AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1464540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1464540 MtrunA17_Chr7g0244991 97.797 1044 18 2 1 1044 1 1039 0.0 2112
Msa1464540 MtrunA17_Chr3g0078371 57.459 905 328 7 142 1044 115 964 0.0 1030
Msa1464540 MtrunA17_Chr8g0355251 56.838 936 363 8 111 1044 33 929 0.0 1024
Msa1464540 MtrunA17_Chr5g0415271 39.368 950 482 21 124 1044 5 889 0.0 623
Msa1464540 MtrunA17_Chr0c05g0492131 38.811 925 492 22 147 1044 33 910 0.0 608
Msa1464540 MtrunA17_Chr8g0363911 39.320 941 490 20 129 1044 25 909 0.0 606
Msa1464540 MtrunA17_Chr3g0091611 39.570 930 489 23 140 1044 28 909 0.0 605
Msa1464540 MtrunA17_Chr2g0329991 38.316 950 479 18 147 1044 40 934 0.0 587
Msa1464540 MtrunA17_Chr8g0368691 38.724 909 484 20 164 1044 67 930 0.0 583
Msa1464540 MtrunA17_Chr4g0062251 37.621 933 494 21 147 1044 38 917 0.0 581
Msa1464540 MtrunA17_Chr6g0450601 38.015 947 495 20 140 1044 30 926 0.0 580
Msa1464540 MtrunA17_Chr8g0342811 36.859 955 486 24 147 1044 40 934 0.0 564
Msa1464540 MtrunA17_Chr2g0324791 35.099 906 474 20 148 1044 3 803 1.87e-156 492
Msa1464540 MtrunA17_Chr8g0346461 29.213 356 197 12 522 858 352 671 2.48e-17 87.8
Msa1464540 MtrunA17_Chr1g0173111 24.762 420 206 17 471 876 395 718 3.60e-12 70.9
Msa1464540 MtrunA17_Chr8g0382071 28.342 187 102 5 692 871 550 711 9.34e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1464540 AT5G04930.1 57.297 925 334 8 127 1044 40 910 0.0 1037
Msa1464540 AT1G59820.1 39.825 914 480 16 148 1044 36 896 0.0 632
Msa1464540 AT3G27870.2 39.465 935 488 21 140 1044 30 916 0.0 617
Msa1464540 AT1G68710.2 39.978 928 480 23 147 1044 41 921 0.0 617
Msa1464540 AT1G68710.1 39.978 928 480 23 147 1044 41 921 0.0 617
Msa1464540 AT1G68710.3 39.978 928 480 23 147 1044 41 921 0.0 616
Msa1464540 AT3G27870.1 39.465 935 488 21 140 1044 30 916 0.0 615
Msa1464540 AT1G26130.1 38.985 926 488 20 147 1044 41 917 0.0 603
Msa1464540 AT1G26130.2 38.943 927 488 20 147 1044 41 918 0.0 603
Msa1464540 AT1G26130.4 38.943 927 488 20 147 1044 41 918 0.0 603
Msa1464540 AT1G26130.3 38.943 927 488 20 147 1044 41 918 0.0 603
Msa1464540 AT1G17500.2 38.634 937 478 22 147 1044 40 918 0.0 598
Msa1464540 AT1G17500.1 38.634 937 478 22 147 1044 40 918 0.0 598
Msa1464540 AT3G25610.1 38.296 927 494 18 147 1044 39 916 0.0 596
Msa1464540 AT3G13900.2 37.960 951 482 18 148 1044 41 937 0.0 595
Msa1464540 AT3G13900.1 37.960 951 482 18 148 1044 41 937 0.0 594
Msa1464540 AT1G72700.1 37.643 959 469 19 147 1044 40 930 0.0 591
Msa1464540 AT1G72700.3 37.643 959 469 19 147 1044 40 930 0.0 591
Msa1464540 AT1G72700.2 37.643 959 469 19 147 1044 40 930 0.0 591
Msa1464540 AT1G54280.2 37.423 978 494 23 128 1044 19 939 0.0 590
Msa1464540 AT1G54280.3 37.423 978 494 23 128 1044 19 939 0.0 590
Msa1464540 AT1G54280.1 37.423 978 494 23 128 1044 19 939 0.0 590
Msa1464540 AT1G13210.1 37.326 935 495 19 147 1044 37 917 0.0 578
Msa1464540 AT3G13900.3 36.825 926 477 18 148 1019 41 912 4.51e-179 549
Msa1464540 AT3G27870.3 39.508 772 392 18 301 1044 1 725 1.16e-159 498
Msa1464540 AT5G44240.2 35.359 905 473 19 148 1044 3 803 2.52e-155 489
Msa1464540 AT5G44240.1 35.352 908 475 19 145 1044 32 835 4.86e-155 490
Msa1464540 AT4G00900.2 23.796 706 367 30 211 866 93 677 2.36e-15 81.6
Msa1464540 AT4G00900.1 23.796 706 367 30 211 866 93 677 2.36e-15 81.6

Find 272 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCACATTCTCAATCTTTC+AGG 0.073912 tig0044340:+3203 Msa1464540:five_prime_UTR
TACATCAATGTTTAGCATTT+TGG 0.114620 tig0044340:+6471 Msa1464540:CDS
TCGGAAGTTTGTGATGTTTC+TGG 0.123005 tig0044340:+4484 Msa1464540:CDS
CTTCCTCCGTTAGCTGTATT+TGG 0.129917 tig0044340:+4127 Msa1464540:CDS
GAACAAACAAAAGCGGAAAA+AGG 0.156175 tig0044340:-4162 Msa1464540:intergenic
GAATAGTTTGGTTTATATTT+TGG 0.175353 tig0044340:+7113 Msa1464540:CDS
CTATATTCAGACAATGAATT+TGG 0.194747 tig0044340:+4402 Msa1464540:CDS
ATGCAACATGTTCATTAGTT+TGG 0.198994 tig0044340:-5905 Msa1464540:intergenic
ATTAAATATAAATGAAGATT+TGG 0.222083 tig0044340:+5083 Msa1464540:CDS
GGAGGAATGTAGAAATCTTT+TGG 0.238935 tig0044340:+6906 Msa1464540:CDS
ATAATTCTCCATTCACATTA+TGG 0.246894 tig0044340:-3490 Msa1464540:intergenic
TGCTGTTTGACGTAGTTTAC+TGG 0.251673 tig0044340:-6668 Msa1464540:intergenic
GGAAAGAAATATAAGTACTA+TGG 0.266241 tig0044340:+4886 Msa1464540:CDS
TGAAGATCTCACACCATATT+TGG 0.266632 tig0044340:-6941 Msa1464540:intergenic
TGGCCATTGGGATGTGTCTT+TGG 0.267140 tig0044340:+4788 Msa1464540:CDS
TTATATTTCTTTCCTTTATC+CGG 0.280947 tig0044340:-4877 Msa1464540:intergenic
AAATCCACCATCGTTAAGTA+TGG 0.283102 tig0044340:-6004 Msa1464540:intergenic
AAGAACACAGATTGGATAAT+TGG 0.287164 tig0044340:+4625 Msa1464540:CDS
AATGATAAGTATGAGTTTAC+TGG 0.290131 tig0044340:+3989 Msa1464540:CDS
CTTAACAATGGCCCGGATAA+AGG 0.290622 tig0044340:+4865 Msa1464540:CDS
CACCATGGAGTTGGTTAGAT+TGG 0.293086 tig0044340:+4987 Msa1464540:CDS
ATTTATTTATTCAGTTTCAT+AGG 0.294632 tig0044340:+4062 Msa1464540:CDS
AACTGAATAAATAAATTCTT+TGG 0.298422 tig0044340:-4055 Msa1464540:intergenic
CATGGTGATGTAAAGAGATA+TGG 0.301992 tig0044340:-4971 Msa1464540:intergenic
CGGAAGTTTGTGATGTTTCT+GGG 0.311339 tig0044340:+4485 Msa1464540:CDS
GGAATGCCCCACGCGGGAAC+AGG 0.313782 tig0044340:+3766 Msa1464540:CDS
AATTCCATTGAACTCCATAT+TGG 0.316564 tig0044340:-4554 Msa1464540:intergenic
TGCAACATGTTCATTAGTTT+GGG 0.317021 tig0044340:-5904 Msa1464540:intergenic
AAAAGATTACTTCTTGTTCA+TGG 0.322506 tig0044340:+7699 Msa1464540:CDS
TTCCGAAGGGCTAGTGTAGA+TGG 0.326503 tig0044340:+5165 Msa1464540:CDS
TCCTGATTCGCAGTTTCCTT+TGG 0.327600 tig0044340:+3745 Msa1464540:CDS
CATAATTGATGGGAATAGTT+TGG 0.328523 tig0044340:+7101 Msa1464540:CDS
ACTCTGTTTGAGCGGACATC+TGG 0.329979 tig0044340:+6135 Msa1464540:CDS
TCCTGCTGATATGGTCTTGT+TGG 0.332577 tig0044340:+4354 Msa1464540:CDS
TGAGAATAATCGCGAGTCTT+TGG 0.333853 tig0044340:+4246 Msa1464540:CDS
TTAAATCTACTTGGAGCAAC+TGG 0.335245 tig0044340:+6709 Msa1464540:CDS
AGAGAATGTCCGTTGTTATT+CGG 0.337511 tig0044340:+6407 Msa1464540:CDS
GTATATAGATTGGACGTATT+GGG 0.338549 tig0044340:+6358 Msa1464540:intron
CCTGCTGATATGGTCTTGTT+GGG 0.341441 tig0044340:+4355 Msa1464540:CDS
CACTATCACAGAACTCAAAA+AGG 0.343722 tig0044340:-4932 Msa1464540:intergenic
CTGTGAACTCATAAATATTC+CGG 0.346227 tig0044340:-4531 Msa1464540:intergenic
TCTTTCTTCTTCCTTTCTAA+AGG 0.347736 tig0044340:-3055 Msa1464540:intergenic
TTCCTCCGTTAGCTGTATTT+GGG 0.351115 tig0044340:+4128 Msa1464540:CDS
ACAACACAGCACAACCTTAC+AGG 0.351487 tig0044340:-7337 Msa1464540:intergenic
ATCTGAACTGAGAAGTTTGC+AGG 0.352777 tig0044340:-6851 Msa1464540:intergenic
GAAACTAGAGCTTGTTCATC+AGG 0.354399 tig0044340:-6090 Msa1464540:intergenic
TCCAAAGGAAACTGCGAATC+AGG 0.360202 tig0044340:-3746 Msa1464540:intergenic
TATGGGAATCACAGTATTAC+AGG 0.362570 tig0044340:-5986 Msa1464540:intergenic
CAAATTCATTGTCTGAATAT+AGG 0.364282 tig0044340:-4401 Msa1464540:intergenic
CGTAGGGACTCAATGGCTTC+TGG 0.368457 tig0044340:-6760 Msa1464540:intergenic
CTTACTGCTGATAATAGTTC+AGG 0.370014 tig0044340:+5210 Msa1464540:CDS
ACCATGGAGTTGGTTAGATT+GGG 0.374037 tig0044340:+4988 Msa1464540:CDS
ACCTTCCAGTCTGCTTCTCT+TGG 0.384615 tig0044340:-4707 Msa1464540:intergenic
TTATGAGTTCACAGCCAATA+TGG 0.385611 tig0044340:+4540 Msa1464540:CDS
ATCAAGGTCTGGGTTCTTAC+CGG 0.387747 tig0044340:+6793 Msa1464540:CDS
GTTTCTGCAGCCTCTGCATA+TGG 0.387855 tig0044340:+6108 Msa1464540:CDS
TGACCTTGCAATTTCCTGTA+AGG 0.388616 tig0044340:+7323 Msa1464540:CDS
CACTGTCTTCATGTAAAATC+TGG 0.389922 tig0044340:-3931 Msa1464540:intergenic
AGTCAATGAGTTTGCCCAAA+TGG 0.390455 tig0044340:+7037 Msa1464540:CDS
CAACACCAACATCTGCCATT+TGG 0.394142 tig0044340:-7624 Msa1464540:intergenic
GGCAAGCTGGAATCAAGGTC+TGG 0.394994 tig0044340:+6782 Msa1464540:CDS
CTTTATCCGGGCCATTGTTA+AGG 0.397849 tig0044340:-4864 Msa1464540:intergenic
TACTTCTTGTTCATGGGCAC+TGG 0.397858 tig0044340:+7706 Msa1464540:CDS
TGAGACCATTCCTGCTGATA+TGG 0.399151 tig0044340:+4345 Msa1464540:CDS
AACAGGGACGCCTGCGATCG+TGG 0.400222 tig0044340:+3783 Msa1464540:CDS
GGTGACGCCATAGCCAAATA+TGG 0.401147 tig0044340:+6928 Msa1464540:CDS
TTAAATATAAATGAAGATTT+GGG 0.404287 tig0044340:+5084 Msa1464540:CDS
CCATTGGCGCTCATAATTGA+TGG 0.408218 tig0044340:+7090 Msa1464540:CDS
GATGTTGGTGTTGGAATATG+TGG 0.409462 tig0044340:+7615 Msa1464540:CDS
AGCACCTTTACAACATTGTC+AGG 0.411093 tig0044340:-6433 Msa1464540:intergenic
TGAGTGGAAGCTGCAATCTT+TGG 0.413901 tig0044340:-3648 Msa1464540:intergenic
ATGTGTTTGGTTGTGGCCAT+TGG 0.415716 tig0044340:+4775 Msa1464540:CDS
ACTCATTGACTTTGAACCAT+TGG 0.416073 tig0044340:-7025 Msa1464540:intergenic
ACAGGGACGCCTGCGATCGT+GGG 0.416737 tig0044340:+3784 Msa1464540:CDS
GGTATATAGATTGGACGTAT+TGG 0.417227 tig0044340:+6357 Msa1464540:intron
TTGGATCATTGACACGTCAT+TGG 0.417355 tig0044340:-7605 Msa1464540:intergenic
GAGTCTTTGGTTCTTCAGTC+TGG 0.418082 tig0044340:+4259 Msa1464540:CDS
GTGTAGATGGGAAGAATTAC+GGG 0.424580 tig0044340:+5178 Msa1464540:CDS
AAGAGGAGAGAGAAGGAATC+AGG 0.425083 tig0044340:-3175 Msa1464540:intergenic
CACAGAAGCCGTTTCCTGCT+TGG 0.428658 tig0044340:-4455 Msa1464540:intergenic
CATTGGGATGTGTCTTTGGC+TGG 0.430003 tig0044340:+4792 Msa1464540:CDS
GAGAATGTGGAGAGAGAAAG+AGG 0.431418 tig0044340:-3192 Msa1464540:intergenic
TTGTATCATGTGTTTGGTTG+TGG 0.432395 tig0044340:+4768 Msa1464540:CDS
AAGAGAGAGAAGTGTGAAGA+AGG 0.433476 tig0044340:+3077 Msa1464540:five_prime_UTR
TGCTATTAAGGATGGATATG+AGG 0.436563 tig0044340:+4195 Msa1464540:CDS
TTCGACGGCCTCACGGGATC+CGG 0.440525 tig0044340:-3588 Msa1464540:intergenic
ATGCAGCAAATTGTTATAAA+CGG 0.447054 tig0044340:+6874 Msa1464540:CDS
CAAGAGACAGCAATCTCAAT+TGG 0.448382 tig0044340:+6823 Msa1464540:CDS
GTTCATCAGGGGATTCTCCC+TGG 0.448669 tig0044340:-6077 Msa1464540:intergenic
GAATGCAATTTAAATCTACT+TGG 0.448724 tig0044340:+6700 Msa1464540:CDS
ATTGGTGTTGTGGTTTATGC+TGG 0.449240 tig0044340:+4643 Msa1464540:CDS
TGTGTTTGGTTGTGGCCATT+GGG 0.451461 tig0044340:+4776 Msa1464540:CDS
TGCTGTCTCTTGTTTATCAC+CGG 0.454307 tig0044340:-6812 Msa1464540:intergenic
ACGAAAAGGATTGGATTGAT+TGG 0.456011 tig0044340:+3116 Msa1464540:five_prime_UTR
CGCGTTTGCGAATATATTCA+CGG 0.457478 tig0044340:-3462 Msa1464540:intergenic
AGGATGGATATGAGGATTGG+AGG 0.459886 tig0044340:+4203 Msa1464540:CDS
TATATTTCTTTCCTTTATCC+GGG 0.461456 tig0044340:-4876 Msa1464540:intergenic
AGTGTAGATGGGAAGAATTA+CGG 0.464771 tig0044340:+5177 Msa1464540:CDS
AGTTTACTGGGAATGAGATT+CGG 0.466286 tig0044340:+4002 Msa1464540:CDS
TGAATATAGGCAAGCCCACT+TGG 0.468089 tig0044340:-4388 Msa1464540:intergenic
TCCCATCTACACTAGCCCTT+CGG 0.468897 tig0044340:-5167 Msa1464540:intergenic
TGCAGAATGCATTGATTACC+AGG 0.470161 tig0044340:+6059 Msa1464540:CDS
CATCACCGCCACCGGAGATC+CGG 0.470446 tig0044340:+3569 Msa1464540:CDS
TCCAATCTGTGTTCTTCAGT+TGG 0.471538 tig0044340:-4618 Msa1464540:intergenic
GTTGCACCCTTGCAGAAGGC+TGG 0.474620 tig0044340:+7363 Msa1464540:CDS
ATACTTCATGATTGAAGACT+TGG 0.475308 tig0044340:+5017 Msa1464540:CDS
TTAAGGATGGATATGAGGAT+TGG 0.476405 tig0044340:+4200 Msa1464540:CDS
TTGGAATATGTGGGTTGGAA+GGG 0.480190 tig0044340:+7625 Msa1464540:CDS
GTTGGAATATGTGGGTTGGA+AGG 0.480658 tig0044340:+7624 Msa1464540:CDS
TTAGATGTGAGCAGCCGAAC+CGG 0.480660 tig0044340:+4512 Msa1464540:CDS
TCCAGTCTGCTTCTCTTGGA+AGG 0.481700 tig0044340:-4703 Msa1464540:intergenic
TCTTTACATCACCATGGAGT+TGG 0.482950 tig0044340:+4978 Msa1464540:CDS
AGCTTGCCGTAGGGACTCAA+TGG 0.488015 tig0044340:-6767 Msa1464540:intergenic
GCTTTGCCACTCCTCAAGTT+CGG 0.490149 tig0044340:-6608 Msa1464540:intergenic
TGTTGTGGTTTATGCTGGAC+AGG 0.490629 tig0044340:+4648 Msa1464540:CDS
AAAGATTACTTCTTGTTCAT+GGG 0.491129 tig0044340:+7700 Msa1464540:CDS
GGAGTTGTTGAAATTTCAAA+GGG 0.492140 tig0044340:-3839 None:intergenic
AACTCATAAATATTCCGGTT+CGG 0.494331 tig0044340:-4526 None:intergenic
TTAGGTGATGGCCTTTAGAA+AGG 0.494579 tig0044340:+3044 None:intergenic
CACAACTTCCCTGTGGTTGG+AGG 0.495993 tig0044340:-3621 Msa1464540:intergenic
TTGGTTACTGCTATTAAGGA+TGG 0.496382 tig0044340:+4187 Msa1464540:CDS
TGACGAATCCTACGCGATGA+AGG 0.498591 tig0044340:-3887 Msa1464540:intergenic
ACTTCCCTGTGGTTGGAGGT+TGG 0.499209 tig0044340:-3617 Msa1464540:intergenic
AGGAGGAACAAGATCTGGTT+CGG 0.499366 tig0044340:-3540 Msa1464540:intergenic
CTCCTCCAACCTCCAACCAC+AGG 0.499902 tig0044340:+3612 Msa1464540:CDS
GCGATTCTCCATAATGTGAA+TGG 0.500729 tig0044340:+3482 Msa1464540:five_prime_UTR
CTCGTAGGACAATGTTTGAC+TGG 0.501307 tig0044340:-4591 Msa1464540:intergenic
TTTATTTATTCAGTTTCATA+GGG 0.501903 tig0044340:+4063 Msa1464540:CDS
CCTGCGATCGTGGGGTGCAA+TGG 0.502237 tig0044340:+3793 Msa1464540:CDS
ATGACAGGAGGAACAAGATC+TGG 0.503995 tig0044340:-3545 Msa1464540:intergenic
AAGATCACCATGTTCAGCAT+TGG 0.504775 tig0044340:-6995 Msa1464540:intergenic
AAAAGGATTGGATTGATTGG+TGG 0.506124 tig0044340:+3119 Msa1464540:five_prime_UTR
GAGGAGTGGCAAAGCAGGTA+TGG 0.506248 tig0044340:+6616 Msa1464540:CDS
GTTTCCTGACAATGTTGTAA+AGG 0.506798 tig0044340:+6429 Msa1464540:CDS
GAAAGAAATATAAGTACTAT+GGG 0.508440 tig0044340:+4887 Msa1464540:CDS
CATATTGTTATTGACATCAA+TGG 0.511239 tig0044340:+6159 Msa1464540:CDS
GAAGACGAGGTATGCCAAGC+AGG 0.515971 tig0044340:+4441 Msa1464540:CDS
AGCAACGTAACGAAAAGGAT+TGG 0.516563 tig0044340:+3107 Msa1464540:five_prime_UTR
GGTGATCTTGATATTTCCAA+TGG 0.518252 tig0044340:+7009 Msa1464540:CDS
ACATCAATGGTGAGAAACTC+AGG 0.520427 tig0044340:+6172 Msa1464540:CDS
TCCCTGTGGTTGGAGGTTGG+AGG 0.520912 tig0044340:-3614 Msa1464540:intergenic
ATTCAGACAATGAATTTGGA+TGG 0.521305 tig0044340:+4406 Msa1464540:CDS
AACTTGAGGAGTGGCAAAGC+AGG 0.521891 tig0044340:+6611 Msa1464540:CDS
ACAGCCAATATGGAGTTCAA+TGG 0.523912 tig0044340:+4550 Msa1464540:CDS
AGTTTGCCCAAATGGAATCC+AGG 0.523912 tig0044340:+7045 Msa1464540:CDS
TGGAGTTGTTGAAATTTCAA+AGG 0.524083 tig0044340:-3840 Msa1464540:intergenic
ATTGAGTCCCTACGGCAAGC+TGG 0.524109 tig0044340:+6769 Msa1464540:CDS
AGGCGTCCCTGTTCCCGCGT+GGG 0.526645 tig0044340:-3773 Msa1464540:intergenic
CCATCAATTATGAGCGCCAA+TGG 0.527364 tig0044340:-7090 Msa1464540:intergenic
TCCTTCCAAGAGAAGCAGAC+TGG 0.527469 tig0044340:+4702 Msa1464540:CDS
AACATACCTTAACAATGGCC+CGG 0.527647 tig0044340:+4858 Msa1464540:CDS
CCTCACGGGATCCGGATCTC+CGG 0.527732 tig0044340:-3580 Msa1464540:intergenic
AAAGAACTTACCGTCACCTA+TGG 0.529483 tig0044340:-7430 Msa1464540:intergenic
CGGTGGCGGTGATGTATGAC+AGG 0.529725 tig0044340:-3560 Msa1464540:intergenic
ATGAGGATTGGAGGAGACAT+AGG 0.533570 tig0044340:+4212 Msa1464540:CDS
TGACGTGTCAATGATCCAAA+TGG 0.535483 tig0044340:+7590 Msa1464540:CDS
ACTTGGAGCAACTGGAATTG+AGG 0.535763 tig0044340:+6717 Msa1464540:CDS
CAAGACCATATCAGCAGGAA+TGG 0.537086 tig0044340:-4350 Msa1464540:intergenic
CCATTGCACCCCACGATCGC+AGG 0.537391 tig0044340:-3793 Msa1464540:intergenic
AGGAGATTCGACGGCCTCAC+GGG 0.539067 tig0044340:-3594 Msa1464540:intergenic
CTCCGTTAGCTGTATTTGGG+AGG 0.541916 tig0044340:+4131 Msa1464540:CDS
GAGGTATGCCAAGCAGGAAA+CGG 0.542805 tig0044340:+4447 Msa1464540:CDS
GGAAGGGCGTCAAGCTGTGA+TGG 0.544912 tig0044340:+7641 Msa1464540:CDS
GGGATCCGGATCTCCGGTGG+CGG 0.546292 tig0044340:-3574 Msa1464540:intergenic
GCCAACTGAAGAACACAGAT+TGG 0.546447 tig0044340:+4617 Msa1464540:CDS
CATTGGCGCTCATAATTGAT+GGG 0.547165 tig0044340:+7091 Msa1464540:CDS
CCTACGGCAAGCTGGAATCA+AGG 0.547197 tig0044340:+6777 Msa1464540:CDS
CTCTGTTTGAGCGGACATCT+GGG 0.548881 tig0044340:+6136 Msa1464540:CDS
CCCAACAAGACCATATCAGC+AGG 0.550395 tig0044340:-4355 Msa1464540:intergenic
AGAGAGAAAGAGGAGAGAGA+AGG 0.550440 tig0044340:-3182 Msa1464540:intergenic
GCAAGCTGGAATCAAGGTCT+GGG 0.553213 tig0044340:+6783 Msa1464540:CDS
TGGAATCCAGGAAAAGAAGA+AGG 0.555210 tig0044340:+7057 Msa1464540:CDS
CTGTCATACATCACCGCCAC+CGG 0.555834 tig0044340:+3561 Msa1464540:CDS
CCTTGATTCCAGCTTGCCGT+AGG 0.557151 tig0044340:-6777 Msa1464540:intergenic
ATGGTGATGTAAAGAGATAT+GGG 0.557606 tig0044340:-4970 Msa1464540:intergenic
GTTGTAAAGGTGCTAGTCAA+AGG 0.560676 tig0044340:+6442 Msa1464540:CDS
TCGTGTTGCACCCTTGCAGA+AGG 0.560926 tig0044340:+7359 Msa1464540:CDS
GGTGCTGCTGATGATGCTGA+TGG 0.561018 tig0044340:-3860 Msa1464540:intergenic
AGGTATCAAGCTGGTTCTTG+TGG 0.562318 tig0044340:-4819 Msa1464540:intergenic
GTGTGAGATCTTCATGTAGA+GGG 0.563479 tig0044340:+6950 Msa1464540:CDS
TTCGGAAAGTAGTGGTTGAT+CGG 0.566082 tig0044340:-3522 Msa1464540:intergenic
TCTTTCTGATACCGAACTTG+AGG 0.566853 tig0044340:+6597 Msa1464540:CDS
CAACCACAGGGAAGTTGTGT+TGG 0.567163 tig0044340:+3625 Msa1464540:CDS
ATGACGCTAGCTCTGGATCA+AGG 0.567492 tig0044340:+5046 Msa1464540:CDS
TCCGAAGGGCTAGTGTAGAT+GGG 0.567557 tig0044340:+5166 Msa1464540:CDS
GTTAGCTGTATTTGGGAGGA+CGG 0.569338 tig0044340:+4135 Msa1464540:CDS
AATCCACCATCGTTAAGTAT+GGG 0.569446 tig0044340:-6003 Msa1464540:intergenic
ATGTTGGTGTTGGAATATGT+GGG 0.569500 tig0044340:+7616 Msa1464540:CDS
GGCGTCCCTGTTCCCGCGTG+GGG 0.569860 tig0044340:-3772 Msa1464540:intergenic
AACACTTACAGAAAACAAGA+TGG 0.570717 tig0044340:+5140 Msa1464540:CDS
ATATGAATAGAGAAACACTT+TGG 0.571600 tig0044340:+4731 Msa1464540:CDS
TGTTATAAACGGCACTTCAG+AGG 0.573932 tig0044340:+6885 Msa1464540:CDS
CAAATGGCAGATGTTGGTGT+TGG 0.574373 tig0044340:+7606 Msa1464540:CDS
TCTCACACCATATTTGGCTA+TGG 0.576308 tig0044340:-6935 Msa1464540:intergenic
CAACACAACTTCCCTGTGGT+TGG 0.576550 tig0044340:-3624 Msa1464540:intergenic
CAAGCAGGAAACGGCTTCTG+TGG 0.577649 tig0044340:+4456 Msa1464540:CDS
CTTGATTCCAGCTTGCCGTA+GGG 0.578115 tig0044340:-6776 Msa1464540:intergenic
GAATGCCCCACGCGGGAACA+GGG 0.578640 tig0044340:+3767 Msa1464540:CDS
TTGTGTGAATATTCTTCACA+AGG 0.580115 tig0044340:+6544 Msa1464540:CDS
ATCCTACGCGATGAAGGTGT+TGG 0.580453 tig0044340:-3881 Msa1464540:intergenic
ACCAAAAGAACAAACAAAAG+CGG 0.580703 tig0044340:-4169 Msa1464540:intergenic
GACTTCTAGAGGCAACTACA+AGG 0.580933 tig0044340:-6576 Msa1464540:intergenic
AACAATTCCAGCCTTCTGCA+AGG 0.581790 tig0044340:-7370 Msa1464540:intergenic
AACGGCTTCTGTGGTATCGT+CGG 0.583715 tig0044340:+4465 Msa1464540:CDS
AGAAGGAACTGATACTCCAT+TGG 0.585379 tig0044340:+7074 Msa1464540:CDS
AAACTAGAGCTTGTTCATCA+GGG 0.586600 tig0044340:-6089 Msa1464540:intergenic
ATGATAAGTATGAGTTTACT+GGG 0.587693 tig0044340:+3990 Msa1464540:CDS
TCCAAGAGAAGCAGACTGGA+AGG 0.589185 tig0044340:+4706 Msa1464540:CDS
ATTCCCATACTTAACGATGG+TGG 0.591610 tig0044340:+6000 Msa1464540:CDS
AACCTGAAAGATTGAGAATG+TGG 0.591996 tig0044340:-3205 Msa1464540:intergenic
CCATGGAGTTGGTTAGATTG+GGG 0.592225 tig0044340:+4989 Msa1464540:CDS
ATGTTATTCGTAAACAGAGA+TGG 0.592729 tig0044340:+5854 Msa1464540:CDS
GGAGAAGGAACTGGAGTCAG+AGG 0.593774 tig0044340:+7134 Msa1464540:CDS
AAAACAAGATGGAATTCCGA+AGG 0.593794 tig0044340:+5151 Msa1464540:CDS
AGATTGGATAATTGGTGTTG+TGG 0.596400 tig0044340:+4633 Msa1464540:CDS
ACAATTCCAGCCTTCTGCAA+GGG 0.596423 tig0044340:-7369 Msa1464540:intergenic
AACTAGAGCTTGTTCATCAG+GGG 0.598493 tig0044340:-6088 Msa1464540:intergenic
TGGTGTTGGAATATGTGGGT+TGG 0.599247 tig0044340:+7620 Msa1464540:CDS
CAGAAGCCATTGAGTCCCTA+CGG 0.599338 tig0044340:+6761 Msa1464540:CDS
GTCCTCCCAAATACAGCTAA+CGG 0.603292 tig0044340:-4133 Msa1464540:intergenic
CATATCTCTTTACATCACCA+TGG 0.604870 tig0044340:+4972 Msa1464540:CDS
GATTAAGTGCAGCAATAGCA+AGG 0.606891 tig0044340:-4102 Msa1464540:intergenic
GATGATATGACACTGGCCAT+AGG 0.609637 tig0044340:+7414 Msa1464540:CDS
ACTATTATCAGCAGTAAGCA+AGG 0.611124 tig0044340:-5205 Msa1464540:intergenic
TCTTCAGTTGGCAACCTCGT+AGG 0.613713 tig0044340:-4606 Msa1464540:intergenic
AATAAAACCAATGCTGAACA+TGG 0.614089 tig0044340:+6988 Msa1464540:CDS
CAGGCGTCCCTGTTCCCGCG+TGG 0.614636 tig0044340:-3774 Msa1464540:intergenic
GGTATCAGAAAGACTTCTAG+AGG 0.615198 tig0044340:-6587 Msa1464540:intergenic
GGTGTGAGATCTTCATGTAG+AGG 0.616354 tig0044340:+6949 Msa1464540:CDS
TAAGTACTATGGGATACCAA+TGG 0.616652 tig0044340:+4897 Msa1464540:CDS
GTAGAGGGAATCAGAATCTG+AGG 0.619328 tig0044340:+6965 Msa1464540:CDS
TCCTCCAACCTCCAACCACA+GGG 0.619426 tig0044340:+3613 Msa1464540:CDS
CTGCTGATATGGTCTTGTTG+GGG 0.620803 tig0044340:+4356 Msa1464540:CDS
CCCCAATCTAACCAACTCCA+TGG 0.621634 tig0044340:-4989 Msa1464540:intergenic
GGAGGTTGGAGGAGATTCGA+CGG 0.621827 tig0044340:-3603 Msa1464540:intergenic
TGTAACAGAAGCTGATGCAG+TGG 0.624089 tig0044340:-3711 Msa1464540:intergenic
ATGACACTGGCCATAGGTGA+CGG 0.624501 tig0044340:+7420 Msa1464540:CDS
ATGGATACACTCTGTTTGAG+CGG 0.624927 tig0044340:+6127 Msa1464540:CDS
TGGCCAACACAACTTCCCTG+TGG 0.625794 tig0044340:-3628 Msa1464540:intergenic
ATGATCCAAATGGCAGATGT+TGG 0.629245 tig0044340:+7600 Msa1464540:CDS
TGGGGACGAGTGATCCAAGT+GGG 0.630692 tig0044340:+4374 Msa1464540:CDS
TATAAACGGCACTTCAGAGG+AGG 0.631333 tig0044340:+6888 Msa1464540:CDS
AGAAGCCGCACTGTTCAGCA+TGG 0.633457 tig0044340:-4680 Msa1464540:intergenic
GCTGTGTTGTGTTGAGAGAG+AGG 0.635553 tig0044340:-3151 Msa1464540:intergenic
AATTGAGGACAAGCTGCAAG+AGG 0.636585 tig0044340:+6732 Msa1464540:CDS
AGTAAGGCAAGGTATCAAGC+TGG 0.643691 tig0044340:-4828 Msa1464540:intergenic
GTGGCAAAGCAGGTATGGAG+AGG 0.646898 tig0044340:+6621 Msa1464540:CDS
ATTGAGGACAAGCTGCAAGA+GGG 0.648118 tig0044340:+6733 Msa1464540:CDS
CTGATACCGAACTTGAGGAG+TGG 0.649328 tig0044340:+6602 Msa1464540:CDS
TGTTGTTGTTAACTGCTGAG+TGG 0.658769 tig0044340:-3664 Msa1464540:intergenic
GGATTGGAGGAGACATAGGT+CGG 0.659350 tig0044340:+4216 Msa1464540:CDS
CCGCACAGATGATATGACAC+TGG 0.665332 tig0044340:+7407 Msa1464540:CDS
AAACAAGATGGAATTCCGAA+GGG 0.665509 tig0044340:+5152 Msa1464540:CDS
AGATCTGGTTCGGAAAGTAG+TGG 0.667327 tig0044340:-3530 Msa1464540:intergenic
GTGATTCCCATACTTAACGA+TGG 0.667355 tig0044340:+5997 Msa1464540:CDS
GTCAGGAAACCGAATAACAA+CGG 0.672845 tig0044340:-6416 Msa1464540:intergenic
CAACCTTACAGGAAATTGCA+AGG 0.674452 tig0044340:-7326 Msa1464540:intergenic
TTCCTTTGGAATGCCCCACG+CGG 0.674593 tig0044340:+3759 Msa1464540:CDS
CACCAACACCTTCATCGCGT+AGG 0.678521 tig0044340:+3879 Msa1464540:CDS
CCGGAGATCCGGATCCCGTG+AGG 0.679280 tig0044340:+3580 Msa1464540:CDS
GCAGAATGCATTGATTACCA+GGG 0.679678 tig0044340:+6060 Msa1464540:CDS
ACTTCTAGAGGCAACTACAA+GGG 0.680280 tig0044340:-6575 Msa1464540:intergenic
TTGGGGACGAGTGATCCAAG+TGG 0.681968 tig0044340:+4373 Msa1464540:CDS
CAGAGTGTATCCATATGCAG+AGG 0.682522 tig0044340:-6118 Msa1464540:intergenic
GAGAGTCGAATTTGAAGACG+AGG 0.686154 tig0044340:+4428 Msa1464540:CDS
TGGCGGTGATGTATGACAGG+AGG 0.689896 tig0044340:-3557 Msa1464540:intergenic
CAGCCAAAGACACATCCCAA+TGG 0.703192 tig0044340:-4791 Msa1464540:intergenic
AAAAGCCATGCTGAACAGTG+CGG 0.705650 tig0044340:+4675 Msa1464540:CDS
CAGTCAAACATTGTCCTACG+AGG 0.705705 tig0044340:+4592 Msa1464540:CDS
CTCCCAAATACAGCTAACGG+AGG 0.707211 tig0044340:-4130 Msa1464530:intergenic
CCAGTGTCATATCATCTGTG+CGG 0.716741 tig0044340:-7407 Msa1464530:intergenic
GTTGTGTTGAGAGAGAGGAA+CGG 0.791731 tig0044340:-3146 Msa1464530:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATATAAATGAAGATT+TGG + tig0044340:5083-5102 Msa1464540:CDS 10.0%
!! TTAAATATAAATGAAGATTT+GGG + tig0044340:5084-5103 Msa1464540:CDS 10.0%
!! TTTAAACAAAATATAAAAGT+GGG - tig0044340:6226-6245 Msa1464540:intergenic 10.0%
!! ATTTAAACAAAATATAAAAG+TGG - tig0044340:6227-6246 Msa1464540:intergenic 10.0%
!! AAAAATCAAATATGAATTAA+GGG - tig0044340:7473-7492 Msa1464540:intergenic 10.0%
!! ATGAATAGATATAAAATTTG+AGG - tig0044340:3272-3291 Msa1464540:intergenic 15.0%
!! AACTGAATAAATAAATTCTT+TGG - tig0044340:4058-4077 Msa1464540:intergenic 15.0%
!! ATTTATTTATTCAGTTTCAT+AGG + tig0044340:4062-4081 Msa1464540:CDS 15.0%
!! TTTATTTATTCAGTTTCATA+GGG + tig0044340:4063-4082 Msa1464540:CDS 15.0%
!! ACTGAAATTCTTAATATTTA+GGG + tig0044340:5344-5363 Msa1464540:intron 15.0%
!! GAAAAATCAAATATGAATTA+AGG - tig0044340:7474-7493 Msa1464540:intergenic 15.0%
!!! AATTCATATTTGATTTTTCT+TGG + tig0044340:7475-7494 Msa1464540:intron 15.0%
!!! TACTTATCATTAGTTTTCTT+AGG - tig0044340:3980-3999 Msa1464540:intergenic 20.0%
!! TTATATTTCTTTCCTTTATC+CGG - tig0044340:4880-4899 Msa1464540:intergenic 20.0%
!! GAAAGAAATATAAGTACTAT+GGG + tig0044340:4887-4906 Msa1464540:CDS 20.0%
!! TTACATATAATTATCTCAAG+GGG - tig0044340:5246-5265 Msa1464540:intergenic 20.0%
!! GTTACATATAATTATCTCAA+GGG - tig0044340:5247-5266 Msa1464540:intergenic 20.0%
!! AGTTACATATAATTATCTCA+AGG - tig0044340:5248-5267 Msa1464540:intergenic 20.0%
!! CACTGAAATTCTTAATATTT+AGG + tig0044340:5343-5362 Msa1464540:intron 20.0%
!!! ATATTTTGTTTAAATGATGC+TGG + tig0044340:6232-6251 Msa1464540:intron 20.0%
!!! GAATAGTTTGGTTTATATTT+TGG + tig0044340:7113-7132 Msa1464540:CDS 20.0%
!! CCAAAAAAATAAATCTAACA+GGG - tig0044340:7173-7192 Msa1464540:intergenic 20.0%
!! TCCAAAAAAATAAATCTAAC+AGG - tig0044340:7174-7193 Msa1464540:intergenic 20.0%
! ATTATTACAACCATACATCA+GGG + tig0044340:3309-3328 Msa1464540:intron 25.0%
!!! AATTTTTTAACCCTGATGTA+TGG - tig0044340:3322-3341 Msa1464540:intergenic 25.0%
! ATAATTCTCCATTCACATTA+TGG - tig0044340:3493-3512 Msa1464540:intergenic 25.0%
! AATGATAAGTATGAGTTTAC+TGG + tig0044340:3989-4008 Msa1464540:CDS 25.0%
! ATGATAAGTATGAGTTTACT+GGG + tig0044340:3990-4009 Msa1464540:CDS 25.0%
! CAAATTCATTGTCTGAATAT+AGG - tig0044340:4404-4423 Msa1464540:intergenic 25.0%
! CTATATTCAGACAATGAATT+TGG + tig0044340:4402-4421 Msa1464540:CDS 25.0%
! ATATGAATAGAGAAACACTT+TGG + tig0044340:4731-4750 Msa1464540:CDS 25.0%
!! TTTTCTTTGTATCATGTGTT+TGG + tig0044340:4762-4781 Msa1464540:CDS 25.0%
! AGAAAAACATACCTTAACAA+TGG + tig0044340:4853-4872 Msa1464540:CDS 25.0%
! TATATTTCTTTCCTTTATCC+GGG - tig0044340:4879-4898 Msa1464540:intergenic 25.0%
! GGAAAGAAATATAAGTACTA+TGG + tig0044340:4886-4905 Msa1464540:CDS 25.0%
!! TATATATTTTCAGACAAGAC+AGG + tig0044340:5117-5136 Msa1464540:CDS 25.0%
!!! GTTATGCTTTTAGAATTCTT+CGG + tig0044340:5421-5440 Msa1464540:intron 25.0%
!!! TTTTAGAATTCTTCGGTATA+TGG + tig0044340:5428-5447 Msa1464540:intron 25.0%
!! TTAAAGAGCACATTCTATAT+TGG - tig0044340:5493-5512 Msa1464540:intergenic 25.0%
! TCATACAATAACTATACATC+GGG - tig0044340:5602-5621 Msa1464540:intergenic 25.0%
! CTCATACAATAACTATACAT+CGG - tig0044340:5603-5622 Msa1464540:intergenic 25.0%
! AGAAAAGCTAAATTGTACAA+AGG - tig0044340:5662-5681 Msa1464540:intergenic 25.0%
! ATTCATTATTCACTTACAGA+TGG - tig0044340:5781-5800 Msa1464540:intergenic 25.0%
!!! TCATGAGTTTTTTCTTACAT+TGG + tig0044340:5960-5979 Msa1464540:CDS 25.0%
!! CATATTGTTATTGACATCAA+TGG + tig0044340:6159-6178 Msa1464540:CDS 25.0%
! AGTTACTGAGTAATCTAAAT+AGG - tig0044340:6324-6343 Msa1464540:intergenic 25.0%
!! TACATCAATGTTTAGCATTT+TGG + tig0044340:6471-6490 Msa1464540:CDS 25.0%
! GAATGCAATTTAAATCTACT+TGG + tig0044340:6700-6719 Msa1464540:CDS 25.0%
! ATGCAGCAAATTGTTATAAA+CGG + tig0044340:6874-6893 Msa1464540:CDS 25.0%
!!! TTTGGTTTATATTTTGGAGA+AGG + tig0044340:7119-7138 Msa1464540:CDS 25.0%
! AAAAATAAATCTAACAGGGA+AGG - tig0044340:7169-7188 Msa1464540:intergenic 25.0%
!!! CCCTGTTAGATTTATTTTTT+TGG + tig0044340:7170-7189 Msa1464540:intron 25.0%
! AGCTGTTAAATAAGACTTAA+CGG + tig0044340:7260-7279 Msa1464540:intron 25.0%
!!! TCATATTTGATTTTTCTTGG+AGG + tig0044340:7478-7497 Msa1464540:intron 25.0%
! GTGACTAATAATATTCCAAT+AGG + tig0044340:7513-7532 Msa1464540:intron 25.0%
! AAGAAAATGATTAAGCTTCA+TGG - tig0044340:7545-7564 Msa1464540:intergenic 25.0%
!! TGAAGCTTAATCATTTTCTT+TGG + tig0044340:7545-7564 Msa1464540:intron 25.0%
!! GAAGCTTAATCATTTTCTTT+GGG + tig0044340:7546-7565 Msa1464540:intron 25.0%
! AAAAGATTACTTCTTGTTCA+TGG + tig0044340:7699-7718 Msa1464540:CDS 25.0%
! AAAGATTACTTCTTGTTCAT+GGG + tig0044340:7700-7719 Msa1464540:CDS 25.0%
TCTTTCTTCTTCCTTTCTAA+AGG - tig0044340:3058-3077 None:intergenic 30.0%
AAAAAAGCAACGTAACGAAA+AGG + tig0044340:3102-3121 Msa1464540:five_prime_UTR 30.0%
CATTATTACAACCATACATC+AGG + tig0044340:3308-3327 Msa1464540:intron 30.0%
AAATGATGAAATCGAAGGAA+AGG - tig0044340:3395-3414 Msa1464540:intergenic 30.0%
! CTTCGATTTCATCATTTTCA+GGG + tig0044340:3398-3417 Msa1464540:intron 30.0%
GGAGTTGTTGAAATTTCAAA+GGG - tig0044340:3842-3861 Msa1464540:intergenic 30.0%
TGGAGTTGTTGAAATTTCAA+AGG - tig0044340:3843-3862 Msa1464540:intergenic 30.0%
AACAAACAAAAGCGGAAAAA+GGG - tig0044340:4164-4183 Msa1464540:intergenic 30.0%
ACCAAAAGAACAAACAAAAG+CGG - tig0044340:4172-4191 Msa1464540:intergenic 30.0%
!! TCTTTTGGTTACTGCTATTA+AGG + tig0044340:4183-4202 Msa1464540:CDS 30.0%
ATTCAGACAATGAATTTGGA+TGG + tig0044340:4406-4425 Msa1464540:CDS 30.0%
AACTCATAAATATTCCGGTT+CGG - tig0044340:4529-4548 Msa1464540:intergenic 30.0%
CTGTGAACTCATAAATATTC+CGG - tig0044340:4534-4553 Msa1464540:intergenic 30.0%
AATTCCATTGAACTCCATAT+TGG - tig0044340:4557-4576 Msa1464540:intergenic 30.0%
AAGAACACAGATTGGATAAT+TGG + tig0044340:4625-4644 Msa1464540:CDS 30.0%
! AGGTATGTTTTTCTGTAGTA+AGG - tig0044340:4847-4866 Msa1464540:intergenic 30.0%
! ATGGTGATGTAAAGAGATAT+GGG - tig0044340:4973-4992 Msa1464540:intergenic 30.0%
ATACTTCATGATTGAAGACT+TGG + tig0044340:5017-5036 Msa1464540:CDS 30.0%
AACACTTACAGAAAACAAGA+TGG + tig0044340:5140-5159 Msa1464540:CDS 30.0%
CTGATAATAGTTCAGGTATT+TGG + tig0044340:5217-5236 Msa1464540:intron 30.0%
AATTCTTCGGTATATGGAAA+TGG + tig0044340:5434-5453 Msa1464540:intron 30.0%
ATGTTATTCGTAAACAGAGA+TGG + tig0044340:5854-5873 Msa1464540:CDS 30.0%
! TGCAACATGTTCATTAGTTT+GGG - tig0044340:5907-5926 Msa1464540:intergenic 30.0%
ATGCAACATGTTCATTAGTT+TGG - tig0044340:5908-5927 Msa1464540:intergenic 30.0%
CAGTAACTTTATTATGTCTG+TGG + tig0044340:6336-6355 Msa1464540:intron 30.0%
TATGTCTGTGGTATATAGAT+TGG + tig0044340:6348-6367 Msa1464540:intron 30.0%
GTATATAGATTGGACGTATT+GGG + tig0044340:6358-6377 Msa1464540:intron 30.0%
!! ATGTTTAGCATTTTGGCAAA+TGG + tig0044340:6478-6497 Msa1464540:CDS 30.0%
TTGTGTGAATATTCTTCACA+AGG + tig0044340:6544-6563 Msa1464540:CDS 30.0%
! GAGGAATGTAGAAATCTTTT+GGG + tig0044340:6907-6926 Msa1464540:CDS 30.0%
AATAAAACCAATGCTGAACA+TGG + tig0044340:6988-7007 Msa1464540:CDS 30.0%
CATAATTGATGGGAATAGTT+TGG + tig0044340:7101-7120 Msa1464540:CDS 30.0%
!! TTATATTTTGGAGAAGGAAC+TGG + tig0044340:7125-7144 Msa1464540:CDS 30.0%
!!! AAAGTTTTAGACGTCGAATA+AGG - tig0044340:7205-7224 Msa1464540:intergenic 30.0%
AAAAGCTGTTGAACAGAAAA+AGG - tig0044340:7303-7322 Msa1464540:intergenic 30.0%
ACGAAAAGGATTGGATTGAT+TGG + tig0044340:3116-3135 Msa1464540:five_prime_UTR 35.0%
AAAAGGATTGGATTGATTGG+TGG + tig0044340:3119-3138 Msa1464540:five_prime_UTR 35.0%
AACCTGAAAGATTGAGAATG+TGG - tig0044340:3208-3227 Msa1464540:intergenic 35.0%
! TTGAAATGAAAAGCGCATCA+AGG - tig0044340:3363-3382 Msa1464540:intergenic 35.0%
CCTGAAAATGATGAAATCGA+AGG - tig0044340:3400-3419 Msa1464540:intergenic 35.0%
! CCTTCGATTTCATCATTTTC+AGG + tig0044340:3397-3416 Msa1464540:intron 35.0%
CACTGTCTTCATGTAAAATC+TGG - tig0044340:3934-3953 Msa1464540:intergenic 35.0%
! TTTTACATGAAGACAGTGCT+AGG + tig0044340:3936-3955 Msa1464540:CDS 35.0%
AGTTTACTGGGAATGAGATT+CGG + tig0044340:4002-4021 Msa1464540:CDS 35.0%
GAACAAACAAAAGCGGAAAA+AGG - tig0044340:4165-4184 Msa1464540:intergenic 35.0%
!! TCCGCTTTTGTTTGTTCTTT+TGG + tig0044340:4168-4187 Msa1464540:CDS 35.0%
TTGGTTACTGCTATTAAGGA+TGG + tig0044340:4187-4206 Msa1464540:CDS 35.0%
TGCTATTAAGGATGGATATG+AGG + tig0044340:4195-4214 Msa1464540:CDS 35.0%
TTAAGGATGGATATGAGGAT+TGG + tig0044340:4200-4219 Msa1464540:CDS 35.0%
! TTCTTCAGTCTGGTGATTTT+CGG + tig0044340:4269-4288 Msa1464540:CDS 35.0%
GAAGGTTTGGAAAAAGATTG+AGG + tig0044340:4294-4313 Msa1464540:CDS 35.0%
TTATGAGTTCACAGCCAATA+TGG + tig0044340:4540-4559 Msa1464540:CDS 35.0%
!! AGATTGGATAATTGGTGTTG+TGG + tig0044340:4633-4652 Msa1464540:CDS 35.0%
TTGTATCATGTGTTTGGTTG+TGG + tig0044340:4768-4787 Msa1464540:CDS 35.0%
! TGTTTTTCTGTAGTAAGGCA+AGG - tig0044340:4842-4861 Msa1464540:intergenic 35.0%
TAAGTACTATGGGATACCAA+TGG + tig0044340:4897-4916 Msa1464540:CDS 35.0%
CACTATCACAGAACTCAAAA+AGG - tig0044340:4935-4954 Msa1464540:intergenic 35.0%
! CATGGTGATGTAAAGAGATA+TGG - tig0044340:4974-4993 Msa1464540:intergenic 35.0%
CATATCTCTTTACATCACCA+TGG + tig0044340:4972-4991 Msa1464540:CDS 35.0%
AAAACAAGATGGAATTCCGA+AGG + tig0044340:5151-5170 Msa1464540:CDS 35.0%
AAACAAGATGGAATTCCGAA+GGG + tig0044340:5152-5171 Msa1464540:CDS 35.0%
AGTGTAGATGGGAAGAATTA+CGG + tig0044340:5177-5196 Msa1464540:CDS 35.0%
ACTATTATCAGCAGTAAGCA+AGG - tig0044340:5208-5227 Msa1464540:intergenic 35.0%
CTTACTGCTGATAATAGTTC+AGG + tig0044340:5210-5229 Msa1464540:CDS 35.0%
!! AAATGGTTAGTTTGCTTGAC+AGG + tig0044340:5451-5470 Msa1464540:intron 35.0%
AACCACTTCTAATTGATCCT+GGG + tig0044340:5537-5556 Msa1464540:intron 35.0%
! TCGGGCTTTATATATTCACA+CGG - tig0044340:5584-5603 Msa1464540:intergenic 35.0%
TATGGGAATCACAGTATTAC+AGG - tig0044340:5989-6008 Msa1464540:intergenic 35.0%
AATCCACCATCGTTAAGTAT+GGG - tig0044340:6006-6025 Msa1464540:intergenic 35.0%
AAATCCACCATCGTTAAGTA+TGG - tig0044340:6007-6026 Msa1464540:intergenic 35.0%
! AAACTAGAGCTTGTTCATCA+GGG - tig0044340:6092-6111 Msa1464540:intergenic 35.0%
!! ATTGTGACTTCCTTTGAGAT+GGG + tig0044340:6198-6217 Msa1464540:intron 35.0%
GGTATATAGATTGGACGTAT+TGG + tig0044340:6357-6376 Msa1464540:intron 35.0%
! AGAGAATGTCCGTTGTTATT+CGG + tig0044340:6407-6426 Msa1464540:CDS 35.0%
GTTTCCTGACAATGTTGTAA+AGG + tig0044340:6429-6448 Msa1464540:CDS 35.0%
TTAAATCTACTTGGAGCAAC+TGG + tig0044340:6709-6728 Msa1464540:CDS 35.0%
! GGAGGAATGTAGAAATCTTT+TGG + tig0044340:6906-6925 Msa1464540:CDS 35.0%
TGAAGATCTCACACCATATT+TGG - tig0044340:6944-6963 Msa1464540:intergenic 35.0%
GGTGATCTTGATATTTCCAA+TGG + tig0044340:7009-7028 Msa1464540:CDS 35.0%
!! ACTCATTGACTTTGAACCAT+TGG - tig0044340:7028-7047 Msa1464540:intergenic 35.0%
! TCTTTTCCTGGATTCCATTT+GGG - tig0044340:7054-7073 Msa1464540:intergenic 35.0%
! TTCTTTTCCTGGATTCCATT+TGG - tig0044340:7055-7074 Msa1464540:intergenic 35.0%
!! CGTCTAAAACTTTCCTTTTC+TGG + tig0044340:7212-7231 Msa1464540:intron 35.0%
AGTAGTACATTCACCAGAAA+AGG - tig0044340:7228-7247 Msa1464540:intergenic 35.0%
! TTGATTTTTCTTGGAGGTTC+TGG + tig0044340:7484-7503 Msa1464540:intron 35.0%
!! TCTTTGGGAATACTTTTGAC+AGG + tig0044340:7561-7580 Msa1464540:intron 35.0%
!! CTTTGGGAATACTTTTGACA+GGG + tig0044340:7562-7581 Msa1464540:intron 35.0%
! TTTGGGAATACTTTTGACAG+GGG + tig0044340:7563-7582 Msa1464540:intron 35.0%
!! ATGTTGGTGTTGGAATATGT+GGG + tig0044340:7616-7635 Msa1464540:CDS 35.0%
!! ATGGCATCAGATTTTGCTAT+GGG + tig0044340:7660-7679 Msa1464540:CDS 35.0%
! AAGAGAGAGAAGTGTGAAGA+AGG + tig0044340:3077-3096 Msa1464540:five_prime_UTR 40.0%
AGCAACGTAACGAAAAGGAT+TGG + tig0044340:3107-3126 Msa1464540:five_prime_UTR 40.0%
CTCCACATTCTCAATCTTTC+AGG + tig0044340:3203-3222 Msa1464540:five_prime_UTR 40.0%
CGCGTTTGCGAATATATTCA+CGG - tig0044340:3465-3484 Msa1464540:intergenic 40.0%
GCGATTCTCCATAATGTGAA+TGG + tig0044340:3482-3501 Msa1464540:five_prime_UTR 40.0%
TTCGGAAAGTAGTGGTTGAT+CGG - tig0044340:3525-3544 Msa1464540:intergenic 40.0%
! TGTTGTTGTTAACTGCTGAG+TGG - tig0044340:3667-3686 Msa1464540:intergenic 40.0%
GATTAAGTGCAGCAATAGCA+AGG - tig0044340:4105-4124 Msa1464540:intergenic 40.0%
TTCCTCCGTTAGCTGTATTT+GGG + tig0044340:4128-4147 Msa1464540:CDS 40.0%
TGAGAATAATCGCGAGTCTT+TGG + tig0044340:4246-4265 Msa1464540:CDS 40.0%
GTTTGGAAAAAGATTGAGGC+TGG + tig0044340:4298-4317 Msa1464540:CDS 40.0%
TCGGAAGTTTGTGATGTTTC+TGG + tig0044340:4484-4503 Msa1464540:CDS 40.0%
CGGAAGTTTGTGATGTTTCT+GGG + tig0044340:4485-4504 Msa1464540:CDS 40.0%
ACAGCCAATATGGAGTTCAA+TGG + tig0044340:4550-4569 Msa1464540:CDS 40.0%
TCCAATCTGTGTTCTTCAGT+TGG - tig0044340:4621-4640 Msa1464540:intergenic 40.0%
!! ATTGGTGTTGTGGTTTATGC+TGG + tig0044340:4643-4662 Msa1464540:CDS 40.0%
AACATACCTTAACAATGGCC+CGG + tig0044340:4858-4877 Msa1464540:CDS 40.0%
AAGGAGAAAAACGCTTCCAT+TGG - tig0044340:4916-4935 Msa1464540:intergenic 40.0%
TCTTTACATCACCATGGAGT+TGG + tig0044340:4978-4997 Msa1464540:CDS 40.0%
! ACCATGGAGTTGGTTAGATT+GGG + tig0044340:4988-5007 Msa1464540:CDS 40.0%
GTGTAGATGGGAAGAATTAC+GGG + tig0044340:5178-5197 Msa1464540:CDS 40.0%
GAACCACTTCTAATTGATCC+TGG + tig0044340:5536-5555 Msa1464540:intron 40.0%
ACCACTTCTAATTGATCCTG+GGG + tig0044340:5538-5557 Msa1464540:intron 40.0%
CACACGGTATTATCACTAGT+AGG - tig0044340:5568-5587 Msa1464540:intergenic 40.0%
GTGATTCCCATACTTAACGA+TGG + tig0044340:5997-6016 Msa1464540:CDS 40.0%
ATTCCCATACTTAACGATGG+TGG + tig0044340:6000-6019 Msa1464540:CDS 40.0%
!!! CTTAACGATGGTGGATTTTC+TGG + tig0044340:6009-6028 Msa1464540:CDS 40.0%
!! TGCAGAATGCATTGATTACC+AGG + tig0044340:6059-6078 Msa1464540:CDS 40.0%
!! GCAGAATGCATTGATTACCA+GGG + tig0044340:6060-6079 Msa1464540:CDS 40.0%
! AACTAGAGCTTGTTCATCAG+GGG - tig0044340:6091-6110 Msa1464540:intergenic 40.0%
! GAAACTAGAGCTTGTTCATC+AGG - tig0044340:6093-6112 Msa1464540:intergenic 40.0%
ATGGATACACTCTGTTTGAG+CGG + tig0044340:6127-6146 Msa1464540:CDS 40.0%
ACATCAATGGTGAGAAACTC+AGG + tig0044340:6172-6191 Msa1464540:CDS 40.0%
! GATTGTGACTTCCTTTGAGA+TGG + tig0044340:6197-6216 Msa1464540:intron 40.0%
GTCAGGAAACCGAATAACAA+CGG - tig0044340:6419-6438 Msa1464540:intergenic 40.0%
AGCACCTTTACAACATTGTC+AGG - tig0044340:6436-6455 Msa1464540:intergenic 40.0%
!! GTTGTAAAGGTGCTAGTCAA+AGG + tig0044340:6442-6461 Msa1464540:CDS 40.0%
! ACTTCTAGAGGCAACTACAA+GGG - tig0044340:6578-6597 Msa1464540:intergenic 40.0%
GGTATCAGAAAGACTTCTAG+AGG - tig0044340:6590-6609 Msa1464540:intergenic 40.0%
TCTTTCTGATACCGAACTTG+AGG + tig0044340:6597-6616 Msa1464540:CDS 40.0%
! TGCTGTTTGACGTAGTTTAC+TGG - tig0044340:6671-6690 Msa1464540:intergenic 40.0%
! TGCTGTCTCTTGTTTATCAC+CGG - tig0044340:6815-6834 Msa1464540:intergenic 40.0%
CAAGAGACAGCAATCTCAAT+TGG + tig0044340:6823-6842 Msa1464540:CDS 40.0%
ATCTGAACTGAGAAGTTTGC+AGG - tig0044340:6854-6873 Msa1464540:intergenic 40.0%
TGTTATAAACGGCACTTCAG+AGG + tig0044340:6885-6904 Msa1464540:CDS 40.0%
TCTCACACCATATTTGGCTA+TGG - tig0044340:6938-6957 Msa1464540:intergenic 40.0%
GTGTGAGATCTTCATGTAGA+GGG + tig0044340:6950-6969 Msa1464540:CDS 40.0%
AAGATCACCATGTTCAGCAT+TGG - tig0044340:6998-7017 Msa1464540:intergenic 40.0%
AGTCAATGAGTTTGCCCAAA+TGG + tig0044340:7037-7056 Msa1464540:CDS 40.0%
TGGAATCCAGGAAAAGAAGA+AGG + tig0044340:7057-7076 Msa1464540:CDS 40.0%
! TCAGTTCCTTCTTCTTTTCC+TGG - tig0044340:7066-7085 Msa1464540:intergenic 40.0%
AGAAGGAACTGATACTCCAT+TGG + tig0044340:7074-7093 Msa1464540:CDS 40.0%
CATTGGCGCTCATAATTGAT+GGG + tig0044340:7091-7110 Msa1464540:CDS 40.0%
TGACCTTGCAATTTCCTGTA+AGG + tig0044340:7323-7342 Msa1464540:CDS 40.0%
CAACCTTACAGGAAATTGCA+AGG - tig0044340:7329-7348 Msa1464540:intergenic 40.0%
AAAGAACTTACCGTCACCTA+TGG - tig0044340:7433-7452 Msa1464540:intergenic 40.0%
TTGGATCATTGACACGTCAT+TGG - tig0044340:7589-7608 Msa1464540:intergenic 40.0%
TGACGTGTCAATGATCCAAA+TGG + tig0044340:7590-7609 Msa1464540:CDS 40.0%
ATGATCCAAATGGCAGATGT+TGG + tig0044340:7600-7619 Msa1464540:CDS 40.0%
!! GATGTTGGTGTTGGAATATG+TGG + tig0044340:7615-7634 Msa1464540:CDS 40.0%
!! TTGGAATATGTGGGTTGGAA+GGG + tig0044340:7625-7644 Msa1464540:CDS 40.0%
! GATGGCATCAGATTTTGCTA+TGG + tig0044340:7659-7678 Msa1464540:CDS 40.0%
GTTGTGTTGAGAGAGAGGAA+CGG - tig0044340:3149-3168 Msa1464540:intergenic 45.0%
AAGAGGAGAGAGAAGGAATC+AGG - tig0044340:3178-3197 Msa1464540:intergenic 45.0%
AGAGAGAAAGAGGAGAGAGA+AGG - tig0044340:3185-3204 Msa1464540:intergenic 45.0%
GAGAATGTGGAGAGAGAAAG+AGG - tig0044340:3195-3214 Msa1464540:intergenic 45.0%
!! AGATCTGGTTCGGAAAGTAG+TGG - tig0044340:3533-3552 Msa1464540:intergenic 45.0%
AGGAGGAACAAGATCTGGTT+CGG - tig0044340:3543-3562 Msa1464540:intergenic 45.0%
ATGACAGGAGGAACAAGATC+TGG - tig0044340:3548-3567 Msa1464540:intergenic 45.0%
TGAGTGGAAGCTGCAATCTT+TGG - tig0044340:3651-3670 Msa1464540:intergenic 45.0%
TGTAACAGAAGCTGATGCAG+TGG - tig0044340:3714-3733 Msa1464540:intergenic 45.0%
! TCCTGATTCGCAGTTTCCTT+TGG + tig0044340:3745-3764 Msa1464540:CDS 45.0%
TCCAAAGGAAACTGCGAATC+AGG - tig0044340:3749-3768 Msa1464540:intergenic 45.0%
CTTCCTCCGTTAGCTGTATT+TGG + tig0044340:4127-4146 Msa1464540:CDS 45.0%
GTCCTCCCAAATACAGCTAA+CGG - tig0044340:4136-4155 Msa1464540:intergenic 45.0%
GTTAGCTGTATTTGGGAGGA+CGG + tig0044340:4135-4154 Msa1464540:CDS 45.0%
AGGATGGATATGAGGATTGG+AGG + tig0044340:4203-4222 Msa1464540:CDS 45.0%
ATGAGGATTGGAGGAGACAT+AGG + tig0044340:4212-4231 Msa1464540:CDS 45.0%
!! GAGTCTTTGGTTCTTCAGTC+TGG + tig0044340:4259-4278 Msa1464540:CDS 45.0%
! GTGATTTTCGGTCGAAGGTT+TGG + tig0044340:4281-4300 Msa1464540:CDS 45.0%
GAAAAAGATTGAGGCTGGTG+AGG + tig0044340:4303-4322 Msa1464540:CDS 45.0%
TGAGACCATTCCTGCTGATA+TGG + tig0044340:4345-4364 Msa1464540:CDS 45.0%
CAAGACCATATCAGCAGGAA+TGG - tig0044340:4353-4372 Msa1464540:intergenic 45.0%
!! TCCTGCTGATATGGTCTTGT+TGG + tig0044340:4354-4373 Msa1464540:CDS 45.0%
!! CCTGCTGATATGGTCTTGTT+GGG + tig0044340:4355-4374 Msa1464540:CDS 45.0%
!! CTGCTGATATGGTCTTGTTG+GGG + tig0044340:4356-4375 Msa1464540:CDS 45.0%
TGAATATAGGCAAGCCCACT+TGG - tig0044340:4391-4410 Msa1464540:intergenic 45.0%
GAGAGTCGAATTTGAAGACG+AGG + tig0044340:4428-4447 Msa1464540:CDS 45.0%
CTCGTAGGACAATGTTTGAC+TGG - tig0044340:4594-4613 Msa1464540:intergenic 45.0%
CAGTCAAACATTGTCCTACG+AGG + tig0044340:4592-4611 Msa1464540:CDS 45.0%
GCCAACTGAAGAACACAGAT+TGG + tig0044340:4617-4636 Msa1464540:CDS 45.0%
TGTTGTGGTTTATGCTGGAC+AGG + tig0044340:4648-4667 Msa1464540:CDS 45.0%
AAAAGCCATGCTGAACAGTG+CGG + tig0044340:4675-4694 Msa1464540:CDS 45.0%
ATGTGTTTGGTTGTGGCCAT+TGG + tig0044340:4775-4794 Msa1464540:CDS 45.0%
TGTGTTTGGTTGTGGCCATT+GGG + tig0044340:4776-4795 Msa1464540:CDS 45.0%
! AGGTATCAAGCTGGTTCTTG+TGG - tig0044340:4822-4841 Msa1464540:intergenic 45.0%
! AGTAAGGCAAGGTATCAAGC+TGG - tig0044340:4831-4850 Msa1464540:intergenic 45.0%
CTTTATCCGGGCCATTGTTA+AGG - tig0044340:4867-4886 Msa1464540:intergenic 45.0%
CTTAACAATGGCCCGGATAA+AGG + tig0044340:4865-4884 Msa1464540:CDS 45.0%
! CACCATGGAGTTGGTTAGAT+TGG + tig0044340:4987-5006 Msa1464540:CDS 45.0%
! CCATGGAGTTGGTTAGATTG+GGG + tig0044340:4989-5008 Msa1464540:CDS 45.0%
GATATGTATGACGCTAGCTC+TGG + tig0044340:5039-5058 Msa1464540:CDS 45.0%
AGCGAGACAAGACACAACAA+CGG - tig0044340:5299-5318 Msa1464540:intergenic 45.0%
ACCCCAGGATCAATTAGAAG+TGG - tig0044340:5542-5561 Msa1464540:intergenic 45.0%
ACTTCTAATTGATCCTGGGG+TGG + tig0044340:5541-5560 Msa1464540:intron 45.0%
AAGCTTCATGAGTTAGCAGC+TGG + tig0044340:5628-5647 Msa1464540:intron 45.0%
!!! GATGGTGGATTTTCTGGTTG+TGG + tig0044340:6015-6034 Msa1464540:CDS 45.0%
CAGAGTGTATCCATATGCAG+AGG - tig0044340:6121-6140 Msa1464540:intergenic 45.0%
AAAGTGGGAACCCATCTCAA+AGG - tig0044340:6211-6230 Msa1464540:intergenic 45.0%
! GACTTCTAGAGGCAACTACA+AGG - tig0044340:6579-6598 Msa1464540:intergenic 45.0%
ACTTGGAGCAACTGGAATTG+AGG + tig0044340:6717-6736 Msa1464540:CDS 45.0%
AATTGAGGACAAGCTGCAAG+AGG + tig0044340:6732-6751 Msa1464540:CDS 45.0%
ATTGAGGACAAGCTGCAAGA+GGG + tig0044340:6733-6752 Msa1464540:CDS 45.0%
ATCAAGGTCTGGGTTCTTAC+CGG + tig0044340:6793-6812 Msa1464540:CDS 45.0%
TATAAACGGCACTTCAGAGG+AGG + tig0044340:6888-6907 Msa1464540:CDS 45.0%
GGTGTGAGATCTTCATGTAG+AGG + tig0044340:6949-6968 Msa1464540:CDS 45.0%
GTAGAGGGAATCAGAATCTG+AGG + tig0044340:6965-6984 Msa1464540:CDS 45.0%
AGTTTGCCCAAATGGAATCC+AGG + tig0044340:7045-7064 Msa1464540:CDS 45.0%
CCATCAATTATGAGCGCCAA+TGG - tig0044340:7093-7112 Msa1464540:intergenic 45.0%
CCATTGGCGCTCATAATTGA+TGG + tig0044340:7090-7109 Msa1464540:CDS 45.0%
ACAACACAGCACAACCTTAC+AGG - tig0044340:7340-7359 Msa1464540:intergenic 45.0%
ACAATTCCAGCCTTCTGCAA+GGG - tig0044340:7372-7391 Msa1464540:intergenic 45.0%
AACAATTCCAGCCTTCTGCA+AGG - tig0044340:7373-7392 Msa1464540:intergenic 45.0%
CCAGTGTCATATCATCTGTG+CGG - tig0044340:7410-7429 Msa1464540:intergenic 45.0%
GATGATATGACACTGGCCAT+AGG + tig0044340:7414-7433 Msa1464540:CDS 45.0%
! TTCTTGGAGGTTCTGGTTGA+TGG + tig0044340:7491-7510 Msa1464540:intron 45.0%
CAACACCAACATCTGCCATT+TGG - tig0044340:7608-7627 Msa1464540:intergenic 45.0%
CAAATGGCAGATGTTGGTGT+TGG + tig0044340:7606-7625 Msa1464540:CDS 45.0%
! TGGTGTTGGAATATGTGGGT+TGG + tig0044340:7620-7639 Msa1464540:CDS 45.0%
!! GTTGGAATATGTGGGTTGGA+AGG + tig0044340:7624-7643 Msa1464540:CDS 45.0%
TACTTCTTGTTCATGGGCAC+TGG + tig0044340:7706-7725 Msa1464540:CDS 45.0%
GCTGTGTTGTGTTGAGAGAG+AGG - tig0044340:3154-3173 Msa1464540:intergenic 50.0%
CAACACAACTTCCCTGTGGT+TGG - tig0044340:3627-3646 Msa1464540:intergenic 50.0%
CAACCACAGGGAAGTTGTGT+TGG + tig0044340:3625-3644 Msa1464540:CDS 50.0%
! ATCCTACGCGATGAAGGTGT+TGG - tig0044340:3884-3903 Msa1464540:intergenic 50.0%
TGACGAATCCTACGCGATGA+AGG - tig0044340:3890-3909 Msa1464540:intergenic 50.0%
CTCCCAAATACAGCTAACGG+AGG - tig0044340:4133-4152 Msa1464540:intergenic 50.0%
CTCCGTTAGCTGTATTTGGG+AGG + tig0044340:4131-4150 Msa1464540:CDS 50.0%
GGATTGGAGGAGACATAGGT+CGG + tig0044340:4216-4235 Msa1464540:CDS 50.0%
! GTCTGGTGATTTTCGGTCGA+AGG + tig0044340:4276-4295 Msa1464540:CDS 50.0%
CCCAACAAGACCATATCAGC+AGG - tig0044340:4358-4377 Msa1464540:intergenic 50.0%
GAGGTATGCCAAGCAGGAAA+CGG + tig0044340:4447-4466 Msa1464540:CDS 50.0%
AACGGCTTCTGTGGTATCGT+CGG + tig0044340:4465-4484 Msa1464540:CDS 50.0%
TTAGATGTGAGCAGCCGAAC+CGG + tig0044340:4512-4531 Msa1464540:CDS 50.0%
TCTTCAGTTGGCAACCTCGT+AGG - tig0044340:4609-4628 Msa1464540:intergenic 50.0%
TCCTTCCAAGAGAAGCAGAC+TGG + tig0044340:4702-4721 Msa1464540:CDS 50.0%
TCCAGTCTGCTTCTCTTGGA+AGG - tig0044340:4706-4725 Msa1464540:intergenic 50.0%
TCCAAGAGAAGCAGACTGGA+AGG + tig0044340:4706-4725 Msa1464540:CDS 50.0%
ACCTTCCAGTCTGCTTCTCT+TGG - tig0044340:4710-4729 Msa1464540:intergenic 50.0%
TGGCCATTGGGATGTGTCTT+TGG + tig0044340:4788-4807 Msa1464540:CDS 50.0%
CAGCCAAAGACACATCCCAA+TGG - tig0044340:4794-4813 Msa1464540:intergenic 50.0%
CATTGGGATGTGTCTTTGGC+TGG + tig0044340:4792-4811 Msa1464540:CDS 50.0%
CCCCAATCTAACCAACTCCA+TGG - tig0044340:4992-5011 Msa1464540:intergenic 50.0%
!! ATGACGCTAGCTCTGGATCA+AGG + tig0044340:5046-5065 Msa1464540:CDS 50.0%
! TTCCGAAGGGCTAGTGTAGA+TGG + tig0044340:5165-5184 Msa1464540:CDS 50.0%
! TCCGAAGGGCTAGTGTAGAT+GGG + tig0044340:5166-5185 Msa1464540:CDS 50.0%
TCCCATCTACACTAGCCCTT+CGG - tig0044340:5170-5189 Msa1464540:intergenic 50.0%
CACATGCAGCTGACACATTC+AGG - tig0044340:5745-5764 Msa1464540:intergenic 50.0%
GTTTCTGCAGCCTCTGCATA+TGG + tig0044340:6108-6127 Msa1464540:CDS 50.0%
ACTCTGTTTGAGCGGACATC+TGG + tig0044340:6135-6154 Msa1464540:CDS 50.0%
CTCTGTTTGAGCGGACATCT+GGG + tig0044340:6136-6155 Msa1464540:CDS 50.0%
CTGATACCGAACTTGAGGAG+TGG + tig0044340:6602-6621 Msa1464540:CDS 50.0%
GCTTTGCCACTCCTCAAGTT+CGG - tig0044340:6611-6630 Msa1464540:intergenic 50.0%
AACTTGAGGAGTGGCAAAGC+AGG + tig0044340:6611-6630 Msa1464540:CDS 50.0%
CAGAAGCCATTGAGTCCCTA+CGG + tig0044340:6761-6780 Msa1464540:CDS 50.0%
CTTGATTCCAGCTTGCCGTA+GGG - tig0044340:6779-6798 Msa1464540:intergenic 50.0%
GCAAGCTGGAATCAAGGTCT+GGG + tig0044340:6783-6802 Msa1464540:CDS 50.0%
GGTGACGCCATAGCCAAATA+TGG + tig0044340:6928-6947 Msa1464540:CDS 50.0%
CCGCACAGATGATATGACAC+TGG + tig0044340:7407-7426 Msa1464540:CDS 50.0%
ATGACACTGGCCATAGGTGA+CGG + tig0044340:7420-7439 Msa1464540:CDS 50.0%
GCTTCATGGACACAGCCTAT+TGG - tig0044340:7531-7550 Msa1464540:intergenic 50.0%
TGGCGGTGATGTATGACAGG+AGG - tig0044340:3560-3579 Msa1464540:intergenic 55.0%
CTGTCATACATCACCGCCAC+CGG + tig0044340:3561-3580 Msa1464540:CDS 55.0%
GGAGGTTGGAGGAGATTCGA+CGG - tig0044340:3606-3625 Msa1464540:intergenic 55.0%
TCCTCCAACCTCCAACCACA+GGG + tig0044340:3613-3632 Msa1464540:CDS 55.0%
ACTTCCCTGTGGTTGGAGGT+TGG - tig0044340:3620-3639 Msa1464540:intergenic 55.0%
CACAACTTCCCTGTGGTTGG+AGG - tig0044340:3624-3643 Msa1464540:intergenic 55.0%
TGGCCAACACAACTTCCCTG+TGG - tig0044340:3631-3650 Msa1464540:intergenic 55.0%
!! TTCCTTTGGAATGCCCCACG+CGG + tig0044340:3759-3778 Msa1464540:CDS 55.0%
!! GGTGCTGCTGATGATGCTGA+TGG - tig0044340:3863-3882 Msa1464540:intergenic 55.0%
CACCAACACCTTCATCGCGT+AGG + tig0044340:3879-3898 Msa1464540:CDS 55.0%
TTGGGGACGAGTGATCCAAG+TGG + tig0044340:4373-4392 Msa1464540:CDS 55.0%
TGGGGACGAGTGATCCAAGT+GGG + tig0044340:4374-4393 Msa1464540:CDS 55.0%
GAAGACGAGGTATGCCAAGC+AGG + tig0044340:4441-4460 Msa1464540:CDS 55.0%
CACAGAAGCCGTTTCCTGCT+TGG - tig0044340:4458-4477 Msa1464540:intergenic 55.0%
CAAGCAGGAAACGGCTTCTG+TGG + tig0044340:4456-4475 Msa1464540:CDS 55.0%
AGAAGCCGCACTGTTCAGCA+TGG - tig0044340:4683-4702 Msa1464540:intergenic 55.0%
ATCACTAGTAGGTCCACCCC+AGG - tig0044340:5557-5576 Msa1464540:intergenic 55.0%
GTTCATCAGGGGATTCTCCC+TGG - tig0044340:6080-6099 Msa1464540:intergenic 55.0%
GAGGAGTGGCAAAGCAGGTA+TGG + tig0044340:6616-6635 Msa1464540:CDS 55.0%
GTGGCAAAGCAGGTATGGAG+AGG + tig0044340:6621-6640 Msa1464540:CDS 55.0%
CGTAGGGACTCAATGGCTTC+TGG - tig0044340:6763-6782 Msa1464540:intergenic 55.0%
AGCTTGCCGTAGGGACTCAA+TGG - tig0044340:6770-6789 Msa1464540:intergenic 55.0%
ATTGAGTCCCTACGGCAAGC+TGG + tig0044340:6769-6788 Msa1464540:CDS 55.0%
CCTTGATTCCAGCTTGCCGT+AGG - tig0044340:6780-6799 Msa1464540:intergenic 55.0%
CCTACGGCAAGCTGGAATCA+AGG + tig0044340:6777-6796 Msa1464540:CDS 55.0%
GGCAAGCTGGAATCAAGGTC+TGG + tig0044340:6782-6801 Msa1464540:CDS 55.0%
GGAGAAGGAACTGGAGTCAG+AGG + tig0044340:7134-7153 Msa1464540:CDS 55.0%
TCGTGTTGCACCCTTGCAGA+AGG + tig0044340:7359-7378 Msa1464540:CDS 55.0%
! CGGTGGCGGTGATGTATGAC+AGG - tig0044340:3563-3582 Msa1464540:intergenic 60.0%
AGGAGATTCGACGGCCTCAC+GGG - tig0044340:3597-3616 Msa1464540:intergenic 60.0%
GAGGAGATTCGACGGCCTCA+CGG - tig0044340:3598-3617 Msa1464540:intergenic 60.0%
CTCCTCCAACCTCCAACCAC+AGG + tig0044340:3612-3631 Msa1464540:CDS 60.0%
TCCCTGTGGTTGGAGGTTGG+AGG - tig0044340:3617-3636 Msa1464540:intergenic 60.0%
!! TCCTTTGGAATGCCCCACGC+GGG + tig0044340:3760-3779 Msa1464540:CDS 60.0%
GTTGCACCCTTGCAGAAGGC+TGG + tig0044340:7363-7382 Msa1464540:CDS 60.0%
!! GGAAGGGCGTCAAGCTGTGA+TGG + tig0044340:7641-7660 Msa1464540:CDS 60.0%
CATCACCGCCACCGGAGATC+CGG + tig0044340:3569-3588 Msa1464540:CDS 65.0%
CCTCACGGGATCCGGATCTC+CGG - tig0044340:3583-3602 Msa1464540:intergenic 65.0%
TTCGACGGCCTCACGGGATC+CGG - tig0044340:3591-3610 Msa1464540:intergenic 65.0%
! TCCCGCGTGGGGCATTCCAA+AGG - tig0044340:3764-3783 Msa1464540:intergenic 65.0%
GAATGCCCCACGCGGGAACA+GGG + tig0044340:3767-3786 Msa1464540:CDS 65.0%
AACAGGGACGCCTGCGATCG+TGG + tig0044340:3783-3802 Msa1464540:CDS 65.0%
ACAGGGACGCCTGCGATCGT+GGG + tig0044340:3784-3803 Msa1464540:CDS 65.0%
CCATTGCACCCCACGATCGC+AGG - tig0044340:3796-3815 Msa1464540:intergenic 65.0%
CCTGCGATCGTGGGGTGCAA+TGG + tig0044340:3793-3812 Msa1464540:CDS 65.0%
GGGATCCGGATCTCCGGTGG+CGG - tig0044340:3577-3596 Msa1464540:intergenic 70.0%
CACGGGATCCGGATCTCCGG+TGG - tig0044340:3580-3599 Msa1464540:intergenic 70.0%
CCGGAGATCCGGATCCCGTG+AGG + tig0044340:3580-3599 Msa1464540:CDS 70.0%
GGAATGCCCCACGCGGGAAC+AGG + tig0044340:3766-3785 Msa1464540:CDS 70.0%
AGGCGTCCCTGTTCCCGCGT+GGG - tig0044340:3776-3795 Msa1464540:intergenic 70.0%
CAGGGACGCCTGCGATCGTG+GGG + tig0044340:3785-3804 Msa1464540:CDS 70.0%
GGCGTCCCTGTTCCCGCGTG+GGG - tig0044340:3775-3794 Msa1464540:intergenic 75.0%
CAGGCGTCCCTGTTCCCGCG+TGG - tig0044340:3777-3796 Msa1464540:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0044340 gene 3053 7734 3053 ID=Msa1464540;Name=Msa1464540
tig0044340 mRNA 3053 7734 3053 ID=Msa1464540-mRNA-1;Parent=Msa1464540;Name=Msa1464540-mRNA-1;_AED=0.04;_eAED=0.04;_QI=268|1|0.83|1|0.8|0.66|6|0|1044
tig0044340 exon 3053 3224 3053 ID=Msa1464540-mRNA-1:exon:24467;Parent=Msa1464540-mRNA-1
tig0044340 exon 3419 5231 3419 ID=Msa1464540-mRNA-1:exon:24468;Parent=Msa1464540-mRNA-1
tig0044340 exon 5845 6193 5845 ID=Msa1464540-mRNA-1:exon:24469;Parent=Msa1464540-mRNA-1
tig0044340 exon 6366 7155 6366 ID=Msa1464540-mRNA-1:exon:24470;Parent=Msa1464540-mRNA-1
tig0044340 exon 7318 7441 7318 ID=Msa1464540-mRNA-1:exon:24471;Parent=Msa1464540-mRNA-1
tig0044340 exon 7583 7734 7583 ID=Msa1464540-mRNA-1:exon:24472;Parent=Msa1464540-mRNA-1
tig0044340 five_prime_UTR 3053 3224 3053 ID=Msa1464540-mRNA-1:five_prime_utr;Parent=Msa1464540-mRNA-1
tig0044340 five_prime_UTR 3419 3514 3419 ID=Msa1464540-mRNA-1:five_prime_utr;Parent=Msa1464540-mRNA-1
tig0044340 CDS 3515 5231 3515 ID=Msa1464540-mRNA-1:cds;Parent=Msa1464540-mRNA-1
tig0044340 CDS 5845 6193 5845 ID=Msa1464540-mRNA-1:cds;Parent=Msa1464540-mRNA-1
tig0044340 CDS 6366 7155 6366 ID=Msa1464540-mRNA-1:cds;Parent=Msa1464540-mRNA-1
tig0044340 CDS 7318 7441 7318 ID=Msa1464540-mRNA-1:cds;Parent=Msa1464540-mRNA-1
tig0044340 CDS 7583 7734 7583 ID=Msa1464540-mRNA-1:cds;Parent=Msa1464540-mRNA-1
Gene Sequence

>Msa1464540

ATGAGTTCCGATCAACCACTACTTTCCGAACCAGATCTTGTTCCTCCTGTCATACATCACCGCCACCGGAGATCCGGATCCCGTGAGGCCGTCGAATCTCCTCCAACCTCCAACCACAGGGAAGTTGTGTTGGCCAAAGATTGCAGCTTCCACTCAGCAGTTAACAACAACAACAACAATAACAGTAGCAGCATTTCCACTGCATCAGCTTCTGTTACAGAGCTTCAAACTCCTGATTCGCAGTTTCCTTTGGAATGCCCCACGCGGGAACAGGGACGCCTGCGATCGTGGGGTGCAATGGAACTGCATGATGTTAATACTGTGCCCTTTGAAATTTCAACAACTCCATCAGCATCATCAGCAGCACCAACACCTTCATCGCGTAGGATTCGTCATAAAAGTGTGCAGTTTGATGACCAGATTTTACATGAAGACAGTGCTAGGTTGATTTATATAAATGATCCTAAGAAAACTAATGATAAGTATGAGTTTACTGGGAATGAGATTCGGACTAGTAGATACACTTTTATCACTTTCTTGCCAAAGAATTTATTTATTCAGTTTCATAGGGTTGCTTATTTGTATTTCCTTGCTATTGCTGCACTTAATCAGCTTCCTCCGTTAGCTGTATTTGGGAGGACGGTGTCCCTTTTTCCGCTTTTGTTTGTTCTTTTGGTTACTGCTATTAAGGATGGATATGAGGATTGGAGGAGACATAGGTCGGATAACAATGAGAATAATCGCGAGTCTTTGGTTCTTCAGTCTGGTGATTTTCGGTCGAAGGTTTGGAAAAAGATTGAGGCTGGTGAGGTTGTTAAGATTTTTGCTGATGAGACCATTCCTGCTGATATGGTCTTGTTGGGGACGAGTGATCCAAGTGGGCTTGCCTATATTCAGACAATGAATTTGGATGGAGAGTCGAATTTGAAGACGAGGTATGCCAAGCAGGAAACGGCTTCTGTGGTATCGTCGGAAGTTTGTGATGTTTCTGGGATTATTAGATGTGAGCAGCCGAACCGGAATATTTATGAGTTCACAGCCAATATGGAGTTCAATGGAATTAAGTTTTCTCTCAGCCAGTCAAACATTGTCCTACGAGGTTGCCAACTGAAGAACACAGATTGGATAATTGGTGTTGTGGTTTATGCTGGACAGGAAACAAAAGCCATGCTGAACAGTGCGGCTTCTCCTTCCAAGAGAAGCAGACTGGAAGGTTATATGAATAGAGAAACACTTTGGTTGTCGATTTTTCTTTGTATCATGTGTTTGGTTGTGGCCATTGGGATGTGTCTTTGGCTGGTACGCCACAAGAACCAGCTTGATACCTTGCCTTACTACAGAAAAACATACCTTAACAATGGCCCGGATAAAGGAAAGAAATATAAGTACTATGGGATACCAATGGAAGCGTTTTTCTCCTTTTTGAGTTCTGTGATAGTGTTTCAGATAATGATTCCCATATCTCTTTACATCACCATGGAGTTGGTTAGATTGGGGCAGTCATACTTCATGATTGAAGACTTGGATATGTATGACGCTAGCTCTGGATCAAGGTTTCAGTGTAGATCATTAAATATAAATGAAGATTTGGGTCAAATACGCTATATATTTTCAGACAAGACAGGAACACTTACAGAAAACAAGATGGAATTCCGAAGGGCTAGTGTAGATGGGAAGAATTACGGGAGCACCTTGCTTACTGCTGATAATAGTTCAGCATTGACAGATGTTATTCGTAAACAGAGATGGAAACTCAAATCTGAAATTGCAGTTGATCCCAAACTAATGAACATGTTGCATAAAAACTCAAACAGAGATGAAAGAATAGTTGCTCATGAGTTTTTTCTTACATTGGCTGCCTGTAATACTGTGATTCCCATACTTAACGATGGTGGATTTTCTGGTTGTGGAACAAGTGAATTAAATGAATATGCAGAATGCATTGATTACCAGGGAGAATCCCCTGATGAACAAGCTCTAGTTTCTGCAGCCTCTGCATATGGATACACTCTGTTTGAGCGGACATCTGGGCATATTGTTATTGACATCAATGGTGAGAAACTCAGATTGGACGTATTGGGCTTGCATGAGTTTGATAGCGTGCGAAAGAGAATGTCCGTTGTTATTCGGTTTCCTGACAATGTTGTAAAGGTGCTAGTCAAAGGCGCTGATACATCAATGTTTAGCATTTTGGCAAATGGCAGTGAGAGCAACAATAGCTTATTGCATGCAACTCAGAGTCATTTGTGTGAATATTCTTCACAAGGTTTGCGTACCCTTGTAGTTGCCTCTAGAAGTCTTTCTGATACCGAACTTGAGGAGTGGCAAAGCAGGTATGGAGAGGCAAGCACTGCGTTAACTGACAGAGCCAGTAAACTACGTCAAACAGCAGCTCTTATAGAATGCAATTTAAATCTACTTGGAGCAACTGGAATTGAGGACAAGCTGCAAGAGGGTGTACCAGAAGCCATTGAGTCCCTACGGCAAGCTGGAATCAAGGTCTGGGTTCTTACCGGTGATAAACAAGAGACAGCAATCTCAATTGGTCTTTCCTGCAAACTTCTCAGTTCAGATATGCAGCAAATTGTTATAAACGGCACTTCAGAGGAGGAATGTAGAAATCTTTTGGGTGACGCCATAGCCAAATATGGTGTGAGATCTTCATGTAGAGGGAATCAGAATCTGAGGAATAAAACCAATGCTGAACATGGTGATCTTGATATTTCCAATGGTTCAAAGTCAATGAGTTTGCCCAAATGGAATCCAGGAAAAGAAGAAGGAACTGATACTCCATTGGCGCTCATAATTGATGGGAATAGTTTGGTTTATATTTTGGAGAAGGAACTGGAGTCAGAGCTTTTTGACCTTGCAATTTCCTGTAAGGTTGTGCTGTGTTGTCGTGTTGCACCCTTGCAGAAGGCTGGAATTGTTGATCTGATAAAGAGCCGCACAGATGATATGACACTGGCCATAGGTGACGGGGCCAATGACGTGTCAATGATCCAAATGGCAGATGTTGGTGTTGGAATATGTGGGTTGGAAGGGCGTCAAGCTGTGATGGCATCAGATTTTGCTATGGGACAATTTCAGTTTTTGAAAAGATTACTTCTTGTTCATGGGCACTGGAATTAC
Protein sequence

>Msa1464540

MSSDQPLLSEPDLVPPVIHHRHRRSGSREAVESPPTSNHREVVLAKDCSFHSAVNNNNNNNSSSISTASASVTELQTPDSQFPLECPTREQGRLRSWGAMELHDVNTVPFEISTTPSASSAAPTPSSRRIRHKSVQFDDQILHEDSARLIYINDPKKTNDKYEFTGNEIRTSRYTFITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLLVTAIKDGYEDWRRHRSDNNENNRESLVLQSGDFRSKVWKKIEAGEVVKIFADETIPADMVLLGTSDPSGLAYIQTMNLDGESNLKTRYAKQETASVVSSEVCDVSGIIRCEQPNRNIYEFTANMEFNGIKFSLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMLNSAASPSKRSRLEGYMNRETLWLSIFLCIMCLVVAIGMCLWLVRHKNQLDTLPYYRKTYLNNGPDKGKKYKYYGIPMEAFFSFLSSVIVFQIMIPISLYITMELVRLGQSYFMIEDLDMYDASSGSRFQCRSLNINEDLGQIRYIFSDKTGTLTENKMEFRRASVDGKNYGSTLLTADNSSALTDVIRKQRWKLKSEIAVDPKLMNMLHKNSNRDERIVAHEFFLTLAACNTVIPILNDGGFSGCGTSELNEYAECIDYQGESPDEQALVSAASAYGYTLFERTSGHIVIDINGEKLRLDVLGLHEFDSVRKRMSVVIRFPDNVVKVLVKGADTSMFSILANGSESNNSLLHATQSHLCEYSSQGLRTLVVASRSLSDTELEEWQSRYGEASTALTDRASKLRQTAALIECNLNLLGATGIEDKLQEGVPEAIESLRQAGIKVWVLTGDKQETAISIGLSCKLLSSDMQQIVINGTSEEECRNLLGDAIAKYGVRSSCRGNQNLRNKTNAEHGDLDISNGSKSMSLPKWNPGKEEGTDTPLALIIDGNSLVYILEKELESELFDLAISCKVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGLEGRQAVMASDFAMGQFQFLKRLLLVHGHWNY