa1394060:intron 25.0%
! GAGATACACGATTTAAATAA+CGG - tig0021785:14710-14729 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG + tig0021785:14889-14908 Msa1394060:intron 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG + tig0021785:14894-14913 Msa1394060:intron 25.0%
!!! AAATAGCAGAATAATGGATA+GGG + tig0021785:14895-14914 Msa1394060:intron 25.0%
! TTTCTACAATAAGATTAGGT+AGG - tig0021785:14935-14954 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG + tig0021785:14952-14971 Msa1394060:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG + tig0021785:14982-15001 Msa1394060:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG + tig0021785:14989-15008 Msa1394060:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG - tig0021785:15036-15055 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG - tig0021785:15239-15258 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG + tig0021785:15261-15280 Msa1394060:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG - tig0021785:15356-15375 None:intergenic 25.0%
! ATTATACGAAAAGAAAAAGG+TGG + tig0021785:15625-15644 Msa1394060:CDS 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG + tig0021785:15864-15883 Msa1394060:CDS 25.0%
AATGCAAAATCGTATGGATA+CGG - tig0021785:14386-14405 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG - tig0021785:14392-14411 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG + tig0021785:14435-14454 Msa1394060:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG - tig0021785:14664-14683 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG - tig0021785:14732-14751 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG + tig0021785:14858-14877 Msa1394060:intron 30.0%
AATAAGATTAGGTAGGTTAC+TGG - tig0021785:14928-14947 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG - tig0021785:14979-14998 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG - tig0021785:15071-15090 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG - tig0021785:15072-15091 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG + tig0021785:15163-15182 Msa1394060:intron 30.0%
AACTGCTTCAAATACAGTAT+CGG - tig0021785:15207-15226 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG + tig0021785:15251-15270 Msa1394060:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG + tig0021785:15260-15279 Msa1394060:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG + tig0021785:15262-15281 Msa1394060:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG + tig0021785:15353-15372 Msa1394060:CDS 30.0%
AATTTCACTATATTCTTCCC+AGG - tig0021785:15440-15459 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG + tig0021785:15514-15533 Msa1394060:CDS 30.0%
ACATTAGGATTACTCGTTAA+TGG - tig0021785:15760-15779 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG + tig0021785:15759-15778 Msa1394060:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG + tig0021785:15760-15779 Msa1394060:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG + tig0021785:15849-15868 Msa1394060:CDS 30.0%
AATGCAAAATCGTATGGATA+CGG - tig0021785:14386-14405 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG - tig0021785:14392-14411 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG + tig0021785:14435-14454 Msa1394060:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG - tig0021785:14664-14683 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG - tig0021785:14732-14751 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG + tig0021785:14858-14877 Msa1394060:intron 30.0%
AATAAGATTAGGTAGGTTAC+TGG - tig0021785:14928-14947 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG - tig0021785:14979-14998 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG - tig0021785:15071-15090 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG - tig0021785:15072-15091 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG + tig0021785:15163-15182 Msa1394060:intron 30.0%
AACTGCTTCAAATACAGTAT+CGG - tig0021785:15207-15226 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG + tig0021785:15251-15270 Msa1394060:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG + tig0021785:15260-15279 Msa1394060:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG + tig0021785:15262-15281 Msa1394060:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG + tig0021785:15353-15372 Msa1394060:CDS 30.0%
AATTTCACTATATTCTTCCC+AGG - tig0021785:15440-15459 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG + tig0021785:15514-15533 Msa1394060:CDS 30.0%
ACATTAGGATTACTCGTTAA+TGG - tig0021785:15760-15779 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG + tig0021785:15759-15778 Msa1394060:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG + tig0021785:15760-15779 Msa1394060:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG + tig0021785:15849-15868 Msa1394060:CDS 30.0%
ATAGGATTCCATTCAACTCA+TGG + tig0021785:14561-14580 Msa1394060:intron 35.0%
ATTCCATTCAACTCATGGTT+GGG + tig0021785:14566-14585 Msa1394060:intron 35.0%
ATGGTTGGGAACTAATGATT+GGG + tig0021785:14580-14599 Msa1394060:intron 35.0%
! GGGTCTGTCTATAAAGATTT+TGG + tig0021785:14600-14619 Msa1394060:intron 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG + tig0021785:15082-15101 Msa1394060:CDS 35.0%
!! TATCCCATTTTTGCTCAACA+GGG + tig0021785:15083-15102 Msa1394060:CDS 35.0%
TAACCCTGTTGAGCAAAAAT+GGG - tig0021785:15089-15108 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG - tig0021785:15090-15109 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG - tig0021785:15157-15176 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG - tig0021785:15206-15225 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG + tig0021785:15275-15294 Msa1394060:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG + tig0021785:15298-15317 Msa1394060:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG + tig0021785:15299-15318 Msa1394060:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG + tig0021785:15310-15329 Msa1394060:CDS 35.0%
ATCTGGAGAAAGAATAGGAA+AGG - tig0021785:15464-15483 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG + tig0021785:15515-15534 Msa1394060:CDS 35.0%
GTTTATAATGCTACAGCAAC+AGG + tig0021785:15589-15608 Msa1394060:CDS 35.0%
TGGATACGAAATAACGATAG+TGG + tig0021785:15645-15664 Msa1394060:CDS 35.0%
!! AATAACGATAGTGGATGCAT+CGG + tig0021785:15654-15673 Msa1394060:CDS 35.0%
ATAGGATTCCATTCAACTCA+TGG + tig0021785:14561-14580 Msa1394060:intron 35.0%
ATTCCATTCAACTCATGGTT+GGG + tig0021785:14566-14585 Msa1394060:intron 35.0%
ATGGTTGGGAACTAATGATT+GGG + tig0021785:14580-14599 Msa1394060:intron 35.0%
! GGGTCTGTCTATAAAGATTT+TGG + tig0021785:14600-14619 Msa1394060:intron 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG + tig0021785:15082-15101 Msa1394060:CDS 35.0%
!! TATCCCATTTTTGCTCAACA+GGG + tig0021785:15083-15102 Msa1394060:CDS 35.0%
TAACCCTGTTGAGCAAAAAT+GGG - tig0021785:15089-15108 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG - tig0021785:15090-15109 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG - tig0021785:15157-15176 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG - tig0021785:15206-15225 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG + tig0021785:15275-15294 Msa1394060:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG + tig0021785:15298-15317 Msa1394060:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG + tig0021785:15299-15318 Msa1394060:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG + tig0021785:15310-15329 Msa1394060:CDS 35.0%
ATCTGGAGAAAGAATAGGAA+AGG - tig0021785:15464-15483 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG + tig0021785:15515-15534 Msa1394060:CDS 35.0%
GTTTATAATGCTACAGCAAC+AGG + tig0021785:15589-15608 Msa1394060:CDS 35.0%
TGGATACGAAATAACGATAG+TGG + tig0021785:15645-15664 Msa1394060:CDS 35.0%
!! AATAACGATAGTGGATGCAT+CGG + tig0021785:15654-15673 Msa1394060:CDS 35.0%
GGTTGTTCGTCTCTATCAAT+TGG - tig0021785:14359-14378 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG - tig0021785:14380-14399 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG + tig0021785:14565-14584 Msa1394060:intron 40.0%
CATGGTTGGGAACTAATGAT+TGG + tig0021785:14579-14598 Msa1394060:intron 40.0%
TGAGCAATACGGAAATGGAT+CGG - tig0021785:15025-15044 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG - tig0021785:15030-15049 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG - tig0021785:15173-15192 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG + tig0021785:15175-15194 Msa1394060:intron 40.0%
ACTATATTCTTCCCAGGAAC+GGG - tig0021785:15434-15453 None:intergenic 40.0%
CACTATATTCTTCCCAGGAA+CGG - tig0021785:15435-15454 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG - tig0021785:15487-15506 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG - tig0021785:15488-15507 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG + tig0021785:15522-15541 Msa1394060:CDS 40.0%
ATTATTACTCTTGCTCCCGT+CGG - tig0021785:15566-15585 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG + tig0021785:15688-15707 Msa1394060:CDS 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG + tig0021785:15711-15730 Msa1394060:CDS 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG + tig0021785:15712-15731 Msa1394060:CDS 40.0%
! AATCCTAATGTGGGTGGATT+TGG + tig0021785:15769-15788 Msa1394060:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG - tig0021785:15826-15845 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG + tig0021785:15834-15853 Msa1394060:CDS 40.0%
GGTTGTTCGTCTCTATCAAT+TGG - tig0021785:14359-14378 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG - tig0021785:14380-14399 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG + tig0021785:14565-14584 Msa1394060:intron 40.0%
CATGGTTGGGAACTAATGAT+TGG + tig0021785:14579-14598 Msa1394060:intron 40.0%
TGAGCAATACGGAAATGGAT+CGG - tig0021785:15025-15044 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG - tig0021785:15030-15049 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG - tig0021785:15173-15192 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG + tig0021785:15175-15194 Msa1394060:intron 40.0%
ACTATATTCTTCCCAGGAAC+GGG - tig0021785:15434-15453 None:intergenic 40.0%
CACTATATTCTTCCCAGGAA+CGG - tig0021785:15435-15454 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG - tig0021785:15487-15506 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG - tig0021785:15488-15507 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG + tig0021785:15522-15541 Msa1394060:CDS 40.0%
ATTATTACTCTTGCTCCCGT+CGG - tig0021785:15566-15585 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG + tig0021785:15688-15707 Msa1394060:CDS 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG + tig0021785:15711-15730 Msa1394060:CDS 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG + tig0021785:15712-15731 Msa1394060:CDS 40.0%
! AATCCTAATGTGGGTGGATT+TGG + tig0021785:15769-15788 Msa1394060:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG - tig0021785:15826-15845 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG + tig0021785:15834-15853 Msa1394060:CDS 40.0%
! GTTCCCAACCATGAGTTGAA+TGG - tig0021785:14572-14591 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG - tig0021785:15024-15043 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG + tig0021785:15110-15129 Msa1394060:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG + tig0021785:15111-15130 Msa1394060:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG - tig0021785:15132-15151 None:intergenic 45.0%
CTATATTCTTCCCAGGAACG+GGG - tig0021785:15433-15452 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG - tig0021785:15523-15542 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG + tig0021785:15521-15540 Msa1394060:CDS 45.0%
ATATACGTAGGCGGGAATAG+GGG + tig0021785:15523-15542 Msa1394060:CDS 45.0%
TTATTACTCTTGCTCCCGTC+GGG - tig0021785:15565-15584 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG - tig0021785:15709-15728 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG - tig0021785:15715-15734 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG + tig0021785:15763-15782 Msa1394060:CDS 45.0%
TGACCAAATCCACCCACATT+AGG - tig0021785:15775-15794 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG + tig0021785:15774-15793 Msa1394060:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG + tig0021785:15775-15794 Msa1394060:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG + tig0021785:15817-15836 Msa1394060:CDS 45.0%
! GTTCCCAACCATGAGTTGAA+TGG - tig0021785:14572-14591 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG - tig0021785:15024-15043 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG + tig0021785:15110-15129 Msa1394060:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG + tig0021785:15111-15130 Msa1394060:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG - tig0021785:15132-15151 None:intergenic 45.0%
CTATATTCTTCCCAGGAACG+GGG - tig0021785:15433-15452 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG - tig0021785:15523-15542 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG + tig0021785:15521-15540 Msa1394060:CDS 45.0%
ATATACGTAGGCGGGAATAG+GGG + tig0021785:15523-15542 Msa1394060:CDS 45.0%
TTATTACTCTTGCTCCCGTC+GGG - tig0021785:15565-15584 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG - tig0021785:15709-15728 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG - tig0021785:15715-15734 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG + tig0021785:15763-15782 Msa1394060:CDS 45.0%
TGACCAAATCCACCCACATT+AGG - tig0021785:15775-15794 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG + tig0021785:15774-15793 Msa1394060:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG + tig0021785:15775-15794 Msa1394060:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG + tig0021785:15817-15836 Msa1394060:CDS 45.0%
!!! AAAAAAACAAATTTTATAAT+TGG - tig0021785:14788-14807 None:intergenic 5.0%
!!! AAAAAAACAAATTTTATAAT+TGG - tig0021785:14788-14807 None:intergenic 5.0%
ATCTCGGGCGAAATACGATC+AGG - tig0021785:15341-15360 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG - tig0021785:15469-15488 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG - tig0021785:15481-15500 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG + tig0021785:15547-15566 Msa1394060:CDS 50.0%
!! ACGATAGTGGATGCATCGGA+TGG + tig0021785:15658-15677 Msa1394060:CDS 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG - tig0021785:15706-15725 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG + tig0021785:15776-15795 Msa1394060:CDS 50.0%
ATCTCGGGCGAAATACGATC+AGG - tig0021785:15341-15360 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG - tig0021785:15469-15488 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG - tig0021785:15481-15500 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG + tig0021785:15547-15566 Msa1394060:CDS 50.0%
!! ACGATAGTGGATGCATCGGA+TGG + tig0021785:15658-15677 Msa1394060:CDS 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG - tig0021785:15706-15725 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG + tig0021785:15776-15795 Msa1394060:CDS 50.0%
!! GTATCGGGAAGTACCGCTTG+TGG - tig0021785:15191-15210 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG - tig0021785:15317-15336 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG - tig0021785:15336-15355 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG - tig0021785:15337-15356 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG - tig0021785:15338-15357 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG + tig0021785:15548-15567 Msa1394060:CDS 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG + tig0021785:15777-15796 Msa1394060:CDS 55.0%
!! GTATCGGGAAGTACCGCTTG+TGG - tig0021785:15191-15210 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG - tig0021785:15317-15336 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG - tig0021785:15336-15355 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG - tig0021785:15337-15356 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG - tig0021785:15338-15357 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG + tig0021785:15548-15567 Msa1394060:CDS 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG + tig0021785:15777-15796 Msa1394060:CDS 55.0%
ATCCGAGAGAAGCTACCGGG+CGG + tig0021785:15114-15133 Msa1394060:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG - tig0021785:15119-15138 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG + tig0021785:15420-15439 Msa1394060:intron 60.0%
ACGTAGGCGGGAATAGGGGA+AGG + tig0021785:15527-15546 Msa1394060:CDS 60.0%
CGTAGGCGGGAATAGGGGAA+GGG + tig0021785:15528-15547 Msa1394060:CDS 60.0%
GTAGGCGGGAATAGGGGAAG+GGG + tig0021785:15529-15548 Msa1394060:CDS 60.0%
ATCCGAGAGAAGCTACCGGG+CGG + tig0021785:15114-15133 Msa1394060:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG - tig0021785:15119-15138 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG + tig0021785:15420-15439 Msa1394060:intron 60.0%
ACGTAGGCGGGAATAGGGGA+AGG + tig0021785:15527-15546 Msa1394060:CDS 60.0%
CGTAGGCGGGAATAGGGGAA+GGG + tig0021785:15528-15547 Msa1394060:CDS 60.0%
GTAGGCGGGAATAGGGGAAG+GGG + tig0021785:15529-15548 Msa1394060:CDS 60.0%
CTTGTGGTAGGCCCCGTTCC+TGG + tig0021785:15419-15438 Msa1394060:intron 65.0%
CTTGTGGTAGGCCCCGTTCC+TGG + tig0021785:15419-15438 Msa1394060:intron 65.0%
Chromosome Type Strat End Strand Name
tig0021785 gene 14333 15939 14333 ID=Msa1394060;Name=Msa1394060
tig0021785 mRNA 14333 15939 14333 ID=Msa1394060-mRNA-1;Parent=Msa1394060;Name=Msa1394060-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|0.33|0.25|4|0|349
tig0021785 exon 14333 14513 14333 ID=Msa1394060-mRNA-1:exon:14186;Parent=Msa1394060-mRNA-1
tig0021785 exon 14952 15172 14952 ID=Msa1394060-mRNA-1:exon:14187;Parent=Msa1394060-mRNA-1
tig0021785 exon 15185 15374 15185 ID=Msa1394060-mRNA-1:exon:14188;Parent=Msa1394060-mRNA-1
tig0021785 exon 15482 15939 15482 ID=Msa1394060-mRNA-1:exon:14189;Parent=Msa1394060-mRNA-1
tig0021785 CDS 14333 14513 14333 ID=Msa1394060-mRNA-1:cds;Parent=Msa1394060-mRNA-1
tig0021785 CDS 14952 15172 14952 ID=Msa1394060-mRNA-1:cds;Parent=Msa1394060-mRNA-1
tig0021785 CDS 15185 15374 15185 ID=Msa1394060-mRNA-1:cds;Parent=Msa1394060-mRNA-1
tig0021785 CDS 15482 15939 15482 ID=Msa1394060-mRNA-1:cds;Parent=Msa1394060-mRNA-1
Gene Sequence

>Msa1394060

ATGGAAATCTACAAAGAAAGCATCCAATTGATAGAGACGAACAACCAAGACCGTATCCATACGATTTTGCATTTCTGTACAAATATAATATGTTTCCTTATTCTAAGTGGTTATTCTATTAGGGGTAATCAAGAACTCATTATTCTTAACTCTTGGGTTCAAGAATTTCTATATAACTTAAAAATTTTCAGGATGAATGATTGGACCATGCAAACTAGAAATGCTTTTTCTTGGATAAAGGAAGAGATTACCCGATCCATTTCCGTATTGCTCATGATCTATATAATAACTCGAGCACCCATTTCAAATGCATATCCCATTTTTGCTCAACAGGGTTATGAAAATCCGAGAGAAGCTACCGGGCGGATTGTATGTGCTAATTGCCATTTAGCTAATAAGCCTGTTCCACAAGCGGTACTTCCCGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAAGTTAAACAAGTTCTTGCTAATGGTAAAAAAGGGGCTTTGAATGTAGGTGCTGTTCTTATTTTACCAGAGGGTTTTGAATTGGCCCCTCCTGATCGTATTTCGCCCGAGATTAAAGAAAAAATAGATCCCGCTACTAAGAGAGATGTTCACTTCTTAAAATATCCTATATACGTAGGCGGGAATAGGGGAAGGGGTCAGATTTATCCCGACGGGAGCAAGAGTAATAATAATGTTTATAATGCTACAGCAACAGGTATAGTAAATAAAATTATACGAAAAGAAAAAGGTGGATACGAAATAACGATAGTGGATGCATCGGATGGACGTGAAGTGATTGATATTATACCGCCAGGACCAGAACTTCTTGTTTCAGAGGGTGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGTGGATTTGGTCAGGGGGATGCAGAAATAGTGCTTCAAGATCCGTTACGTGTACAAGGTCTGTTGTTCTTCTTGGCATCTATTATTTTGGCACAAATCTTTTTGGTTCTTAAAAAGAAACAATTTGAAAAGGTTCAATTGTCCGAAATGAATTTTTAG

Protein sequence

>Msa1394060

MEIYKESIQLIETNNQDRIHTILHFCTNIICFLILSGYSIRGNQELIILNSWVQEFLYNLKIFRMNDWTMQTRNAFSWIKEEITRSISVLLMIYIITRAPISNAYPIFAQQGYENPREATGRIVCANCHLANKPVPQAVLPDTVFEAVVRIPYDMQVKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEIKEKIDPATKRDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATATGIVNKIIRKEKGGYEITIVDASDGREVIDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLASIILAQIFLVLKKKQFEKVQLSEMNF*