AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0690150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0690150 MtrunA17_Chr4g0038621 100.000 71 0 0 1 71 1 71 1.29e-49 150
Msa0690150 MtrunA17_Chr5g0413401 97.183 71 2 0 1 71 1 71 3.48e-48 146
Msa0690150 MtrunA17_Chr5g0413391 74.576 59 15 0 13 71 38 96 4.80e-29 99.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0690150 AT1G61700.1 87.324 71 9 0 1 71 1 71 2.76e-44 137
Msa0690150 AT1G11475.1 88.732 71 8 0 1 71 1 71 9.87e-44 135

Find 34 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCGGAACGAAAAGTGTTTC+AGG 0.227287 4_4:+57591496 None:intergenic
CTGCTTGGAAAACTATTTAA+AGG 0.236886 4_4:+57589440 None:intergenic
AAACAAATGGGACTCTTATC+TGG 0.263347 4_4:-57591183 Msa0690150:CDS
GTCTGGTTCGGTATTGTTGC+AGG 0.287322 4_4:-57589669 Msa0690150:CDS
CACTGACCCTTCAGTGTAAT+CGG 0.370692 4_4:+57591148 None:intergenic
GGTAATCAGTAGTTCCTAAC+TGG 0.371023 4_4:+57589494 None:intergenic
ATTAGGTCATTGGAAACAAA+TGG 0.395280 4_4:-57591196 Msa0690150:intron
CAGTTATAGCTAGTAAAGTT+AGG 0.411822 4_4:-57589420 Msa0690150:three_prime_UTR
GCAACGTAACCGACATATCT+TGG 0.430955 4_4:+57589473 None:intergenic
GGAGAAGGCTGAAGCCAGTT+AGG 0.431342 4_4:-57589508 Msa0690150:exon
TGCACTGGATGCGTTGGGTC+TGG 0.462184 4_4:-57589686 Msa0690150:CDS
TGGAAAACTATTTAAAGGAC+AGG 0.467009 4_4:+57589445 None:intergenic
CTCAAGAATTTGTCTTATGT+CGG 0.476787 4_4:+57591478 None:intergenic
TGGATGCGTTGGGTCTGGTT+CGG 0.497757 4_4:-57589681 Msa0690150:CDS
CCCGTTCGTTGTTTCACTTG+TGG 0.498971 4_4:-57591398 Msa0690150:CDS
CTTTACTAGCTATAACTGCT+TGG 0.514576 4_4:+57589425 None:intergenic
TATGGATTGCAGAGATGCAC+TGG 0.517566 4_4:-57589701 Msa0690150:intron
CTTCAAGCCGATTACACTGA+AGG 0.518538 4_4:-57591155 Msa0690150:CDS
CCACAAGTGAAACAACGAAC+GGG 0.522867 4_4:+57591398 None:intergenic
CAGAGATGCACTGGATGCGT+TGG 0.526584 4_4:-57589692 Msa0690150:CDS
TCGTTGTTTCACTTGTGGAA+AGG 0.534289 4_4:-57591393 Msa0690150:intron
GTGTCTTGAGCGGAGAAACA+AGG 0.540566 4_4:-57591442 Msa0690150:five_prime_UTR
TTAGGTCATTGGAAACAAAT+GGG 0.545252 4_4:-57591195 Msa0690150:intron
TTCAAGCCGATTACACTGAA+GGG 0.552047 4_4:-57591154 Msa0690150:intron
AGAGATGCACTGGATGCGTT+GGG 0.559881 4_4:-57589691 Msa0690150:CDS
TTTGCTTGCAGCTATGGAGA+AGG 0.578496 4_4:-57589523 Msa0690150:intron
CGACATAAGACAAATTCTTG+AGG 0.597109 4_4:-57591477 Msa0690150:five_prime_UTR
TCCACAAGTGAAACAACGAA+CGG 0.616533 4_4:+57591397 None:intergenic
TACTGATTACCAAGATATGT+CGG 0.624490 4_4:-57589482 Msa0690150:three_prime_UTR
TTATAGCTAGTAAAGTTAGG+AGG 0.639825 4_4:-57589417 Msa0690150:three_prime_UTR
GTTTCTCAATGAGATCAACA+TGG 0.660440 4_4:+57589632 None:intergenic
GGAAAACTATTTAAAGGACA+GGG 0.664065 4_4:+57589446 None:intergenic
TTTCTCAATGAGATCAACAT+GGG 0.669562 4_4:+57589633 None:intergenic
AGTTCTAGCAGTGTCTTGAG+CGG 0.669580 4_4:-57591452 Msa0690150:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTTCTTAAAACCTTA+GGG - chr4_4:57589814-57589833 Msa0690150:intron 15.0%
!! AATTAAAAACTACAATTTAC+AGG + chr4_4:57589947-57589966 None:intergenic 15.0%
!!! CAATAGTTTATTTTTTGAAA+CGG + chr4_4:57590748-57590767 None:intergenic 15.0%
!!! AAATTTTTCTTAAAACCTTA+GGG - chr4_4:57589814-57589833 Msa0690150:intron 15.0%
!! AATTAAAAACTACAATTTAC+AGG + chr4_4:57589947-57589966 None:intergenic 15.0%
!!! CAATAGTTTATTTTTTGAAA+CGG + chr4_4:57590748-57590767 None:intergenic 15.0%
!!! TTAAACGCTTTTCAAATTTA+GGG - chr4_4:57589499-57589518 Msa0690150:exon 20.0%
!! ACGAAAATAAACAAGTATTA+GGG + chr4_4:57589754-57589773 None:intergenic 20.0%
!! TACGAAAATAAACAAGTATT+AGG + chr4_4:57589755-57589774 None:intergenic 20.0%
!!! GAAATTTTTCTTAAAACCTT+AGG - chr4_4:57589813-57589832 Msa0690150:intron 20.0%
!!! TTTTAAGGTAAAATATCAAG+TGG + chr4_4:57589879-57589898 None:intergenic 20.0%
!!! TTACACAAAGTAACATTTTA+AGG + chr4_4:57589894-57589913 None:intergenic 20.0%
!!! AATTACTGTTGTTGTTTAAT+TGG - chr4_4:57590051-57590070 Msa0690150:intron 20.0%
!!! TGATCAAATTTTTAATGACA+AGG - chr4_4:57590203-57590222 Msa0690150:intron 20.0%
!! CAATGATTAAATTTATGTCT+TGG - chr4_4:57590266-57590285 Msa0690150:intron 20.0%
!! CGTTTCAAAAAATAAACTAT+TGG - chr4_4:57590746-57590765 Msa0690150:intron 20.0%
!! AAGAGATCTAGTATATTTAA+GGG + chr4_4:57590970-57590989 None:intergenic 20.0%
!! AAAGAGATCTAGTATATTTA+AGG + chr4_4:57590971-57590990 None:intergenic 20.0%
!! AATTTAAACTAATATTTGCC+AGG + chr4_4:57591015-57591034 None:intergenic 20.0%
!! ATTTCGTAGTATTATCATAA+TGG - chr4_4:57591032-57591051 Msa0690150:intron 20.0%
!!! TTAAACGCTTTTCAAATTTA+GGG - chr4_4:57589499-57589518 Msa0690150:exon 20.0%
!! ACGAAAATAAACAAGTATTA+GGG + chr4_4:57589754-57589773 None:intergenic 20.0%
!! TACGAAAATAAACAAGTATT+AGG + chr4_4:57589755-57589774 None:intergenic 20.0%
!!! GAAATTTTTCTTAAAACCTT+AGG - chr4_4:57589813-57589832 Msa0690150:intron 20.0%
!!! TTTTAAGGTAAAATATCAAG+TGG + chr4_4:57589879-57589898 None:intergenic 20.0%
!!! TTACACAAAGTAACATTTTA+AGG + chr4_4:57589894-57589913 None:intergenic 20.0%
!!! AATTACTGTTGTTGTTTAAT+TGG - chr4_4:57590051-57590070 Msa0690150:intron 20.0%
!!! TGATCAAATTTTTAATGACA+AGG - chr4_4:57590203-57590222 Msa0690150:intron 20.0%
!! CAATGATTAAATTTATGTCT+TGG - chr4_4:57590266-57590285 Msa0690150:intron 20.0%
!! CGTTTCAAAAAATAAACTAT+TGG - chr4_4:57590746-57590765 Msa0690150:intron 20.0%
!! AAGAGATCTAGTATATTTAA+GGG + chr4_4:57590970-57590989 None:intergenic 20.0%
!! AAAGAGATCTAGTATATTTA+AGG + chr4_4:57590971-57590990 None:intergenic 20.0%
!! AATTTAAACTAATATTTGCC+AGG + chr4_4:57591015-57591034 None:intergenic 20.0%
!! ATTTCGTAGTATTATCATAA+TGG - chr4_4:57591032-57591051 Msa0690150:intron 20.0%
!! GTTAAACGCTTTTCAAATTT+AGG - chr4_4:57589498-57589517 Msa0690150:exon 25.0%
! GAAATAAGAAGAAAAGAGAA+AGG + chr4_4:57589643-57589662 None:intergenic 25.0%
!! ATTAGCATGATTCTTTTCTT+AGG + chr4_4:57589791-57589810 None:intergenic 25.0%
! AAGAAAAGAATCATGCTAAT+TGG - chr4_4:57589791-57589810 Msa0690150:intron 25.0%
! ACTTTGTGTAATAGATATTG+TGG - chr4_4:57589903-57589922 Msa0690150:intron 25.0%
! TAATAGATATTGTGGAATAG+AGG - chr4_4:57589911-57589930 Msa0690150:intron 25.0%
!!! TGTTGTTGTTTAATTGGTTA+GGG - chr4_4:57590057-57590076 Msa0690150:intron 25.0%
!! TCAAATTTTTAATGACAAGG+TGG - chr4_4:57590206-57590225 Msa0690150:intron 25.0%
! TTAAATTTATGTCTTGGAGA+TGG - chr4_4:57590272-57590291 Msa0690150:intron 25.0%
!! AACCTTGTTTGTATTATGAA+TGG - chr4_4:57590301-57590320 Msa0690150:intron 25.0%
! ATAAAACGAATTGCTTCAAT+AGG - chr4_4:57590331-57590350 Msa0690150:intron 25.0%
! AAAACAAAAGGCCATTAAAA+AGG + chr4_4:57590520-57590539 None:intergenic 25.0%
! TTTGATCCTAATTGTGTATT+CGG - chr4_4:57590666-57590685 Msa0690150:intron 25.0%
!! ATTAACAATTTTATCGCATC+TGG - chr4_4:57590895-57590914 Msa0690150:intron 25.0%
! AGTATTATCATAATGGTGTA+TGG - chr4_4:57591039-57591058 Msa0690150:intron 25.0%
! TGACAACACAGAATAATATA+GGG + chr4_4:57591179-57591198 None:intergenic 25.0%
! TTGACAACACAGAATAATAT+AGG + chr4_4:57591180-57591199 None:intergenic 25.0%
!! TGTCAATTTTCTAATGTCAT+TGG - chr4_4:57591194-57591213 Msa0690150:CDS 25.0%
!! GTCAATTTTCTAATGTCATT+GGG - chr4_4:57591195-57591214 Msa0690150:intron 25.0%
!! GTTAAACGCTTTTCAAATTT+AGG - chr4_4:57589498-57589517 Msa0690150:exon 25.0%
! GAAATAAGAAGAAAAGAGAA+AGG + chr4_4:57589643-57589662 None:intergenic 25.0%
!! ATTAGCATGATTCTTTTCTT+AGG + chr4_4:57589791-57589810 None:intergenic 25.0%
! AAGAAAAGAATCATGCTAAT+TGG - chr4_4:57589791-57589810 Msa0690150:intron 25.0%
! ACTTTGTGTAATAGATATTG+TGG - chr4_4:57589903-57589922 Msa0690150:intron 25.0%
! TAATAGATATTGTGGAATAG+AGG - chr4_4:57589911-57589930 Msa0690150:intron 25.0%
!!! TGTTGTTGTTTAATTGGTTA+GGG - chr4_4:57590057-57590076 Msa0690150:intron 25.0%
!! TCAAATTTTTAATGACAAGG+TGG - chr4_4:57590206-57590225 Msa0690150:intron 25.0%
! TTAAATTTATGTCTTGGAGA+TGG - chr4_4:57590272-57590291 Msa0690150:intron 25.0%
!! AACCTTGTTTGTATTATGAA+TGG - chr4_4:57590301-57590320 Msa0690150:intron 25.0%
! ATAAAACGAATTGCTTCAAT+AGG - chr4_4:57590331-57590350 Msa0690150:intron 25.0%
! AAAACAAAAGGCCATTAAAA+AGG + chr4_4:57590520-57590539 None:intergenic 25.0%
! TTTGATCCTAATTGTGTATT+CGG - chr4_4:57590666-57590685 Msa0690150:intron 25.0%
!! ATTAACAATTTTATCGCATC+TGG - chr4_4:57590895-57590914 Msa0690150:intron 25.0%
! AGTATTATCATAATGGTGTA+TGG - chr4_4:57591039-57591058 Msa0690150:intron 25.0%
! TGACAACACAGAATAATATA+GGG + chr4_4:57591179-57591198 None:intergenic 25.0%
! TTGACAACACAGAATAATAT+AGG + chr4_4:57591180-57591199 None:intergenic 25.0%
!! TGTCAATTTTCTAATGTCAT+TGG - chr4_4:57591194-57591213 Msa0690150:CDS 25.0%
!! GTCAATTTTCTAATGTCATT+GGG - chr4_4:57591195-57591214 Msa0690150:intron 25.0%
CTCAAGAATTTGTCTTATGT+CGG + chr4_4:57589283-57589302 None:intergenic 30.0%
!!! CGTTTTATTTTCTCCCAATT+AGG - chr4_4:57589545-57589564 Msa0690150:intron 30.0%
TTGTTTCCAATGACCTAATT+GGG + chr4_4:57589561-57589580 None:intergenic 30.0%
TTTGTTTCCAATGACCTAAT+TGG + chr4_4:57589562-57589581 None:intergenic 30.0%
ATTAGGTCATTGGAAACAAA+TGG - chr4_4:57589562-57589581 Msa0690150:intron 30.0%
TTAGGTCATTGGAAACAAAT+GGG - chr4_4:57589563-57589582 Msa0690150:intron 30.0%
GAAGAAAAGAGAAAGGATTA+AGG + chr4_4:57589636-57589655 None:intergenic 30.0%
!! TTCTTCTTATTTCTGCATGT+AGG - chr4_4:57589650-57589669 Msa0690150:CDS 30.0%
!! TCTTCTTATTTCTGCATGTA+GGG - chr4_4:57589651-57589670 Msa0690150:CDS 30.0%
ATAATCACCACACAAAAACT+TGG + chr4_4:57589843-57589862 None:intergenic 30.0%
!! CTGTTGTTGTTTAATTGGTT+AGG - chr4_4:57590056-57590075 Msa0690150:intron 30.0%
! AATTTTTAATGACAAGGTGG+CGG - chr4_4:57590209-57590228 Msa0690150:intron 30.0%
!!! CGGTTGATCTAGAAATTTTT+TGG - chr4_4:57590229-57590248 Msa0690150:intron 30.0%
CACCATTCATAATACAAACA+AGG + chr4_4:57590306-57590325 None:intergenic 30.0%
! TGTTTTGTCGCATTGTTAAT+AGG - chr4_4:57590453-57590472 Msa0690150:intron 30.0%
! GCTTCTTATTACTTCCTTTT+GGG - chr4_4:57590588-57590607 Msa0690150:intron 30.0%
! CTTCTTATTACTTCCTTTTG+GGG - chr4_4:57590589-57590608 Msa0690150:intron 30.0%
! AGGTTTTTAAACTAGTTGAG+AGG - chr4_4:57590821-57590840 Msa0690150:intron 30.0%
! GGTTTTTAAACTAGTTGAGA+GGG - chr4_4:57590822-57590841 Msa0690150:intron 30.0%
AAATAAATGTGATTGCAGAG+CGG - chr4_4:57590846-57590865 Msa0690150:intron 30.0%
GCATTTCAAAATTTATCTCC+TGG - chr4_4:57590994-57591013 Msa0690150:intron 30.0%
TTTCTCAATGAGATCAACAT+GGG + chr4_4:57591128-57591147 None:intergenic 30.0%
! TACTGATTACCAAGATATGT+CGG - chr4_4:57591276-57591295 Msa0690150:intron 30.0%
GGAAAACTATTTAAAGGACA+GGG + chr4_4:57591315-57591334 None:intergenic 30.0%
TGGAAAACTATTTAAAGGAC+AGG + chr4_4:57591316-57591335 None:intergenic 30.0%
CTGCTTGGAAAACTATTTAA+AGG + chr4_4:57591321-57591340 None:intergenic 30.0%
CAGTTATAGCTAGTAAAGTT+AGG - chr4_4:57591338-57591357 Msa0690150:intron 30.0%
TTATAGCTAGTAAAGTTAGG+AGG - chr4_4:57591341-57591360 Msa0690150:intron 30.0%
! CATTTTCATAGAAAAGCTGT+CGG + chr4_4:57591456-57591475 None:intergenic 30.0%
! GACAGCTTTTCTATGAAAAT+GGG - chr4_4:57591455-57591474 Msa0690150:five_prime_UTR 30.0%
TAATTGATACTGATGCTTGT+TGG - chr4_4:57591494-57591513 Msa0690150:five_prime_UTR 30.0%
CTCAAGAATTTGTCTTATGT+CGG + chr4_4:57589283-57589302 None:intergenic 30.0%
!!! CGTTTTATTTTCTCCCAATT+AGG - chr4_4:57589545-57589564 Msa0690150:intron 30.0%
TTGTTTCCAATGACCTAATT+GGG + chr4_4:57589561-57589580 None:intergenic 30.0%
TTTGTTTCCAATGACCTAAT+TGG + chr4_4:57589562-57589581 None:intergenic 30.0%
ATTAGGTCATTGGAAACAAA+TGG - chr4_4:57589562-57589581 Msa0690150:intron 30.0%
TTAGGTCATTGGAAACAAAT+GGG - chr4_4:57589563-57589582 Msa0690150:intron 30.0%
GAAGAAAAGAGAAAGGATTA+AGG + chr4_4:57589636-57589655 None:intergenic 30.0%
!! TTCTTCTTATTTCTGCATGT+AGG - chr4_4:57589650-57589669 Msa0690150:CDS 30.0%
!! TCTTCTTATTTCTGCATGTA+GGG - chr4_4:57589651-57589670 Msa0690150:CDS 30.0%
ATAATCACCACACAAAAACT+TGG + chr4_4:57589843-57589862 None:intergenic 30.0%
!! CTGTTGTTGTTTAATTGGTT+AGG - chr4_4:57590056-57590075 Msa0690150:intron 30.0%
! AATTTTTAATGACAAGGTGG+CGG - chr4_4:57590209-57590228 Msa0690150:intron 30.0%
!!! CGGTTGATCTAGAAATTTTT+TGG - chr4_4:57590229-57590248 Msa0690150:intron 30.0%
CACCATTCATAATACAAACA+AGG + chr4_4:57590306-57590325 None:intergenic 30.0%
! TGTTTTGTCGCATTGTTAAT+AGG - chr4_4:57590453-57590472 Msa0690150:intron 30.0%
! GCTTCTTATTACTTCCTTTT+GGG - chr4_4:57590588-57590607 Msa0690150:intron 30.0%
! CTTCTTATTACTTCCTTTTG+GGG - chr4_4:57590589-57590608 Msa0690150:intron 30.0%
! AGGTTTTTAAACTAGTTGAG+AGG - chr4_4:57590821-57590840 Msa0690150:intron 30.0%
! GGTTTTTAAACTAGTTGAGA+GGG - chr4_4:57590822-57590841 Msa0690150:intron 30.0%
AAATAAATGTGATTGCAGAG+CGG - chr4_4:57590846-57590865 Msa0690150:intron 30.0%
GCATTTCAAAATTTATCTCC+TGG - chr4_4:57590994-57591013 Msa0690150:intron 30.0%
TTTCTCAATGAGATCAACAT+GGG + chr4_4:57591128-57591147 None:intergenic 30.0%
! TACTGATTACCAAGATATGT+CGG - chr4_4:57591276-57591295 Msa0690150:intron 30.0%
GGAAAACTATTTAAAGGACA+GGG + chr4_4:57591315-57591334 None:intergenic 30.0%
TGGAAAACTATTTAAAGGAC+AGG + chr4_4:57591316-57591335 None:intergenic 30.0%
CTGCTTGGAAAACTATTTAA+AGG + chr4_4:57591321-57591340 None:intergenic 30.0%
CAGTTATAGCTAGTAAAGTT+AGG - chr4_4:57591338-57591357 Msa0690150:intron 30.0%
TTATAGCTAGTAAAGTTAGG+AGG - chr4_4:57591341-57591360 Msa0690150:intron 30.0%
! CATTTTCATAGAAAAGCTGT+CGG + chr4_4:57591456-57591475 None:intergenic 30.0%
! GACAGCTTTTCTATGAAAAT+GGG - chr4_4:57591455-57591474 Msa0690150:five_prime_UTR 30.0%
CGACATAAGACAAATTCTTG+AGG - chr4_4:57589281-57589300 Msa0690150:three_prime_UTR 35.0%
GAAGAAGAAGAAGAAGAAGA+AGG + chr4_4:57589404-57589423 None:intergenic 35.0%
! TTTTCTCCCAATTAGGTCAT+TGG - chr4_4:57589552-57589571 Msa0690150:intron 35.0%
AAACAAATGGGACTCTTATC+TGG - chr4_4:57589575-57589594 Msa0690150:intron 35.0%
! ACAAAAACTTGGTAACCCTA+AGG + chr4_4:57589832-57589851 None:intergenic 35.0%
GTTGTTTAATTGGTTAGGGT+TGG - chr4_4:57590061-57590080 Msa0690150:intron 35.0%
! GTTACACCTCAAAAGTTTTG+AGG - chr4_4:57590089-57590108 Msa0690150:intron 35.0%
! TCAACACCTCAAAACTTTTG+AGG + chr4_4:57590098-57590117 None:intergenic 35.0%
!!! AAAAGTTTTGAGGTGTTGAG+TGG - chr4_4:57590099-57590118 Msa0690150:intron 35.0%
!!! AAAGTTTTGAGGTGTTGAGT+GGG - chr4_4:57590100-57590119 Msa0690150:intron 35.0%
! AGAAAATGCGGAAAGGTTTT+TGG - chr4_4:57590136-57590155 Msa0690150:intron 35.0%
!!! GGAAAGGTTTTTGGCTTATT+TGG - chr4_4:57590145-57590164 Msa0690150:intron 35.0%
TTATTTGGCACGCAACAATT+TGG - chr4_4:57590160-57590179 Msa0690150:intron 35.0%
TATTTGGCACGCAACAATTT+GGG - chr4_4:57590161-57590180 Msa0690150:intron 35.0%
AAACGAATTGCTTCAATAGG+CGG - chr4_4:57590334-57590353 Msa0690150:intron 35.0%
! GAGCATTGTATTAGACTTAG+AGG - chr4_4:57590375-57590394 Msa0690150:intron 35.0%
!!! TGTAGCATTTTTGAGATGGT+TGG - chr4_4:57590418-57590437 Msa0690150:intron 35.0%
!!! GTAGCATTTTTGAGATGGTT+GGG - chr4_4:57590419-57590438 Msa0690150:intron 35.0%
AGACAGCTAGCTAAAACAAA+AGG + chr4_4:57590532-57590551 None:intergenic 35.0%
! GGCTTCTTATTACTTCCTTT+TGG - chr4_4:57590587-57590606 Msa0690150:intron 35.0%
!! TTATTACTTCCTTTTGGGGA+TGG - chr4_4:57590593-57590612 Msa0690150:intron 35.0%
!! TATTACTTCCTTTTGGGGAT+GGG - chr4_4:57590594-57590613 Msa0690150:intron 35.0%
TGGAAACCGAATACACAATT+AGG + chr4_4:57590675-57590694 None:intergenic 35.0%
AATAAATGTGATTGCAGAGC+GGG - chr4_4:57590847-57590866 Msa0690150:intron 35.0%
GTTTCTCAATGAGATCAACA+TGG + chr4_4:57591129-57591148 None:intergenic 35.0%
CTTTACTAGCTATAACTGCT+TGG + chr4_4:57591336-57591355 None:intergenic 35.0%
! CGACAGCTTTTCTATGAAAA+TGG - chr4_4:57591454-57591473 Msa0690150:five_prime_UTR 35.0%
CGACATAAGACAAATTCTTG+AGG - chr4_4:57589281-57589300 Msa0690150:three_prime_UTR 35.0%
GAAGAAGAAGAAGAAGAAGA+AGG + chr4_4:57589404-57589423 None:intergenic 35.0%
! TTTTCTCCCAATTAGGTCAT+TGG - chr4_4:57589552-57589571 Msa0690150:intron 35.0%
AAACAAATGGGACTCTTATC+TGG - chr4_4:57589575-57589594 Msa0690150:intron 35.0%
! ACAAAAACTTGGTAACCCTA+AGG + chr4_4:57589832-57589851 None:intergenic 35.0%
GTTGTTTAATTGGTTAGGGT+TGG - chr4_4:57590061-57590080 Msa0690150:intron 35.0%
! GTTACACCTCAAAAGTTTTG+AGG - chr4_4:57590089-57590108 Msa0690150:intron 35.0%
! TCAACACCTCAAAACTTTTG+AGG + chr4_4:57590098-57590117 None:intergenic 35.0%
!!! AAAAGTTTTGAGGTGTTGAG+TGG - chr4_4:57590099-57590118 Msa0690150:intron 35.0%
!!! AAAGTTTTGAGGTGTTGAGT+GGG - chr4_4:57590100-57590119 Msa0690150:intron 35.0%
! AGAAAATGCGGAAAGGTTTT+TGG - chr4_4:57590136-57590155 Msa0690150:intron 35.0%
!!! GGAAAGGTTTTTGGCTTATT+TGG - chr4_4:57590145-57590164 Msa0690150:intron 35.0%
TTATTTGGCACGCAACAATT+TGG - chr4_4:57590160-57590179 Msa0690150:intron 35.0%
TATTTGGCACGCAACAATTT+GGG - chr4_4:57590161-57590180 Msa0690150:intron 35.0%
AAACGAATTGCTTCAATAGG+CGG - chr4_4:57590334-57590353 Msa0690150:intron 35.0%
! GAGCATTGTATTAGACTTAG+AGG - chr4_4:57590375-57590394 Msa0690150:intron 35.0%
!!! TGTAGCATTTTTGAGATGGT+TGG - chr4_4:57590418-57590437 Msa0690150:intron 35.0%
!!! GTAGCATTTTTGAGATGGTT+GGG - chr4_4:57590419-57590438 Msa0690150:intron 35.0%
AGACAGCTAGCTAAAACAAA+AGG + chr4_4:57590532-57590551 None:intergenic 35.0%
! GGCTTCTTATTACTTCCTTT+TGG - chr4_4:57590587-57590606 Msa0690150:intron 35.0%
!! TTATTACTTCCTTTTGGGGA+TGG - chr4_4:57590593-57590612 Msa0690150:intron 35.0%
!! TATTACTTCCTTTTGGGGAT+GGG - chr4_4:57590594-57590613 Msa0690150:intron 35.0%
TGGAAACCGAATACACAATT+AGG + chr4_4:57590675-57590694 None:intergenic 35.0%
AATAAATGTGATTGCAGAGC+GGG - chr4_4:57590847-57590866 Msa0690150:intron 35.0%
GTTTCTCAATGAGATCAACA+TGG + chr4_4:57591129-57591148 None:intergenic 35.0%
CTTTACTAGCTATAACTGCT+TGG + chr4_4:57591336-57591355 None:intergenic 35.0%
! CGACAGCTTTTCTATGAAAA+TGG - chr4_4:57591454-57591473 Msa0690150:five_prime_UTR 35.0%
TCCACAAGTGAAACAACGAA+CGG + chr4_4:57589364-57589383 None:intergenic 40.0%
! TCGTTGTTTCACTTGTGGAA+AGG - chr4_4:57589365-57589384 Msa0690150:three_prime_UTR 40.0%
TTCAAGCCGATTACACTGAA+GGG - chr4_4:57589604-57589623 Msa0690150:intron 40.0%
! AGGGTTACCAAGTTTTTGTG+TGG - chr4_4:57589833-57589852 Msa0690150:intron 40.0%
TATTGTGGAATAGAGGAGCA+TGG - chr4_4:57589918-57589937 Msa0690150:intron 40.0%
! GCACTGACACTTATAATCGA+AGG - chr4_4:57589972-57589991 Msa0690150:intron 40.0%
!! TAATTGGTTAGGGTTGGTTG+TGG - chr4_4:57590067-57590086 Msa0690150:intron 40.0%
!! CTGCTGTAGCATTTTTGAGA+TGG - chr4_4:57590414-57590433 Msa0690150:intron 40.0%
CTAGTCCTGAAATTTGTGTG+CGG - chr4_4:57590493-57590512 Msa0690150:intron 40.0%
! TTGTGTGCGGTCCTTTTTAA+TGG - chr4_4:57590506-57590525 Msa0690150:intron 40.0%
CTGTCTGTTGTGTGTAAACT+TGG - chr4_4:57590546-57590565 Msa0690150:intron 40.0%
TGTTGTGTGTAAACTTGGAC+AGG - chr4_4:57590551-57590570 Msa0690150:intron 40.0%
GTTGTGTGTAAACTTGGACA+GGG - chr4_4:57590552-57590571 Msa0690150:intron 40.0%
TTGTGTGTAAACTTGGACAG+GGG - chr4_4:57590553-57590572 Msa0690150:intron 40.0%
!!! TGGACAGGGGTTGTTTTTAT+TGG - chr4_4:57590566-57590585 Msa0690150:intron 40.0%
! GGGTTTTTGTCTATGCGTTT+AGG - chr4_4:57590614-57590633 Msa0690150:intron 40.0%
TGTATGTGTCAGTGTTTCGT+AGG - chr4_4:57590801-57590820 Msa0690150:intron 40.0%
ATATTTAAGGGACGCAGTCA+GGG + chr4_4:57590958-57590977 None:intergenic 40.0%
TATATTTAAGGGACGCAGTC+AGG + chr4_4:57590959-57590978 None:intergenic 40.0%
CATACATTTGCTTGCAGCTA+TGG - chr4_4:57591229-57591248 Msa0690150:intron 40.0%
GGTAATCAGTAGTTCCTAAC+TGG + chr4_4:57591267-57591286 None:intergenic 40.0%
TCCACAAGTGAAACAACGAA+CGG + chr4_4:57589364-57589383 None:intergenic 40.0%
! TCGTTGTTTCACTTGTGGAA+AGG - chr4_4:57589365-57589384 Msa0690150:three_prime_UTR 40.0%
TTCAAGCCGATTACACTGAA+GGG - chr4_4:57589604-57589623 Msa0690150:intron 40.0%
! AGGGTTACCAAGTTTTTGTG+TGG - chr4_4:57589833-57589852 Msa0690150:intron 40.0%
TATTGTGGAATAGAGGAGCA+TGG - chr4_4:57589918-57589937 Msa0690150:intron 40.0%
! GCACTGACACTTATAATCGA+AGG - chr4_4:57589972-57589991 Msa0690150:intron 40.0%
!! TAATTGGTTAGGGTTGGTTG+TGG - chr4_4:57590067-57590086 Msa0690150:intron 40.0%
!! CTGCTGTAGCATTTTTGAGA+TGG - chr4_4:57590414-57590433 Msa0690150:intron 40.0%
CTAGTCCTGAAATTTGTGTG+CGG - chr4_4:57590493-57590512 Msa0690150:intron 40.0%
! TTGTGTGCGGTCCTTTTTAA+TGG - chr4_4:57590506-57590525 Msa0690150:intron 40.0%
CTGTCTGTTGTGTGTAAACT+TGG - chr4_4:57590546-57590565 Msa0690150:intron 40.0%
TGTTGTGTGTAAACTTGGAC+AGG - chr4_4:57590551-57590570 Msa0690150:intron 40.0%
GTTGTGTGTAAACTTGGACA+GGG - chr4_4:57590552-57590571 Msa0690150:intron 40.0%
TTGTGTGTAAACTTGGACAG+GGG - chr4_4:57590553-57590572 Msa0690150:intron 40.0%
!!! TGGACAGGGGTTGTTTTTAT+TGG - chr4_4:57590566-57590585 Msa0690150:intron 40.0%
! GGGTTTTTGTCTATGCGTTT+AGG - chr4_4:57590614-57590633 Msa0690150:intron 40.0%
TGTATGTGTCAGTGTTTCGT+AGG - chr4_4:57590801-57590820 Msa0690150:intron 40.0%
ATATTTAAGGGACGCAGTCA+GGG + chr4_4:57590958-57590977 None:intergenic 40.0%
TATATTTAAGGGACGCAGTC+AGG + chr4_4:57590959-57590978 None:intergenic 40.0%
CATACATTTGCTTGCAGCTA+TGG - chr4_4:57591229-57591248 Msa0690150:intron 40.0%
GGTAATCAGTAGTTCCTAAC+TGG + chr4_4:57591267-57591286 None:intergenic 40.0%
! AGTTCTAGCAGTGTCTTGAG+CGG - chr4_4:57589306-57589325 Msa0690150:three_prime_UTR 45.0%
CCACAAGTGAAACAACGAAC+GGG + chr4_4:57589363-57589382 None:intergenic 45.0%
CTTCAAGCCGATTACACTGA+AGG - chr4_4:57589603-57589622 Msa0690150:intron 45.0%
CACTGACCCTTCAGTGTAAT+CGG + chr4_4:57589613-57589632 None:intergenic 45.0%
!! TTTGAGGTGTTGAGTGGGTT+AGG - chr4_4:57590105-57590124 Msa0690150:intron 45.0%
!! TTGAGGTGTTGAGTGGGTTA+GGG - chr4_4:57590106-57590125 Msa0690150:intron 45.0%
TAGGGAGTGGAGAGAAAATG+CGG - chr4_4:57590124-57590143 Msa0690150:intron 45.0%
AGTGGAGAGAAAATGCGGAA+AGG - chr4_4:57590129-57590148 Msa0690150:intron 45.0%
ACGCAACAATTTGGGTGCTT+TGG - chr4_4:57590169-57590188 Msa0690150:intron 45.0%
TACAGCAGAAAGCAAACAGC+AGG + chr4_4:57590402-57590421 None:intergenic 45.0%
GAGATGGTTGGGTGATCTAT+TGG - chr4_4:57590430-57590449 Msa0690150:intron 45.0%
GTCGCATTGTTAATAGGCAG+TGG - chr4_4:57590459-57590478 Msa0690150:intron 45.0%
AAGGACCGCACACAAATTTC+AGG + chr4_4:57590501-57590520 None:intergenic 45.0%
GACAAAAACCCATCCCCAAA+AGG + chr4_4:57590605-57590624 None:intergenic 45.0%
! GTTTAGGTGTTGCCTTGTTG+TGG - chr4_4:57590630-57590649 Msa0690150:intron 45.0%
AAAACAGCCCAACCACAACA+AGG + chr4_4:57590645-57590664 None:intergenic 45.0%
TAAAAGACGTGCAAGAGAGC+TGG + chr4_4:57590695-57590714 None:intergenic 45.0%
! TATGGATTGCAGAGATGCAC+TGG - chr4_4:57591057-57591076 Msa0690150:intron 45.0%
TTTGCTTGCAGCTATGGAGA+AGG - chr4_4:57591235-57591254 Msa0690150:intron 45.0%
GCAACGTAACCGACATATCT+TGG + chr4_4:57591288-57591307 None:intergenic 45.0%
! AGTTCTAGCAGTGTCTTGAG+CGG - chr4_4:57589306-57589325 Msa0690150:three_prime_UTR 45.0%
CCACAAGTGAAACAACGAAC+GGG + chr4_4:57589363-57589382 None:intergenic 45.0%
CTTCAAGCCGATTACACTGA+AGG - chr4_4:57589603-57589622 Msa0690150:intron 45.0%
CACTGACCCTTCAGTGTAAT+CGG + chr4_4:57589613-57589632 None:intergenic 45.0%
!! TTTGAGGTGTTGAGTGGGTT+AGG - chr4_4:57590105-57590124 Msa0690150:intron 45.0%
!! TTGAGGTGTTGAGTGGGTTA+GGG - chr4_4:57590106-57590125 Msa0690150:intron 45.0%
TAGGGAGTGGAGAGAAAATG+CGG - chr4_4:57590124-57590143 Msa0690150:intron 45.0%
AGTGGAGAGAAAATGCGGAA+AGG - chr4_4:57590129-57590148 Msa0690150:intron 45.0%
ACGCAACAATTTGGGTGCTT+TGG - chr4_4:57590169-57590188 Msa0690150:intron 45.0%
TACAGCAGAAAGCAAACAGC+AGG + chr4_4:57590402-57590421 None:intergenic 45.0%
GAGATGGTTGGGTGATCTAT+TGG - chr4_4:57590430-57590449 Msa0690150:intron 45.0%
GTCGCATTGTTAATAGGCAG+TGG - chr4_4:57590459-57590478 Msa0690150:intron 45.0%
AAGGACCGCACACAAATTTC+AGG + chr4_4:57590501-57590520 None:intergenic 45.0%
GACAAAAACCCATCCCCAAA+AGG + chr4_4:57590605-57590624 None:intergenic 45.0%
! GTTTAGGTGTTGCCTTGTTG+TGG - chr4_4:57590630-57590649 Msa0690150:intron 45.0%
AAAACAGCCCAACCACAACA+AGG + chr4_4:57590645-57590664 None:intergenic 45.0%
TAAAAGACGTGCAAGAGAGC+TGG + chr4_4:57590695-57590714 None:intergenic 45.0%
! TATGGATTGCAGAGATGCAC+TGG - chr4_4:57591057-57591076 Msa0690150:intron 45.0%
TTTGCTTGCAGCTATGGAGA+AGG - chr4_4:57591235-57591254 Msa0690150:intron 45.0%
GCAACGTAACCGACATATCT+TGG + chr4_4:57591288-57591307 None:intergenic 45.0%
!!! TTTTGATTAATAAAAAAAAA+GGG + chr4_4:57589682-57589701 None:intergenic 5.0%
!!! ATTTTGATTAATAAAAAAAA+AGG + chr4_4:57589683-57589702 None:intergenic 5.0%
!!! TTTTGATTAATAAAAAAAAA+GGG + chr4_4:57589682-57589701 None:intergenic 5.0%
!!! ATTTTGATTAATAAAAAAAA+AGG + chr4_4:57589683-57589702 None:intergenic 5.0%
GTGTCTTGAGCGGAGAAACA+AGG - chr4_4:57589316-57589335 Msa0690150:three_prime_UTR 50.0%
! CCCGTTCGTTGTTTCACTTG+TGG - chr4_4:57589360-57589379 Msa0690150:three_prime_UTR 50.0%
CGAATTGCTTCAATAGGCGG+TGG - chr4_4:57590337-57590356 Msa0690150:intron 50.0%
ATTGCTTCAATAGGCGGTGG+TGG - chr4_4:57590340-57590359 Msa0690150:intron 50.0%
TTGCTTCAATAGGCGGTGGT+GGG - chr4_4:57590341-57590360 Msa0690150:intron 50.0%
! AGGTGTTGCCTTGTTGTGGT+TGG - chr4_4:57590634-57590653 Msa0690150:intron 50.0%
! GGTGTTGCCTTGTTGTGGTT+GGG - chr4_4:57590635-57590654 Msa0690150:intron 50.0%
TGGTGTATCAGCGTCAATGC+TGG - chr4_4:57590766-57590785 Msa0690150:intron 50.0%
GGTGTATCAGCGTCAATGCT+GGG - chr4_4:57590767-57590786 Msa0690150:intron 50.0%
AGAGATGCACTGGATGCGTT+GGG - chr4_4:57591067-57591086 Msa0690150:intron 50.0%
!! GTCTGGTTCGGTATTGTTGC+AGG - chr4_4:57591089-57591108 Msa0690150:intron 50.0%
GTGTCTTGAGCGGAGAAACA+AGG - chr4_4:57589316-57589335 Msa0690150:three_prime_UTR 50.0%
! CCCGTTCGTTGTTTCACTTG+TGG - chr4_4:57589360-57589379 Msa0690150:three_prime_UTR 50.0%
CGAATTGCTTCAATAGGCGG+TGG - chr4_4:57590337-57590356 Msa0690150:intron 50.0%
ATTGCTTCAATAGGCGGTGG+TGG - chr4_4:57590340-57590359 Msa0690150:intron 50.0%
TTGCTTCAATAGGCGGTGGT+GGG - chr4_4:57590341-57590360 Msa0690150:intron 50.0%
! AGGTGTTGCCTTGTTGTGGT+TGG - chr4_4:57590634-57590653 Msa0690150:intron 50.0%
! GGTGTTGCCTTGTTGTGGTT+GGG - chr4_4:57590635-57590654 Msa0690150:intron 50.0%
TGGTGTATCAGCGTCAATGC+TGG - chr4_4:57590766-57590785 Msa0690150:intron 50.0%
GGTGTATCAGCGTCAATGCT+GGG - chr4_4:57590767-57590786 Msa0690150:intron 50.0%
AGAGATGCACTGGATGCGTT+GGG - chr4_4:57591067-57591086 Msa0690150:intron 50.0%
!! GTCTGGTTCGGTATTGTTGC+AGG - chr4_4:57591089-57591108 Msa0690150:intron 50.0%
!! GTGTTGAGTGGGTTAGGGAG+TGG - chr4_4:57590111-57590130 Msa0690150:intron 55.0%
ATCAGCGTCAATGCTGGGTC+TGG - chr4_4:57590772-57590791 Msa0690150:intron 55.0%
CAGAGATGCACTGGATGCGT+TGG - chr4_4:57591066-57591085 Msa0690150:intron 55.0%
TGGATGCGTTGGGTCTGGTT+CGG - chr4_4:57591077-57591096 Msa0690150:intron 55.0%
GGAGAAGGCTGAAGCCAGTT+AGG - chr4_4:57591250-57591269 Msa0690150:intron 55.0%
!! GTGTTGAGTGGGTTAGGGAG+TGG - chr4_4:57590111-57590130 Msa0690150:intron 55.0%
ATCAGCGTCAATGCTGGGTC+TGG - chr4_4:57590772-57590791 Msa0690150:intron 55.0%
CAGAGATGCACTGGATGCGT+TGG - chr4_4:57591066-57591085 Msa0690150:intron 55.0%
TGGATGCGTTGGGTCTGGTT+CGG - chr4_4:57591077-57591096 Msa0690150:intron 55.0%
GGAGAAGGCTGAAGCCAGTT+AGG - chr4_4:57591250-57591269 Msa0690150:intron 55.0%
!! CTTCAATAGGCGGTGGTGGG+TGG - chr4_4:57590344-57590363 Msa0690150:intron 60.0%
TGCACTGGATGCGTTGGGTC+TGG - chr4_4:57591072-57591091 Msa0690150:intron 60.0%
!! CTTCAATAGGCGGTGGTGGG+TGG - chr4_4:57590344-57590363 Msa0690150:intron 60.0%
TGCACTGGATGCGTTGGGTC+TGG - chr4_4:57591072-57591091 Msa0690150:intron 60.0%
!! GCGGTGGTGGGTGGTTGTGT+TGG - chr4_4:57590353-57590372 Msa0690150:intron 65.0%
!! GCGGTGGTGGGTGGTTGTGT+TGG - chr4_4:57590353-57590372 Msa0690150:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 57589265 57591515 57589265 ID=Msa0690150;Name=Msa0690150
chr4_4 mRNA 57589265 57591515 57589265 ID=Msa0690150-mRNA-1;Parent=Msa0690150;Name=Msa0690150-mRNA-1;_AED=0.18;_eAED=0.18;_QI=86|1|1|1|0.75|0.6|5|222|71
chr4_4 exon 57589265 57589385 57589265 ID=Msa0690150-mRNA-1:exon:15432;Parent=Msa0690150-mRNA-1
chr4_4 exon 57589408 57589534 57589408 ID=Msa0690150-mRNA-1:exon:15431;Parent=Msa0690150-mRNA-1
chr4_4 exon 57589617 57589711 57589617 ID=Msa0690150-mRNA-1:exon:15430;Parent=Msa0690150-mRNA-1
chr4_4 exon 57591155 57591213 57591155 ID=Msa0690150-mRNA-1:exon:15429;Parent=Msa0690150-mRNA-1
chr4_4 exon 57591394 57591515 57591394 ID=Msa0690150-mRNA-1:exon:15428;Parent=Msa0690150-mRNA-1
chr4_4 five_prime_UTR 57591430 57591515 57591430 ID=Msa0690150-mRNA-1:five_prime_utr;Parent=Msa0690150-mRNA-1
chr4_4 CDS 57591394 57591429 57591394 ID=Msa0690150-mRNA-1:cds;Parent=Msa0690150-mRNA-1
chr4_4 CDS 57591155 57591213 57591155 ID=Msa0690150-mRNA-1:cds;Parent=Msa0690150-mRNA-1
chr4_4 CDS 57589617 57589711 57589617 ID=Msa0690150-mRNA-1:cds;Parent=Msa0690150-mRNA-1
chr4_4 CDS 57589509 57589534 57589509 ID=Msa0690150-mRNA-1:cds;Parent=Msa0690150-mRNA-1
chr4_4 three_prime_UTR 57589408 57589508 57589408 ID=Msa0690150-mRNA-1:three_prime_utr;Parent=Msa0690150-mRNA-1
chr4_4 three_prime_UTR 57589265 57589385 57589265 ID=Msa0690150-mRNA-1:three_prime_utr;Parent=Msa0690150-mRNA-1
Gene Sequence

>Msa0690150

ATGATTATTCCCGTTCGTTGTTTCACTTGTGGAAAGGTCATTGGAAACAAATGGGACTCTTATCTGGACTTTCTTCAAGCCGATTACACTGAAGGAGATGCACTGGATGCGTTGGGTCTGGTTCGGTATTGTTGCAGGCGCATGCTTATGACCCATGTTGATCTCATTGAGAAACTATTGAACTATAACACTATGGAGAAGGCTGAAGCCAGTTAG

Protein sequence

>Msa0690150

MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTMEKAEAS*