AlfalfaGEDB | Msa0705500

M. sativa cultivar zhongmu-4 / Msa0705500

KEGG: K19801
GO: GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004430 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012506 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017016 GO:0017137 GO:0019637 GO:0019899 GO:0019900 GO:0019901 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0030258 GO:0030659 GO:0031090 GO:0031267 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0035556 GO:0035618 GO:0035619 GO:0040007 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044433 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044706 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0048015 GO:0048017 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051704 GO:0051716 GO:0052742 GO:0060560 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0099402 GO:0120025 GO:0120038 GO:1905392
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0705500	KEH20900.1	99.205	755	6	0	1	755	1	755	0.0	1535

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0705500	sp\|Q9FMJ0\|P4KB1_ARATH	62.642	795	247	14	1	755	3	787	0.0	934

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0705500	A0A072U503	99.205	755	6	0	1	755	1	755	0.0	1535

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0035320	Msa0705500	0.854792	9.719773e-62	-8.615850e-47
Msa0095830	Msa0705500	0.811889	5.586920e-51	-8.615850e-47
Msa0222160	Msa0705500	0.826865	2.145210e-54	-8.615850e-47
Msa0263680	Msa0705500	0.833893	4.104983e-56	-8.615850e-47
Msa0338960	Msa0705500	0.810711	1.006170e-50	-8.615850e-47
Msa0379580	Msa0705500	0.813513	2.463626e-51	-8.615850e-47
Msa0429010	Msa0705500	0.854739	1.006911e-61	-8.615850e-47
Msa0467310	Msa0705500	0.870652	1.241085e-66	-8.615850e-47
Msa0474550	Msa0705500	0.841489	4.608348e-58	-8.615850e-47
Msa0532380	Msa0705500	0.802720	4.907180e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0705500	MtrunA17_Chr8g0384191	99.205	755	6	0	1	755	1	755	0.0	1535
Msa0705500	MtrunA17_Chr3g0130091	75.926	216	48	2	1	214	1	214	3.45e-111	343

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0705500	AT5G64070.2	62.642	795	247	14	1	755	3	787	936
Msa0705500	AT5G64070.1	62.642	795	247	14	1	755	3	787	934
Msa0705500	AT5G09350.1	60.908	793	259	12	1	755	3	782	923

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Find 186 sgRNAs with CRISPR-Local

Find 433 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGATGGTTTCTTTCAA+AGG	0.440298	4_4:-78231894	Msa0705500:CDS
AAAGCGTCTCCATTTGCCAA+AGG	0.648853	4_4:+78228023	None:intergenic
AAAGGTTCTTAAGAGATAGT+AGG	0.351646	4_4:-78231948	Msa0705500:CDS
AAAGTTTATGCCAAGTCCTA+AGG	0.486629	4_4:-78232163	Msa0705500:CDS
AACATGACAGTGATCTGGAA+TGG	0.532257	4_4:-78227800	Msa0705500:CDS
AACTTATCCAATGACGGACT+AGG	0.592275	4_4:+78232534	None:intergenic
AAGAATTTGGGGATTGTTGG+CGG	0.444189	4_4:+78233110	None:intergenic
AAGAGAACAGCTTCATCTAC+TGG	0.505823	4_4:+78228261	None:intergenic
AAGCAAGAGGTGAAAGAATT+TGG	0.159637	4_4:+78233097	None:intergenic
AAGCTGTTCTCTTGAATTCT+CGG	0.398115	4_4:-78228251	Msa0705500:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTTGAATTGAGGAAACGA+AGG	+	chr4_4:78227906-78227925	None:intergenic	30.0%
TAGTAGATTGAAAAATGGTG+CGG	-	chr4_4:78228218-78228237	Msa0705500:CDS	30.0%
ACTAGTGATTCTAGTGAAAA+TGG	-	chr4_4:78228304-78228323	Msa0705500:CDS	30.0%
ATCACAAACTTATCCAATGA+CGG	+	chr4_4:78228511-78228530	None:intergenic	30.0%
GATGAAAATGACAAAGACTT+CGG	+	chr4_4:78228787-78228806	None:intergenic	30.0%
AAAGGTTCTTAAGAGATAGT+AGG	-	chr4_4:78229088-78229107	Msa0705500:intron	30.0%
AAGGTTCTTAAGAGATAGTA+GGG	-	chr4_4:78229089-78229108	Msa0705500:intron	30.0%
AAAAGGATGGTTTCTTTCAA+AGG	-	chr4_4:78229142-78229161	Msa0705500:CDS	30.0%
AAAAAATCCTTCTGAACTTG+AGG	+	chr4_4:78229205-78229224	None:intergenic	30.0%
ATGAAGAGGATGAAAAAGAT+GGG	-	chr4_4:78229412-78229431	Msa0705500:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	78227698	78233360	78227698	ID=Msa0705500;Name=Msa0705500
chr4_4	mRNA	78227698	78233360	78227698	ID=Msa0705500-mRNA-1;Parent=Msa0705500;Name=Msa0705500-mRNA-1;_AED=0.01;_eAED=0.01;_QI=534\|1\|0.8\|1\|1\|1\|5\|0\|755
chr4_4	exon	78227698	78228094	78227698	ID=Msa0705500-mRNA-1:exon:24915;Parent=Msa0705500-mRNA-1
chr4_4	exon	78228198	78228330	78228198	ID=Msa0705500-mRNA-1:exon:24914;Parent=Msa0705500-mRNA-1
chr4_4	exon	78228935	78228983	78228935	ID=Msa0705500-mRNA-1:exon:24913;Parent=Msa0705500-mRNA-1
chr4_4	exon	78229102	78229290	78229102	ID=Msa0705500-mRNA-1:exon:24912;Parent=Msa0705500-mRNA-1
chr4_4	exon	78231330	78233360	78231330	ID=Msa0705500-mRNA-1:exon:24911;Parent=Msa0705500-mRNA-1
chr4_4	five_prime_UTR	78232827	78233360	78232827	ID=Msa0705500-mRNA-1:five_prime_utr;Parent=Msa0705500-mRNA-1
chr4_4	CDS	78231330	78232826	78231330	ID=Msa0705500-mRNA-1:cds;Parent=Msa0705500-mRNA-1
chr4_4	CDS	78229102	78229290	78229102	ID=Msa0705500-mRNA-1:cds;Parent=Msa0705500-mRNA-1
chr4_4	CDS	78228935	78228983	78228935	ID=Msa0705500-mRNA-1:cds;Parent=Msa0705500-mRNA-1
chr4_4	CDS	78228198	78228330	78228198	ID=Msa0705500-mRNA-1:cds;Parent=Msa0705500-mRNA-1
chr4_4	CDS	78227698	78228094	78227698	ID=Msa0705500-mRNA-1:cds;Parent=Msa0705500-mRNA-1

Gene Sequence

>Msa0705500

ATGGTGCGGTTATTAGGGTTCGCTCGCGGTTACGCAGATGAACCCAGGGAAATTGAGTCAAAGTCAAACCTGACTAGTGATTCTAGTGAAAATGGTTGGCTTATTAGGTTCTTTGATTCGTCGTTTTTTTGTGAATGGATTGCTGTTAGTTACTTGTACAAGCATGATCATGCCGGGGTGCGGGATTATCTTTGCAATAGAATGTATACTCTTCCCTTGACAGGGCTTGAGAGTTATTTGTTTCAGATTTGTTATATGATGATACACAAGCCTAGTCCGTCATTGGATAAGTTTGTGATAGATATGTGCTCCAAGTCGCTTAAGATTGCATTGAAAGTGCATTGGTTTTTGATGGCGGAGTTGGAGGATTCTGATGATAATGATGGGATTAGTAGGATTCAGGAGAAGTGTCAGATTGCAGCTACTTTGATGGGTGAGTGGCCGCCTTTGATACGACCTCATACTGAACCTCCGAGTGCTGGAGGTAAAAGTCAAGTTTTGAATAGGTTACTTTCGAGTAAAAATCGTTTATTATCTTTAACAACCTCACCGCCGAAGTCTTTGTCATTTTCATCTTCACCGGGAAATAATATGCAAGAGGATGGAAATCCGCTGTCTCCTGATGAGAATAGGATATTTAAAAAGTTTATGCCAAGTCCTAAGGTTAGAGATGCTTTGCTTTTTAGAAAGTCAGCGGATAAAGATGACGGTGATTCTGAAAAGGATGGGTTTTTCAAGAGACTTTTAAGAGATGGCAAAGGTGATGATGAGCTCGGCCAAAAAATTCGTGATGCATTTCATTTTCGGAAGTCGTCCGAGAAAGATGCCTTAGACTCTGAGAAAGAGAATTTCTTTAAAAGGTTCTTAAGAGATAGTAGGGACAGTACTAGAGGTGATGAGGAAGAATCTGAAAAGGATGGTTTCTTTCAAAGGATCTTAAGAGAAAGTAGAAGCGAAGATGAGGATGTGTCCTCAAGTTCAGAAGGATTTTTTAAGAAGTTATTTCGGGATAGTAAGAATGATTCTGAGGACAAAACGGATTCAAAAACAGTGGAAGATGAAGAGAAAGATGGACTTTTCCGAAAGTTTTTCCGGGAGAAATTCGAAGATAAGAAAGATGCGCGTGACAGAAACGACAATAGAAATGTTCCTAATTCTGAAGAGAAATGTCCAAAACCTGATGAAGAGGATGAAAAAGATGGGTTTTTCCGGAAATTCTTCAGGGATAAATTTGAGGACAAGAAAGACACAAAAGATAAAATTGAAGAAGATACTGCCAATGGCGAGGAAGAAGAGCCTTCTGAACTTTCCTTGTTCAAAAGGCTATTCCGTGTGCACCCTGAAGACGACAAAAGTAGTCCAGTCAATGAAAATAGCAATAACGGTGGTTTATTTCAAAGTAGTCCAGGTACAGAGAATTTTTTCCGTAAATTGTTCAAAGACCGTGACCGTTCAATTGAAGATTCAGAGCTGCTGGGGTCAAAGAGGCAGAAAGAGAAGCATCCTGGGTCCCCAATGCCGCAAAGTGAAAAATCGAGCACAAAGCCCCCATTACCGATCAATCCATCTCAGTTCCGTAAAGGGGCTTACCATGACTCGTTGGAGTTTGTTCAGTCACTATGTGACACATCTTATGGGTTAGTGGATGTATTTCCAACTGAAGATCGCAAGAGTGCTCTTCAAGAGTCACTTAGAGAGATCAATGTACATGTAACAGAGGTTCAGAATACTGGAGGAGTCTGTTTCCCACTGGGAAAGGGCATGTATCGCGTGCTTCATATGCCAGTAGATGAAGCTGTTCTCTTGAATTCTCGGGAGAAGGCACCTTACATGATATGCATCGAAGTTTTGAGATGTGAAATGCCAAGTAATTTCAAGGAGACATCCAGTTCTCAGAAGCTTTCTCAAGGTGGAATTCCTTTGGCAAATGGAGACGCTTTCTTGCAAAAACCACCCCCTTGGGCTTATCCATTATGGACAGCACAAGAGGTGTACCGTAATAGCAATGATAGGATGTCCAGATCGACTGCTCAGGCAATTGACCAGGCAATGACTCATGTATCTGAGCCAAAATTTGTTAGCCTGAATCTGTCAGTGGAAACACGGTATAATGAGGGTGTATATGAAGCATCAGGAGCAGAACATGACAGTGATCTGGAATGGGTACGAGTAGTATTGACAGCTGATCCTGGGGTTAGGTTGGAAGATATTGAGGATAAAGCACCACCTCGGAAAAAGGAACATCGCCGTGTTCCAAGTACAGTG

Protein sequence

>Msa0705500

MVRLLGFARGYADEPREIESKSNLTSDSSENGWLIRFFDSSFFCEWIAVSYLYKHDHAGVRDYLCNRMYTLPLTGLESYLFQICYMMIHKPSPSLDKFVIDMCSKSLKIALKVHWFLMAELEDSDDNDGISRIQEKCQIAATLMGEWPPLIRPHTEPPSAGGKSQVLNRLLSSKNRLLSLTTSPPKSLSFSSSPGNNMQEDGNPLSPDENRIFKKFMPSPKVRDALLFRKSADKDDGDSEKDGFFKRLLRDGKGDDELGQKIRDAFHFRKSSEKDALDSEKENFFKRFLRDSRDSTRGDEEESEKDGFFQRILRESRSEDEDVSSSSEGFFKKLFRDSKNDSEDKTDSKTVEDEEKDGLFRKFFREKFEDKKDARDRNDNRNVPNSEEKCPKPDEEDEKDGFFRKFFRDKFEDKKDTKDKIEEDTANGEEEEPSELSLFKRLFRVHPEDDKSSPVNENSNNGGLFQSSPGTENFFRKLFKDRDRSIEDSELLGSKRQKEKHPGSPMPQSEKSSTKPPLPINPSQFRKGAYHDSLEFVQSLCDTSYGLVDVFPTEDRKSALQESLREINVHVTEVQNTGGVCFPLGKGMYRVLHMPVDEAVLLNSREKAPYMICIEVLRCEMPSNFKETSSSQKLSQGGIPLANGDAFLQKPPPWAYPLWTAQEVYRNSNDRMSRSTAQAIDQAMTHVSEPKFVSLNLSVETRYNEGVYEASGAEHDSDLEWVRVVLTADPGVRLEDIEDKAPPRKKEHRRVPSTV