AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0527950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0527950 MtrunA17_Chr3g0110261 99.157 356 3 0 1 356 1 356 0.0 728
Msa0527950 MtrunA17_Chr6g0479141 89.326 356 38 0 1 356 1 356 0.0 676
Msa0527950 MtrunA17_Chr5g0434471 87.042 355 46 0 2 356 3 357 0.0 657
Msa0527950 MtrunA17_Chr2g0287211 79.213 356 74 0 1 356 57 412 0.0 612
Msa0527950 MtrunA17_Chr2g0287181 75.562 356 87 0 1 356 57 412 0.0 590
Msa0527950 MtrunA17_Chr8g0364341 69.091 55 17 0 252 306 9 63 8.68e-20 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0527950 AT5G37600.1 89.326 356 38 0 1 356 1 356 0.0 679
Msa0527950 AT1G66200.1 88.764 356 40 0 1 356 1 356 0.0 677
Msa0527950 AT5G16570.1 90.169 356 35 0 1 356 1 356 0.0 676
Msa0527950 AT1G66200.3 86.575 365 40 1 1 356 1 365 0.0 669
Msa0527950 AT3G17820.1 85.552 353 51 0 1 353 1 353 0.0 644
Msa0527950 AT1G48470.1 81.065 338 64 0 16 353 16 353 0.0 598
Msa0527950 AT5G35630.3 76.966 356 82 0 1 356 59 414 0.0 596
Msa0527950 AT5G35630.2 76.966 356 82 0 1 356 59 414 0.0 596
Msa0527950 AT5G35630.1 76.966 356 82 0 1 356 59 414 0.0 596
Msa0527950 AT1G66200.2 88.889 252 28 0 1 252 1 252 5.44e-174 484
Msa0527950 AT5G16570.2 89.540 239 25 0 1 239 1 239 8.90e-162 452

Find 143 sgRNAs with CRISPR-Local

Find 562 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGCAAACCTTAATTGGTTT+TGG 0.177125 4_1:-629466 None:intergenic
CTTTGACCCAAAACCAATTA+AGG 0.180257 4_1:+629459 Msa0527950:CDS
TGGAAATAGCAAACCTTAAT+TGG 0.193278 4_1:-629472 None:intergenic
ATGGGTTGCTCGTTACATTT+TGG 0.219815 4_1:+629274 Msa0527950:CDS
CTGACATTAACACCTTCTTA+TGG 0.238098 4_1:+629879 Msa0527950:CDS
TCTAAATGGATCCTTGAAAA+TGG 0.250502 4_1:-627947 None:intergenic
GTTGATTACGCATTAGAATT+TGG 0.259893 4_1:+630278 Msa0527950:three_prime_UTR
ACTACTATAAATTTAACTTA+TGG 0.272583 4_1:+630528 Msa0527950:three_prime_UTR
ATATTGTTACCCCTTCTAAA+TGG 0.285580 4_1:-627961 None:intergenic
TTGGATTTGTGTTATTGTTA+TGG 0.290371 4_1:+630320 Msa0527950:three_prime_UTR
CCTTCTTCCCTCATGGTCAT+TGG 0.292176 4_1:-630482 None:intergenic
CTGAAAGGAGAGACATGTTT+TGG 0.292470 4_1:-626768 None:intergenic
ACTTTGTTTGTTTGAATTTG+AGG 0.300071 4_1:+630348 Msa0527950:three_prime_UTR
TCAAATCGAATCGAATCTTT+AGG 0.306816 4_1:+626701 Msa0527950:five_prime_UTR
ATGTCTCTTGTTGGTGGGAA+TGG 0.309316 4_1:-628442 None:intergenic
TTCAAACTTAGTAAAATCTA+AGG 0.315824 4_1:-626738 None:intergenic
TCTCTGCTGGTGATGAGATA+TGG 0.322815 4_1:+629255 Msa0527950:CDS
AAGGAGCACATTGCTGCTTA+TGG 0.324475 4_1:+629815 Msa0527950:CDS
TAATGCAAAACTAGGGTGAT+TGG 0.338203 4_1:+629600 Msa0527950:intron
TGAATTTGAGGCCTCGTTAT+AGG 0.356622 4_1:+630360 Msa0527950:three_prime_UTR
TGACATTAACACCTTCTTAT+GGG 0.364511 4_1:+629880 Msa0527950:CDS
TGCATAATATATGCAAGGTC+TGG 0.368560 4_1:-630597 None:intergenic
TTATTATTCTGACATTTACT+TGG 0.372035 4_1:-630405 None:intergenic
AGCTGTGAAGGGTCAGTAAC+TGG 0.376973 4_1:-627726 None:intergenic
GGTCTTATTTATAGCCTAGT+TGG 0.377270 4_1:-626613 None:intergenic
GGCAGCTGCATGTCTCTTGT+TGG 0.378014 4_1:-628451 None:intergenic
CATGTGTGTGTGGTGGCTTA+TGG 0.383641 4_1:-630232 None:intergenic
TATGTCAGGATTGGTGGATC+TGG 0.389845 4_1:+627555 Msa0527950:intron
GTGGGAATGGGTTCTCCAGC+TGG 0.392840 4_1:-628429 None:intergenic
AGAATCTAACCATATGTATT+CGG 0.402832 4_1:-626836 None:intergenic
CTTCATTATGTCAGGATTGG+TGG 0.404452 4_1:+627549 Msa0527950:intron
CAGGATTGGTGGATCTGGTT+TGG 0.409454 4_1:+627560 Msa0527950:intron
TGAAAGCAATTGAGAAGCTT+GGG 0.410163 4_1:+629783 Msa0527950:CDS
ATCATGGAAGTAACAACATA+TGG 0.411129 4_1:-630184 None:intergenic
TCCAGGAGCTTGACCTGTGC+TGG 0.411245 4_1:-627772 None:intergenic
TAGAAGGGGTAACAATATCT+TGG 0.417590 4_1:+627966 Msa0527950:CDS
CTGGTGCTCACACAAATTAC+AGG 0.417888 4_1:+629630 Msa0527950:CDS
AAAGACATCAATTGGCCTCT+TGG 0.419531 4_1:+628642 Msa0527950:CDS
CCCTCAGTTGGTATCTCTGC+TGG 0.420001 4_1:+629242 Msa0527950:CDS
TTGAAAGCAATTGAGAAGCT+TGG 0.420009 4_1:+629782 Msa0527950:CDS
GGCAACGAGCGTAGATTGAC+AGG 0.421220 4_1:+629842 Msa0527950:CDS
TGTTGCAGAAAGACATCAAT+TGG 0.424542 4_1:+628634 Msa0527950:CDS
TGTCTCTTGTTGGTGGGAAT+GGG 0.425962 4_1:-628441 None:intergenic
ATTCCTGCCTTCTTCCCTCA+TGG 0.426313 4_1:-630489 None:intergenic
CTCTGCTGGTGATGAGATAT+GGG 0.426324 4_1:+629256 Msa0527950:CDS
TAGAGGATCACTGAGGTTGC+TGG 0.429246 4_1:+629424 Msa0527950:intron
GCTGGTGCTGACAAGGCATT+TGG 0.430707 4_1:+628999 Msa0527950:CDS
GCATAATATATGCAAGGTCT+GGG 0.444486 4_1:-630596 None:intergenic
ATCAGGATGGCTGAAAATCT+TGG 0.445473 4_1:-628472 None:intergenic
CGGTGGTTTCGGAGAGGTCA+AGG 0.456062 4_1:-626801 None:intergenic
GTGGATCTGGTTTGGACTTG+AGG 0.460278 4_1:+627568 Msa0527950:CDS
GGCTTATGGTTTCCAGAGAA+TGG 0.461165 4_1:-630218 None:intergenic
CCTCTTGGTTGGCCAGTTGG+TGG 0.462411 4_1:+628657 Msa0527950:CDS
AAATCATCGCCGAATACATA+TGG 0.465828 4_1:+626827 Msa0527950:CDS
AGCTGCATGTCTCTTGTTGG+TGG 0.467488 4_1:-628448 None:intergenic
AATGGTGGTGTCTGCAATCA+TGG 0.470051 4_1:-630200 None:intergenic
TCCAGCACAGGTCAAGCTCC+TGG 0.473336 4_1:+627771 Msa0527950:CDS
TTGCAGACACCACCATTCTC+TGG 0.481231 4_1:+630206 Msa0527950:CDS
TGGCCTCTTGGTTGGCCAGT+TGG 0.482222 4_1:+628654 Msa0527950:CDS
AACTATGATGGTTCCAGCAC+AGG 0.485647 4_1:+627759 Msa0527950:CDS
GGTACTTCAGCAACAACATC+AGG 0.488296 4_1:-628489 None:intergenic
TTATTTGCTTACCCATAAGA+AGG 0.490705 4_1:-629891 None:intergenic
TTCCACTTGGGAAGCTGTGA+AGG 0.498232 4_1:-627738 None:intergenic
GATCCTTGAAAATGGCTTGT+GGG 0.500897 4_1:-627939 None:intergenic
ACATCAATTGGCCTCTTGGT+TGG 0.505676 4_1:+628646 Msa0527950:CDS
CCAATGACCATGAGGGAAGA+AGG 0.505889 4_1:+630482 Msa0527950:three_prime_UTR
GAATCAAATGAAAACGAAAA+CGG 0.513020 4_1:-626672 None:intergenic
GCACCAGCACCACAATAGTA+TGG 0.514601 4_1:-628984 None:intergenic
GGAAGGGACACAGAGAAAGC+AGG 0.514679 4_1:+630118 Msa0527950:CDS
TTGTGAGCTGCTCAGTTGGT+AGG 0.515130 4_1:-630625 None:intergenic
ATCAACATCAGTGGAATCAA+TGG 0.515689 4_1:+629068 Msa0527950:CDS
CTTCCCAAGTGGAACTATGA+TGG 0.516245 4_1:+627747 Msa0527950:CDS
GGAAAGGTTATTTCGAGGAT+AGG 0.519246 4_1:+630140 Msa0527950:CDS
CACATTGCTGCTTATGGAGA+AGG 0.521068 4_1:+629821 Msa0527950:CDS
TACAAAGCCTGTCTTTATGC+CGG 0.521155 4_1:+629044 Msa0527950:CDS
ACCAAGTCTATGAGAGAAGA+TGG 0.523810 4_1:+629743 Msa0527950:CDS
TAGAGAAGGTGAGGAAGACT+AGG 0.524386 4_1:+626580 Msa0527950:five_prime_UTR
TTTCAAGGATCCATTTAGAA+GGG 0.527758 4_1:+627951 Msa0527950:CDS
GTTGATGCCGGCATAAAGAC+AGG 0.529739 4_1:-629051 None:intergenic
GGACCATACTATTGTGGTGC+TGG 0.534606 4_1:+628981 Msa0527950:CDS
ACAGAGAAATGAGGCAGTGT+GGG 0.535734 4_1:-626635 None:intergenic
AAAAGATTATAGAGAAGGTG+AGG 0.538212 4_1:+626571 Msa0527950:five_prime_UTR
TATGGATCCATGTTAGATGA+TGG 0.538723 4_1:-630166 None:intergenic
GCTGCATGTCTCTTGTTGGT+GGG 0.539293 4_1:-628447 None:intergenic
GGTCCAGGAAAACCACCAAC+TGG 0.540153 4_1:-628669 None:intergenic
TTCCAAGTTGGTCCCTCAGT+TGG 0.551503 4_1:+629230 Msa0527950:CDS
CGTGGTGCGTCGATTAGAGT+TGG 0.552602 4_1:+630097 Msa0527950:CDS
ATAACTTCACTATCTTCTCC+AGG 0.553474 4_1:-627789 None:intergenic
GATCACTGAGGTTGCTGGTG+TGG 0.554625 4_1:+629429 Msa0527950:CDS
GATTCCACTGATGTTGATGC+CGG 0.555187 4_1:-629063 None:intergenic
AGCAGGGAAAGGTTATTTCG+AGG 0.555891 4_1:+630135 Msa0527950:CDS
AAGGTTATTTCGAGGATAGG+AGG 0.561130 4_1:+630143 Msa0527950:CDS
GGATCCTTGAAAATGGCTTG+TGG 0.562735 4_1:-627940 None:intergenic
GTCCTTGTGAGCTGCTCAGT+TGG 0.565947 4_1:-630629 None:intergenic
TGACCATGAGGGAAGAAGGC+AGG 0.566416 4_1:+630486 Msa0527950:three_prime_UTR
TGGACTTGAGGAGCAAAGCA+AGG 0.567464 4_1:+627580 Msa0527950:CDS
ACCATCTTCTCTCATAGACT+TGG 0.571470 4_1:-629744 None:intergenic
GGAACCATCATAGTTCCACT+TGG 0.572427 4_1:-627751 None:intergenic
ATTGATGTCTTTCTGCAACA+AGG 0.574318 4_1:-628631 None:intergenic
TTGTGGTGCTGGTGCTGACA+AGG 0.575827 4_1:+628992 Msa0527950:CDS
TGTGATGCATACACTCCAGC+TGG 0.581505 4_1:+628414 Msa0527950:CDS
TACCAACTGAGCAGCTCACA+AGG 0.581680 4_1:+630627 Msa0527950:three_prime_UTR
TACCAACTGAGGGACCAACT+TGG 0.582203 4_1:-629232 None:intergenic
GTGCGTCGATTAGAGTTGGA+AGG 0.584013 4_1:+630101 Msa0527950:CDS
ATGTAGTGGGAATTCCAAGT+TGG 0.586154 4_1:+629218 Msa0527950:intron
TAGGGTGATTGGAATGGTGC+TGG 0.586935 4_1:+629611 Msa0527950:intron
TTCAAGGATCCATTTAGAAG+GGG 0.590326 4_1:+627952 Msa0527950:CDS
ATCAATGGTGAAGTGATGCC+TGG 0.592881 4_1:+629083 Msa0527950:CDS
TACAATGCATAATATATGCA+AGG 0.595528 4_1:-630602 None:intergenic
TCCACTTGGGAAGCTGTGAA+GGG 0.596916 4_1:-627737 None:intergenic
GACACAGAGAAAGCAGGGAA+AGG 0.598045 4_1:+630124 Msa0527950:CDS
GAAGGGTCAGTAACTGGACC+TGG 0.599215 4_1:-627720 None:intergenic
CAATAGGGACCATACTATTG+TGG 0.601480 4_1:+628975 Msa0527950:intron
ACCCTTCACAGCTTCCCAAG+TGG 0.605168 4_1:+627736 Msa0527950:CDS
TAAGTCCAACTTACTTGACC+AGG 0.608274 4_1:-629101 None:intergenic
GGACTTGAGGAGCAAAGCAA+GGG 0.609551 4_1:+627581 Msa0527950:CDS
CAACTCTAATCGACGCACCA+CGG 0.611739 4_1:-630096 None:intergenic
CAAGGTTGATAAGATCTGAA+AGG 0.614499 4_1:-626783 None:intergenic
TTCAATGCATGTGTGTGTGG+TGG 0.619576 4_1:-630239 None:intergenic
TACTTCAATGCATGTGTGTG+TGG 0.619637 4_1:-630242 None:intergenic
TAGGAGGCCATCATCTAACA+TGG 0.627480 4_1:+630159 Msa0527950:CDS
CAAAACTAGGGTGATTGGAA+TGG 0.637511 4_1:+629605 Msa0527950:intron
GAAGGGACACAGAGAAAGCA+GGG 0.638354 4_1:+630119 Msa0527950:CDS
TGCGTCGATTAGAGTTGGAA+GGG 0.644595 4_1:+630102 Msa0527950:CDS
GAACCATCATAGTTCCACTT+GGG 0.652093 4_1:-627750 None:intergenic
AACAGAGAAATGAGGCAGTG+TGG 0.654868 4_1:-626636 None:intergenic
TTGAAGGGTGTTGCAAACCG+TGG 0.663350 4_1:+630079 Msa0527950:intron
TTATGGTTTCCAGAGAATGG+TGG 0.667248 4_1:-630215 None:intergenic
ACCAGCAGAGATACCAACTG+AGG 0.670459 4_1:-629243 None:intergenic
CCACCAACTGGCCAACCAAG+AGG 0.671238 4_1:-628657 None:intergenic
CAGAGAAATGAGGCAGTGTG+GGG 0.672345 4_1:-626634 None:intergenic
TATGCCGGCATCAACATCAG+TGG 0.676060 4_1:+629059 Msa0527950:CDS
CTTCAGCAACAACATCAGGA+TGG 0.677550 4_1:-628485 None:intergenic
CATAATATATGCAAGGTCTG+GGG 0.677890 4_1:-630595 None:intergenic
CCAGCAGAGATACCAACTGA+GGG 0.678315 4_1:-629242 None:intergenic
AATGTGAGTCAACAATGTCA+CGG 0.681181 4_1:-629022 None:intergenic
TTGTTGTGAACAGAGAAATG+AGG 0.688616 4_1:-626644 None:intergenic
GCAACGAGCGTAGATTGACA+GGG 0.702514 4_1:+629843 Msa0527950:CDS
ATGTTGTTGCTGAAGTACCA+TGG 0.706598 4_1:+628493 Msa0527950:CDS
GAAGCTTGGGAAGAAGCACA+AGG 0.711059 4_1:+629796 Msa0527950:CDS
GAAATATGAAACCTATAACG+AGG 0.728719 4_1:-630371 None:intergenic
AAGTCTATGAGAGAAGATGG+TGG 0.739470 4_1:+629746 Msa0527950:CDS
GTTCCAATAGAGGATCACTG+AGG 0.789699 4_1:+629417 Msa0527950:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAATAAAAAAAAAAAATCA+TGG - chr4_1:627051-627070 None:intergenic 10.0%
!! AGAAAAAAAATTAATCAAAA+GGG - chr4_1:627531-627550 None:intergenic 10.0%
!! AAGAAAAAAAATTAATCAAA+AGG - chr4_1:627532-627551 None:intergenic 10.0%
!! ACAAAATATATACATAATTA+AGG - chr4_1:627862-627881 None:intergenic 10.0%
!!! TATTATGATTTTTACTTATT+TGG + chr4_1:627899-627918 Msa0527950:intron 10.0%
!!! ATTATGATTTTTACTTATTT+GGG + chr4_1:627900-627919 Msa0527950:intron 10.0%
!!! TAAACAAATTTAAAACAATT+AGG - chr4_1:628822-628841 None:intergenic 10.0%
!! AAAAAAATAACATAAAACTA+TGG - chr4_1:628847-628866 None:intergenic 10.0%
!!! AATCAACAATAATTATTTTA+CGG - chr4_1:630443-630462 None:intergenic 10.0%
!! TGAATAAAAAAAAAAAATCA+TGG - chr4_1:627051-627070 None:intergenic 10.0%
!! AGAAAAAAAATTAATCAAAA+GGG - chr4_1:627531-627550 None:intergenic 10.0%
!! AAGAAAAAAAATTAATCAAA+AGG - chr4_1:627532-627551 None:intergenic 10.0%
!! ACAAAATATATACATAATTA+AGG - chr4_1:627862-627881 None:intergenic 10.0%
!!! TATTATGATTTTTACTTATT+TGG + chr4_1:627899-627918 Msa0527950:intron 10.0%
!!! ATTATGATTTTTACTTATTT+GGG + chr4_1:627900-627919 Msa0527950:intron 10.0%
!!! TAAACAAATTTAAAACAATT+AGG - chr4_1:628822-628841 None:intergenic 10.0%
!! AAAAAAATAACATAAAACTA+TGG - chr4_1:628847-628866 None:intergenic 10.0%
!!! AATCAACAATAATTATTTTA+CGG - chr4_1:630443-630462 None:intergenic 10.0%
!!! ATAGATTTTTAAGTTGATTT+TGG + chr4_1:627181-627200 Msa0527950:intron 15.0%
!!! TAGATTTTTAAGTTGATTTT+GGG + chr4_1:627182-627201 Msa0527950:intron 15.0%
!!! TTTTTTGTTTGGAATAAAAT+TGG + chr4_1:627326-627345 Msa0527950:intron 15.0%
!! GAAAAAAAATTAATCAAAAG+GGG - chr4_1:627530-627549 None:intergenic 15.0%
!!! AAAATATAAATGGCTTTTTT+GGG + chr4_1:627686-627705 Msa0527950:intron 15.0%
!!! ATTTTGTTCTTCTTTTTTTT+TGG + chr4_1:627875-627894 Msa0527950:intron 15.0%
!!! TTATGATTTTTACTTATTTG+GGG + chr4_1:627901-627920 Msa0527950:intron 15.0%
!!! TAGTAATTTTGATACATTTA+AGG - chr4_1:628068-628087 None:intergenic 15.0%
!! ATTTAATTAAACACAAAAGA+GGG - chr4_1:628384-628403 None:intergenic 15.0%
!! AATTTAATTAAACACAAAAG+AGG - chr4_1:628385-628404 None:intergenic 15.0%
!!! TTTTGTGTTTAATTAAATTC+AGG + chr4_1:628386-628405 Msa0527950:intron 15.0%
!!! AATTTAAAACAATTAGGTAT+GGG - chr4_1:628816-628835 None:intergenic 15.0%
!!! AAATTTAAAACAATTAGGTA+TGG - chr4_1:628817-628836 None:intergenic 15.0%
!!! TATTTTATAATTTGCTCAAT+AGG + chr4_1:628959-628978 Msa0527950:intron 15.0%
!!! ATTTTATAATTTGCTCAATA+GGG + chr4_1:628960-628979 Msa0527950:intron 15.0%
!! TAGTAAATAATAATGCTAAA+GGG - chr4_1:629132-629151 None:intergenic 15.0%
!!! TATTGTTTTTTTAATGTAGT+GGG + chr4_1:629205-629224 Msa0527950:intron 15.0%
!!! TATTTTTTTAATGCAAAACT+AGG + chr4_1:629592-629611 Msa0527950:intron 15.0%
!!! ATTTTTTTAATGCAAAACTA+GGG + chr4_1:629593-629612 Msa0527950:intron 15.0%
!!! CTATAGTTGAATATTTTATA+TGG + chr4_1:629684-629703 Msa0527950:intron 15.0%
!!! ACTACTATAAATTTAACTTA+TGG + chr4_1:630528-630547 Msa0527950:three_prime_UTR 15.0%
!!! ATAGATTTTTAAGTTGATTT+TGG + chr4_1:627181-627200 Msa0527950:intron 15.0%
!!! TAGATTTTTAAGTTGATTTT+GGG + chr4_1:627182-627201 Msa0527950:intron 15.0%
!!! TTTTTTGTTTGGAATAAAAT+TGG + chr4_1:627326-627345 Msa0527950:intron 15.0%
!! GAAAAAAAATTAATCAAAAG+GGG - chr4_1:627530-627549 None:intergenic 15.0%
!!! AAAATATAAATGGCTTTTTT+GGG + chr4_1:627686-627705 Msa0527950:intron 15.0%
!!! ATTTTGTTCTTCTTTTTTTT+TGG + chr4_1:627875-627894 Msa0527950:intron 15.0%
!!! TTATGATTTTTACTTATTTG+GGG + chr4_1:627901-627920 Msa0527950:intron 15.0%
!!! TAGTAATTTTGATACATTTA+AGG - chr4_1:628068-628087 None:intergenic 15.0%
!! ATTTAATTAAACACAAAAGA+GGG - chr4_1:628384-628403 None:intergenic 15.0%
!! AATTTAATTAAACACAAAAG+AGG - chr4_1:628385-628404 None:intergenic 15.0%
!!! TTTTGTGTTTAATTAAATTC+AGG + chr4_1:628386-628405 Msa0527950:intron 15.0%
!!! AATTTAAAACAATTAGGTAT+GGG - chr4_1:628816-628835 None:intergenic 15.0%
!!! AAATTTAAAACAATTAGGTA+TGG - chr4_1:628817-628836 None:intergenic 15.0%
!!! TATTTTATAATTTGCTCAAT+AGG + chr4_1:628959-628978 Msa0527950:intron 15.0%
!!! ATTTTATAATTTGCTCAATA+GGG + chr4_1:628960-628979 Msa0527950:intron 15.0%
!! TAGTAAATAATAATGCTAAA+GGG - chr4_1:629132-629151 None:intergenic 15.0%
!!! TATTGTTTTTTTAATGTAGT+GGG + chr4_1:629205-629224 Msa0527950:intron 15.0%
!!! TATTTTTTTAATGCAAAACT+AGG + chr4_1:629592-629611 Msa0527950:intron 15.0%
!!! ATTTTTTTAATGCAAAACTA+GGG + chr4_1:629593-629612 Msa0527950:intron 15.0%
!!! CTATAGTTGAATATTTTATA+TGG + chr4_1:629684-629703 Msa0527950:intron 15.0%
!!! ACTACTATAAATTTAACTTA+TGG + chr4_1:630528-630547 Msa0527950:three_prime_UTR 15.0%
!! TTCAAACTTAGTAAAATCTA+AGG - chr4_1:626741-626760 None:intergenic 20.0%
!!! CTCTCTTTTTTTAGTTATTT+TGG + chr4_1:627123-627142 Msa0527950:intron 20.0%
!!! AATGACTTTGTTTTTTTGTT+TGG + chr4_1:627315-627334 Msa0527950:intron 20.0%
!!! AAGATTTTAATATCATGGTT+TGG - chr4_1:627465-627484 None:intergenic 20.0%
!!! TTTTTTTTCTTCATTATGTC+AGG + chr4_1:627541-627560 Msa0527950:intron 20.0%
!!! GAAAATATAAATGGCTTTTT+TGG + chr4_1:627685-627704 Msa0527950:intron 20.0%
!!! TTGTCTTTTGTTAATTAGTT+TGG + chr4_1:628133-628152 Msa0527950:intron 20.0%
!! GTAGTAAATAATAATGCTAA+AGG - chr4_1:629133-629152 None:intergenic 20.0%
!!! CTATTGTTTTTTTAATGTAG+TGG + chr4_1:629204-629223 Msa0527950:intron 20.0%
!! TATAAGACAAGTATATCAAT+TGG - chr4_1:629549-629568 None:intergenic 20.0%
!!! TTGAATATTTTATATGGTCA+TGG + chr4_1:629690-629709 Msa0527950:intron 20.0%
!!! GAAACTTTTTTTTCTTTTCT+TGG - chr4_1:629933-629952 None:intergenic 20.0%
!!! TTTTTTGTTGTTCTAATTGT+TGG + chr4_1:630041-630060 Msa0527950:intron 20.0%
!! TTATTATTCTGACATTTACT+TGG - chr4_1:630408-630427 None:intergenic 20.0%
!! TTCAAACTTAGTAAAATCTA+AGG - chr4_1:626741-626760 None:intergenic 20.0%
!!! CTCTCTTTTTTTAGTTATTT+TGG + chr4_1:627123-627142 Msa0527950:intron 20.0%
!!! AATGACTTTGTTTTTTTGTT+TGG + chr4_1:627315-627334 Msa0527950:intron 20.0%
!!! AAGATTTTAATATCATGGTT+TGG - chr4_1:627465-627484 None:intergenic 20.0%
!!! TTTTTTTTCTTCATTATGTC+AGG + chr4_1:627541-627560 Msa0527950:intron 20.0%
!!! GAAAATATAAATGGCTTTTT+TGG + chr4_1:627685-627704 Msa0527950:intron 20.0%
!!! TTGTCTTTTGTTAATTAGTT+TGG + chr4_1:628133-628152 Msa0527950:intron 20.0%
!! GTAGTAAATAATAATGCTAA+AGG - chr4_1:629133-629152 None:intergenic 20.0%
!!! CTATTGTTTTTTTAATGTAG+TGG + chr4_1:629204-629223 Msa0527950:intron 20.0%
!! TATAAGACAAGTATATCAAT+TGG - chr4_1:629549-629568 None:intergenic 20.0%
!!! TTGAATATTTTATATGGTCA+TGG + chr4_1:629690-629709 Msa0527950:intron 20.0%
!!! GAAACTTTTTTTTCTTTTCT+TGG - chr4_1:629933-629952 None:intergenic 20.0%
!!! TTTTTTGTTGTTCTAATTGT+TGG + chr4_1:630041-630060 Msa0527950:intron 20.0%
!! TTATTATTCTGACATTTACT+TGG - chr4_1:630408-630427 None:intergenic 20.0%
! GAATCAAATGAAAACGAAAA+CGG - chr4_1:626675-626694 None:intergenic 25.0%
! AGAATCTAACCATATGTATT+CGG - chr4_1:626839-626858 None:intergenic 25.0%
! AAAAGAGAGAAAATAATCAC+TGG - chr4_1:627112-627131 None:intergenic 25.0%
!!! TTTAATATCATGGTTTGGTT+TGG - chr4_1:627460-627479 None:intergenic 25.0%
!! TTGTTGTATGATTTGTGATT+AGG + chr4_1:628586-628605 Msa0527950:intron 25.0%
! TGCACAATCATATAAGAAAA+TGG + chr4_1:628755-628774 Msa0527950:intron 25.0%
!! TGGTGAATTTTTATTGTCAT+TGG + chr4_1:628899-628918 Msa0527950:intron 25.0%
! AACAAAGAAAGTTAGTTAGT+TGG - chr4_1:629394-629413 None:intergenic 25.0%
! GAATAACTTGATTCAAACTA+GGG - chr4_1:629498-629517 None:intergenic 25.0%
! AGAATAACTTGATTCAAACT+AGG - chr4_1:629499-629518 None:intergenic 25.0%
! AAAAACAAATGTTACAGACT+AGG - chr4_1:630024-630043 None:intergenic 25.0%
!!! ATTTGGTCATTGTTTTTTCT+AGG + chr4_1:630295-630314 Msa0527950:three_prime_UTR 25.0%
!!! TCATTGTTTTTTCTAGGATT+TGG + chr4_1:630301-630320 Msa0527950:three_prime_UTR 25.0%
!! TTGGATTTGTGTTATTGTTA+TGG + chr4_1:630320-630339 Msa0527950:three_prime_UTR 25.0%
!! ACTTTGTTTGTTTGAATTTG+AGG + chr4_1:630348-630367 Msa0527950:three_prime_UTR 25.0%
!!! CTTTTTGGTTGGATTTTTTT+TGG + chr4_1:630558-630577 Msa0527950:three_prime_UTR 25.0%
! TACAATGCATAATATATGCA+AGG - chr4_1:630605-630624 None:intergenic 25.0%
! GAATCAAATGAAAACGAAAA+CGG - chr4_1:626675-626694 None:intergenic 25.0%
! AGAATCTAACCATATGTATT+CGG - chr4_1:626839-626858 None:intergenic 25.0%
! AAAAGAGAGAAAATAATCAC+TGG - chr4_1:627112-627131 None:intergenic 25.0%
!!! TTTAATATCATGGTTTGGTT+TGG - chr4_1:627460-627479 None:intergenic 25.0%
!! TTGTTGTATGATTTGTGATT+AGG + chr4_1:628586-628605 Msa0527950:intron 25.0%
! TGCACAATCATATAAGAAAA+TGG + chr4_1:628755-628774 Msa0527950:intron 25.0%
!! TGGTGAATTTTTATTGTCAT+TGG + chr4_1:628899-628918 Msa0527950:intron 25.0%
! AACAAAGAAAGTTAGTTAGT+TGG - chr4_1:629394-629413 None:intergenic 25.0%
! GAATAACTTGATTCAAACTA+GGG - chr4_1:629498-629517 None:intergenic 25.0%
! AGAATAACTTGATTCAAACT+AGG - chr4_1:629499-629518 None:intergenic 25.0%
! AAAAACAAATGTTACAGACT+AGG - chr4_1:630024-630043 None:intergenic 25.0%
!!! ATTTGGTCATTGTTTTTTCT+AGG + chr4_1:630295-630314 Msa0527950:three_prime_UTR 25.0%
!!! TCATTGTTTTTTCTAGGATT+TGG + chr4_1:630301-630320 Msa0527950:three_prime_UTR 25.0%
!! TTGGATTTGTGTTATTGTTA+TGG + chr4_1:630320-630339 Msa0527950:three_prime_UTR 25.0%
!! ACTTTGTTTGTTTGAATTTG+AGG + chr4_1:630348-630367 Msa0527950:three_prime_UTR 25.0%
!!! CTTTTTGGTTGGATTTTTTT+TGG + chr4_1:630558-630577 Msa0527950:three_prime_UTR 25.0%
! TACAATGCATAATATATGCA+AGG - chr4_1:630605-630624 None:intergenic 25.0%
AAAAGATTATAGAGAAGGTG+AGG + chr4_1:626571-626590 Msa0527950:five_prime_UTR 30.0%
TCAAATCGAATCGAATCTTT+AGG + chr4_1:626701-626720 Msa0527950:five_prime_UTR 30.0%
!! TTTTGTTTGTAAGCATGTGA+GGG - chr4_1:626872-626891 None:intergenic 30.0%
!! TTTTTGTTTGTAAGCATGTG+AGG - chr4_1:626873-626892 None:intergenic 30.0%
! ATGATTCTAGAAAAACGTTG+CGG - chr4_1:627013-627032 None:intergenic 30.0%
!!! TAAGTTGATTTTGGGATATG+AGG + chr4_1:627190-627209 Msa0527950:intron 30.0%
CAGAACAGAAAAATCATCAT+GGG - chr4_1:627244-627263 None:intergenic 30.0%
TCAGAACAGAAAAATCATCA+TGG - chr4_1:627245-627264 None:intergenic 30.0%
!!! TGTTTTTTGATGGTTGAGTA+TGG + chr4_1:627268-627287 Msa0527950:intron 30.0%
!! CGCACAAGATTTTAATATCA+TGG - chr4_1:627470-627489 None:intergenic 30.0%
TTTCTTCATTATGTCAGGAT+TGG + chr4_1:627546-627565 Msa0527950:intron 30.0%
!! GATTTTTACTTATTTGGGGT+TGG + chr4_1:627905-627924 Msa0527950:intron 30.0%
TCTAAATGGATCCTTGAAAA+TGG - chr4_1:627950-627969 None:intergenic 30.0%
!! TTTTCAAGGATCCATTTAGA+AGG + chr4_1:627950-627969 Msa0527950:CDS 30.0%
TTTCAAGGATCCATTTAGAA+GGG + chr4_1:627951-627970 Msa0527950:CDS 30.0%
ATATTGTTACCCCTTCTAAA+TGG - chr4_1:627964-627983 None:intergenic 30.0%
ATACATTTAAGGACTAACGA+CGG - chr4_1:628057-628076 None:intergenic 30.0%
CAGATGATTCAATATACAAC+AGG - chr4_1:628300-628319 None:intergenic 30.0%
! GTATGATTTGTGATTAGGTA+TGG + chr4_1:628591-628610 Msa0527950:intron 30.0%
TCTCATATTATTACCACTCA+TGG - chr4_1:628786-628805 None:intergenic 30.0%
! CTCAATTTGAACTTGTCTTT+TGG + chr4_1:628879-628898 Msa0527950:intron 30.0%
! AATAAGTCAAAAAGAGGTGT+TGG - chr4_1:629347-629366 None:intergenic 30.0%
CCATTCAATAAGTCAAAAAG+AGG - chr4_1:629353-629372 None:intergenic 30.0%
!!! CCTCTTTTTGACTTATTGAA+TGG + chr4_1:629350-629369 Msa0527950:intron 30.0%
! CTTTGTTTATGTTCCAATAG+AGG + chr4_1:629407-629426 Msa0527950:intron 30.0%
!!! AGCAAACCTTAATTGGTTTT+GGG - chr4_1:629468-629487 None:intergenic 30.0%
!! TAGCAAACCTTAATTGGTTT+TGG - chr4_1:629469-629488 None:intergenic 30.0%
TGGAAATAGCAAACCTTAAT+TGG - chr4_1:629475-629494 None:intergenic 30.0%
TATATCAATTGGAAAGGAGT+TGG - chr4_1:629538-629557 None:intergenic 30.0%
GACAAGTATATCAATTGGAA+AGG - chr4_1:629544-629563 None:intergenic 30.0%
TGACATTAACACCTTCTTAT+GGG + chr4_1:629880-629899 Msa0527950:CDS 30.0%
TTATTTGCTTACCCATAAGA+AGG - chr4_1:629894-629913 None:intergenic 30.0%
ATACGTAGTAGACTTGAAAT+CGG - chr4_1:629975-629994 None:intergenic 30.0%
! ATTTCAAGTCTACTACGTAT+GGG + chr4_1:629975-629994 Msa0527950:intron 30.0%
ATCATGGAAGTAACAACATA+TGG - chr4_1:630187-630206 None:intergenic 30.0%
GTTGATTACGCATTAGAATT+TGG + chr4_1:630278-630297 Msa0527950:three_prime_UTR 30.0%
GAAATATGAAACCTATAACG+AGG - chr4_1:630374-630393 None:intergenic 30.0%
!! ACTTATGGACAACTACTTTT+TGG + chr4_1:630543-630562 Msa0527950:three_prime_UTR 30.0%
!!! TTTGGTTGGATTTTTTTTGG+TGG + chr4_1:630561-630580 Msa0527950:three_prime_UTR 30.0%
AAAAGATTATAGAGAAGGTG+AGG + chr4_1:626571-626590 Msa0527950:five_prime_UTR 30.0%
TCAAATCGAATCGAATCTTT+AGG + chr4_1:626701-626720 Msa0527950:five_prime_UTR 30.0%
!! TTTTGTTTGTAAGCATGTGA+GGG - chr4_1:626872-626891 None:intergenic 30.0%
!! TTTTTGTTTGTAAGCATGTG+AGG - chr4_1:626873-626892 None:intergenic 30.0%
! ATGATTCTAGAAAAACGTTG+CGG - chr4_1:627013-627032 None:intergenic 30.0%
!!! TAAGTTGATTTTGGGATATG+AGG + chr4_1:627190-627209 Msa0527950:intron 30.0%
CAGAACAGAAAAATCATCAT+GGG - chr4_1:627244-627263 None:intergenic 30.0%
TCAGAACAGAAAAATCATCA+TGG - chr4_1:627245-627264 None:intergenic 30.0%
!!! TGTTTTTTGATGGTTGAGTA+TGG + chr4_1:627268-627287 Msa0527950:intron 30.0%
!! CGCACAAGATTTTAATATCA+TGG - chr4_1:627470-627489 None:intergenic 30.0%
TTTCTTCATTATGTCAGGAT+TGG + chr4_1:627546-627565 Msa0527950:intron 30.0%
!! GATTTTTACTTATTTGGGGT+TGG + chr4_1:627905-627924 Msa0527950:intron 30.0%
TCTAAATGGATCCTTGAAAA+TGG - chr4_1:627950-627969 None:intergenic 30.0%
!! TTTTCAAGGATCCATTTAGA+AGG + chr4_1:627950-627969 Msa0527950:CDS 30.0%
TTTCAAGGATCCATTTAGAA+GGG + chr4_1:627951-627970 Msa0527950:CDS 30.0%
ATATTGTTACCCCTTCTAAA+TGG - chr4_1:627964-627983 None:intergenic 30.0%
ATACATTTAAGGACTAACGA+CGG - chr4_1:628057-628076 None:intergenic 30.0%
CAGATGATTCAATATACAAC+AGG - chr4_1:628300-628319 None:intergenic 30.0%
! GTATGATTTGTGATTAGGTA+TGG + chr4_1:628591-628610 Msa0527950:intron 30.0%
TCTCATATTATTACCACTCA+TGG - chr4_1:628786-628805 None:intergenic 30.0%
! CTCAATTTGAACTTGTCTTT+TGG + chr4_1:628879-628898 Msa0527950:intron 30.0%
! AATAAGTCAAAAAGAGGTGT+TGG - chr4_1:629347-629366 None:intergenic 30.0%
CCATTCAATAAGTCAAAAAG+AGG - chr4_1:629353-629372 None:intergenic 30.0%
!!! CCTCTTTTTGACTTATTGAA+TGG + chr4_1:629350-629369 Msa0527950:intron 30.0%
! CTTTGTTTATGTTCCAATAG+AGG + chr4_1:629407-629426 Msa0527950:intron 30.0%
!!! AGCAAACCTTAATTGGTTTT+GGG - chr4_1:629468-629487 None:intergenic 30.0%
!! TAGCAAACCTTAATTGGTTT+TGG - chr4_1:629469-629488 None:intergenic 30.0%
TGGAAATAGCAAACCTTAAT+TGG - chr4_1:629475-629494 None:intergenic 30.0%
TATATCAATTGGAAAGGAGT+TGG - chr4_1:629538-629557 None:intergenic 30.0%
GACAAGTATATCAATTGGAA+AGG - chr4_1:629544-629563 None:intergenic 30.0%
TGACATTAACACCTTCTTAT+GGG + chr4_1:629880-629899 Msa0527950:CDS 30.0%
TTATTTGCTTACCCATAAGA+AGG - chr4_1:629894-629913 None:intergenic 30.0%
ATACGTAGTAGACTTGAAAT+CGG - chr4_1:629975-629994 None:intergenic 30.0%
! ATTTCAAGTCTACTACGTAT+GGG + chr4_1:629975-629994 Msa0527950:intron 30.0%
ATCATGGAAGTAACAACATA+TGG - chr4_1:630187-630206 None:intergenic 30.0%
GTTGATTACGCATTAGAATT+TGG + chr4_1:630278-630297 Msa0527950:three_prime_UTR 30.0%
GAAATATGAAACCTATAACG+AGG - chr4_1:630374-630393 None:intergenic 30.0%
!! ACTTATGGACAACTACTTTT+TGG + chr4_1:630543-630562 Msa0527950:three_prime_UTR 30.0%
!!! TTTGGTTGGATTTTTTTTGG+TGG + chr4_1:630561-630580 Msa0527950:three_prime_UTR 30.0%
TAGGAACAGAAAAACCAACT+AGG + chr4_1:626599-626618 Msa0527950:five_prime_UTR 35.0%
!! GGTCTTATTTATAGCCTAGT+TGG - chr4_1:626616-626635 None:intergenic 35.0%
TTGTTGTGAACAGAGAAATG+AGG - chr4_1:626647-626666 None:intergenic 35.0%
!! CAAGGTTGATAAGATCTGAA+AGG - chr4_1:626786-626805 None:intergenic 35.0%
AAATCATCGCCGAATACATA+TGG + chr4_1:626827-626846 Msa0527950:CDS 35.0%
! AGTAGTGTTTTTCGTACGTA+CGG - chr4_1:626945-626964 None:intergenic 35.0%
!!! GTTCTGACTCTGTTTTTTGA+TGG + chr4_1:627258-627277 Msa0527950:intron 35.0%
TATTGTACTTAGTGGTAGAC+TGG - chr4_1:627432-627451 None:intergenic 35.0%
!! TGGTTTGGTATTGTACTTAG+TGG - chr4_1:627440-627459 None:intergenic 35.0%
!! TATCATGGTTTGGTTTGGTT+TGG - chr4_1:627455-627474 None:intergenic 35.0%
ATAACTTCACTATCTTCTCC+AGG - chr4_1:627792-627811 None:intergenic 35.0%
TTCAAGGATCCATTTAGAAG+GGG + chr4_1:627952-627971 Msa0527950:CDS 35.0%
TAGAAGGGGTAACAATATCT+TGG + chr4_1:627966-627985 Msa0527950:CDS 35.0%
GTGTGTCTTGGAAAACATAT+TGG - chr4_1:628163-628182 None:intergenic 35.0%
AGTAGCAACAAAAGATACCA+TGG - chr4_1:628513-628532 None:intergenic 35.0%
ACAGTAAACAAGTGGCAAAA+AGG - chr4_1:628552-628571 None:intergenic 35.0%
ATCAGAACACAGTAAACAAG+TGG - chr4_1:628560-628579 None:intergenic 35.0%
ATTGATGTCTTTCTGCAACA+AGG - chr4_1:628634-628653 None:intergenic 35.0%
TGTTGCAGAAAGACATCAAT+TGG + chr4_1:628634-628653 Msa0527950:CDS 35.0%
AATGTGAGTCAACAATGTCA+CGG - chr4_1:629025-629044 None:intergenic 35.0%
ATCAACATCAGTGGAATCAA+TGG + chr4_1:629068-629087 Msa0527950:CDS 35.0%
GAAAGTTAGTTAGTTGGAGA+AGG - chr4_1:629388-629407 None:intergenic 35.0%
!!! CTTAATTGGTTTTGGGTCAA+AGG - chr4_1:629461-629480 None:intergenic 35.0%
CTTTGACCCAAAACCAATTA+AGG + chr4_1:629459-629478 Msa0527950:CDS 35.0%
TAACTTGATTCAAACTAGGG+TGG - chr4_1:629495-629514 None:intergenic 35.0%
TAATGCAAAACTAGGGTGAT+TGG + chr4_1:629600-629619 Msa0527950:intron 35.0%
TTGAAAGCAATTGAGAAGCT+TGG + chr4_1:629782-629801 Msa0527950:CDS 35.0%
TGAAAGCAATTGAGAAGCTT+GGG + chr4_1:629783-629802 Msa0527950:CDS 35.0%
CTGACATTAACACCTTCTTA+TGG + chr4_1:629879-629898 Msa0527950:CDS 35.0%
! GATTTCAAGTCTACTACGTA+TGG + chr4_1:629974-629993 Msa0527950:intron 35.0%
! TTTCAAGTCTACTACGTATG+GGG + chr4_1:629976-629995 Msa0527950:intron 35.0%
TATGGATCCATGTTAGATGA+TGG - chr4_1:630169-630188 None:intergenic 35.0%
AAAAATGCCAATGACCATGA+GGG + chr4_1:630475-630494 Msa0527950:three_prime_UTR 35.0%
!!! ATGGACAACTACTTTTTGGT+TGG + chr4_1:630547-630566 Msa0527950:three_prime_UTR 35.0%
!!! GTTGGATTTTTTTTGGTGGT+CGG + chr4_1:630565-630584 Msa0527950:three_prime_UTR 35.0%
!!! TTGGATTTTTTTTGGTGGTC+GGG + chr4_1:630566-630585 Msa0527950:three_prime_UTR 35.0%
CATAATATATGCAAGGTCTG+GGG - chr4_1:630598-630617 None:intergenic 35.0%
GCATAATATATGCAAGGTCT+GGG - chr4_1:630599-630618 None:intergenic 35.0%
TGCATAATATATGCAAGGTC+TGG - chr4_1:630600-630619 None:intergenic 35.0%
TAGGAACAGAAAAACCAACT+AGG + chr4_1:626599-626618 Msa0527950:five_prime_UTR 35.0%
!! GGTCTTATTTATAGCCTAGT+TGG - chr4_1:626616-626635 None:intergenic 35.0%
TTGTTGTGAACAGAGAAATG+AGG - chr4_1:626647-626666 None:intergenic 35.0%
!! CAAGGTTGATAAGATCTGAA+AGG - chr4_1:626786-626805 None:intergenic 35.0%
AAATCATCGCCGAATACATA+TGG + chr4_1:626827-626846 Msa0527950:CDS 35.0%
! AGTAGTGTTTTTCGTACGTA+CGG - chr4_1:626945-626964 None:intergenic 35.0%
!!! GTTCTGACTCTGTTTTTTGA+TGG + chr4_1:627258-627277 Msa0527950:intron 35.0%
TATTGTACTTAGTGGTAGAC+TGG - chr4_1:627432-627451 None:intergenic 35.0%
!! TGGTTTGGTATTGTACTTAG+TGG - chr4_1:627440-627459 None:intergenic 35.0%
!! TATCATGGTTTGGTTTGGTT+TGG - chr4_1:627455-627474 None:intergenic 35.0%
ATAACTTCACTATCTTCTCC+AGG - chr4_1:627792-627811 None:intergenic 35.0%
TTCAAGGATCCATTTAGAAG+GGG + chr4_1:627952-627971 Msa0527950:CDS 35.0%
TAGAAGGGGTAACAATATCT+TGG + chr4_1:627966-627985 Msa0527950:CDS 35.0%
GTGTGTCTTGGAAAACATAT+TGG - chr4_1:628163-628182 None:intergenic 35.0%
AGTAGCAACAAAAGATACCA+TGG - chr4_1:628513-628532 None:intergenic 35.0%
ACAGTAAACAAGTGGCAAAA+AGG - chr4_1:628552-628571 None:intergenic 35.0%
ATCAGAACACAGTAAACAAG+TGG - chr4_1:628560-628579 None:intergenic 35.0%
ATTGATGTCTTTCTGCAACA+AGG - chr4_1:628634-628653 None:intergenic 35.0%
TGTTGCAGAAAGACATCAAT+TGG + chr4_1:628634-628653 Msa0527950:CDS 35.0%
AATGTGAGTCAACAATGTCA+CGG - chr4_1:629025-629044 None:intergenic 35.0%
ATCAACATCAGTGGAATCAA+TGG + chr4_1:629068-629087 Msa0527950:CDS 35.0%
GAAAGTTAGTTAGTTGGAGA+AGG - chr4_1:629388-629407 None:intergenic 35.0%
!!! CTTAATTGGTTTTGGGTCAA+AGG - chr4_1:629461-629480 None:intergenic 35.0%
CTTTGACCCAAAACCAATTA+AGG + chr4_1:629459-629478 Msa0527950:CDS 35.0%
TAACTTGATTCAAACTAGGG+TGG - chr4_1:629495-629514 None:intergenic 35.0%
TAATGCAAAACTAGGGTGAT+TGG + chr4_1:629600-629619 Msa0527950:intron 35.0%
TTGAAAGCAATTGAGAAGCT+TGG + chr4_1:629782-629801 Msa0527950:CDS 35.0%
TGAAAGCAATTGAGAAGCTT+GGG + chr4_1:629783-629802 Msa0527950:CDS 35.0%
CTGACATTAACACCTTCTTA+TGG + chr4_1:629879-629898 Msa0527950:CDS 35.0%
! GATTTCAAGTCTACTACGTA+TGG + chr4_1:629974-629993 Msa0527950:intron 35.0%
! TTTCAAGTCTACTACGTATG+GGG + chr4_1:629976-629995 Msa0527950:intron 35.0%
TATGGATCCATGTTAGATGA+TGG - chr4_1:630169-630188 None:intergenic 35.0%
AAAAATGCCAATGACCATGA+GGG + chr4_1:630475-630494 Msa0527950:three_prime_UTR 35.0%
!!! ATGGACAACTACTTTTTGGT+TGG + chr4_1:630547-630566 Msa0527950:three_prime_UTR 35.0%
!!! GTTGGATTTTTTTTGGTGGT+CGG + chr4_1:630565-630584 Msa0527950:three_prime_UTR 35.0%
!!! TTGGATTTTTTTTGGTGGTC+GGG + chr4_1:630566-630585 Msa0527950:three_prime_UTR 35.0%
CATAATATATGCAAGGTCTG+GGG - chr4_1:630598-630617 None:intergenic 35.0%
GCATAATATATGCAAGGTCT+GGG - chr4_1:630599-630618 None:intergenic 35.0%
TGCATAATATATGCAAGGTC+TGG - chr4_1:630600-630619 None:intergenic 35.0%
!!! GGAGAGACATGTTTTGGTTT+TGG - chr4_1:626765-626784 None:intergenic 40.0%
! CTGAAAGGAGAGACATGTTT+TGG - chr4_1:626771-626790 None:intergenic 40.0%
! GATGATTTTCTCGGTGGTTT+CGG - chr4_1:626815-626834 None:intergenic 40.0%
! GTATTCGGCGATGATTTTCT+CGG - chr4_1:626824-626843 None:intergenic 40.0%
! ATTCTAGAAAAACGTTGCGG+TGG - chr4_1:627010-627029 None:intergenic 40.0%
CTTCATTATGTCAGGATTGG+TGG + chr4_1:627549-627568 Msa0527950:intron 40.0%
GAACCATCATAGTTCCACTT+GGG - chr4_1:627753-627772 None:intergenic 40.0%
! GATCCTTGAAAATGGCTTGT+GGG - chr4_1:627942-627961 None:intergenic 40.0%
TTCTGATCCCTAAATGTGTG+AGG - chr4_1:628244-628263 None:intergenic 40.0%
ATCAGGATGGCTGAAAATCT+TGG - chr4_1:628475-628494 None:intergenic 40.0%
! ATGTTGTTGCTGAAGTACCA+TGG + chr4_1:628493-628512 Msa0527950:CDS 40.0%
! AAAGACATCAATTGGCCTCT+TGG + chr4_1:628642-628661 Msa0527950:CDS 40.0%
! TGAAAGTGAGTTTTCACCTG+AGG - chr4_1:628693-628712 None:intergenic 40.0%
CAATAGGGACCATACTATTG+TGG + chr4_1:628975-628994 Msa0527950:intron 40.0%
TACAAAGCCTGTCTTTATGC+CGG + chr4_1:629044-629063 Msa0527950:CDS 40.0%
TAAGTCCAACTTACTTGACC+AGG - chr4_1:629104-629123 None:intergenic 40.0%
! ATGTAGTGGGAATTCCAAGT+TGG + chr4_1:629218-629237 Msa0527950:intron 40.0%
!! ATGGGTTGCTCGTTACATTT+TGG + chr4_1:629274-629293 Msa0527950:CDS 40.0%
CAAAACTAGGGTGATTGGAA+TGG + chr4_1:629605-629624 Msa0527950:intron 40.0%
!! CTTGGTGCTACAGCATTATA+AGG - chr4_1:629729-629748 None:intergenic 40.0%
ACCAAGTCTATGAGAGAAGA+TGG + chr4_1:629743-629762 Msa0527950:CDS 40.0%
ACCATCTTCTCTCATAGACT+TGG - chr4_1:629747-629766 None:intergenic 40.0%
AAGTCTATGAGAGAAGATGG+TGG + chr4_1:629746-629765 Msa0527950:CDS 40.0%
TGTTGTTCTAATTGTTGGCG+TGG + chr4_1:630046-630065 Msa0527950:intron 40.0%
!! CGTGGCTTGTGTTATTTGAA+GGG + chr4_1:630064-630083 Msa0527950:intron 40.0%
! GGAAAGGTTATTTCGAGGAT+AGG + chr4_1:630140-630159 Msa0527950:CDS 40.0%
! AAGGTTATTTCGAGGATAGG+AGG + chr4_1:630143-630162 Msa0527950:CDS 40.0%
TTATGGTTTCCAGAGAATGG+TGG - chr4_1:630218-630237 None:intergenic 40.0%
TACTTCAATGCATGTGTGTG+TGG - chr4_1:630245-630264 None:intergenic 40.0%
! TGAATTTGAGGCCTCGTTAT+AGG + chr4_1:630360-630379 Msa0527950:three_prime_UTR 40.0%
GAAAAATGCCAATGACCATG+AGG + chr4_1:630474-630493 Msa0527950:three_prime_UTR 40.0%
!!! TGGATTTTTTTTGGTGGTCG+GGG + chr4_1:630567-630586 Msa0527950:three_prime_UTR 40.0%
!!! GGAGAGACATGTTTTGGTTT+TGG - chr4_1:626765-626784 None:intergenic 40.0%
! CTGAAAGGAGAGACATGTTT+TGG - chr4_1:626771-626790 None:intergenic 40.0%
! GATGATTTTCTCGGTGGTTT+CGG - chr4_1:626815-626834 None:intergenic 40.0%
! GTATTCGGCGATGATTTTCT+CGG - chr4_1:626824-626843 None:intergenic 40.0%
! ATTCTAGAAAAACGTTGCGG+TGG - chr4_1:627010-627029 None:intergenic 40.0%
CTTCATTATGTCAGGATTGG+TGG + chr4_1:627549-627568 Msa0527950:intron 40.0%
GAACCATCATAGTTCCACTT+GGG - chr4_1:627753-627772 None:intergenic 40.0%
! GATCCTTGAAAATGGCTTGT+GGG - chr4_1:627942-627961 None:intergenic 40.0%
TTCTGATCCCTAAATGTGTG+AGG - chr4_1:628244-628263 None:intergenic 40.0%
ATCAGGATGGCTGAAAATCT+TGG - chr4_1:628475-628494 None:intergenic 40.0%
! ATGTTGTTGCTGAAGTACCA+TGG + chr4_1:628493-628512 Msa0527950:CDS 40.0%
! AAAGACATCAATTGGCCTCT+TGG + chr4_1:628642-628661 Msa0527950:CDS 40.0%
! TGAAAGTGAGTTTTCACCTG+AGG - chr4_1:628693-628712 None:intergenic 40.0%
CAATAGGGACCATACTATTG+TGG + chr4_1:628975-628994 Msa0527950:intron 40.0%
TACAAAGCCTGTCTTTATGC+CGG + chr4_1:629044-629063 Msa0527950:CDS 40.0%
TAAGTCCAACTTACTTGACC+AGG - chr4_1:629104-629123 None:intergenic 40.0%
! ATGTAGTGGGAATTCCAAGT+TGG + chr4_1:629218-629237 Msa0527950:intron 40.0%
!! ATGGGTTGCTCGTTACATTT+TGG + chr4_1:629274-629293 Msa0527950:CDS 40.0%
CAAAACTAGGGTGATTGGAA+TGG + chr4_1:629605-629624 Msa0527950:intron 40.0%
!! CTTGGTGCTACAGCATTATA+AGG - chr4_1:629729-629748 None:intergenic 40.0%
ACCAAGTCTATGAGAGAAGA+TGG + chr4_1:629743-629762 Msa0527950:CDS 40.0%
ACCATCTTCTCTCATAGACT+TGG - chr4_1:629747-629766 None:intergenic 40.0%
AAGTCTATGAGAGAAGATGG+TGG + chr4_1:629746-629765 Msa0527950:CDS 40.0%
TGTTGTTCTAATTGTTGGCG+TGG + chr4_1:630046-630065 Msa0527950:intron 40.0%
!! CGTGGCTTGTGTTATTTGAA+GGG + chr4_1:630064-630083 Msa0527950:intron 40.0%
! GGAAAGGTTATTTCGAGGAT+AGG + chr4_1:630140-630159 Msa0527950:CDS 40.0%
! AAGGTTATTTCGAGGATAGG+AGG + chr4_1:630143-630162 Msa0527950:CDS 40.0%
TTATGGTTTCCAGAGAATGG+TGG - chr4_1:630218-630237 None:intergenic 40.0%
TACTTCAATGCATGTGTGTG+TGG - chr4_1:630245-630264 None:intergenic 40.0%
! TGAATTTGAGGCCTCGTTAT+AGG + chr4_1:630360-630379 Msa0527950:three_prime_UTR 40.0%
GAAAAATGCCAATGACCATG+AGG + chr4_1:630474-630493 Msa0527950:three_prime_UTR 40.0%
!!! TGGATTTTTTTTGGTGGTCG+GGG + chr4_1:630567-630586 Msa0527950:three_prime_UTR 40.0%
TAGAGAAGGTGAGGAAGACT+AGG + chr4_1:626580-626599 Msa0527950:five_prime_UTR 45.0%
ACAGAGAAATGAGGCAGTGT+GGG - chr4_1:626638-626657 None:intergenic 45.0%
AACAGAGAAATGAGGCAGTG+TGG - chr4_1:626639-626658 None:intergenic 45.0%
AGTGGTAGACTGGTAGGTTT+GGG - chr4_1:627422-627441 None:intergenic 45.0%
TAGTGGTAGACTGGTAGGTT+TGG - chr4_1:627423-627442 None:intergenic 45.0%
GTACTTAGTGGTAGACTGGT+AGG - chr4_1:627428-627447 None:intergenic 45.0%
! TATGTCAGGATTGGTGGATC+TGG + chr4_1:627555-627574 Msa0527950:intron 45.0%
CTTCCCAAGTGGAACTATGA+TGG + chr4_1:627747-627766 Msa0527950:CDS 45.0%
GGAACCATCATAGTTCCACT+TGG - chr4_1:627754-627773 None:intergenic 45.0%
AACTATGATGGTTCCAGCAC+AGG + chr4_1:627759-627778 Msa0527950:CDS 45.0%
GGATCCTTGAAAATGGCTTG+TGG - chr4_1:627943-627962 None:intergenic 45.0%
ATGTGTGAGGCGTGTCAATA+TGG - chr4_1:628231-628250 None:intergenic 45.0%
TTGACACGCCTCACACATTT+AGG + chr4_1:628233-628252 Msa0527950:intron 45.0%
TGACACGCCTCACACATTTA+GGG + chr4_1:628234-628253 Msa0527950:intron 45.0%
CTATTGCGAGTTTATGCAGC+TGG + chr4_1:628339-628358 Msa0527950:intron 45.0%
!! TGCAGCTGGTCTTGTTTCAT+TGG + chr4_1:628353-628372 Msa0527950:intron 45.0%
! TGTCTCTTGTTGGTGGGAAT+GGG - chr4_1:628444-628463 None:intergenic 45.0%
! ATGTCTCTTGTTGGTGGGAA+TGG - chr4_1:628445-628464 None:intergenic 45.0%
CTTCAGCAACAACATCAGGA+TGG - chr4_1:628488-628507 None:intergenic 45.0%
GGTACTTCAGCAACAACATC+AGG - chr4_1:628492-628511 None:intergenic 45.0%
! ACATCAATTGGCCTCTTGGT+TGG + chr4_1:628646-628665 Msa0527950:CDS 45.0%
GAAAATGGTGTGACCATGAG+TGG + chr4_1:628770-628789 Msa0527950:intron 45.0%
GATTCCACTGATGTTGATGC+CGG - chr4_1:629066-629085 None:intergenic 45.0%
ATCAATGGTGAAGTGATGCC+TGG + chr4_1:629083-629102 Msa0527950:CDS 45.0%
TGATGCCTGGTCAAGTAAGT+TGG + chr4_1:629096-629115 Msa0527950:intron 45.0%
! TCTCTGCTGGTGATGAGATA+TGG + chr4_1:629255-629274 Msa0527950:CDS 45.0%
! CTCTGCTGGTGATGAGATAT+GGG + chr4_1:629256-629275 Msa0527950:CDS 45.0%
! GGTTGCTCGTTACATTTTGG+AGG + chr4_1:629277-629296 Msa0527950:CDS 45.0%
!! GCTCGTTACATTTTGGAGGT+AGG + chr4_1:629281-629300 Msa0527950:intron 45.0%
!! CGTTACATTTTGGAGGTAGG+TGG + chr4_1:629284-629303 Msa0527950:intron 45.0%
GTTCCAATAGAGGATCACTG+AGG + chr4_1:629417-629436 Msa0527950:intron 45.0%
CAACCTCAGTGATCCTCTAT+TGG - chr4_1:629423-629442 None:intergenic 45.0%
CTGGTGCTCACACAAATTAC+AGG + chr4_1:629630-629649 Msa0527950:CDS 45.0%
! AAGGAGCACATTGCTGCTTA+TGG + chr4_1:629815-629834 Msa0527950:CDS 45.0%
! CACATTGCTGCTTATGGAGA+AGG + chr4_1:629821-629840 Msa0527950:CDS 45.0%
! ACTACGTATGGGGATTAGTG+CGG + chr4_1:629986-630005 Msa0527950:intron 45.0%
!! GCGTGGCTTGTGTTATTTGA+AGG + chr4_1:630063-630082 Msa0527950:intron 45.0%
!! TGCGTCGATTAGAGTTGGAA+GGG + chr4_1:630102-630121 Msa0527950:CDS 45.0%
! AGCAGGGAAAGGTTATTTCG+AGG + chr4_1:630135-630154 Msa0527950:CDS 45.0%
TAGGAGGCCATCATCTAACA+TGG + chr4_1:630159-630178 Msa0527950:CDS 45.0%
! AATGGTGGTGTCTGCAATCA+TGG - chr4_1:630203-630222 None:intergenic 45.0%
GGCTTATGGTTTCCAGAGAA+TGG - chr4_1:630221-630240 None:intergenic 45.0%
TTCAATGCATGTGTGTGTGG+TGG - chr4_1:630242-630261 None:intergenic 45.0%
TAGAGAAGGTGAGGAAGACT+AGG + chr4_1:626580-626599 Msa0527950:five_prime_UTR 45.0%
ACAGAGAAATGAGGCAGTGT+GGG - chr4_1:626638-626657 None:intergenic 45.0%
AACAGAGAAATGAGGCAGTG+TGG - chr4_1:626639-626658 None:intergenic 45.0%
AGTGGTAGACTGGTAGGTTT+GGG - chr4_1:627422-627441 None:intergenic 45.0%
TAGTGGTAGACTGGTAGGTT+TGG - chr4_1:627423-627442 None:intergenic 45.0%
GTACTTAGTGGTAGACTGGT+AGG - chr4_1:627428-627447 None:intergenic 45.0%
! TATGTCAGGATTGGTGGATC+TGG + chr4_1:627555-627574 Msa0527950:intron 45.0%
CTTCCCAAGTGGAACTATGA+TGG + chr4_1:627747-627766 Msa0527950:CDS 45.0%
GGAACCATCATAGTTCCACT+TGG - chr4_1:627754-627773 None:intergenic 45.0%
AACTATGATGGTTCCAGCAC+AGG + chr4_1:627759-627778 Msa0527950:CDS 45.0%
GGATCCTTGAAAATGGCTTG+TGG - chr4_1:627943-627962 None:intergenic 45.0%
ATGTGTGAGGCGTGTCAATA+TGG - chr4_1:628231-628250 None:intergenic 45.0%
TTGACACGCCTCACACATTT+AGG + chr4_1:628233-628252 Msa0527950:intron 45.0%
TGACACGCCTCACACATTTA+GGG + chr4_1:628234-628253 Msa0527950:intron 45.0%
CTATTGCGAGTTTATGCAGC+TGG + chr4_1:628339-628358 Msa0527950:intron 45.0%
!! TGCAGCTGGTCTTGTTTCAT+TGG + chr4_1:628353-628372 Msa0527950:intron 45.0%
! TGTCTCTTGTTGGTGGGAAT+GGG - chr4_1:628444-628463 None:intergenic 45.0%
! ATGTCTCTTGTTGGTGGGAA+TGG - chr4_1:628445-628464 None:intergenic 45.0%
CTTCAGCAACAACATCAGGA+TGG - chr4_1:628488-628507 None:intergenic 45.0%
GGTACTTCAGCAACAACATC+AGG - chr4_1:628492-628511 None:intergenic 45.0%
! ACATCAATTGGCCTCTTGGT+TGG + chr4_1:628646-628665 Msa0527950:CDS 45.0%
GAAAATGGTGTGACCATGAG+TGG + chr4_1:628770-628789 Msa0527950:intron 45.0%
GATTCCACTGATGTTGATGC+CGG - chr4_1:629066-629085 None:intergenic 45.0%
ATCAATGGTGAAGTGATGCC+TGG + chr4_1:629083-629102 Msa0527950:CDS 45.0%
TGATGCCTGGTCAAGTAAGT+TGG + chr4_1:629096-629115 Msa0527950:intron 45.0%
! TCTCTGCTGGTGATGAGATA+TGG + chr4_1:629255-629274 Msa0527950:CDS 45.0%
! CTCTGCTGGTGATGAGATAT+GGG + chr4_1:629256-629275 Msa0527950:CDS 45.0%
! GGTTGCTCGTTACATTTTGG+AGG + chr4_1:629277-629296 Msa0527950:CDS 45.0%
!! GCTCGTTACATTTTGGAGGT+AGG + chr4_1:629281-629300 Msa0527950:intron 45.0%
!! CGTTACATTTTGGAGGTAGG+TGG + chr4_1:629284-629303 Msa0527950:intron 45.0%
GTTCCAATAGAGGATCACTG+AGG + chr4_1:629417-629436 Msa0527950:intron 45.0%
CAACCTCAGTGATCCTCTAT+TGG - chr4_1:629423-629442 None:intergenic 45.0%
CTGGTGCTCACACAAATTAC+AGG + chr4_1:629630-629649 Msa0527950:CDS 45.0%
! AAGGAGCACATTGCTGCTTA+TGG + chr4_1:629815-629834 Msa0527950:CDS 45.0%
! CACATTGCTGCTTATGGAGA+AGG + chr4_1:629821-629840 Msa0527950:CDS 45.0%
! ACTACGTATGGGGATTAGTG+CGG + chr4_1:629986-630005 Msa0527950:intron 45.0%
!! GCGTGGCTTGTGTTATTTGA+AGG + chr4_1:630063-630082 Msa0527950:intron 45.0%
!! TGCGTCGATTAGAGTTGGAA+GGG + chr4_1:630102-630121 Msa0527950:CDS 45.0%
! AGCAGGGAAAGGTTATTTCG+AGG + chr4_1:630135-630154 Msa0527950:CDS 45.0%
TAGGAGGCCATCATCTAACA+TGG + chr4_1:630159-630178 Msa0527950:CDS 45.0%
! AATGGTGGTGTCTGCAATCA+TGG - chr4_1:630203-630222 None:intergenic 45.0%
GGCTTATGGTTTCCAGAGAA+TGG - chr4_1:630221-630240 None:intergenic 45.0%
TTCAATGCATGTGTGTGTGG+TGG - chr4_1:630242-630261 None:intergenic 45.0%
!! TAATTTATTGAAAATATAAA+TGG + chr4_1:627676-627695 Msa0527950:intron 5.0%
!! TAATTTATTGAAAATATAAA+TGG + chr4_1:627676-627695 Msa0527950:intron 5.0%
CAGAGAAATGAGGCAGTGTG+GGG - chr4_1:626637-626656 None:intergenic 50.0%
! TTTTCTCGGTGGTTTCGGAG+AGG - chr4_1:626810-626829 None:intergenic 50.0%
! TTCGGCGATGATTTTCTCGG+TGG - chr4_1:626821-626840 None:intergenic 50.0%
! CAGGATTGGTGGATCTGGTT+TGG + chr4_1:627560-627579 Msa0527950:intron 50.0%
!! GTGGATCTGGTTTGGACTTG+AGG + chr4_1:627568-627587 Msa0527950:CDS 50.0%
TGGACTTGAGGAGCAAAGCA+AGG + chr4_1:627580-627599 Msa0527950:CDS 50.0%
GGACTTGAGGAGCAAAGCAA+GGG + chr4_1:627581-627600 Msa0527950:CDS 50.0%
!! TTTTGGGTGCAGACTCTACC+AGG + chr4_1:627702-627721 Msa0527950:intron 50.0%
AGCTGTGAAGGGTCAGTAAC+TGG - chr4_1:627729-627748 None:intergenic 50.0%
TCCACTTGGGAAGCTGTGAA+GGG - chr4_1:627740-627759 None:intergenic 50.0%
TTCCACTTGGGAAGCTGTGA+AGG - chr4_1:627741-627760 None:intergenic 50.0%
!! CAGCCCACAAGCCATTTTCA+AGG + chr4_1:627936-627955 Msa0527950:intron 50.0%
CGAGTGTGTCTTGTGTGTCT+TGG - chr4_1:628175-628194 None:intergenic 50.0%
TGTGATGCATACACTCCAGC+TGG + chr4_1:628414-628433 Msa0527950:CDS 50.0%
GCTGCATGTCTCTTGTTGGT+GGG - chr4_1:628450-628469 None:intergenic 50.0%
AGCTGCATGTCTCTTGTTGG+TGG - chr4_1:628451-628470 None:intergenic 50.0%
! TGAGTTTTCACCTGAGGTCC+AGG - chr4_1:628687-628706 None:intergenic 50.0%
GGACCATACTATTGTGGTGC+TGG + chr4_1:628981-629000 Msa0527950:CDS 50.0%
GCACCAGCACCACAATAGTA+TGG - chr4_1:628987-629006 None:intergenic 50.0%
GTTGATGCCGGCATAAAGAC+AGG - chr4_1:629054-629073 None:intergenic 50.0%
TATGCCGGCATCAACATCAG+TGG + chr4_1:629059-629078 Msa0527950:CDS 50.0%
!! TTCCAAGTTGGTCCCTCAGT+TGG + chr4_1:629230-629249 Msa0527950:CDS 50.0%
TACCAACTGAGGGACCAACT+TGG - chr4_1:629235-629254 None:intergenic 50.0%
CCAGCAGAGATACCAACTGA+GGG - chr4_1:629245-629264 None:intergenic 50.0%
ACCAGCAGAGATACCAACTG+AGG - chr4_1:629246-629265 None:intergenic 50.0%
TAGAGGATCACTGAGGTTGC+TGG + chr4_1:629424-629443 Msa0527950:intron 50.0%
TAGGGTGATTGGAATGGTGC+TGG + chr4_1:629611-629630 Msa0527950:intron 50.0%
! GAAGCTTGGGAAGAAGCACA+AGG + chr4_1:629796-629815 Msa0527950:CDS 50.0%
GCAACGAGCGTAGATTGACA+GGG + chr4_1:629843-629862 Msa0527950:CDS 50.0%
! GTATGGGGATTAGTGCGGTT+GGG + chr4_1:629991-630010 Msa0527950:intron 50.0%
! TATGGGGATTAGTGCGGTTG+GGG + chr4_1:629992-630011 Msa0527950:intron 50.0%
!! TTGAAGGGTGTTGCAAACCG+TGG + chr4_1:630079-630098 Msa0527950:intron 50.0%
CAACTCTAATCGACGCACCA+CGG - chr4_1:630099-630118 None:intergenic 50.0%
!! GTGCGTCGATTAGAGTTGGA+AGG + chr4_1:630101-630120 Msa0527950:CDS 50.0%
GAAGGGACACAGAGAAAGCA+GGG + chr4_1:630119-630138 Msa0527950:CDS 50.0%
GACACAGAGAAAGCAGGGAA+AGG + chr4_1:630124-630143 Msa0527950:CDS 50.0%
TTGCAGACACCACCATTCTC+TGG + chr4_1:630206-630225 Msa0527950:CDS 50.0%
CATGTGTGTGTGGTGGCTTA+TGG - chr4_1:630235-630254 None:intergenic 50.0%
CCTTCTTCCCTCATGGTCAT+TGG - chr4_1:630485-630504 None:intergenic 50.0%
CCAATGACCATGAGGGAAGA+AGG + chr4_1:630482-630501 Msa0527950:three_prime_UTR 50.0%
ATTCCTGCCTTCTTCCCTCA+TGG - chr4_1:630492-630511 None:intergenic 50.0%
TTGTGAGCTGCTCAGTTGGT+AGG - chr4_1:630628-630647 None:intergenic 50.0%
TACCAACTGAGCAGCTCACA+AGG + chr4_1:630627-630646 Msa0527950:three_prime_UTR 50.0%
CAGAGAAATGAGGCAGTGTG+GGG - chr4_1:626637-626656 None:intergenic 50.0%
! TTTTCTCGGTGGTTTCGGAG+AGG - chr4_1:626810-626829 None:intergenic 50.0%
! TTCGGCGATGATTTTCTCGG+TGG - chr4_1:626821-626840 None:intergenic 50.0%
! CAGGATTGGTGGATCTGGTT+TGG + chr4_1:627560-627579 Msa0527950:intron 50.0%
!! GTGGATCTGGTTTGGACTTG+AGG + chr4_1:627568-627587 Msa0527950:CDS 50.0%
TGGACTTGAGGAGCAAAGCA+AGG + chr4_1:627580-627599 Msa0527950:CDS 50.0%
GGACTTGAGGAGCAAAGCAA+GGG + chr4_1:627581-627600 Msa0527950:CDS 50.0%
!! TTTTGGGTGCAGACTCTACC+AGG + chr4_1:627702-627721 Msa0527950:intron 50.0%
AGCTGTGAAGGGTCAGTAAC+TGG - chr4_1:627729-627748 None:intergenic 50.0%
TCCACTTGGGAAGCTGTGAA+GGG - chr4_1:627740-627759 None:intergenic 50.0%
TTCCACTTGGGAAGCTGTGA+AGG - chr4_1:627741-627760 None:intergenic 50.0%
!! CAGCCCACAAGCCATTTTCA+AGG + chr4_1:627936-627955 Msa0527950:intron 50.0%
CGAGTGTGTCTTGTGTGTCT+TGG - chr4_1:628175-628194 None:intergenic 50.0%
TGTGATGCATACACTCCAGC+TGG + chr4_1:628414-628433 Msa0527950:CDS 50.0%
GCTGCATGTCTCTTGTTGGT+GGG - chr4_1:628450-628469 None:intergenic 50.0%
AGCTGCATGTCTCTTGTTGG+TGG - chr4_1:628451-628470 None:intergenic 50.0%
! TGAGTTTTCACCTGAGGTCC+AGG - chr4_1:628687-628706 None:intergenic 50.0%
GGACCATACTATTGTGGTGC+TGG + chr4_1:628981-629000 Msa0527950:CDS 50.0%
GCACCAGCACCACAATAGTA+TGG - chr4_1:628987-629006 None:intergenic 50.0%
GTTGATGCCGGCATAAAGAC+AGG - chr4_1:629054-629073 None:intergenic 50.0%
TATGCCGGCATCAACATCAG+TGG + chr4_1:629059-629078 Msa0527950:CDS 50.0%
!! TTCCAAGTTGGTCCCTCAGT+TGG + chr4_1:629230-629249 Msa0527950:CDS 50.0%
TACCAACTGAGGGACCAACT+TGG - chr4_1:629235-629254 None:intergenic 50.0%
CCAGCAGAGATACCAACTGA+GGG - chr4_1:629245-629264 None:intergenic 50.0%
ACCAGCAGAGATACCAACTG+AGG - chr4_1:629246-629265 None:intergenic 50.0%
TAGAGGATCACTGAGGTTGC+TGG + chr4_1:629424-629443 Msa0527950:intron 50.0%
TAGGGTGATTGGAATGGTGC+TGG + chr4_1:629611-629630 Msa0527950:intron 50.0%
! GAAGCTTGGGAAGAAGCACA+AGG + chr4_1:629796-629815 Msa0527950:CDS 50.0%
GCAACGAGCGTAGATTGACA+GGG + chr4_1:629843-629862 Msa0527950:CDS 50.0%
! GTATGGGGATTAGTGCGGTT+GGG + chr4_1:629991-630010 Msa0527950:intron 50.0%
! TATGGGGATTAGTGCGGTTG+GGG + chr4_1:629992-630011 Msa0527950:intron 50.0%
!! TTGAAGGGTGTTGCAAACCG+TGG + chr4_1:630079-630098 Msa0527950:intron 50.0%
CAACTCTAATCGACGCACCA+CGG - chr4_1:630099-630118 None:intergenic 50.0%
!! GTGCGTCGATTAGAGTTGGA+AGG + chr4_1:630101-630120 Msa0527950:CDS 50.0%
GAAGGGACACAGAGAAAGCA+GGG + chr4_1:630119-630138 Msa0527950:CDS 50.0%
GACACAGAGAAAGCAGGGAA+AGG + chr4_1:630124-630143 Msa0527950:CDS 50.0%
TTGCAGACACCACCATTCTC+TGG + chr4_1:630206-630225 Msa0527950:CDS 50.0%
CATGTGTGTGTGGTGGCTTA+TGG - chr4_1:630235-630254 None:intergenic 50.0%
CCTTCTTCCCTCATGGTCAT+TGG - chr4_1:630485-630504 None:intergenic 50.0%
CCAATGACCATGAGGGAAGA+AGG + chr4_1:630482-630501 Msa0527950:three_prime_UTR 50.0%
ATTCCTGCCTTCTTCCCTCA+TGG - chr4_1:630492-630511 None:intergenic 50.0%
TTGTGAGCTGCTCAGTTGGT+AGG - chr4_1:630628-630647 None:intergenic 50.0%
TACCAACTGAGCAGCTCACA+AGG + chr4_1:630627-630646 Msa0527950:three_prime_UTR 50.0%
GAAGGGTCAGTAACTGGACC+TGG - chr4_1:627723-627742 None:intergenic 55.0%
ACCCTTCACAGCTTCCCAAG+TGG + chr4_1:627736-627755 Msa0527950:CDS 55.0%
GGCAGCTGCATGTCTCTTGT+TGG - chr4_1:628454-628473 None:intergenic 55.0%
!!! TGGCCAGTTGGTGGTTTTCC+TGG + chr4_1:628666-628685 Msa0527950:CDS 55.0%
GGTCCAGGAAAACCACCAAC+TGG - chr4_1:628672-628691 None:intergenic 55.0%
! TGGTGGTTTTCCTGGACCTC+AGG + chr4_1:628674-628693 Msa0527950:CDS 55.0%
!! TTGTGGTGCTGGTGCTGACA+AGG + chr4_1:628992-629011 Msa0527950:CDS 55.0%
!! GCTGGTGCTGACAAGGCATT+TGG + chr4_1:628999-629018 Msa0527950:CDS 55.0%
! CCCTCAGTTGGTATCTCTGC+TGG + chr4_1:629242-629261 Msa0527950:CDS 55.0%
GATCACTGAGGTTGCTGGTG+TGG + chr4_1:629429-629448 Msa0527950:CDS 55.0%
GGCAACGAGCGTAGATTGAC+AGG + chr4_1:629842-629861 Msa0527950:CDS 55.0%
! CGTATGGGGATTAGTGCGGT+TGG + chr4_1:629990-630009 Msa0527950:intron 55.0%
!! CGTGGTGCGTCGATTAGAGT+TGG + chr4_1:630097-630116 Msa0527950:CDS 55.0%
GGAAGGGACACAGAGAAAGC+AGG + chr4_1:630118-630137 Msa0527950:CDS 55.0%
TGACCATGAGGGAAGAAGGC+AGG + chr4_1:630486-630505 Msa0527950:three_prime_UTR 55.0%
GTCCTTGTGAGCTGCTCAGT+TGG - chr4_1:630632-630651 None:intergenic 55.0%
GAAGGGTCAGTAACTGGACC+TGG - chr4_1:627723-627742 None:intergenic 55.0%
ACCCTTCACAGCTTCCCAAG+TGG + chr4_1:627736-627755 Msa0527950:CDS 55.0%
GGCAGCTGCATGTCTCTTGT+TGG - chr4_1:628454-628473 None:intergenic 55.0%
!!! TGGCCAGTTGGTGGTTTTCC+TGG + chr4_1:628666-628685 Msa0527950:CDS 55.0%
GGTCCAGGAAAACCACCAAC+TGG - chr4_1:628672-628691 None:intergenic 55.0%
! TGGTGGTTTTCCTGGACCTC+AGG + chr4_1:628674-628693 Msa0527950:CDS 55.0%
!! TTGTGGTGCTGGTGCTGACA+AGG + chr4_1:628992-629011 Msa0527950:CDS 55.0%
!! GCTGGTGCTGACAAGGCATT+TGG + chr4_1:628999-629018 Msa0527950:CDS 55.0%
! CCCTCAGTTGGTATCTCTGC+TGG + chr4_1:629242-629261 Msa0527950:CDS 55.0%
GATCACTGAGGTTGCTGGTG+TGG + chr4_1:629429-629448 Msa0527950:CDS 55.0%
GGCAACGAGCGTAGATTGAC+AGG + chr4_1:629842-629861 Msa0527950:CDS 55.0%
! CGTATGGGGATTAGTGCGGT+TGG + chr4_1:629990-630009 Msa0527950:intron 55.0%
!! CGTGGTGCGTCGATTAGAGT+TGG + chr4_1:630097-630116 Msa0527950:CDS 55.0%
GGAAGGGACACAGAGAAAGC+AGG + chr4_1:630118-630137 Msa0527950:CDS 55.0%
TGACCATGAGGGAAGAAGGC+AGG + chr4_1:630486-630505 Msa0527950:three_prime_UTR 55.0%
GTCCTTGTGAGCTGCTCAGT+TGG - chr4_1:630632-630651 None:intergenic 55.0%
CGGTGGTTTCGGAGAGGTCA+AGG - chr4_1:626804-626823 None:intergenic 60.0%
TCCAGCACAGGTCAAGCTCC+TGG + chr4_1:627771-627790 Msa0527950:CDS 60.0%
TCCAGGAGCTTGACCTGTGC+TGG - chr4_1:627775-627794 None:intergenic 60.0%
! GTGGGAATGGGTTCTCCAGC+TGG - chr4_1:628432-628451 None:intergenic 60.0%
! TGGCCTCTTGGTTGGCCAGT+TGG + chr4_1:628654-628673 Msa0527950:CDS 60.0%
CCACCAACTGGCCAACCAAG+AGG - chr4_1:628660-628679 None:intergenic 60.0%
! CCTCTTGGTTGGCCAGTTGG+TGG + chr4_1:628657-628676 Msa0527950:CDS 60.0%
CGGTGGTTTCGGAGAGGTCA+AGG - chr4_1:626804-626823 None:intergenic 60.0%
TCCAGCACAGGTCAAGCTCC+TGG + chr4_1:627771-627790 Msa0527950:CDS 60.0%
TCCAGGAGCTTGACCTGTGC+TGG - chr4_1:627775-627794 None:intergenic 60.0%
! GTGGGAATGGGTTCTCCAGC+TGG - chr4_1:628432-628451 None:intergenic 60.0%
! TGGCCTCTTGGTTGGCCAGT+TGG + chr4_1:628654-628673 Msa0527950:CDS 60.0%
CCACCAACTGGCCAACCAAG+AGG - chr4_1:628660-628679 None:intergenic 60.0%
! CCTCTTGGTTGGCCAGTTGG+TGG + chr4_1:628657-628676 Msa0527950:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 626570 630651 626570 ID=Msa0527950;Name=Msa0527950
chr4_1 mRNA 626570 630651 626570 ID=Msa0527950-mRNA-1;Parent=Msa0527950;Name=Msa0527950-mRNA-1;_AED=0.11;_eAED=0.11;_QI=205|1|1|1|1|1|12|414|356
chr4_1 exon 626570 626848 626570 ID=Msa0527950-mRNA-1:exon:118;Parent=Msa0527950-mRNA-1
chr4_1 exon 627563 627602 627563 ID=Msa0527950-mRNA-1:exon:119;Parent=Msa0527950-mRNA-1
chr4_1 exon 627714 627817 627714 ID=Msa0527950-mRNA-1:exon:120;Parent=Msa0527950-mRNA-1
chr4_1 exon 627939 627987 627939 ID=Msa0527950-mRNA-1:exon:121;Parent=Msa0527950-mRNA-1
chr4_1 exon 628408 628514 628408 ID=Msa0527950-mRNA-1:exon:122;Parent=Msa0527950-mRNA-1
chr4_1 exon 628608 628695 628608 ID=Msa0527950-mRNA-1:exon:123;Parent=Msa0527950-mRNA-1
chr4_1 exon 628981 629109 628981 ID=Msa0527950-mRNA-1:exon:124;Parent=Msa0527950-mRNA-1
chr4_1 exon 629224 629298 629224 ID=Msa0527950-mRNA-1:exon:125;Parent=Msa0527950-mRNA-1
chr4_1 exon 629427 629480 629427 ID=Msa0527950-mRNA-1:exon:126;Parent=Msa0527950-mRNA-1
chr4_1 exon 629614 629651 629614 ID=Msa0527950-mRNA-1:exon:127;Parent=Msa0527950-mRNA-1
chr4_1 exon 629742 629901 629742 ID=Msa0527950-mRNA-1:exon:128;Parent=Msa0527950-mRNA-1
chr4_1 exon 630085 630651 630085 ID=Msa0527950-mRNA-1:exon:129;Parent=Msa0527950-mRNA-1
chr4_1 five_prime_UTR 626570 626774 626570 ID=Msa0527950-mRNA-1:five_prime_utr;Parent=Msa0527950-mRNA-1
chr4_1 CDS 626775 626848 626775 ID=Msa0527950-mRNA-1:cds;Parent=Msa0527950-mRNA-1
chr4_1 CDS 627563 627602 627563 ID=Msa0527950-mRNA-1:cds;Parent=Msa0527950-mRNA-1
chr4_1 CDS 627714 627817 627714 ID=Msa0527950-mRNA-1:cds;Parent=Msa0527950-mRNA-1
chr4_1 CDS 627939 627987 627939 ID=Msa0527950-mRNA-1:cds;Parent=Msa0527950-mRNA-1
chr4_1 CDS 628408 628514 628408 ID=Msa0527950-mRNA-1:cds;Parent=Msa0527950-mRNA-1
chr4_1 CDS 628608 628695 628608 ID=Msa0527950-mRNA-1:cds;Parent=Msa0527950-mRNA-1
chr4_1 CDS 628981 629109 628981 ID=Msa0527950-mRNA-1:cds;Parent=Msa0527950-mRNA-1
chr4_1 CDS 629224 629298 629224 ID=Msa0527950-mRNA-1:cds;Parent=Msa0527950-mRNA-1
chr4_1 CDS 629427 629480 629427 ID=Msa0527950-mRNA-1:cds;Parent=Msa0527950-mRNA-1
chr4_1 CDS 629614 629651 629614 ID=Msa0527950-mRNA-1:cds;Parent=Msa0527950-mRNA-1
chr4_1 CDS 629742 629901 629742 ID=Msa0527950-mRNA-1:cds;Parent=Msa0527950-mRNA-1
chr4_1 CDS 630085 630237 630085 ID=Msa0527950-mRNA-1:cds;Parent=Msa0527950-mRNA-1
chr4_1 three_prime_UTR 630238 630651 630238 ID=Msa0527950-mRNA-1:three_prime_utr;Parent=Msa0527950-mRNA-1
Gene Sequence

>Msa0527950

ATGTCTCTCCTTTCAGATCTTATCAACCTTGACCTCTCCGAAACCACCGAGAAAATCATCGCCGAATACATATGGATTGGTGGATCTGGTTTGGACTTGAGGAGCAAAGCAAGGACTCTACCAGGTCCAGTTACTGACCCTTCACAGCTTCCCAAGTGGAACTATGATGGTTCCAGCACAGGTCAAGCTCCTGGAGAAGATAGTGAAGTTATTATCTACCCACAAGCCATTTTCAAGGATCCATTTAGAAGGGGTAACAATATCTTGGTTATGTGTGATGCATACACTCCAGCTGGAGAACCCATTCCCACCAACAAGAGACATGCAGCTGCCAAGATTTTCAGCCATCCTGATGTTGTTGCTGAAGTACCATGGTATGGTATTGAGCAAGAATACACCTTGTTGCAGAAAGACATCAATTGGCCTCTTGGTTGGCCAGTTGGTGGTTTTCCTGGACCTCAGGGACCATACTATTGTGGTGCTGGTGCTGACAAGGCATTTGGCCGTGACATTGTTGACTCACATTACAAAGCCTGTCTTTATGCCGGCATCAACATCAGTGGAATCAATGGTGAAGTGATGCCTGGTCAATGGGAATTCCAAGTTGGTCCCTCAGTTGGTATCTCTGCTGGTGATGAGATATGGGTTGCTCGTTACATTTTGGAGAGGATCACTGAGGTTGCTGGTGTGGTGCTTTCCTTTGACCCAAAACCAATTAAGGGTGATTGGAATGGTGCTGGTGCTCACACAAATTACAGCACCAAGTCTATGAGAGAAGATGGTGGCTATGAAGTCATCTTGAAAGCAATTGAGAAGCTTGGGAAGAAGCACAAGGAGCACATTGCTGCTTATGGAGAAGGCAACGAGCGTAGATTGACAGGGCGACATGAGACAGCTGACATTAACACCTTCTTATGGGGTGTTGCAAACCGTGGTGCGTCGATTAGAGTTGGAAGGGACACAGAGAAAGCAGGGAAAGGTTATTTCGAGGATAGGAGGCCATCATCTAACATGGATCCATATGTTGTTACTTCCATGATTGCAGACACCACCATTCTCTGGAAACCATAA

Protein sequence

>Msa0527950

MSLLSDLINLDLSETTEKIIAEYIWIGGSGLDLRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHPDVVAEVPWYGIEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWVARYILERITEVAGVVLSFDPKPIKGDWNGAGAHTNYSTKSMREDGGYEVILKAIEKLGKKHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPSSNMDPYVVTSMIADTTILWKP*