Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465050 | XP_024634152.1 | 90.759 | 303 | 27 | 1 | 1 | 303 | 488 | 789 | 0.0 | 564 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465050 | G7J7X1 | 89.769 | 303 | 30 | 1 | 1 | 303 | 488 | 789 | 0.0 | 556 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1464810 | Msa1465050 | 0.800149 | 1.649944e-48 | -8.615850e-47 |
| Msa0607050 | Msa1465050 | 0.808801 | 2.590591e-50 | -8.615850e-47 |
| Msa0690150 | Msa1465050 | 0.807387 | 5.182668e-50 | -8.615850e-47 |
| Msa0709400 | Msa1465050 | 0.819288 | 1.256707e-52 | -8.615850e-47 |
| Msa0403950 | Msa1465050 | 0.911193 | 8.017808e-83 | -8.615850e-47 |
| Msa0403970 | Msa1465050 | 0.896434 | 3.702885e-76 | -8.615850e-47 |
| Msa0407140 | Msa1465050 | 0.822999 | 1.753441e-53 | -8.615850e-47 |
| Msa1124960 | Msa1465050 | 0.816690 | 4.856682e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465050 | MtrunA17_Chr3g0109621 | 90.441 | 272 | 25 | 1 | 32 | 303 | 1 | 271 | 0.0 | 502 |
| Msa1465050 | MtrunA17_Chr3g0109641 | 77.707 | 314 | 46 | 3 | 1 | 303 | 544 | 844 | 1.26e-166 | 484 |
| Msa1465050 | MtrunA17_Chr3g0109601 | 76.812 | 276 | 59 | 2 | 32 | 303 | 1 | 275 | 3.82e-149 | 419 |
| Msa1465050 | MtrunA17_Chr3g0109571 | 70.182 | 275 | 74 | 5 | 32 | 303 | 1 | 270 | 3.26e-128 | 366 |
| Msa1465050 | MtrunA17_Chr3g0109651 | 62.587 | 286 | 73 | 4 | 32 | 303 | 1 | 266 | 1.44e-113 | 329 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465050 | AT5G08430.2 | 61.404 | 57 | 22 | 0 | 1 | 57 | 275 | 331 | 7.53e-16 | 77.8 |
| Msa1465050 | AT5G63700.1 | 50.000 | 60 | 30 | 0 | 1 | 60 | 524 | 583 | 8.69e-14 | 72.0 |
| Msa1465050 | AT5G23480.3 | 49.091 | 55 | 28 | 0 | 1 | 55 | 272 | 326 | 7.81e-12 | 65.9 |
| Msa1465050 | AT5G23480.2 | 49.091 | 55 | 28 | 0 | 1 | 55 | 272 | 326 | 7.81e-12 | 65.9 |
| Msa1465050 | AT5G23480.5 | 49.091 | 55 | 28 | 0 | 1 | 55 | 272 | 326 | 7.81e-12 | 65.9 |
| Msa1465050 | AT5G23480.4 | 49.091 | 55 | 28 | 0 | 1 | 55 | 272 | 326 | 7.81e-12 | 65.9 |
| Msa1465050 | AT5G23480.6 | 49.091 | 55 | 28 | 0 | 1 | 55 | 272 | 326 | 7.81e-12 | 65.9 |
Find 75 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTAGAGTTTGATTCTTTA+AGG | 0.138820 | tig0044864:-1272 | Msa1465050:intergenic |
| ATCATTGACGATCGCCTTAA+TGG | 0.232256 | tig0044864:-1442 | Msa1465050:intergenic |
| ACCAGTTCAGGAATTACTTT+TGG | 0.265948 | tig0044864:-457 | Msa1465050:intergenic |
| TACTGTTTCGGATCCCATTA+AGG | 0.282683 | tig0044864:+1428 | Msa1465050:CDS |
| ATTTCCAACAAGCAGCTATT+TGG | 0.297505 | tig0044864:-1829 | Msa1465050:intergenic |
| TTTGATTTACTTTCACATTA+GGG | 0.311014 | tig0044864:-1732 | Msa1465050:intergenic |
| AAGGCGAAGCGTTACTGTTT+CGG | 0.311093 | tig0044864:+1416 | Msa1465050:CDS |
| CTTCCAGACCTTGAAGTCTA+AGG | 0.315086 | tig0044864:-1652 | Msa1465050:intergenic |
| AATAGTAAAGTCACTTCATC+TGG | 0.382808 | tig0044864:+1501 | Msa1465050:CDS |
| TCCAAAAGTAATTCCTGAAC+TGG | 0.386561 | tig0044864:+456 | Msa1465050:CDS |
| ACTCAAACACTGGAGTGAAT+TGG | 0.397301 | tig0044864:+1614 | Msa1465050:CDS |
| CAGTACCAAATAGGAATATC+AGG | 0.398660 | tig0044864:-1543 | Msa1465050:intergenic |
| TTCACCAAATAGCTGCTTGT+TGG | 0.401676 | tig0044864:+1825 | Msa1465050:three_prime_UTR |
| ATATGCTCCCTTAGACTTCA+AGG | 0.405205 | tig0044864:+1644 | Msa1465050:CDS |
| AGGGTCCTGATATTCCTATT+TGG | 0.407134 | tig0044864:+1538 | Msa1465050:CDS |
| ACTTAATAAACGTGATTGTT+CGG | 0.410195 | tig0044864:-428 | Msa1465050:intergenic |
| GGACAGTACTCCACATATAA+TGG | 0.429312 | tig0044864:+577 | Msa1465050:CDS |
| ATACCCGAGCAGTACCAAAT+AGG | 0.431291 | tig0044864:-1552 | Msa1465050:intergenic |
| CCATACACTTGCTCAGTACA+TGG | 0.433799 | tig0044864:+378 | Msa1465050:intron |
| GTGAAAGTAAATCAAAATGA+AGG | 0.437621 | tig0044864:+1739 | Msa1465050:three_prime_UTR |
| TCATTGACGATCGCCTTAAT+GGG | 0.439449 | tig0044864:-1441 | Msa1465050:intergenic |
| TATTGATCGGGCCAATGAAA+AGG | 0.452894 | tig0044864:+222 | Msa1465050:CDS |
| GACTTCAAGGTCTGGAAGAC+GGG | 0.455856 | tig0044864:+1657 | Msa1465050:CDS |
| GATAAGAGAACAGATGTTGT+AGG | 0.457555 | tig0044864:+616 | Msa1465050:CDS |
| CTCCCTTAGACTTCAAGGTC+TGG | 0.458388 | tig0044864:+1649 | Msa1465050:CDS |
| CAGTGTTTGAGTACAGTCAT+TGG | 0.459578 | tig0044864:-1603 | Msa1465050:intergenic |
| TATTCCTATTTGGTACTGCT+CGG | 0.461241 | tig0044864:+1548 | Msa1465050:CDS |
| GGAATCTTCTAGTGACAGAT+TGG | 0.473314 | tig0044864:-485 | Msa1465050:intergenic |
| TTTGATTCTTTAAGGAGTGC+AGG | 0.487505 | tig0044864:-1264 | Msa1465050:intergenic |
| TTGAGTACAGTCATTGGAAA+AGG | 0.490512 | tig0044864:-1597 | Msa1465050:intergenic |
| TGGTACTGCTCGGGTATTCG+TGG | 0.491416 | tig0044864:+1558 | Msa1465050:CDS |
| ATTCCTATTTGGTACTGCTC+GGG | 0.492363 | tig0044864:+1549 | Msa1465050:CDS |
| GATATAGTGTTACTTGATTG+AGG | 0.493104 | tig0044864:-1327 | Msa1465050:intergenic |
| GTTACGAAATCGTATTGATC+GGG | 0.495111 | tig0044864:+210 | Msa1465050:CDS |
| TGCTCGGGTATTCGTGGCTG+TGG | 0.499899 | tig0044864:+1564 | Msa1465050:CDS |
| TCAACAGTGGCAGGAAAGGC+TGG | 0.504019 | tig0044864:-1195 | Msa1465050:intergenic |
| AGATTGGTATCAACCAGTTC+AGG | 0.507246 | tig0044864:-469 | Msa1465050:intergenic |
| GTTGAGCAATTATCTACCCT+TGG | 0.513815 | tig0044864:+1213 | Msa1465050:CDS |
| CTTTGACAAATTCTGAGAGA+TGG | 0.515188 | tig0044864:+1890 | Msa1465050:three_prime_UTR |
| CAATGACTGTACTCAAACAC+TGG | 0.517637 | tig0044864:+1604 | Msa1465050:CDS |
| CAGGAAAGGCTGGATCATCT+TGG | 0.518951 | tig0044864:-1185 | Msa1465050:intergenic |
| GATAATTGCTCAACAGTGGC+AGG | 0.525195 | tig0044864:-1204 | Msa1465050:intergenic |
| ATTGATCGGGCCAATGAAAA+GGG | 0.526066 | tig0044864:+223 | Msa1465050:CDS |
| CATCTCTCAGAATTTGTCAA+AGG | 0.526662 | tig0044864:-1889 | Msa1465050:intergenic |
| TTGCTCAACAGTGGCAGGAA+AGG | 0.527595 | tig0044864:-1199 | Msa1465050:intergenic |
| TGACTTAGGTCCGAAATCTC+CGG | 0.537439 | tig0044864:+1152 | Msa1465050:intron |
| GAAGTCTAAGGGAGCATATG+TGG | 0.537531 | tig0044864:-1640 | None:intergenic |
| TTGAGCAAAACCATTATATG+TGG | 0.543150 | tig0044864:-587 | None:intergenic |
| TTACATGGAAGTGGATCTCA+AGG | 0.551979 | tig0044864:+176 | None:intergenic |
| TGTTACGAAATCGTATTGAT+CGG | 0.553902 | tig0044864:+209 | Msa1465050:CDS |
| TTCCAGACCTTGAAGTCTAA+GGG | 0.554594 | tig0044864:-1651 | Msa1465050:intergenic |
| GGATGTCAATCATACAGTAA+AGG | 0.558250 | tig0044864:+1392 | Msa1465050:CDS |
| CAGAAATCTGAGTATTAACA+TGG | 0.561025 | tig0044864:+1371 | Msa1465050:CDS |
| AGACTTCAAGGTCTGGAAGA+CGG | 0.561223 | tig0044864:+1656 | Msa1465050:CDS |
| AGAGTTACAATTCTCTCCAA+TGG | 0.561579 | tig0044864:-551 | Msa1465050:intergenic |
| GACGGGCGAGAGTGAAAGAG+AGG | 0.564639 | tig0044864:+1674 | Msa1465050:CDS |
| ATTGGAGAGAATTGTAACTC+TGG | 0.565994 | tig0044864:+553 | Msa1465050:CDS |
| TGAAAGTAAATCAAAATGAA+GGG | 0.569136 | tig0044864:+1740 | Msa1465050:three_prime_UTR |
| ATCGGGCCAATGAAAAGGGA+TGG | 0.569521 | tig0044864:+227 | Msa1465050:CDS |
| TTTGTCTTCAGAAGCACCAA+GGG | 0.586501 | tig0044864:-1229 | Msa1465050:intergenic |
| GAATTGCAAGAAGTAGCCAT+TGG | 0.586633 | tig0044864:+535 | Msa1465050:CDS |
| TTTAAGTGACAGTGATGAAG+AGG | 0.590984 | tig0044864:+1473 | Msa1465050:CDS |
| TCAATCATACAGTAAAGGAA+AGG | 0.592932 | tig0044864:+1397 | Msa1465050:CDS |
| ATTCGTGGCTGTGGAACAAG+AGG | 0.594921 | tig0044864:+1573 | Msa1465050:CDS |
| TAACTATTGATAAGCAACAC+TGG | 0.603842 | tig0044864:-1786 | Msa1465050:intergenic |
| TCTGGAAGAAAGAGAGTGGA+GGG | 0.610620 | tig0044864:+1519 | Msa1465050:CDS |
| TTCATCTGGAAGAAAGAGAG+TGG | 0.613592 | tig0044864:+1515 | Msa1465050:CDS |
| ATCTGGAAGAAAGAGAGTGG+AGG | 0.617982 | tig0044864:+1518 | Msa1465050:CDS |
| CTTTGTCTTCAGAAGCACCA+AGG | 0.618281 | tig0044864:-1230 | Msa1465050:intergenic |
| GCTTCTGAAGACAAAGATGA+TGG | 0.629492 | tig0044864:+1237 | Msa1465050:CDS |
| GGAGAGAATTGTAACTCTGG+AGG | 0.648805 | tig0044864:+556 | Msa1465050:CDS |
| GGGCCAATGAAAAGGGATGG+AGG | 0.657726 | tig0044864:+230 | Msa1465050:CDS |
| GGTAGATAATTGCTCAACAG+TGG | 0.676348 | tig0044864:-1208 | Msa1465050:intergenic |
| TTCGTGGCTGTGGAACAAGA+GGG | 0.724248 | tig0044864:+1574 | Msa1465050:CDS |
| TACATGGAAGTGGATCTCAA+GGG | 0.740057 | tig0044864:+177 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATAAAAACATCACAAA+AGG | - | tig0044864:265-284 | Msa1465050:intergenic | 15.0% |
| !! | TGAGAATAATAAAACATTAA+AGG | - | tig0044864:953-972 | Msa1465050:intergenic | 15.0% |
| !! | ATTAATAAAAACATCACAAA+AGG | - | tig0044864:265-284 | Msa1465050:intergenic | 15.0% |
| !! | TGAGAATAATAAAACATTAA+AGG | - | tig0044864:953-972 | Msa1465050:intergenic | 15.0% |
| !! | AAATTGTCAGCATTAAATTA+AGG | - | tig0044864:341-360 | Msa1465050:intergenic | 20.0% |
| !! | AATAGATATATGAAAGAAGA+GGG | - | tig0044864:667-686 | Msa1465050:intergenic | 20.0% |
| !! | TGGAAATAAACAACATTAAA+AGG | - | tig0044864:880-899 | Msa1465050:intergenic | 20.0% |
| !! | AGGATATATTATATTGAACT+CGG | - | tig0044864:933-952 | Msa1465050:intergenic | 20.0% |
| !!! | AATGTTTTATTATTCTCAAG+CGG | + | tig0044864:955-974 | Msa1465050:intron | 20.0% |
| !! | TCAATTAGTGAATCAAATAT+AGG | - | tig0044864:1032-1051 | Msa1465050:intergenic | 20.0% |
| !! | TATATTTGATTCACTAATTG+AGG | + | tig0044864:1031-1050 | Msa1465050:intron | 20.0% |
| !! | AAAAACTTAAATGAAACTAG+TGG | - | tig0044864:1084-1103 | Msa1465050:intergenic | 20.0% |
| !! | AATTAGAGTTTGATTCTTTA+AGG | - | tig0044864:1275-1294 | Msa1465050:intergenic | 20.0% |
| !!! | TTTGATTTACTTTCACATTA+GGG | - | tig0044864:1735-1754 | Msa1465050:intergenic | 20.0% |
| !!! | TTTTGATTTACTTTCACATT+AGG | - | tig0044864:1736-1755 | Msa1465050:intergenic | 20.0% |
| !! | TGAAAGTAAATCAAAATGAA+GGG | + | tig0044864:1740-1759 | Msa1465050:three_prime_UTR | 20.0% |
| !! | AAATTGTCAGCATTAAATTA+AGG | - | tig0044864:341-360 | Msa1465050:intergenic | 20.0% |
| !! | AATAGATATATGAAAGAAGA+GGG | - | tig0044864:667-686 | Msa1465050:intergenic | 20.0% |
| !! | TGGAAATAAACAACATTAAA+AGG | - | tig0044864:880-899 | Msa1465050:intergenic | 20.0% |
| !! | AGGATATATTATATTGAACT+CGG | - | tig0044864:933-952 | Msa1465050:intergenic | 20.0% |
| !!! | AATGTTTTATTATTCTCAAG+CGG | + | tig0044864:955-974 | Msa1465050:intron | 20.0% |
| !! | TCAATTAGTGAATCAAATAT+AGG | - | tig0044864:1032-1051 | Msa1465050:intergenic | 20.0% |
| !! | TATATTTGATTCACTAATTG+AGG | + | tig0044864:1031-1050 | Msa1465050:intron | 20.0% |
| !! | AAAAACTTAAATGAAACTAG+TGG | - | tig0044864:1084-1103 | Msa1465050:intergenic | 20.0% |
| !! | AATTAGAGTTTGATTCTTTA+AGG | - | tig0044864:1275-1294 | Msa1465050:intergenic | 20.0% |
| !!! | TTTGATTTACTTTCACATTA+GGG | - | tig0044864:1735-1754 | Msa1465050:intergenic | 20.0% |
| !!! | TTTTGATTTACTTTCACATT+AGG | - | tig0044864:1736-1755 | Msa1465050:intergenic | 20.0% |
| !! | TGAAAGTAAATCAAAATGAA+GGG | + | tig0044864:1740-1759 | Msa1465050:three_prime_UTR | 20.0% |
| ! | ACCTCATATTAAAAGCTAAA+TGG | + | tig0044864:288-307 | Msa1465050:intron | 25.0% |
| !!! | TCCATTTAGCTTTTAATATG+AGG | - | tig0044864:292-311 | Msa1465050:intergenic | 25.0% |
| ! | AATGGAAAAATGTTGTGAAT+TGG | + | tig0044864:306-325 | Msa1465050:intron | 25.0% |
| ! | AGTGTATGGAAATATAGTTA+AGG | - | tig0044864:367-386 | Msa1465050:intergenic | 25.0% |
| ! | ACTTAATAAACGTGATTGTT+CGG | - | tig0044864:431-450 | Msa1465050:intergenic | 25.0% |
| ! | CAATAGATATATGAAAGAAG+AGG | - | tig0044864:668-687 | Msa1465050:intergenic | 25.0% |
| !! | AGATACATTTTACACATACT+TGG | - | tig0044864:1108-1127 | Msa1465050:intergenic | 25.0% |
| ! | TAAGTCATGAAAATTAACAC+AGG | - | tig0044864:1139-1158 | Msa1465050:intergenic | 25.0% |
| !! | TGTGTTAATTTTCATGACTT+AGG | + | tig0044864:1138-1157 | Msa1465050:intron | 25.0% |
| ! | GTGAAAGTAAATCAAAATGA+AGG | + | tig0044864:1739-1758 | Msa1465050:three_prime_UTR | 25.0% |
| ! | ACCTCATATTAAAAGCTAAA+TGG | + | tig0044864:288-307 | Msa1465050:intron | 25.0% |
| !!! | TCCATTTAGCTTTTAATATG+AGG | - | tig0044864:292-311 | Msa1465050:intergenic | 25.0% |
| ! | AATGGAAAAATGTTGTGAAT+TGG | + | tig0044864:306-325 | Msa1465050:intron | 25.0% |
| ! | AGTGTATGGAAATATAGTTA+AGG | - | tig0044864:367-386 | Msa1465050:intergenic | 25.0% |
| ! | ACTTAATAAACGTGATTGTT+CGG | - | tig0044864:431-450 | Msa1465050:intergenic | 25.0% |
| ! | CAATAGATATATGAAAGAAG+AGG | - | tig0044864:668-687 | Msa1465050:intergenic | 25.0% |
| !! | AGATACATTTTACACATACT+TGG | - | tig0044864:1108-1127 | Msa1465050:intergenic | 25.0% |
| ! | TAAGTCATGAAAATTAACAC+AGG | - | tig0044864:1139-1158 | Msa1465050:intergenic | 25.0% |
| !! | TGTGTTAATTTTCATGACTT+AGG | + | tig0044864:1138-1157 | Msa1465050:intron | 25.0% |
| ! | GTGAAAGTAAATCAAAATGA+AGG | + | tig0044864:1739-1758 | Msa1465050:three_prime_UTR | 25.0% |
| ! | TGTTACGAAATCGTATTGAT+CGG | + | tig0044864:209-228 | Msa1465050:CDS | 30.0% |
| TTGAGCAAAACCATTATATG+TGG | - | tig0044864:590-609 | Msa1465050:intergenic | 30.0% | |
| GACTTAGAAGCCAAATATAT+TGG | + | tig0044864:811-830 | Msa1465050:intron | 30.0% | |
| ATAACACCAGCCAATATATT+TGG | - | tig0044864:824-843 | Msa1465050:intergenic | 30.0% | |
| !! | TTATTTTTCACCGGAGATTT+CGG | - | tig0044864:1165-1184 | Msa1465050:intergenic | 30.0% |
| !!! | TCATCTTGGTTATTTTTCAC+CGG | - | tig0044864:1174-1193 | Msa1465050:intergenic | 30.0% |
| !! | GATATAGTGTTACTTGATTG+AGG | - | tig0044864:1330-1349 | Msa1465050:intergenic | 30.0% |
| CAGAAATCTGAGTATTAACA+TGG | + | tig0044864:1371-1390 | Msa1465050:CDS | 30.0% | |
| TCAATCATACAGTAAAGGAA+AGG | + | tig0044864:1397-1416 | Msa1465050:CDS | 30.0% | |
| AATAGTAAAGTCACTTCATC+TGG | + | tig0044864:1501-1520 | Msa1465050:CDS | 30.0% | |
| TAACTATTGATAAGCAACAC+TGG | - | tig0044864:1789-1808 | Msa1465050:intergenic | 30.0% | |
| ! | TGTTACGAAATCGTATTGAT+CGG | + | tig0044864:209-228 | Msa1465050:CDS | 30.0% |
| TTGAGCAAAACCATTATATG+TGG | - | tig0044864:590-609 | Msa1465050:intergenic | 30.0% | |
| GACTTAGAAGCCAAATATAT+TGG | + | tig0044864:811-830 | Msa1465050:intron | 30.0% | |
| ATAACACCAGCCAATATATT+TGG | - | tig0044864:824-843 | Msa1465050:intergenic | 30.0% | |
| !! | TTATTTTTCACCGGAGATTT+CGG | - | tig0044864:1165-1184 | Msa1465050:intergenic | 30.0% |
| !!! | TCATCTTGGTTATTTTTCAC+CGG | - | tig0044864:1174-1193 | Msa1465050:intergenic | 30.0% |
| !! | GATATAGTGTTACTTGATTG+AGG | - | tig0044864:1330-1349 | Msa1465050:intergenic | 30.0% |
| CAGAAATCTGAGTATTAACA+TGG | + | tig0044864:1371-1390 | Msa1465050:CDS | 30.0% | |
| TCAATCATACAGTAAAGGAA+AGG | + | tig0044864:1397-1416 | Msa1465050:CDS | 30.0% | |
| AATAGTAAAGTCACTTCATC+TGG | + | tig0044864:1501-1520 | Msa1465050:CDS | 30.0% | |
| TAACTATTGATAAGCAACAC+TGG | - | tig0044864:1789-1808 | Msa1465050:intergenic | 30.0% | |
| ! | GTTACGAAATCGTATTGATC+GGG | + | tig0044864:210-229 | Msa1465050:CDS | 35.0% |
| TCCAAAAGTAATTCCTGAAC+TGG | + | tig0044864:456-475 | Msa1465050:CDS | 35.0% | |
| ! | ACCAGTTCAGGAATTACTTT+TGG | - | tig0044864:460-479 | Msa1465050:intergenic | 35.0% |
| ! | CTCAAGCTTATCTTTTCTTG+AGG | - | tig0044864:509-528 | Msa1465050:intergenic | 35.0% |
| AGAGTTACAATTCTCTCCAA+TGG | - | tig0044864:554-573 | Msa1465050:intergenic | 35.0% | |
| ATTGGAGAGAATTGTAACTC+TGG | + | tig0044864:553-572 | Msa1465050:CDS | 35.0% | |
| !! | TAATGGTTTTGCTCAATGTC+TGG | + | tig0044864:594-613 | Msa1465050:CDS | 35.0% |
| GATAAGAGAACAGATGTTGT+AGG | + | tig0044864:616-635 | Msa1465050:CDS | 35.0% | |
| ! | AAAGAAGAGGGAGTATAGAT+AGG | - | tig0044864:655-674 | Msa1465050:intergenic | 35.0% |
| ! | CTTTTCTTCACATTGTCATG+CGG | + | tig0044864:751-770 | Msa1465050:intron | 35.0% |
| TAGAAGCCAAATATATTGGC+TGG | + | tig0044864:815-834 | Msa1465050:intron | 35.0% | |
| ! | TTTGATTCTTTAAGGAGTGC+AGG | - | tig0044864:1267-1286 | Msa1465050:intergenic | 35.0% |
| ACCTTAAACCCAGAAAAATG+TGG | + | tig0044864:1300-1319 | Msa1465050:CDS | 35.0% | |
| GGATGTCAATCATACAGTAA+AGG | + | tig0044864:1392-1411 | Msa1465050:CDS | 35.0% | |
| TTTAAGTGACAGTGATGAAG+AGG | + | tig0044864:1473-1492 | Msa1465050:CDS | 35.0% | |
| CAGTACCAAATAGGAATATC+AGG | - | tig0044864:1546-1565 | Msa1465050:intergenic | 35.0% | |
| TATTCCTATTTGGTACTGCT+CGG | + | tig0044864:1548-1567 | Msa1465050:CDS | 35.0% | |
| TTGAGTACAGTCATTGGAAA+AGG | - | tig0044864:1600-1619 | Msa1465050:intergenic | 35.0% | |
| ATTTCCAACAAGCAGCTATT+TGG | - | tig0044864:1832-1851 | Msa1465050:intergenic | 35.0% | |
| CATCTCTCAGAATTTGTCAA+AGG | - | tig0044864:1892-1911 | Msa1465050:intergenic | 35.0% | |
| ! | CTTTGACAAATTCTGAGAGA+TGG | + | tig0044864:1890-1909 | Msa1465050:three_prime_UTR | 35.0% |
| ! | GTTACGAAATCGTATTGATC+GGG | + | tig0044864:210-229 | Msa1465050:CDS | 35.0% |
| TCCAAAAGTAATTCCTGAAC+TGG | + | tig0044864:456-475 | Msa1465050:CDS | 35.0% | |
| ! | ACCAGTTCAGGAATTACTTT+TGG | - | tig0044864:460-479 | Msa1465050:intergenic | 35.0% |
| ! | CTCAAGCTTATCTTTTCTTG+AGG | - | tig0044864:509-528 | Msa1465050:intergenic | 35.0% |
| AGAGTTACAATTCTCTCCAA+TGG | - | tig0044864:554-573 | Msa1465050:intergenic | 35.0% | |
| ATTGGAGAGAATTGTAACTC+TGG | + | tig0044864:553-572 | Msa1465050:CDS | 35.0% | |
| !! | TAATGGTTTTGCTCAATGTC+TGG | + | tig0044864:594-613 | Msa1465050:CDS | 35.0% |
| GATAAGAGAACAGATGTTGT+AGG | + | tig0044864:616-635 | Msa1465050:CDS | 35.0% | |
| ! | AAAGAAGAGGGAGTATAGAT+AGG | - | tig0044864:655-674 | Msa1465050:intergenic | 35.0% |
| ! | CTTTTCTTCACATTGTCATG+CGG | + | tig0044864:751-770 | Msa1465050:intron | 35.0% |
| TAGAAGCCAAATATATTGGC+TGG | + | tig0044864:815-834 | Msa1465050:intron | 35.0% | |
| ! | TTTGATTCTTTAAGGAGTGC+AGG | - | tig0044864:1267-1286 | Msa1465050:intergenic | 35.0% |
| ACCTTAAACCCAGAAAAATG+TGG | + | tig0044864:1300-1319 | Msa1465050:CDS | 35.0% | |
| GGATGTCAATCATACAGTAA+AGG | + | tig0044864:1392-1411 | Msa1465050:CDS | 35.0% | |
| TTTAAGTGACAGTGATGAAG+AGG | + | tig0044864:1473-1492 | Msa1465050:CDS | 35.0% | |
| CAGTACCAAATAGGAATATC+AGG | - | tig0044864:1546-1565 | Msa1465050:intergenic | 35.0% | |
| TATTCCTATTTGGTACTGCT+CGG | + | tig0044864:1548-1567 | Msa1465050:CDS | 35.0% | |
| TTGAGTACAGTCATTGGAAA+AGG | - | tig0044864:1600-1619 | Msa1465050:intergenic | 35.0% | |
| ATTTCCAACAAGCAGCTATT+TGG | - | tig0044864:1832-1851 | Msa1465050:intergenic | 35.0% | |
| CATCTCTCAGAATTTGTCAA+AGG | - | tig0044864:1892-1911 | Msa1465050:intergenic | 35.0% | |
| ! | CTTTGACAAATTCTGAGAGA+TGG | + | tig0044864:1890-1909 | Msa1465050:three_prime_UTR | 35.0% |
| TATTGATCGGGCCAATGAAA+AGG | + | tig0044864:222-241 | Msa1465050:CDS | 40.0% | |
| ATTGATCGGGCCAATGAAAA+GGG | + | tig0044864:223-242 | Msa1465050:CDS | 40.0% | |
| AGATTGGTATCAACCAGTTC+AGG | - | tig0044864:472-491 | Msa1465050:intergenic | 40.0% | |
| GGAATCTTCTAGTGACAGAT+TGG | - | tig0044864:488-507 | Msa1465050:intergenic | 40.0% | |
| GAATTGCAAGAAGTAGCCAT+TGG | + | tig0044864:535-554 | Msa1465050:CDS | 40.0% | |
| GGACAGTACTCCACATATAA+TGG | + | tig0044864:577-596 | Msa1465050:CDS | 40.0% | |
| CAAGAAGCAACACATGAATG+GGG | - | tig0044864:850-869 | Msa1465050:intergenic | 40.0% | |
| GCAAGAAGCAACACATGAAT+GGG | - | tig0044864:851-870 | Msa1465050:intergenic | 40.0% | |
| AGCAAGAAGCAACACATGAA+TGG | - | tig0044864:852-871 | Msa1465050:intergenic | 40.0% | |
| TTGAACTCGGACTGTGATAT+CGG | - | tig0044864:920-939 | Msa1465050:intergenic | 40.0% | |
| GGTAGATAATTGCTCAACAG+TGG | - | tig0044864:1211-1230 | Msa1465050:intergenic | 40.0% | |
| GTTGAGCAATTATCTACCCT+TGG | + | tig0044864:1213-1232 | Msa1465050:CDS | 40.0% | |
| !! | TTTGTCTTCAGAAGCACCAA+GGG | - | tig0044864:1232-1251 | Msa1465050:intergenic | 40.0% |
| ! | GCTTCTGAAGACAAAGATGA+TGG | + | tig0044864:1237-1256 | Msa1465050:CDS | 40.0% |
| ! | GCCACATTTTTCTGGGTTTA+AGG | - | tig0044864:1304-1323 | Msa1465050:intergenic | 40.0% |
| TACTGTTTCGGATCCCATTA+AGG | + | tig0044864:1428-1447 | Msa1465050:CDS | 40.0% | |
| TCATTGACGATCGCCTTAAT+GGG | - | tig0044864:1444-1463 | Msa1465050:intergenic | 40.0% | |
| ATCATTGACGATCGCCTTAA+TGG | - | tig0044864:1445-1464 | Msa1465050:intergenic | 40.0% | |
| TTCATCTGGAAGAAAGAGAG+TGG | + | tig0044864:1515-1534 | Msa1465050:CDS | 40.0% | |
| AGGGTCCTGATATTCCTATT+TGG | + | tig0044864:1538-1557 | Msa1465050:CDS | 40.0% | |
| ATTCCTATTTGGTACTGCTC+GGG | + | tig0044864:1549-1568 | Msa1465050:CDS | 40.0% | |
| CAGTGTTTGAGTACAGTCAT+TGG | - | tig0044864:1606-1625 | Msa1465050:intergenic | 40.0% | |
| CAATGACTGTACTCAAACAC+TGG | + | tig0044864:1604-1623 | Msa1465050:CDS | 40.0% | |
| ACTCAAACACTGGAGTGAAT+TGG | + | tig0044864:1614-1633 | Msa1465050:CDS | 40.0% | |
| ATATGCTCCCTTAGACTTCA+AGG | + | tig0044864:1644-1663 | Msa1465050:CDS | 40.0% | |
| TTCCAGACCTTGAAGTCTAA+GGG | - | tig0044864:1654-1673 | Msa1465050:intergenic | 40.0% | |
| ! | AAAGAGAGGCAATGCTTTTG+AGG | + | tig0044864:1688-1707 | Msa1465050:CDS | 40.0% |
| ! | AAGAGAGGCAATGCTTTTGA+GGG | + | tig0044864:1689-1708 | Msa1465050:CDS | 40.0% |
| TTCACCAAATAGCTGCTTGT+TGG | + | tig0044864:1825-1844 | Msa1465050:three_prime_UTR | 40.0% | |
| TATTGATCGGGCCAATGAAA+AGG | + | tig0044864:222-241 | Msa1465050:CDS | 40.0% | |
| ATTGATCGGGCCAATGAAAA+GGG | + | tig0044864:223-242 | Msa1465050:CDS | 40.0% | |
| AGATTGGTATCAACCAGTTC+AGG | - | tig0044864:472-491 | Msa1465050:intergenic | 40.0% | |
| GGAATCTTCTAGTGACAGAT+TGG | - | tig0044864:488-507 | Msa1465050:intergenic | 40.0% | |
| GAATTGCAAGAAGTAGCCAT+TGG | + | tig0044864:535-554 | Msa1465050:CDS | 40.0% | |
| GGACAGTACTCCACATATAA+TGG | + | tig0044864:577-596 | Msa1465050:CDS | 40.0% | |
| CAAGAAGCAACACATGAATG+GGG | - | tig0044864:850-869 | Msa1465050:intergenic | 40.0% | |
| GCAAGAAGCAACACATGAAT+GGG | - | tig0044864:851-870 | Msa1465050:intergenic | 40.0% | |
| AGCAAGAAGCAACACATGAA+TGG | - | tig0044864:852-871 | Msa1465050:intergenic | 40.0% | |
| TTGAACTCGGACTGTGATAT+CGG | - | tig0044864:920-939 | Msa1465050:intergenic | 40.0% | |
| GGTAGATAATTGCTCAACAG+TGG | - | tig0044864:1211-1230 | Msa1465050:intergenic | 40.0% | |
| GTTGAGCAATTATCTACCCT+TGG | + | tig0044864:1213-1232 | Msa1465050:CDS | 40.0% | |
| !! | TTTGTCTTCAGAAGCACCAA+GGG | - | tig0044864:1232-1251 | Msa1465050:intergenic | 40.0% |
| ! | GCTTCTGAAGACAAAGATGA+TGG | + | tig0044864:1237-1256 | Msa1465050:CDS | 40.0% |
| ! | GCCACATTTTTCTGGGTTTA+AGG | - | tig0044864:1304-1323 | Msa1465050:intergenic | 40.0% |
| TACTGTTTCGGATCCCATTA+AGG | + | tig0044864:1428-1447 | Msa1465050:CDS | 40.0% | |
| TCATTGACGATCGCCTTAAT+GGG | - | tig0044864:1444-1463 | Msa1465050:intergenic | 40.0% | |
| ATCATTGACGATCGCCTTAA+TGG | - | tig0044864:1445-1464 | Msa1465050:intergenic | 40.0% | |
| TTCATCTGGAAGAAAGAGAG+TGG | + | tig0044864:1515-1534 | Msa1465050:CDS | 40.0% | |
| AGGGTCCTGATATTCCTATT+TGG | + | tig0044864:1538-1557 | Msa1465050:CDS | 40.0% | |
| ATTCCTATTTGGTACTGCTC+GGG | + | tig0044864:1549-1568 | Msa1465050:CDS | 40.0% | |
| CAGTGTTTGAGTACAGTCAT+TGG | - | tig0044864:1606-1625 | Msa1465050:intergenic | 40.0% | |
| CAATGACTGTACTCAAACAC+TGG | + | tig0044864:1604-1623 | Msa1465050:CDS | 40.0% | |
| ACTCAAACACTGGAGTGAAT+TGG | + | tig0044864:1614-1633 | Msa1465050:CDS | 40.0% | |
| ATATGCTCCCTTAGACTTCA+AGG | + | tig0044864:1644-1663 | Msa1465050:CDS | 40.0% | |
| TTCCAGACCTTGAAGTCTAA+GGG | - | tig0044864:1654-1673 | Msa1465050:intergenic | 40.0% | |
| ! | AAAGAGAGGCAATGCTTTTG+AGG | + | tig0044864:1688-1707 | Msa1465050:CDS | 40.0% |
| ! | AAGAGAGGCAATGCTTTTGA+GGG | + | tig0044864:1689-1708 | Msa1465050:CDS | 40.0% |
| TTCACCAAATAGCTGCTTGT+TGG | + | tig0044864:1825-1844 | Msa1465050:three_prime_UTR | 40.0% | |
| ! | TCTCCTCCATCCCTTTTCAT+TGG | - | tig0044864:236-255 | Msa1465050:intergenic | 45.0% |
| CCATGTACTGAGCAAGTGTA+TGG | - | tig0044864:381-400 | Msa1465050:intergenic | 45.0% | |
| CCATACACTTGCTCAGTACA+TGG | + | tig0044864:378-397 | Msa1465050:intron | 45.0% | |
| GGAGAGAATTGTAACTCTGG+AGG | + | tig0044864:556-575 | Msa1465050:CDS | 45.0% | |
| ACAGATGTTGTAGGTCTGTC+AGG | + | tig0044864:625-644 | Msa1465050:intron | 45.0% | |
| ACTGTGATATCGGAGTACGT+CGG | - | tig0044864:910-929 | Msa1465050:intergenic | 45.0% | |
| TGACTTAGGTCCGAAATCTC+CGG | + | tig0044864:1152-1171 | Msa1465050:intron | 45.0% | |
| GATAATTGCTCAACAGTGGC+AGG | - | tig0044864:1207-1226 | Msa1465050:intergenic | 45.0% | |
| !! | CTTTGTCTTCAGAAGCACCA+AGG | - | tig0044864:1233-1252 | Msa1465050:intergenic | 45.0% |
| ! | GAGGCAAGCCACATTTTTCT+GGG | - | tig0044864:1311-1330 | Msa1465050:intergenic | 45.0% |
| ! | TGAGGCAAGCCACATTTTTC+TGG | - | tig0044864:1312-1331 | Msa1465050:intergenic | 45.0% |
| ! | AAGGCGAAGCGTTACTGTTT+CGG | + | tig0044864:1416-1435 | Msa1465050:CDS | 45.0% |
| ATCTGGAAGAAAGAGAGTGG+AGG | + | tig0044864:1518-1537 | Msa1465050:CDS | 45.0% | |
| TCTGGAAGAAAGAGAGTGGA+GGG | + | tig0044864:1519-1538 | Msa1465050:CDS | 45.0% | |
| ATACCCGAGCAGTACCAAAT+AGG | - | tig0044864:1555-1574 | Msa1465050:intergenic | 45.0% | |
| ! | GAAGTCTAAGGGAGCATATG+TGG | - | tig0044864:1643-1662 | Msa1465050:intergenic | 45.0% |
| CTTCCAGACCTTGAAGTCTA+AGG | - | tig0044864:1655-1674 | Msa1465050:intergenic | 45.0% | |
| AGACTTCAAGGTCTGGAAGA+CGG | + | tig0044864:1656-1675 | Msa1465050:CDS | 45.0% | |
| ! | TCTCCTCCATCCCTTTTCAT+TGG | - | tig0044864:236-255 | Msa1465050:intergenic | 45.0% |
| CCATGTACTGAGCAAGTGTA+TGG | - | tig0044864:381-400 | Msa1465050:intergenic | 45.0% | |
| CCATACACTTGCTCAGTACA+TGG | + | tig0044864:378-397 | Msa1465050:intron | 45.0% | |
| GGAGAGAATTGTAACTCTGG+AGG | + | tig0044864:556-575 | Msa1465050:CDS | 45.0% | |
| ACAGATGTTGTAGGTCTGTC+AGG | + | tig0044864:625-644 | Msa1465050:intron | 45.0% | |
| ACTGTGATATCGGAGTACGT+CGG | - | tig0044864:910-929 | Msa1465050:intergenic | 45.0% | |
| TGACTTAGGTCCGAAATCTC+CGG | + | tig0044864:1152-1171 | Msa1465050:intron | 45.0% | |
| GATAATTGCTCAACAGTGGC+AGG | - | tig0044864:1207-1226 | Msa1465050:intergenic | 45.0% | |
| !! | CTTTGTCTTCAGAAGCACCA+AGG | - | tig0044864:1233-1252 | Msa1465050:intergenic | 45.0% |
| ! | GAGGCAAGCCACATTTTTCT+GGG | - | tig0044864:1311-1330 | Msa1465050:intergenic | 45.0% |
| ! | TGAGGCAAGCCACATTTTTC+TGG | - | tig0044864:1312-1331 | Msa1465050:intergenic | 45.0% |
| ! | AAGGCGAAGCGTTACTGTTT+CGG | + | tig0044864:1416-1435 | Msa1465050:CDS | 45.0% |
| ATCTGGAAGAAAGAGAGTGG+AGG | + | tig0044864:1518-1537 | Msa1465050:CDS | 45.0% | |
| TCTGGAAGAAAGAGAGTGGA+GGG | + | tig0044864:1519-1538 | Msa1465050:CDS | 45.0% | |
| ATACCCGAGCAGTACCAAAT+AGG | - | tig0044864:1555-1574 | Msa1465050:intergenic | 45.0% | |
| ! | GAAGTCTAAGGGAGCATATG+TGG | - | tig0044864:1643-1662 | Msa1465050:intergenic | 45.0% |
| CTTCCAGACCTTGAAGTCTA+AGG | - | tig0044864:1655-1674 | Msa1465050:intergenic | 45.0% | |
| AGACTTCAAGGTCTGGAAGA+CGG | + | tig0044864:1656-1675 | Msa1465050:CDS | 45.0% | |
| ATCGGGCCAATGAAAAGGGA+TGG | + | tig0044864:227-246 | Msa1465050:CDS | 50.0% | |
| TGATATCGGAGTACGTCGGT+AGG | - | tig0044864:906-925 | Msa1465050:intergenic | 50.0% | |
| CAGGAAAGGCTGGATCATCT+TGG | - | tig0044864:1188-1207 | Msa1465050:intergenic | 50.0% | |
| TTGCTCAACAGTGGCAGGAA+AGG | - | tig0044864:1202-1221 | Msa1465050:intergenic | 50.0% | |
| ATTCGTGGCTGTGGAACAAG+AGG | + | tig0044864:1573-1592 | Msa1465050:CDS | 50.0% | |
| TTCGTGGCTGTGGAACAAGA+GGG | + | tig0044864:1574-1593 | Msa1465050:CDS | 50.0% | |
| CTCCCTTAGACTTCAAGGTC+TGG | + | tig0044864:1649-1668 | Msa1465050:CDS | 50.0% | |
| GACTTCAAGGTCTGGAAGAC+GGG | + | tig0044864:1657-1676 | Msa1465050:CDS | 50.0% | |
| ATCGGGCCAATGAAAAGGGA+TGG | + | tig0044864:227-246 | Msa1465050:CDS | 50.0% | |
| TGATATCGGAGTACGTCGGT+AGG | - | tig0044864:906-925 | Msa1465050:intergenic | 50.0% | |
| CAGGAAAGGCTGGATCATCT+TGG | - | tig0044864:1188-1207 | Msa1465050:intergenic | 50.0% | |
| TTGCTCAACAGTGGCAGGAA+AGG | - | tig0044864:1202-1221 | Msa1465050:intergenic | 50.0% | |
| ATTCGTGGCTGTGGAACAAG+AGG | + | tig0044864:1573-1592 | Msa1465050:CDS | 50.0% | |
| TTCGTGGCTGTGGAACAAGA+GGG | + | tig0044864:1574-1593 | Msa1465050:CDS | 50.0% | |
| CTCCCTTAGACTTCAAGGTC+TGG | + | tig0044864:1649-1668 | Msa1465050:CDS | 50.0% | |
| GACTTCAAGGTCTGGAAGAC+GGG | + | tig0044864:1657-1676 | Msa1465050:CDS | 50.0% | |
| GGGCCAATGAAAAGGGATGG+AGG | + | tig0044864:230-249 | Msa1465050:CDS | 55.0% | |
| CGGAGTACGTCGGTAGGAAA+TGG | - | tig0044864:900-919 | Msa1465050:intergenic | 55.0% | |
| TCAACAGTGGCAGGAAAGGC+TGG | - | tig0044864:1198-1217 | Msa1465050:intergenic | 55.0% | |
| TGGTACTGCTCGGGTATTCG+TGG | + | tig0044864:1558-1577 | Msa1465050:CDS | 55.0% | |
| GGGCCAATGAAAAGGGATGG+AGG | + | tig0044864:230-249 | Msa1465050:CDS | 55.0% | |
| CGGAGTACGTCGGTAGGAAA+TGG | - | tig0044864:900-919 | Msa1465050:intergenic | 55.0% | |
| TCAACAGTGGCAGGAAAGGC+TGG | - | tig0044864:1198-1217 | Msa1465050:intergenic | 55.0% | |
| TGGTACTGCTCGGGTATTCG+TGG | + | tig0044864:1558-1577 | Msa1465050:CDS | 55.0% | |
| TGCTCGGGTATTCGTGGCTG+TGG | + | tig0044864:1564-1583 | Msa1465050:CDS | 60.0% | |
| GACGGGCGAGAGTGAAAGAG+AGG | + | tig0044864:1674-1693 | Msa1465050:CDS | 60.0% | |
| TGCTCGGGTATTCGTGGCTG+TGG | + | tig0044864:1564-1583 | Msa1465050:CDS | 60.0% | |
| GACGGGCGAGAGTGAAAGAG+AGG | + | tig0044864:1674-1693 | Msa1465050:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0044864 | gene | 178 | 1963 | 178 | ID=Msa1465050;Name=Msa1465050 |
| tig0044864 | mRNA | 178 | 1963 | 178 | ID=Msa1465050-mRNA-1;Parent=Msa1465050;Name=Msa1465050-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.66|1|0.5|0.33|3|226|303 |
| tig0044864 | exon | 178 | 257 | 178 | ID=Msa1465050-mRNA-1:exon:24668;Parent=Msa1465050-mRNA-1 |
| tig0044864 | exon | 384 | 637 | 384 | ID=Msa1465050-mRNA-1:exon:24669;Parent=Msa1465050-mRNA-1 |
| tig0044864 | exon | 1160 | 1963 | 1160 | ID=Msa1465050-mRNA-1:exon:24670;Parent=Msa1465050-mRNA-1 |
| tig0044864 | CDS | 178 | 257 | 178 | ID=Msa1465050-mRNA-1:cds;Parent=Msa1465050-mRNA-1 |
| tig0044864 | CDS | 384 | 637 | 384 | ID=Msa1465050-mRNA-1:cds;Parent=Msa1465050-mRNA-1 |
| tig0044864 | CDS | 1160 | 1737 | 1160 | ID=Msa1465050-mRNA-1:cds;Parent=Msa1465050-mRNA-1 |
| tig0044864 | three_prime_UTR | 1738 | 1963 | 1738 | ID=Msa1465050-mRNA-1:three_prime_utr;Parent=Msa1465050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
