AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1124960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1124960 MtrunA17_Chr7g0265761 96.552 58 2 0 3 60 113 170 1.18e-30 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 91 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTGATCTTCTTTGGATC+TGG 0.192571 7_3:+76231403 Msa1124960:three_prime_UTR
GAAAATACAGTTGTTGATTT+AGG 0.205019 7_3:+76231434 Msa1124960:three_prime_UTR
GTGAGCATCTTGATCTTCTT+TGG 0.206390 7_3:+76231397 Msa1124960:three_prime_UTR
AGGGCACTGGTAATACTAAT+TGG 0.246573 7_3:+76229656 Msa1124960:three_prime_UTR
TTTCAATATATAATGGATAT+TGG 0.266175 7_3:+76229507 Msa1124960:three_prime_UTR
GTTATATGGTCATGTGTTAC+TGG 0.280175 7_3:+76231533 Msa1124960:three_prime_UTR
GTTAATTTAATGATTGAATC+AGG 0.281965 7_3:+76230117 Msa1124960:three_prime_UTR
ACAGGATTATGAGGACAATT+TGG 0.284874 7_3:-76230023 None:intergenic
ATATATTTAAAATATTTAAT+TGG 0.290545 7_3:-76230092 None:intergenic
AATCCACTTTCTAGATTATA+CGG 0.293808 7_3:-76229486 None:intergenic
TTTGGAGTCTCCTGCTTCTC+TGG 0.303491 7_3:-76231159 None:intergenic
TGCCTTAGGTTCTCATAATA+AGG 0.315168 7_3:+76231326 Msa1124960:three_prime_UTR
GAATCCTGACTTTGGTTATA+TGG 0.319518 7_3:+76231519 Msa1124960:three_prime_UTR
CAACTCCAATCACCTGTTAC+AGG 0.322194 7_3:-76231208 None:intergenic
TGTTACTGGTGGTTTGGTTA+TGG 0.327232 7_3:+76231547 Msa1124960:three_prime_UTR
TAAAGGAAGTCAAAACAATT+TGG 0.335360 7_3:-76229926 None:intergenic
AGTTGTTGATTTAGGAAAAC+TGG 0.354420 7_3:+76231442 Msa1124960:three_prime_UTR
TCTTGATCTTCTTTGGATCT+GGG 0.356960 7_3:+76231404 Msa1124960:three_prime_UTR
GCAGATTTACCAGCCTGCTT+AGG 0.386812 7_3:-76231120 None:intergenic
AAGTGGATTTCAATATATAA+TGG 0.387939 7_3:+76229500 Msa1124960:three_prime_UTR
TGATGCATTTACAACGGGTT+TGG 0.397107 7_3:-76229381 None:intergenic
CCTTCACTTGGCACTGTGCT+TGG 0.397753 7_3:-76231349 None:intergenic
GTCATGTGTTACTGGTGGTT+TGG 0.406898 7_3:+76231541 Msa1124960:three_prime_UTR
TTTAATTCAATAACTGCAGC+TGG 0.408069 7_3:-76229606 None:intergenic
TAGTCTCCAGTTACCTTCTT+CGG 0.410069 7_3:-76230338 None:intergenic
TTATTCTTTAAACATTCATA+TGG 0.410391 7_3:-76231655 None:intergenic
TGGTTATGGTTAGGTGTTTG+AGG 0.419623 7_3:+76231561 Msa1124960:three_prime_UTR
CTGGTGGTTTGGTTATGGTT+AGG 0.420510 7_3:+76231552 Msa1124960:three_prime_UTR
AAAACATTCCTGTGATGATT+CGG 0.428683 7_3:+76229787 Msa1124960:three_prime_UTR
TTTGCCTTCTTCACAGGTAC+AGG 0.429781 7_3:-76230460 None:intergenic
TTTAAGACTGAAGATGCCTT+AGG 0.434410 7_3:+76231312 Msa1124960:three_prime_UTR
CAGATTTACCAGCCTGCTTA+GGG 0.438934 7_3:-76231119 None:intergenic
ACAGCTGCAAGCCCTGTAAC+AGG 0.439457 7_3:+76231196 Msa1124960:three_prime_UTR
AAACATTCCTGTGATGATTC+GGG 0.444165 7_3:+76229788 Msa1124960:three_prime_UTR
CACAGGTACAGGTGTTTCCT+TGG 0.451744 7_3:-76230449 None:intergenic
GTGTTTGAGGCATATTAGAA+TGG 0.453336 7_3:+76231574 Msa1124960:three_prime_UTR
TAGAAGAAGGTAGGAATACT+TGG 0.454339 7_3:+76229680 Msa1124960:three_prime_UTR
ATTCCACTTAATGCTGCTAA+TGG 0.460106 7_3:+76229245 Msa1124960:CDS
CTTGATCTTCTTTGGATCTG+GGG 0.466662 7_3:+76231405 Msa1124960:three_prime_UTR
TAATAAGCAGCCAGAGAAGC+AGG 0.473969 7_3:+76231149 Msa1124960:three_prime_UTR
TTACCATTAGCAGCATTAAG+TGG 0.478094 7_3:-76229248 None:intergenic
TTAAGATCGAATCCTGACTT+TGG 0.479498 7_3:+76231511 Msa1124960:three_prime_UTR
GGGCACTGGTAATACTAATT+GGG 0.487636 7_3:+76229657 Msa1124960:three_prime_UTR
TCATGACCGACCATGAAAAC+AGG 0.488637 7_3:-76230041 None:intergenic
GTAATGTGTCGTTTAGCTCA+TGG 0.493327 7_3:+76230253 Msa1124960:three_prime_UTR
TTGAATTAAATGAAATGCTA+CGG 0.495050 7_3:+76229619 Msa1124960:three_prime_UTR
GTTTAGAGTATTATTCAACT+TGG 0.499516 7_3:+76231479 Msa1124960:three_prime_UTR
CTGTAATCTCCACTAGACTT+TGG 0.505848 7_3:-76231177 None:intergenic
TTACCAGCCTGCTTAGGGTA+AGG 0.510729 7_3:-76231114 None:intergenic
GGCCTTATTATGAGAACCTA+AGG 0.516695 7_3:-76231328 None:intergenic
TAACCGTATAATCTAGAAAG+TGG 0.519307 7_3:+76229483 Msa1124960:exon
CTAATTGGGTAGAAGAAGGT+AGG 0.526740 7_3:+76229671 Msa1124960:three_prime_UTR
ACCATGAAAACAGGATTATG+AGG 0.531502 7_3:-76230032 None:intergenic
AACACCTGTACCTGTGAAGA+AGG 0.532518 7_3:+76230456 Msa1124960:three_prime_UTR
TTAATTTAATGATTGAATCA+GGG 0.532605 7_3:+76230118 Msa1124960:three_prime_UTR
GCACCATTCACCTCCAACAC+AGG 0.534916 7_3:-76229359 None:intergenic
AATACTAATTGGGTAGAAGA+AGG 0.536290 7_3:+76229667 Msa1124960:three_prime_UTR
AAAATACAAATGTAGGGCAC+TGG 0.544061 7_3:+76229643 Msa1124960:three_prime_UTR
TGATACTCCTTACCCTAAGC+AGG 0.550019 7_3:+76231107 Msa1124960:three_prime_UTR
TTTGTCACTCCAGAGAAGAC+TGG 0.556582 7_3:+76230484 Msa1124960:three_prime_UTR
ATGACCATATAACCAAAGTC+AGG 0.561551 7_3:-76231523 None:intergenic
TTTAGATACTGATTCTGAAG+AGG 0.569513 7_3:+76229217 Msa1124960:intron
CAGTTCAGATTCATCTGATG+AGG 0.575058 7_3:+76229442 Msa1124960:CDS
TGTAGGGAAACCTGTGTTGG+AGG 0.575298 7_3:+76229349 Msa1124960:intron
ACTTACAAAATAGATGAAGC+TGG 0.575310 7_3:+76229819 Msa1124960:three_prime_UTR
TAATTTAATGATTGAATCAG+GGG 0.575685 7_3:+76230119 Msa1124960:three_prime_UTR
TTTAATATACGATGTAGACT+TGG 0.578812 7_3:+76230165 Msa1124960:three_prime_UTR
ACTCCTTACCCTAAGCAGGC+TGG 0.582053 7_3:+76231111 Msa1124960:three_prime_UTR
ATTGCCACCCGAATCATCAC+AGG 0.582150 7_3:-76229795 None:intergenic
AAACCTGTGTTGGAGGTGAA+TGG 0.584764 7_3:+76229356 Msa1124960:CDS
TTATGTAGGGAAACCTGTGT+TGG 0.588328 7_3:+76229346 Msa1124960:intron
CATCGAACAACTTTGTGTAT+CGG 0.588928 7_3:-76229572 None:intergenic
GTCGTTTAGCTCATGGCGAA+TGG 0.589514 7_3:+76230260 Msa1124960:three_prime_UTR
GATAAGAGTTATCAACTATG+TGG 0.591682 7_3:+76230068 Msa1124960:three_prime_UTR
ATATGGTCATGTGTTACTGG+TGG 0.595627 7_3:+76231536 Msa1124960:three_prime_UTR
AACTCCAATCACCTGTTACA+GGG 0.600270 7_3:-76231207 None:intergenic
CAGGAGACTCCAAAGTCTAG+TGG 0.603055 7_3:+76231168 Msa1124960:three_prime_UTR
GAGGGTTGCTGAATCTTCCA+AGG 0.606410 7_3:+76230432 Msa1124960:three_prime_UTR
CCAAGCACAGTGCCAAGTGA+AGG 0.607793 7_3:+76231349 Msa1124960:three_prime_UTR
AGACTGAAGGGAGCAACAAG+AGG 0.612717 7_3:+76230413 Msa1124960:intron
TGAGGATTCTAGTGAAGATG+AGG 0.614205 7_3:+76229460 Msa1124960:CDS
GCATATTAGAATGGATGTGT+TGG 0.614978 7_3:+76231583 Msa1124960:three_prime_UTR
CGATACACAAAGTTGTTCGA+TGG 0.619245 7_3:+76229573 Msa1124960:three_prime_UTR
TGATGAGGAGACACCGAAGA+AGG 0.620434 7_3:+76230325 Msa1124960:three_prime_UTR
ACAAAATAGATGAAGCTGGT+CGG 0.620919 7_3:+76229823 Msa1124960:three_prime_UTR
GACTGAAGGGAGCAACAAGA+GGG 0.623418 7_3:+76230414 Msa1124960:intron
AAGCGATGAAGATTCTGATG+AGG 0.625838 7_3:+76230310 Msa1124960:three_prime_UTR
AATTTAATGATTGAATCAGG+GGG 0.634660 7_3:+76230120 Msa1124960:three_prime_UTR
ACATTCCTACTTAAAAGTGA+AGG 0.659299 7_3:+76229883 Msa1124960:three_prime_UTR
CATTCCTGTGATGATTCGGG+TGG 0.685010 7_3:+76229791 Msa1124960:three_prime_UTR
TAGGGTAAGGAGTATCAACG+TGG 0.788217 7_3:-76231101 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATTTAAAATATTTAAT+TGG - chr7_3:76230095-76230114 None:intergenic 0.0%
!! CAATATAAAATAGTATTAAA+AGG - chr7_3:76228984-76229003 None:intergenic 10.0%
!!! TTTCAATATATAATGGATAT+TGG + chr7_3:76229507-76229526 Msa1124960:three_prime_UTR 15.0%
!!! TGTTTTCTAAAGAAATTTTT+TGG - chr7_3:76229720-76229739 None:intergenic 15.0%
!! ATATTTGTACCAAAAATTAA+TGG + chr7_3:76229739-76229758 Msa1124960:three_prime_UTR 15.0%
!!! CATATATAACCATTAATTTT+TGG - chr7_3:76229751-76229770 None:intergenic 15.0%
!! TTAATTTAATGATTGAATCA+GGG + chr7_3:76230118-76230137 Msa1124960:three_prime_UTR 15.0%
!! TCAATAAAAAATTCAGTAAT+CGG - chr7_3:76230196-76230215 None:intergenic 15.0%
!!! ATTACTGAATTTTTTATTGA+AGG + chr7_3:76230196-76230215 Msa1124960:three_prime_UTR 15.0%
!!! ATTCATATTTTAGTTTGTTT+TGG + chr7_3:76230231-76230250 Msa1124960:three_prime_UTR 15.0%
!! CTCAAAATTAAATTCAAATT+CGG - chr7_3:76230384-76230403 None:intergenic 15.0%
!!! ATATCTTATTTTATCAATGT+TGG - chr7_3:76230636-76230655 None:intergenic 15.0%
!! TTATTCTTTAAACATTCATA+TGG - chr7_3:76231658-76231677 None:intergenic 15.0%
!! AGATAAAAAAAATCCAAAGA+AGG - chr7_3:76228512-76228531 None:intergenic 20.0%
!! TCTTGTTGCTAAATTAATAT+TGG + chr7_3:76228529-76228548 Msa1124960:intron 20.0%
!!! CGTTAATGTTTTTGTATAAA+TGG + chr7_3:76228709-76228728 Msa1124960:intron 20.0%
!! AAGATAAAAGAATGTAGTTA+AGG - chr7_3:76229074-76229093 None:intergenic 20.0%
!!! ATTGTTCTAAACATTTATGT+AGG + chr7_3:76229332-76229351 Msa1124960:intron 20.0%
!!! TTGTTCTAAACATTTATGTA+GGG + chr7_3:76229333-76229352 Msa1124960:intron 20.0%
!!! AAGTGGATTTCAATATATAA+TGG + chr7_3:76229500-76229519 Msa1124960:three_prime_UTR 20.0%
!! TTGAATTAAATGAAATGCTA+CGG + chr7_3:76229619-76229638 Msa1124960:three_prime_UTR 20.0%
!! GTTAATTTAATGATTGAATC+AGG + chr7_3:76230117-76230136 Msa1124960:three_prime_UTR 20.0%
!! TAATTTAATGATTGAATCAG+GGG + chr7_3:76230119-76230138 Msa1124960:three_prime_UTR 20.0%
!!! TTTGTTTTCTAATTGTACTT+CGG - chr7_3:76230959-76230978 None:intergenic 20.0%
! GCAATATCAAATTATTTCAG+CGG + chr7_3:76228467-76228486 Msa1124960:intron 25.0%
! TAATATTGTGTTTCCTTCTT+TGG + chr7_3:76228496-76228515 Msa1124960:intron 25.0%
! CAAAAACATTAACGATTCAA+TGG - chr7_3:76228703-76228722 None:intergenic 25.0%
!!! ACATCTTTTGATTTGGTTTT+TGG + chr7_3:76228867-76228886 Msa1124960:intron 25.0%
!!! CATCTTTTGATTTGGTTTTT+GGG + chr7_3:76228868-76228887 Msa1124960:intron 25.0%
! GACAATAGAAATGCATAAAA+TGG - chr7_3:76229288-76229307 None:intergenic 25.0%
! AAAACAGAAAAAGAATCAGA+AGG + chr7_3:76229403-76229422 Msa1124960:CDS 25.0%
! AATCCACTTTCTAGATTATA+CGG - chr7_3:76229489-76229508 None:intergenic 25.0%
! TACGGAAAAATACAAATGTA+GGG + chr7_3:76229637-76229656 Msa1124960:three_prime_UTR 25.0%
! TAAAGGAAGTCAAAACAATT+TGG - chr7_3:76229929-76229948 None:intergenic 25.0%
! CTAAAAACTCATTCACATAA+AGG - chr7_3:76229946-76229965 None:intergenic 25.0%
! AATTTAATGATTGAATCAGG+GGG + chr7_3:76230120-76230139 Msa1124960:three_prime_UTR 25.0%
! TTTAATATACGATGTAGACT+TGG + chr7_3:76230165-76230184 Msa1124960:three_prime_UTR 25.0%
!! AAACTAACAAACAAAGTACT+GGG - chr7_3:76230521-76230540 None:intergenic 25.0%
! AAAACTAACAAACAAAGTAC+TGG - chr7_3:76230522-76230541 None:intergenic 25.0%
! TAATGTCATCTAGATGTATA+AGG + chr7_3:76230659-76230678 Msa1124960:intron 25.0%
!! TTAGTGACAATTTTGTCTTT+TGG + chr7_3:76230898-76230917 Msa1124960:intron 25.0%
! ATTAACAAAGTAGAACTGAA+AGG + chr7_3:76231035-76231054 Msa1124960:intron 25.0%
!! ACGAGAATTATGATATTTTC+AGG + chr7_3:76231063-76231082 Msa1124960:intron 25.0%
!!! AGAATTATGATATTTTCAGG+TGG + chr7_3:76231066-76231085 Msa1124960:intron 25.0%
!! AAATCAACAACTGTATTTTC+AGG - chr7_3:76231434-76231453 None:intergenic 25.0%
!!! GAAAATACAGTTGTTGATTT+AGG + chr7_3:76231434-76231453 Msa1124960:three_prime_UTR 25.0%
!! GTTTAGAGTATTATTCAACT+TGG + chr7_3:76231479-76231498 Msa1124960:three_prime_UTR 25.0%
! TCACAAATCACTATCCTTTT+AGG + chr7_3:76228562-76228581 Msa1124960:intron 30.0%
GTCTCAAATCTTTATATGAC+AGG + chr7_3:76228731-76228750 Msa1124960:intron 30.0%
TTTATATGACAGGCATGTTT+GGG + chr7_3:76228741-76228760 Msa1124960:intron 30.0%
TATCCCATAACTGGAAATAT+GGG + chr7_3:76228904-76228923 Msa1124960:intron 30.0%
AAAGGATATGAATCATGTTC+CGG - chr7_3:76228966-76228985 None:intergenic 30.0%
ATATTAGAACGCATTGTTGT+TGG - chr7_3:76229031-76229050 None:intergenic 30.0%
!! TTTAGATACTGATTCTGAAG+AGG + chr7_3:76229217-76229236 Msa1124960:intron 30.0%
! TGTTTAGAACAATATGACAC+AGG - chr7_3:76229325-76229344 None:intergenic 30.0%
!!! TGTTTTGATGCATTTACAAC+GGG - chr7_3:76229389-76229408 None:intergenic 30.0%
!!! CTGTTTTGATGCATTTACAA+CGG - chr7_3:76229390-76229409 None:intergenic 30.0%
TAACCGTATAATCTAGAAAG+TGG + chr7_3:76229483-76229502 Msa1124960:exon 30.0%
TTTAATTCAATAACTGCAGC+TGG - chr7_3:76229609-76229628 None:intergenic 30.0%
CTACGGAAAAATACAAATGT+AGG + chr7_3:76229636-76229655 Msa1124960:three_prime_UTR 30.0%
AATACTAATTGGGTAGAAGA+AGG + chr7_3:76229667-76229686 Msa1124960:three_prime_UTR 30.0%
AAAACATTCCTGTGATGATT+CGG + chr7_3:76229787-76229806 Msa1124960:three_prime_UTR 30.0%
ACTTACAAAATAGATGAAGC+TGG + chr7_3:76229819-76229838 Msa1124960:three_prime_UTR 30.0%
ACATTCCTACTTAAAAGTGA+AGG + chr7_3:76229883-76229902 Msa1124960:three_prime_UTR 30.0%
!! AAACACCTTCACTTTTAAGT+AGG - chr7_3:76229891-76229910 None:intergenic 30.0%
GATAAGAGTTATCAACTATG+TGG + chr7_3:76230068-76230087 Msa1124960:three_prime_UTR 30.0%
!!! TGAGTTTTGTTTTAGACTGA+AGG + chr7_3:76230400-76230419 Msa1124960:intron 30.0%
!!! GAGTTTTGTTTTAGACTGAA+GGG + chr7_3:76230401-76230420 Msa1124960:intron 30.0%
!! AACTAACAAACAAAGTACTG+GGG - chr7_3:76230520-76230539 None:intergenic 30.0%
! TACAACATTAGTGTCGAATA+AGG - chr7_3:76230582-76230601 None:intergenic 30.0%
TTCGACACTAATGTTGTATA+CGG + chr7_3:76230584-76230603 Msa1124960:intron 30.0%
TTATGCAATAACAGTGCAAA+GGG - chr7_3:76230706-76230725 None:intergenic 30.0%
TTTATGCAATAACAGTGCAA+AGG - chr7_3:76230707-76230726 None:intergenic 30.0%
TGCATAAAATTGCATTGTTG+TGG + chr7_3:76230719-76230738 Msa1124960:intron 30.0%
GTCAGAAAATATTTAACACG+TGG - chr7_3:76230863-76230882 None:intergenic 30.0%
!!! CACAATTTTATTTTGACTGC+AGG + chr7_3:76231286-76231305 Msa1124960:intron 30.0%
AGCTAAAAAAAACCTTCACT+TGG - chr7_3:76231364-76231383 None:intergenic 30.0%
!! AGTTGTTGATTTAGGAAAAC+TGG + chr7_3:76231442-76231461 Msa1124960:three_prime_UTR 30.0%
! GTTTTACCTCAACACCTAAA+AGG - chr7_3:76228579-76228598 None:intergenic 35.0%
!! TTAGGTGTTGAGGTAAAACT+TGG + chr7_3:76228580-76228599 Msa1124960:intron 35.0%
! AAAACTTGGTGAATCACTCA+AGG + chr7_3:76228594-76228613 Msa1124960:intron 35.0%
AAGCATATACCGATGAAATG+TGG - chr7_3:76228645-76228664 None:intergenic 35.0%
CTTTATATGACAGGCATGTT+TGG + chr7_3:76228740-76228759 Msa1124960:intron 35.0%
TTATATGACAGGCATGTTTG+GGG + chr7_3:76228742-76228761 Msa1124960:intron 35.0%
ACCATCAAACTTCACATACA+GGG - chr7_3:76228802-76228821 None:intergenic 35.0%
!! TCCTCAGACATCTTTTGATT+TGG + chr7_3:76228860-76228879 Msa1124960:intron 35.0%
ACCAAATCAAAAGATGTCTG+AGG - chr7_3:76228864-76228883 None:intergenic 35.0%
AATTTGAGCTATCCCATAAC+TGG + chr7_3:76228895-76228914 Msa1124960:intron 35.0%
CTATCCCATAACTGGAAATA+TGG + chr7_3:76228903-76228922 Msa1124960:intron 35.0%
! ATTTAGAATCGAATGCGAAC+CGG + chr7_3:76228944-76228963 Msa1124960:intron 35.0%
ATTCCACTTAATGCTGCTAA+TGG + chr7_3:76229245-76229264 Msa1124960:CDS 35.0%
TTACCATTAGCAGCATTAAG+TGG - chr7_3:76229251-76229270 None:intergenic 35.0%
CATCGAACAACTTTGTGTAT+CGG - chr7_3:76229575-76229594 None:intergenic 35.0%
AAAATACAAATGTAGGGCAC+TGG + chr7_3:76229643-76229662 Msa1124960:three_prime_UTR 35.0%
TAGAAGAAGGTAGGAATACT+TGG + chr7_3:76229680-76229699 Msa1124960:three_prime_UTR 35.0%
AAACATTCCTGTGATGATTC+GGG + chr7_3:76229788-76229807 Msa1124960:three_prime_UTR 35.0%
ACAAAATAGATGAAGCTGGT+CGG + chr7_3:76229823-76229842 Msa1124960:three_prime_UTR 35.0%
ACAGGATTATGAGGACAATT+TGG - chr7_3:76230026-76230045 None:intergenic 35.0%
! TCCTCATAATCCTGTTTTCA+TGG + chr7_3:76230031-76230050 Msa1124960:three_prime_UTR 35.0%
ACCATGAAAACAGGATTATG+AGG - chr7_3:76230035-76230054 None:intergenic 35.0%
! CATAATCCTGTTTTCATGGT+CGG + chr7_3:76230035-76230054 Msa1124960:three_prime_UTR 35.0%
! ACAAATTTTGCCTTCTTCAC+AGG - chr7_3:76230469-76230488 None:intergenic 35.0%
AAAAACTAACCAGTCTTCTC+TGG - chr7_3:76230496-76230515 None:intergenic 35.0%
! TTAGTGTCGAATAAGGCTTA+GGG - chr7_3:76230575-76230594 None:intergenic 35.0%
! ATTAGTGTCGAATAAGGCTT+AGG - chr7_3:76230576-76230595 None:intergenic 35.0%
AGATGTATAAGGTTTGACAG+TGG + chr7_3:76230670-76230689 Msa1124960:intron 35.0%
AACTACTTTGTGACTTATGC+TGG + chr7_3:76230812-76230831 Msa1124960:intron 35.0%
!!! TTATGATATTTTCAGGTGGC+AGG + chr7_3:76231070-76231089 Msa1124960:intron 35.0%
TAAGTGTGTATAGAACGATG+AGG - chr7_3:76231258-76231277 None:intergenic 35.0%
! TTTAAGACTGAAGATGCCTT+AGG + chr7_3:76231312-76231331 Msa1124960:three_prime_UTR 35.0%
TGCCTTAGGTTCTCATAATA+AGG + chr7_3:76231326-76231345 Msa1124960:three_prime_UTR 35.0%
ATCTTGATCTTCTTTGGATC+TGG + chr7_3:76231403-76231422 Msa1124960:three_prime_UTR 35.0%
TCTTGATCTTCTTTGGATCT+GGG + chr7_3:76231404-76231423 Msa1124960:three_prime_UTR 35.0%
TTAAGATCGAATCCTGACTT+TGG + chr7_3:76231511-76231530 Msa1124960:three_prime_UTR 35.0%
GAATCCTGACTTTGGTTATA+TGG + chr7_3:76231519-76231538 Msa1124960:three_prime_UTR 35.0%
ATGACCATATAACCAAAGTC+AGG - chr7_3:76231526-76231545 None:intergenic 35.0%
GTTATATGGTCATGTGTTAC+TGG + chr7_3:76231533-76231552 Msa1124960:three_prime_UTR 35.0%
! GTGTTTGAGGCATATTAGAA+TGG + chr7_3:76231574-76231593 Msa1124960:three_prime_UTR 35.0%
GCATATTAGAATGGATGTGT+TGG + chr7_3:76231583-76231602 Msa1124960:three_prime_UTR 35.0%
ACCAGAAGCAAAAACTGAAT+AGG + chr7_3:76231628-76231647 Msa1124960:three_prime_UTR 35.0%
! TCCTATTCAGTTTTTGCTTC+TGG - chr7_3:76231632-76231651 None:intergenic 35.0%
!! CACTATCCTTTTAGGTGTTG+AGG + chr7_3:76228570-76228589 Msa1124960:intron 40.0%
!! TGGATAAGCTCGCTATTTTC+TGG - chr7_3:76228625-76228644 None:intergenic 40.0%
CGAGCTTATCCACATTTCAT+CGG + chr7_3:76228633-76228652 Msa1124960:intron 40.0%
TATATGACAGGCATGTTTGG+GGG + chr7_3:76228743-76228762 Msa1124960:intron 40.0%
AACTTCACATACAGGGATAC+CGG - chr7_3:76228795-76228814 None:intergenic 40.0%
TCCCTGTATGTGAAGTTTGA+TGG + chr7_3:76228798-76228817 Msa1124960:intron 40.0%
GACCATCAAACTTCACATAC+AGG - chr7_3:76228803-76228822 None:intergenic 40.0%
GCTCCCATATTTCCAGTTAT+GGG - chr7_3:76228910-76228929 None:intergenic 40.0%
AGTGAAGATGAAGCTTCTGA+TGG + chr7_3:76229099-76229118 Msa1124960:intron 40.0%
TTATGTAGGGAAACCTGTGT+TGG + chr7_3:76229346-76229365 Msa1124960:intron 40.0%
! TGATGCATTTACAACGGGTT+TGG - chr7_3:76229384-76229403 None:intergenic 40.0%
CAGTTCAGATTCATCTGATG+AGG + chr7_3:76229442-76229461 Msa1124960:CDS 40.0%
TGAGGATTCTAGTGAAGATG+AGG + chr7_3:76229460-76229479 Msa1124960:CDS 40.0%
!! GTATCGGCACAACATCTTTT+TGG - chr7_3:76229559-76229578 None:intergenic 40.0%
CGATACACAAAGTTGTTCGA+TGG + chr7_3:76229573-76229592 Msa1124960:three_prime_UTR 40.0%
!! AGGGCACTGGTAATACTAAT+TGG + chr7_3:76229656-76229675 Msa1124960:three_prime_UTR 40.0%
!! GGGCACTGGTAATACTAATT+GGG + chr7_3:76229657-76229676 Msa1124960:three_prime_UTR 40.0%
CTAATTGGGTAGAAGAAGGT+AGG + chr7_3:76229671-76229690 Msa1124960:three_prime_UTR 40.0%
!! GTAATGTGTCGTTTAGCTCA+TGG + chr7_3:76230253-76230272 Msa1124960:three_prime_UTR 40.0%
AAGCGATGAAGATTCTGATG+AGG + chr7_3:76230310-76230329 Msa1124960:three_prime_UTR 40.0%
TAGTCTCCAGTTACCTTCTT+CGG - chr7_3:76230341-76230360 None:intergenic 40.0%
! TAGTGTCGAATAAGGCTTAG+GGG - chr7_3:76230574-76230593 None:intergenic 40.0%
AAGTGGTGAGAGAACATTGT+GGG - chr7_3:76230757-76230776 None:intergenic 40.0%
AAAGTGGTGAGAGAACATTG+TGG - chr7_3:76230758-76230777 None:intergenic 40.0%
ATGGAGCAGCTATTGCTTTA+TGG + chr7_3:76230786-76230805 Msa1124960:intron 40.0%
GTCCAACGAGGTTAAACTAT+CGG - chr7_3:76230989-76231008 None:intergenic 40.0%
ACAAATTAACGAGTCCAACG+AGG - chr7_3:76231001-76231020 None:intergenic 40.0%
CTGTAATCTCCACTAGACTT+TGG - chr7_3:76231180-76231199 None:intergenic 40.0%
AACTCCAATCACCTGTTACA+GGG - chr7_3:76231210-76231229 None:intergenic 40.0%
!! GGCCTTATTATGAGAACCTA+AGG - chr7_3:76231331-76231350 None:intergenic 40.0%
GTGAGCATCTTGATCTTCTT+TGG + chr7_3:76231397-76231416 Msa1124960:three_prime_UTR 40.0%
CTTGATCTTCTTTGGATCTG+GGG + chr7_3:76231405-76231424 Msa1124960:three_prime_UTR 40.0%
! ATATGGTCATGTGTTACTGG+TGG + chr7_3:76231536-76231555 Msa1124960:three_prime_UTR 40.0%
!! TGTTACTGGTGGTTTGGTTA+TGG + chr7_3:76231547-76231566 Msa1124960:three_prime_UTR 40.0%
TGGTTATGGTTAGGTGTTTG+AGG + chr7_3:76231561-76231580 Msa1124960:three_prime_UTR 40.0%
ACTTCACATACAGGGATACC+GGG - chr7_3:76228794-76228813 None:intergenic 45.0%
GATGGTCAGAAGCTTCAACT+TGG + chr7_3:76228816-76228835 Msa1124960:intron 45.0%
CGCTCCCATATTTCCAGTTA+TGG - chr7_3:76228911-76228930 None:intergenic 45.0%
!!! TATGGGAGCGTCTTCTTTTC+TGG + chr7_3:76228921-76228940 Msa1124960:intron 45.0%
AAACCTGTGTTGGAGGTGAA+TGG + chr7_3:76229356-76229375 Msa1124960:CDS 45.0%
TCATGACCGACCATGAAAAC+AGG - chr7_3:76230044-76230063 None:intergenic 45.0%
AACACCTGTACCTGTGAAGA+AGG + chr7_3:76230456-76230475 Msa1124960:three_prime_UTR 45.0%
TTTGCCTTCTTCACAGGTAC+AGG - chr7_3:76230463-76230482 None:intergenic 45.0%
TTTGTCACTCCAGAGAAGAC+TGG + chr7_3:76230484-76230503 Msa1124960:three_prime_UTR 45.0%
GGTACTAATGCTGCTCATCT+TGG + chr7_3:76230605-76230624 Msa1124960:intron 45.0%
AGTGGTGAGAGAACATTGTG+GGG - chr7_3:76230756-76230775 None:intergenic 45.0%
CTCACCACTTTGCCTATTCA+TGG + chr7_3:76230767-76230786 Msa1124960:intron 45.0%
TGCTCCATGAATAGGCAAAG+TGG - chr7_3:76230774-76230793 None:intergenic 45.0%
GCAATAGCTGCTCCATGAAT+AGG - chr7_3:76230782-76230801 None:intergenic 45.0%
GACCGATAGTTTAACCTCGT+TGG + chr7_3:76230984-76231003 Msa1124960:intron 45.0%
!! TAGGGTAAGGAGTATCAACG+TGG - chr7_3:76231104-76231123 None:intergenic 45.0%
TGATACTCCTTACCCTAAGC+AGG + chr7_3:76231107-76231126 Msa1124960:three_prime_UTR 45.0%
CAGATTTACCAGCCTGCTTA+GGG - chr7_3:76231122-76231141 None:intergenic 45.0%
TAATAAGCAGCCAGAGAAGC+AGG + chr7_3:76231149-76231168 Msa1124960:three_prime_UTR 45.0%
CAACTCCAATCACCTGTTAC+AGG - chr7_3:76231211-76231230 None:intergenic 45.0%
TGTATAGAACGATGAGGAGG+AGG - chr7_3:76231252-76231271 None:intergenic 45.0%
GTGTGTATAGAACGATGAGG+AGG - chr7_3:76231255-76231274 None:intergenic 45.0%
! GTCATGTGTTACTGGTGGTT+TGG + chr7_3:76231541-76231560 Msa1124960:three_prime_UTR 45.0%
!! CTGGTGGTTTGGTTATGGTT+AGG + chr7_3:76231552-76231571 Msa1124960:three_prime_UTR 45.0%
GGGAGGTCAGCAAGGATAAA+GGG + chr7_3:76228763-76228782 Msa1124960:intron 50.0%
CAAGGATAAAGGGAGTGACC+CGG + chr7_3:76228773-76228792 Msa1124960:intron 50.0%
TGTAGGGAAACCTGTGTTGG+AGG + chr7_3:76229349-76229368 Msa1124960:intron 50.0%
! CATTCCTGTGATGATTCGGG+TGG + chr7_3:76229791-76229810 Msa1124960:three_prime_UTR 50.0%
ATTGCCACCCGAATCATCAC+AGG - chr7_3:76229798-76229817 None:intergenic 50.0%
AGGGGGCTATTGTGTCTTAG+TGG + chr7_3:76230137-76230156 Msa1124960:three_prime_UTR 50.0%
! GTCGTTTAGCTCATGGCGAA+TGG + chr7_3:76230260-76230279 Msa1124960:three_prime_UTR 50.0%
TGATGAGGAGACACCGAAGA+AGG + chr7_3:76230325-76230344 Msa1124960:three_prime_UTR 50.0%
GAGACACCGAAGAAGGTAAC+TGG + chr7_3:76230332-76230351 Msa1124960:intron 50.0%
AGACTGAAGGGAGCAACAAG+AGG + chr7_3:76230413-76230432 Msa1124960:intron 50.0%
GACTGAAGGGAGCAACAAGA+GGG + chr7_3:76230414-76230433 Msa1124960:intron 50.0%
GAGGGTTGCTGAATCTTCCA+AGG + chr7_3:76230432-76230451 Msa1124960:three_prime_UTR 50.0%
CACAGGTACAGGTGTTTCCT+TGG - chr7_3:76230452-76230471 None:intergenic 50.0%
TTACCAGCCTGCTTAGGGTA+AGG - chr7_3:76231117-76231136 None:intergenic 50.0%
GCAGATTTACCAGCCTGCTT+AGG - chr7_3:76231123-76231142 None:intergenic 50.0%
! TTTGGAGTCTCCTGCTTCTC+TGG - chr7_3:76231162-76231181 None:intergenic 50.0%
CAGGAGACTCCAAAGTCTAG+TGG + chr7_3:76231168-76231187 Msa1124960:three_prime_UTR 50.0%
CAAGCCCTGTAACAGGTGAT+TGG + chr7_3:76231203-76231222 Msa1124960:intron 50.0%
ATGACAGGCATGTTTGGGGG+AGG + chr7_3:76228746-76228765 Msa1124960:intron 55.0%
ATGTTTGGGGGAGGTCAGCA+AGG + chr7_3:76228755-76228774 Msa1124960:intron 55.0%
GGGGAGGTCAGCAAGGATAA+AGG + chr7_3:76228762-76228781 Msa1124960:intron 55.0%
GCACCATTCACCTCCAACAC+AGG - chr7_3:76229362-76229381 None:intergenic 55.0%
ACTCCTTACCCTAAGCAGGC+TGG + chr7_3:76231111-76231130 Msa1124960:three_prime_UTR 55.0%
ACAGCTGCAAGCCCTGTAAC+AGG + chr7_3:76231196-76231215 Msa1124960:three_prime_UTR 55.0%
CCTTCACTTGGCACTGTGCT+TGG - chr7_3:76231352-76231371 None:intergenic 55.0%
CCAAGCACAGTGCCAAGTGA+AGG + chr7_3:76231349-76231368 Msa1124960:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 76228456 76231695 76228456 ID=Msa1124960;Name=Msa1124960
chr7_3 mRNA 76228456 76231695 76228456 ID=Msa1124960-mRNA-1;Parent=Msa1124960;Name=Msa1124960-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.8|0.83|0.83|1|0.83|6|1465|62
chr7_3 exon 76228456 76228459 76228456 ID=Msa1124960-mRNA-1:exon:20705;Parent=Msa1124960-mRNA-1
chr7_3 exon 76229222 76229266 76229222 ID=Msa1124960-mRNA-1:exon:20706;Parent=Msa1124960-mRNA-1
chr7_3 exon 76229354 76230346 76229354 ID=Msa1124960-mRNA-1:exon:20707;Parent=Msa1124960-mRNA-1
chr7_3 exon 76230415 76230505 76230415 ID=Msa1124960-mRNA-1:exon:20708;Parent=Msa1124960-mRNA-1
chr7_3 exon 76231085 76231217 76231085 ID=Msa1124960-mRNA-1:exon:20709;Parent=Msa1124960-mRNA-1
chr7_3 exon 76231308 76231695 76231308 ID=Msa1124960-mRNA-1:exon:20710;Parent=Msa1124960-mRNA-1
chr7_3 CDS 76228456 76228459 76228456 ID=Msa1124960-mRNA-1:cds;Parent=Msa1124960-mRNA-1
chr7_3 CDS 76229222 76229266 76229222 ID=Msa1124960-mRNA-1:cds;Parent=Msa1124960-mRNA-1
chr7_3 CDS 76229354 76229493 76229354 ID=Msa1124960-mRNA-1:cds;Parent=Msa1124960-mRNA-1
chr7_3 three_prime_UTR 76229494 76230346 76229494 ID=Msa1124960-mRNA-1:three_prime_utr;Parent=Msa1124960-mRNA-1
chr7_3 three_prime_UTR 76230415 76230505 76230415 ID=Msa1124960-mRNA-1:three_prime_utr;Parent=Msa1124960-mRNA-1
chr7_3 three_prime_UTR 76231085 76231217 76231085 ID=Msa1124960-mRNA-1:three_prime_utr;Parent=Msa1124960-mRNA-1
chr7_3 three_prime_UTR 76231308 76231695 76231308 ID=Msa1124960-mRNA-1:three_prime_utr;Parent=Msa1124960-mRNA-1
Gene Sequence

>Msa1124960

ATGGATACTGATTCTGAAGAGGAAGATATTCCACTTAATGCTGCTAATGGGAAACCTGTGTTGGAGGTGAATGGTGCCAAACCCGTTGTAAATGCATCAAAACAGAAAAAGAATCAGAAGGATGCTAGTACTGACGACAGTTCAGATTCATCTGATGAGGATTCTAGTGAAGATGAGGTAACCGTATAA

Protein sequence

>Msa1124960

MDTDSEEEDIPLNAANGKPVLEVNGAKPVVNASKQKKNQKDASTDDSSDSSDEDSSEDEVTV*