AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene001115

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001115.t1 MTR_5g026930 99.331 598 4 0 1 598 1 598 0.0 1243
MS.gene001115.t1 MTR_5g026930 99.599 499 2 0 1 499 1 499 0.0 1038
MS.gene001115.t1 MTR_8g071280 76.000 600 138 3 1 598 1 596 0.0 954
MS.gene001115.t1 MTR_1g101370 45.545 606 302 12 11 590 14 617 0.0 544
MS.gene001115.t1 MTR_0019s0120 48.577 527 258 8 72 590 105 626 2.32e-179 522
MS.gene001115.t1 MTR_8g432680 47.727 528 265 9 72 590 105 630 4.35e-178 518
MS.gene001115.t1 MTR_8g100075 46.970 528 266 8 72 590 98 620 9.51e-178 517
MS.gene001115.t1 MTR_7g076170 47.874 541 261 11 73 598 102 636 1.62e-173 507
MS.gene001115.t1 MTR_8g055840 43.000 600 312 11 13 590 9 600 7.96e-168 491
MS.gene001115.t1 MTR_5g040360 41.667 600 319 10 13 590 9 599 8.10e-167 489
MS.gene001115.t1 MTR_4g098890 43.874 604 301 12 13 589 10 602 2.29e-164 509
MS.gene001115.t1 MTR_7g006060 46.139 518 269 7 57 566 28 543 1.56e-163 479
MS.gene001115.t1 MTR_3g040370 42.738 599 311 14 13 590 10 597 7.38e-163 478
MS.gene001115.t1 MTR_7g076150 43.503 531 274 9 71 591 74 588 1.47e-152 451
MS.gene001115.t1 MTR_5g080720 42.679 560 296 11 38 587 93 637 1.77e-152 453
MS.gene001115.t1 MTR_1g442840 38.818 626 325 11 13 595 10 620 2.13e-151 450
MS.gene001115.t1 MTR_8g432620 40.250 559 297 10 49 590 62 600 1.85e-149 444
MS.gene001115.t1 MTR_1g069785 40.134 598 327 11 13 595 9 590 2.54e-148 441
MS.gene001115.t1 MTR_0019s0120 49.425 435 208 7 72 499 105 534 9.11e-148 437
MS.gene001115.t1 MTR_1g442840 43.056 504 266 6 103 595 14 507 2.10e-147 436
MS.gene001115.t1 MTR_3g068990 43.015 544 282 11 60 589 138 667 3.71e-146 438
MS.gene001115.t1 MTR_1g075900 40.727 550 291 9 66 595 85 619 1.40e-144 432
MS.gene001115.t1 MTR_5g021100 41.573 534 273 13 81 597 329 840 4.38e-142 433
MS.gene001115.t1 MTR_8g076650 43.074 527 266 11 81 593 387 893 1.33e-140 431
MS.gene001115.t1 MTR_3g096480 42.322 534 269 14 81 595 268 781 5.00e-139 423
MS.gene001115.t1 MTR_1g029730 41.762 522 277 12 81 589 151 658 9.39e-138 416
MS.gene001115.t1 MTR_5g083150 40.977 532 272 12 81 597 101 605 2.56e-137 413
MS.gene001115.t1 MTR_5g080720 42.656 497 261 10 38 525 93 574 3.82e-134 404
MS.gene001115.t1 MTR_3g088790 41.651 533 271 15 81 593 233 745 2.70e-132 405
MS.gene001115.t1 MTR_7g076150 44.035 461 232 9 141 591 1 445 3.13e-132 394
MS.gene001115.t1 MTR_8g093880 39.785 558 296 14 53 593 275 809 4.36e-132 406
MS.gene001115.t1 MTR_3g071530 41.109 523 270 12 81 592 153 648 6.49e-131 398
MS.gene001115.t1 MTR_1g051055 38.436 601 315 15 25 590 23 603 1.92e-126 385
MS.gene001115.t1 MTR_1g022255 36.641 524 291 13 80 592 208 701 3.54e-110 346
MS.gene001115.t1 MTR_5g064080 32.541 547 315 14 75 591 149 671 9.31e-97 310
MS.gene001115.t1 MTR_3g074780 31.597 576 343 15 51 591 130 689 4.81e-95 306
MS.gene001115.t1 MTR_4g083030 32.149 563 320 15 55 587 71 601 1.25e-90 292
MS.gene001115.t1 MTR_1g022255 32.481 391 227 11 80 460 208 571 1.30e-60 211
MS.gene001115.t1 MTR_5g033760 59.091 66 27 0 533 598 41 106 2.32e-21 90.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001115.t1 AT1G31850 73.588 602 151 4 4 597 2 603 0.0 955
MS.gene001115.t1 AT1G31850 73.588 602 151 4 4 597 2 603 0.0 955
MS.gene001115.t1 AT1G31850 73.588 602 151 4 4 597 2 603 0.0 955
MS.gene001115.t1 AT1G31850 73.588 602 151 4 4 597 2 603 0.0 955
MS.gene001115.t1 AT4G19120 74.000 600 152 3 1 598 1 598 0.0 954
MS.gene001115.t1 AT4G19120 74.000 600 152 3 1 598 1 598 0.0 954
MS.gene001115.t1 AT4G19120 74.451 501 124 3 1 499 1 499 0.0 798
MS.gene001115.t1 AT4G10440 46.629 534 270 8 72 594 93 622 3.87e-178 518
MS.gene001115.t1 AT1G33170 46.255 534 273 8 72 595 110 639 1.02e-175 513
MS.gene001115.t1 AT4G00750 42.459 610 313 12 14 590 18 622 4.04e-173 506
MS.gene001115.t1 AT2G45750 46.516 531 272 7 71 590 86 615 1.26e-171 502
MS.gene001115.t1 AT4G18030 43.137 612 316 11 10 596 5 609 1.66e-170 499
MS.gene001115.t1 AT1G26850 41.408 611 325 13 14 597 11 615 4.52e-165 484
MS.gene001115.t1 AT1G26850 41.408 611 325 13 14 597 11 615 4.52e-165 484
MS.gene001115.t1 AT2G43200 45.703 512 268 8 72 576 91 599 1.91e-162 478
MS.gene001115.t1 AT2G43200 45.703 512 268 8 72 576 91 599 1.91e-162 478
MS.gene001115.t1 AT4G00740 42.752 545 275 12 66 595 77 599 3.53e-157 464
MS.gene001115.t1 AT4G00740 42.752 545 275 12 66 595 77 599 3.53e-157 464
MS.gene001115.t1 AT2G39750 43.382 544 281 11 57 589 164 691 1.48e-148 445
MS.gene001115.t1 AT3G23300 41.774 541 291 8 69 595 76 606 3.49e-146 436
MS.gene001115.t1 AT3G23300 41.774 541 291 8 69 595 76 606 3.49e-146 436
MS.gene001115.t1 AT5G06050 41.575 546 290 11 56 589 135 663 1.13e-145 437
MS.gene001115.t1 AT2G34300 43.797 532 263 12 81 595 250 762 3.55e-145 439
MS.gene001115.t1 AT2G34300 43.797 532 263 12 81 595 250 762 3.55e-145 439
MS.gene001115.t1 AT2G34300 43.797 532 263 12 81 595 250 762 3.55e-145 439
MS.gene001115.t1 AT1G04430 40.753 584 308 13 34 595 51 618 5.31e-145 433
MS.gene001115.t1 AT1G04430 40.753 584 308 13 34 595 51 618 5.31e-145 433
MS.gene001115.t1 AT1G04430 40.753 584 308 13 34 595 51 618 5.31e-145 433
MS.gene001115.t1 AT4G14360 41.774 541 291 8 69 595 73 603 3.82e-142 426
MS.gene001115.t1 AT4G14360 41.774 541 291 8 69 595 73 603 3.82e-142 426
MS.gene001115.t1 AT5G64030 43.289 529 267 11 81 593 308 819 1.16e-140 429
MS.gene001115.t1 AT1G29470 42.857 532 268 13 81 595 250 762 1.86e-140 426
MS.gene001115.t1 AT1G29470 42.857 532 268 13 81 595 250 762 1.86e-140 426
MS.gene001115.t1 AT1G77260 41.293 557 290 13 54 589 115 655 3.48e-140 422
MS.gene001115.t1 AT2G40280 41.697 554 268 16 64 598 72 589 3.22e-137 412
MS.gene001115.t1 AT3G56080 43.048 525 258 14 81 592 114 610 3.48e-137 413
MS.gene001115.t1 AT5G14430 39.833 600 316 15 22 591 21 605 7.21e-137 412
MS.gene001115.t1 AT3G51070 41.495 535 272 12 81 595 381 894 3.33e-136 419
MS.gene001115.t1 AT5G14430 39.333 600 319 15 22 591 21 605 1.40e-134 406
MS.gene001115.t1 AT3G10200 37.124 598 334 13 16 590 10 588 9.14e-130 393
MS.gene001115.t1 AT1G26850 41.393 488 255 11 14 476 11 492 5.26e-128 385
MS.gene001115.t1 AT5G04060 36.529 605 335 12 16 590 12 597 1.27e-124 380
MS.gene001115.t1 AT3G56080 45.197 458 217 13 81 525 114 550 7.52e-124 376
MS.gene001115.t1 AT3G10200 36.007 586 326 13 16 571 10 576 4.81e-121 371
MS.gene001115.t1 AT3G51070 42.174 460 228 11 81 520 381 822 6.71e-118 370
MS.gene001115.t1 AT1G19430 36.053 527 291 15 80 592 230 724 9.23e-109 343
MS.gene001115.t1 AT1G19430 36.053 527 291 15 80 592 230 724 9.23e-109 343
MS.gene001115.t1 AT1G78240 31.086 608 354 17 22 587 92 676 8.49e-94 302
MS.gene001115.t1 AT1G78240 31.086 608 354 17 22 587 92 676 8.49e-94 302
MS.gene001115.t1 AT1G13860 31.588 554 313 11 72 591 81 602 5.16e-92 295
MS.gene001115.t1 AT1G13860 31.588 554 313 11 72 591 81 602 5.16e-92 295
MS.gene001115.t1 AT1G13860 31.588 554 313 11 72 591 81 602 5.16e-92 295
MS.gene001115.t1 AT1G13860 31.588 554 313 11 72 591 81 602 5.16e-92 295
MS.gene001115.t1 AT2G03480 32.092 564 316 14 52 587 66 590 1.44e-84 276
MS.gene001115.t1 AT2G03480 32.270 564 326 16 52 587 66 601 3.79e-84 275
MS.gene001115.t1 AT1G13860 31.828 465 265 9 156 589 1 444 1.53e-77 253
MS.gene001115.t1 AT1G19430 33.924 395 219 13 80 461 230 595 5.77e-64 221
MS.gene001115.t1 AT2G03480 30.882 340 217 7 52 382 66 396 1.52e-44 164

Find 154 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCGTCCCGGAGGATTT+TGG 0.137518 5.2:+17960775 MS.gene001115:CDS
ATGAATGTTGTTTCATCTTA+TGG 0.183938 5.2:+17961338 MS.gene001115:CDS
CTTATCCCATGGACAGAATT+TGG 0.187513 5.2:+17960488 MS.gene001115:CDS
TGAACAAGTGAAATCCTTTC+AGG 0.225038 5.2:-17961143 None:intergenic
TGATAATCATTGCTGCATTC+AGG 0.238492 5.2:-17959414 None:intergenic
TCGAGACTGTCGTCACATTT+TGG 0.252715 5.2:-17961005 None:intergenic
CCCTTCAAACTCCTTTGATA+TGG 0.267872 5.2:+17960448 MS.gene001115:CDS
ACTGACCCATCTTTGATTCC+TGG 0.271124 5.2:-17959989 None:intergenic
GGAGAGAAATTTCAATTTCC+TGG 0.292268 5.2:+17959905 MS.gene001115:CDS
GAAGAATTCGGTGAATTTCT+TGG 0.297915 5.2:-17960758 None:intergenic
TGCGGATGCCATTACAACTA+TGG 0.303028 5.2:+17962258 MS.gene001115:CDS
CTTGGTGGAGTCTTTAAATC+TGG 0.314276 5.2:+17959297 MS.gene001115:CDS
TTCAACCTTTGAGGCCATTT+CGG 0.329744 5.2:-17961113 None:intergenic
CAAATTGAACCTGAGCTTCA+TGG 0.341870 5.2:-17960367 None:intergenic
CTTCAAATTATACAACAAAA+AGG 0.343104 5.2:+17960911 MS.gene001115:CDS
CAACATTCATCTCTACTCTT+TGG 0.346033 5.2:-17959695 None:intergenic
AAAACTACAGGGAGTGTATT+AGG 0.348105 5.2:-17961362 None:intergenic
ATCATAGCAAGCGTTGTCTT+TGG 0.357055 5.2:-17960958 None:intergenic
CCTTGATCAATGATCCTTTG+TGG 0.361183 5.2:+17961312 MS.gene001115:CDS
CTACTCTTTGGCCATCTGAT+TGG 0.368686 5.2:-17959683 None:intergenic
CTTGATCAATGATCCTTTGT+GGG 0.371015 5.2:+17961313 MS.gene001115:CDS
CTCTTTGGCCATCTGATTGG+AGG 0.385100 5.2:-17959680 None:intergenic
TTTATGTTAGGTTGCTAGCT+GGG 0.388813 5.2:+17960289 MS.gene001115:intron
TAATCAGCATTGGTTGATAA+AGG 0.396465 5.2:+17959880 MS.gene001115:CDS
CGCTTGTTTCGTTGTTCCAA+TGG 0.398244 5.2:+17961058 MS.gene001115:CDS
GCCCGCCTGGTCGCAAAATC+CGG 0.400319 5.2:-17962207 None:intergenic
ATCTTGTTTGTGCCAAGGTC+AGG 0.401010 5.2:-17961242 None:intergenic
TGTTGAGAAAGAGAAGATAT+TGG 0.402770 5.2:+17962327 MS.gene001115:CDS
CTGACCCATCTTTGATTCCT+GGG 0.404275 5.2:-17959988 None:intergenic
TTATCGGTACCTTCCATGAT+TGG 0.404488 5.2:+17961396 MS.gene001115:CDS
TACCTATAGACTTACTTTGT+TGG 0.405719 5.2:+17959592 MS.gene001115:CDS
ACATATTCACCAACACCATT+AGG 0.406899 5.2:-17959944 None:intergenic
TAGCTGGGGTGGTGACTTGT+TGG 0.407104 5.2:+17960304 MS.gene001115:CDS
ATCCTCCGGGACGAAGAATT+CGG 0.410892 5.2:-17960770 None:intergenic
TGCTTAGTTCCTCCTCCTCC+TGG 0.414185 5.2:+17959650 MS.gene001115:CDS
CGTGGTATCCCAGCAATTCT+TGG 0.416355 5.2:+17960398 MS.gene001115:CDS
CGGATTATAGCGTGCCCGCC+TGG 0.419332 5.2:-17962220 None:intergenic
GTCAGAGATCGGTTCTTGTT+CGG 0.419349 5.2:-17959231 None:intergenic
ATTTATGTTAGGTTGCTAGC+TGG 0.420475 5.2:+17960288 MS.gene001115:intron
TGCTTGTTAATCCAATCATA+TGG 0.422387 5.2:-17959851 None:intergenic
GAGATGACACCAAGAATTGC+TGG 0.425210 5.2:-17960407 None:intergenic
CAAATTCTGTCCATGGGATA+AGG 0.432198 5.2:-17960487 None:intergenic
CTGCATTCAGGGAAACTAAA+GGG 0.432642 5.2:-17959402 None:intergenic
GCCTCACGTACATGCCGAAA+TGG 0.432992 5.2:+17961099 MS.gene001115:CDS
GAAAGGATTTCACTTGTTCA+AGG 0.433009 5.2:+17961146 MS.gene001115:CDS
AGTTTCAAACATACCAATCA+TGG 0.434398 5.2:-17961409 None:intergenic
TCCCTTCGCCATAGTTGTAA+TGG 0.435017 5.2:-17962266 None:intergenic
GAAGTATGTAATGTTGGAAA+TGG 0.436291 5.2:+17962183 MS.gene001115:CDS
GATAATCATTGCTGCATTCA+GGG 0.443927 5.2:-17959413 None:intergenic
TGTCCATGGGATAAGGCATC+TGG 0.446505 5.2:-17960480 None:intergenic
GGAGTGTACCATGCTGAATC+TGG 0.456691 5.2:-17961029 None:intergenic
ATGGATATGAATACAGCTTA+TGG 0.462958 5.2:+17961275 MS.gene001115:CDS
TGAAGTAGGTCATAGGTTCT+AGG 0.468060 5.2:-17961557 None:intergenic
GAGATCGGTTCTTGTTCGGC+TGG 0.470906 5.2:-17959227 None:intergenic
ATCTAGGATCATGAAGCATA+AGG 0.471201 5.2:+17959188 None:intergenic
ACAGGAATGTGCCATATGAT+TGG 0.476125 5.2:+17959840 MS.gene001115:intron
AGGCCTCGATCGAAAACTAC+AGG 0.476192 5.2:-17961374 None:intergenic
GGTGCAACATTCAACCTTTG+AGG 0.476749 5.2:-17961122 None:intergenic
GTCAGAACTGCAATTGATAC+TGG 0.477826 5.2:+17960010 MS.gene001115:CDS
TGAGCTTCATGGTTATCTCT+TGG 0.482556 5.2:-17960356 None:intergenic
TGAAATGAAGTATGTAATGT+TGG 0.482893 5.2:+17962177 MS.gene001115:CDS
ATCGGTTCTTGTTCGGCTGG+TGG 0.487576 5.2:-17959224 None:intergenic
TTCTTATCTTGTTTGTGCCA+AGG 0.488608 5.2:-17961247 None:intergenic
GAATTACCAAATTCTGTCCA+TGG 0.489900 5.2:-17960494 None:intergenic
CTCATAGTTGACTGGTGGAC+CGG 0.491832 5.2:-17960805 None:intergenic
CATCTTGATCCTGAGTTGGA+TGG 0.492062 5.2:-17962373 None:intergenic
AAATTTCAATTTCCTGGTGG+AGG 0.497318 5.2:+17959911 MS.gene001115:CDS
CTGATCCCAGGAATCAAAGA+TGG 0.497573 5.2:+17959983 MS.gene001115:CDS
AAAAGGATGACATATATGTA+TGG 0.500938 5.2:+17960928 MS.gene001115:CDS
TTCCAACAAAGTAAGTCTAT+AGG 0.502688 5.2:-17959594 None:intergenic
ATCAGCATGAAGTAGGTCAT+AGG 0.503060 5.2:-17961564 None:intergenic
TGACATATATGTATGGCAAA+AGG 0.507120 5.2:+17960935 MS.gene001115:CDS
AAAGAACCTGAGGATTGCTT+AGG 0.514314 5.2:-17959369 None:intergenic
GGCTTGTAACCAGGAGGAGG+AGG 0.516627 5.2:-17959659 None:intergenic
GTAGAGATGAATGTTGGTAC+AGG 0.518059 5.2:+17959702 MS.gene001115:CDS
CTGATTGGAGGCTTGTAACC+AGG 0.519130 5.2:-17959668 None:intergenic
AAGAAGTTGTTGCCTGACCT+TGG 0.519821 5.2:+17961230 MS.gene001115:CDS
TCAGTCATGATAACAGTAAG+TGG 0.521028 5.2:+17961186 MS.gene001115:CDS
TTTGGAGGATAGGTGTCTCT+AGG 0.521324 5.2:-17960987 None:intergenic
GCCATATCAAAGGAGTTTGA+AGG 0.521561 5.2:-17960449 None:intergenic
GGACAAAACCCAAAATCCTC+CGG 0.525700 5.2:-17960784 None:intergenic
GGAGGTACTATGTTTCCTAA+TGG 0.527366 5.2:+17959929 MS.gene001115:CDS
AAGAGATAACCATGAAGCTC+AGG 0.528994 5.2:+17960358 MS.gene001115:CDS
CACCTACGCTCATAGTTGAC+TGG 0.531226 5.2:-17960813 None:intergenic
TTATGTTAGGTTGCTAGCTG+GGG 0.531407 5.2:+17960290 MS.gene001115:intron
TCTTCACTGCTGAAAGCCAC+AGG 0.536372 5.2:+17961591 MS.gene001115:CDS
TATGACCTACTTCATGCTGA+TGG 0.537222 5.2:+17961566 MS.gene001115:CDS
GGTTGAATGTTGCACCTGAA+AGG 0.539137 5.2:+17961129 MS.gene001115:CDS
GATTCACCTAAGCAATCCTC+AGG 0.541290 5.2:+17959363 MS.gene001115:CDS
TGCCATTACAACTATGGCGA+AGG 0.541714 5.2:+17962264 MS.gene001115:CDS
CCACAAAGGATCATTGATCA+AGG 0.542881 5.2:-17961312 None:intergenic
ATGTAATGTTGGAAATGGAC+CGG 0.544880 5.2:+17962188 MS.gene001115:CDS
AAACAAGATAAGAAATGTGA+TGG 0.544976 5.2:+17961256 MS.gene001115:CDS
GCTGCATTCAGGGAAACTAA+AGG 0.545484 5.2:-17959403 None:intergenic
AGCAGAAGTCTAATCAGCAT+TGG 0.548041 5.2:+17959870 MS.gene001115:CDS
TCAAAGGAGTTTGAAGGGAA+AGG 0.552291 5.2:-17960443 None:intergenic
GTCTTTAAATCTGGAAACAA+TGG 0.552619 5.2:+17959306 MS.gene001115:CDS
TTAATGCAAGATCTGATCCC+AGG 0.555758 5.2:+17959971 MS.gene001115:CDS
TGATCGCCGCAGTCAGAGAT+CGG 0.556133 5.2:-17959242 None:intergenic
CAGCATTGGTTGATAAAGGA+AGG 0.557499 5.2:+17959884 MS.gene001115:CDS
ACATGCCGAAATGGCCTCAA+AGG 0.560915 5.2:+17961108 MS.gene001115:CDS
AATCATGGAAGGTACCGATA+AGG 0.562538 5.2:-17961394 None:intergenic
AACTATGAGCGTAGGTGGCG+CGG 0.564106 5.2:+17960819 MS.gene001115:CDS
TGTTAGGTTGCTAGCTGGGG+TGG 0.567384 5.2:+17960293 MS.gene001115:intron
CCATATCAAAGGAGTTTGAA+GGG 0.568671 5.2:-17960448 None:intergenic
ATCACTATCATTGTTCTGTG+TGG 0.571055 5.2:+17959261 MS.gene001115:CDS
GAGAAATTTCAATTTCCTGG+TGG 0.571653 5.2:+17959908 MS.gene001115:CDS
TTGTCATCTTGATCCTGAGT+TGG 0.573323 5.2:-17962377 None:intergenic
CTTAATTTGCAAAGAACCTG+AGG 0.573339 5.2:-17959379 None:intergenic
CTGTGGCAGCCATCCAACTC+AGG 0.575238 5.2:+17962364 MS.gene001115:CDS
ATGAGCGTAGGTGGCGCGGA+TGG 0.575531 5.2:+17960823 MS.gene001115:CDS
GACAAAACCCAAAATCCTCC+GGG 0.575836 5.2:-17960783 None:intergenic
AATTACCAAATTCTGTCCAT+GGG 0.580974 5.2:-17960493 None:intergenic
AATACCTTTGGATCTGTGCA+TGG 0.582765 5.2:-17959447 None:intergenic
CTGCAATTGATACTGGTTGT+GGG 0.583160 5.2:+17960017 MS.gene001115:CDS
TACTCCATGCACAGATCCAA+AGG 0.583464 5.2:+17959443 MS.gene001115:CDS
TCACAGAGATGGAGAAAGTA+CGG 0.584400 5.2:+17959569 MS.gene001115:intron
ATTCACCGAATTCTTCGTCC+CGG 0.585958 5.2:+17960765 MS.gene001115:CDS
AGGATCATGAAGCATAAGGA+TGG 0.586005 5.2:+17959192 None:intergenic
CAAAGAGTAGAGATGAATGT+TGG 0.586343 5.2:+17959696 MS.gene001115:CDS
GCCATTTCGGCATGTACGTG+AGG 0.586487 5.2:-17961100 None:intergenic
AGAATCCATCAGCATGAAGT+AGG 0.586900 5.2:-17961571 None:intergenic
CAGTCAACTATGAGCGTAGG+TGG 0.587123 5.2:+17960814 MS.gene001115:CDS
GCTCCAGATGCCTTATCCCA+TGG 0.588449 5.2:+17960477 MS.gene001115:CDS
CACCGAATTCTTCGTCCCGG+AGG 0.588572 5.2:+17960768 MS.gene001115:CDS
GTTCAATTTGCTCTTGAGCG+TGG 0.589442 5.2:+17960380 MS.gene001115:CDS
CCGCAAAATAACTCGACTCT+CGG 0.592375 5.2:-17962240 None:intergenic
ACTATGTTTCCTAATGGTGT+TGG 0.597032 5.2:+17959935 MS.gene001115:CDS
ACTGCAATTGATACTGGTTG+TGG 0.599923 5.2:+17960016 MS.gene001115:CDS
GGAGGCTTGTAACCAGGAGG+AGG 0.604710 5.2:-17959662 None:intergenic
AGATGACACCAAGAATTGCT+GGG 0.605182 5.2:-17960406 None:intergenic
TGATCCCAGGAATCAAAGAT+GGG 0.614158 5.2:+17959984 MS.gene001115:CDS
GCCATTACAACTATGGCGAA+GGG 0.619558 5.2:+17962265 MS.gene001115:CDS
GTTACAAGCCTCCAATCAGA+TGG 0.620710 5.2:+17959672 MS.gene001115:CDS
CTACGCTCATAGTTGACTGG+TGG 0.622282 5.2:-17960810 None:intergenic
TGAATCAAGTGATTTCTGAA+TGG 0.624350 5.2:-17959346 None:intergenic
AACGGTGGAAGAGCAAAGAT+CGG 0.628576 5.2:+17960851 MS.gene001115:CDS
GATATGAATACAGCTTATGG+TGG 0.634230 5.2:+17961278 MS.gene001115:CDS
CTATGGCGAAGGGAATGAGA+TGG 0.639501 5.2:+17962275 MS.gene001115:CDS
GGTGGTGACTTGTTGGATCG+CGG 0.646853 5.2:+17960311 MS.gene001115:CDS
GTCTCGAACCAGATTCAGCA+TGG 0.653935 5.2:+17961021 MS.gene001115:CDS
TCAAACATACCAATCATGGA+AGG 0.655538 5.2:-17961405 None:intergenic
ACAACATTCATAACCCACAA+AGG 0.657750 5.2:-17961326 None:intergenic
GGAGCAATGAGCCATATCAA+AGG 0.662959 5.2:-17960459 None:intergenic
GGCCTCGATCGAAAACTACA+GGG 0.664815 5.2:-17961373 None:intergenic
TGCAATTGATACTGGTTGTG+GGG 0.666739 5.2:+17960018 MS.gene001115:CDS
ACAACGAAACAAGCGCGAAG+CGG 0.670028 5.2:-17961050 None:intergenic
CACCAGTCAACTATGAGCGT+AGG 0.677148 5.2:+17960811 MS.gene001115:CDS
GCGCGGATGGAACACAACGG+TGG 0.695965 5.2:+17960836 MS.gene001115:CDS
GGAAACATAGTACCTCCACC+AGG 0.698372 5.2:-17959923 None:intergenic
ATTGGAGGCTTGTAACCAGG+AGG 0.710676 5.2:-17959665 None:intergenic
CAAGAACCGATCTCTGACTG+CGG 0.721103 5.2:+17959236 MS.gene001115:CDS
CAGATTTAAAGACTCCACCA+AGG 0.721559 5.2:-17959296 None:intergenic
GTGGCGCGGATGGAACACAA+CGG 0.793897 5.2:+17960833 MS.gene001115:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAACACTTATAATAAGA+TGG + chr5.2:17961684-17961703 MS.gene001115:intron 15.0%
!! TTAGTATTAATTAATACCTT+TGG - chr5.2:17959462-17959481 None:intergenic 15.0%
!! AACTTTAAATATGAACCATA+AGG + chr5.2:17961428-17961447 MS.gene001115:intron 20.0%
!! ACTATTCAAAAGTAAAATGA+AGG - chr5.2:17960054-17960073 None:intergenic 20.0%
!! CTTCAAATTATACAACAAAA+AGG + chr5.2:17960911-17960930 MS.gene001115:CDS 20.0%
!! TCTACAAAAAATTTGATGTT+TGG + chr5.2:17959488-17959507 MS.gene001115:intron 20.0%
!! TTGTTATAAGATAAGTCTAA+GGG + chr5.2:17961832-17961851 MS.gene001115:intron 20.0%
!!! GAATAGTTATTTAGTTTCAA+TGG + chr5.2:17960067-17960086 MS.gene001115:intron 20.0%
!!! TATTCATATCTTATGCTTTT+AGG + chr5.2:17960723-17960742 MS.gene001115:intron 20.0%
!!! TGTTTTTGTGTTATATCAAA+TGG + chr5.2:17961466-17961485 MS.gene001115:intron 20.0%
!!! TTATATCAAATGGTTTTCTT+TGG + chr5.2:17961476-17961495 MS.gene001115:intron 20.0%
!!! TTTGTTATAAGATAAGTCTA+AGG + chr5.2:17961831-17961850 MS.gene001115:intron 20.0%
! AAAAGGATGACATATATGTA+TGG + chr5.2:17960928-17960947 MS.gene001115:CDS 25.0%
! AAACAAGATAAGAAATGTGA+TGG + chr5.2:17961256-17961275 MS.gene001115:CDS 25.0%
! ATAACGTATAACCTATAGAT+TGG - chr5.2:17961720-17961739 None:intergenic 25.0%
! CATAGTGTAATTAATGCTTA+AGG - chr5.2:17960119-17960138 None:intergenic 25.0%
! TATGCTATAAGTGCTTAATT+AGG + chr5.2:17962068-17962087 MS.gene001115:intron 25.0%
! TCACTTAACTCATTTATGTT+AGG + chr5.2:17960277-17960296 MS.gene001115:intron 25.0%
! TGAAATGAAGTATGTAATGT+TGG + chr5.2:17962177-17962196 MS.gene001115:CDS 25.0%
! TGTTATAAGATAAGTCTAAG+GGG + chr5.2:17961833-17961852 MS.gene001115:intron 25.0%
! TTCATAAACACATAACCTTA+TGG - chr5.2:17961446-17961465 None:intergenic 25.0%
!! AATTTTCATCCATTAACTGA+TGG + chr5.2:17960697-17960716 MS.gene001115:intron 25.0%
!! ATGGAAAAGTACAAAAAATC+AGG + chr5.2:17961077-17961096 MS.gene001115:CDS 25.0%
!! ATTTTCATCCATTAACTGAT+GGG + chr5.2:17960698-17960717 MS.gene001115:intron 25.0%
!! TATTTTCTTAAACTATCACG+AGG + chr5.2:17961737-17961756 MS.gene001115:intron 25.0%
!!! ATGAATGTTGTTTCATCTTA+TGG + chr5.2:17961338-17961357 MS.gene001115:CDS 25.0%
!!! GATTTTTTGTACTTTTCCAT+TGG - chr5.2:17961077-17961096 None:intergenic 25.0%
!!! GCGTTTTGAAAATCTTATTT+AGG - chr5.2:17962112-17962131 None:intergenic 25.0%
AATTACCAAATTCTGTCCAT+GGG - chr5.2:17960496-17960515 None:intergenic 30.0%
AGTTTCAAACATACCAATCA+TGG - chr5.2:17961412-17961431 None:intergenic 30.0%
ATGGATATGAATACAGCTTA+TGG + chr5.2:17961275-17961294 MS.gene001115:CDS 30.0%
CATTCTTTCCTCTCAAAAAT+CGG - chr5.2:17959632-17959651 None:intergenic 30.0%
GAAGTATGTAATGTTGGAAA+TGG + chr5.2:17962183-17962202 MS.gene001115:CDS 30.0%
GTCTTTAAATCTGGAAACAA+TGG + chr5.2:17959306-17959325 MS.gene001115:CDS 30.0%
GTGTTACATGAATAAATGAC+AGG + chr5.2:17959822-17959841 MS.gene001115:intron 30.0%
TAATTAATGCTTAAGGAGTG+TGG - chr5.2:17960112-17960131 None:intergenic 30.0%
TACCTATAGACTTACTTTGT+TGG + chr5.2:17959592-17959611 MS.gene001115:CDS 30.0%
TCAATTGTAACTAGATGTGT+CGG - chr5.2:17960175-17960194 None:intergenic 30.0%
TGAATATTCCCATCAGTTAA+TGG - chr5.2:17960709-17960728 None:intergenic 30.0%
TGAATCAAGTGATTTCTGAA+TGG - chr5.2:17959349-17959368 None:intergenic 30.0%
TGACATATATGTATGGCAAA+AGG + chr5.2:17960935-17960954 MS.gene001115:CDS 30.0%
TGGTACAGGTATGTAATATA+TGG + chr5.2:17959716-17959735 MS.gene001115:intron 30.0%
TGTTGAGAAAGAGAAGATAT+TGG + chr5.2:17962327-17962346 MS.gene001115:CDS 30.0%
TTCCAACAAAGTAAGTCTAT+AGG - chr5.2:17959597-17959616 None:intergenic 30.0%
! AATCTTATTTAGGCCAAGTT+TGG - chr5.2:17962102-17962121 None:intergenic 30.0%
! TCATATCTTATGCTTTTAGG+TGG + chr5.2:17960726-17960745 MS.gene001115:intron 30.0%
! TGCTTGTTAATCCAATCATA+TGG - chr5.2:17959854-17959873 None:intergenic 30.0%
! TTAGGTTGTTTATCCAAACT+TGG + chr5.2:17962086-17962105 MS.gene001115:intron 30.0%
!! TAATCAGCATTGGTTGATAA+AGG + chr5.2:17959880-17959899 MS.gene001115:CDS 30.0%
!!! TGTTGATTGAGTTTTGAGAA+TGG + chr5.2:17959540-17959559 MS.gene001115:intron 30.0%
AAATTTCAATTTCCTGGTGG+AGG + chr5.2:17959911-17959930 MS.gene001115:CDS 35.0%
AATGGATGATTTCACAGAGA+TGG + chr5.2:17959558-17959577 MS.gene001115:intron 35.0%
ACAACATTCATAACCCACAA+AGG - chr5.2:17961329-17961348 None:intergenic 35.0%
ACATATTCACCAACACCATT+AGG - chr5.2:17959947-17959966 None:intergenic 35.0%
ACTATGTTTCCTAATGGTGT+TGG + chr5.2:17959935-17959954 MS.gene001115:CDS 35.0%
ATCACTATCATTGTTCTGTG+TGG + chr5.2:17959261-17959280 MS.gene001115:CDS 35.0%
ATGTAATGTTGGAAATGGAC+CGG + chr5.2:17962188-17962207 MS.gene001115:CDS 35.0%
CAAAGAGTAGAGATGAATGT+TGG + chr5.2:17959696-17959715 MS.gene001115:CDS 35.0%
CAACATTCATCTCTACTCTT+TGG - chr5.2:17959698-17959717 None:intergenic 35.0%
CCATATCAAAGGAGTTTGAA+GGG - chr5.2:17960451-17960470 None:intergenic 35.0%
CTTGATCAATGATCCTTTGT+GGG + chr5.2:17961313-17961332 MS.gene001115:CDS 35.0%
GAAAGGATTTCACTTGTTCA+AGG + chr5.2:17961146-17961165 MS.gene001115:CDS 35.0%
GAATTACCAAATTCTGTCCA+TGG - chr5.2:17960497-17960516 None:intergenic 35.0%
GAGAAATTTCAATTTCCTGG+TGG + chr5.2:17959908-17959927 MS.gene001115:CDS 35.0%
GATAATCATTGCTGCATTCA+GGG - chr5.2:17959416-17959435 None:intergenic 35.0%
GATATGAATACAGCTTATGG+TGG + chr5.2:17961278-17961297 MS.gene001115:CDS 35.0%
GGAGAGAAATTTCAATTTCC+TGG + chr5.2:17959905-17959924 MS.gene001115:CDS 35.0%
GTCAAACTGTTCCAATCTAT+AGG + chr5.2:17961706-17961725 MS.gene001115:intron 35.0%
TCAAACATACCAATCATGGA+AGG - chr5.2:17961408-17961427 None:intergenic 35.0%
TCAGTCATGATAACAGTAAG+TGG + chr5.2:17961186-17961205 MS.gene001115:CDS 35.0%
TGAACAAGTGAAATCCTTTC+AGG - chr5.2:17961146-17961165 None:intergenic 35.0%
TGATAATCATTGCTGCATTC+AGG - chr5.2:17959417-17959436 None:intergenic 35.0%
! AAAACTACAGGGAGTGTATT+AGG - chr5.2:17961365-17961384 None:intergenic 35.0%
! ATTTATGTTAGGTTGCTAGC+TGG + chr5.2:17960288-17960307 MS.gene001115:intron 35.0%
! GAAGAATTCGGTGAATTTCT+TGG - chr5.2:17960761-17960780 None:intergenic 35.0%
! TCATGATGACTTGTGCTATT+AGG + chr5.2:17961513-17961532 MS.gene001115:intron 35.0%
! TGTGGTTTTTCATTCTACCT+TGG + chr5.2:17959279-17959298 MS.gene001115:CDS 35.0%
! TTCTTATCTTGTTTGTGCCA+AGG - chr5.2:17961250-17961269 None:intergenic 35.0%
! TTTATGTTAGGTTGCTAGCT+GGG + chr5.2:17960289-17960308 MS.gene001115:intron 35.0%
!! CTTAATTTGCAAAGAACCTG+AGG - chr5.2:17959382-17959401 None:intergenic 35.0%
AAAGAACCTGAGGATTGCTT+AGG - chr5.2:17959372-17959391 None:intergenic 40.0%
AAGAGATAACCATGAAGCTC+AGG + chr5.2:17960358-17960377 MS.gene001115:CDS 40.0%
AATACCTTTGGATCTGTGCA+TGG - chr5.2:17959450-17959469 None:intergenic 40.0%
ACAGGAATGTGCCATATGAT+TGG + chr5.2:17959840-17959859 MS.gene001115:intron 40.0%
AGAATCCATCAGCATGAAGT+AGG - chr5.2:17961574-17961593 None:intergenic 40.0%
AGATGACACCAAGAATTGCT+GGG - chr5.2:17960409-17960428 None:intergenic 40.0%
AGCAGAAGTCTAATCAGCAT+TGG + chr5.2:17959870-17959889 MS.gene001115:CDS 40.0%
ATCAGCATGAAGTAGGTCAT+AGG - chr5.2:17961567-17961586 None:intergenic 40.0%
CAAATTCTGTCCATGGGATA+AGG - chr5.2:17960490-17960509 None:intergenic 40.0%
CAAATTGAACCTGAGCTTCA+TGG - chr5.2:17960370-17960389 None:intergenic 40.0%
CAGATTTAAAGACTCCACCA+AGG - chr5.2:17959299-17959318 None:intergenic 40.0%
CCACAAAGGATCATTGATCA+AGG - chr5.2:17961315-17961334 None:intergenic 40.0%
CCCTTCAAACTCCTTTGATA+TGG + chr5.2:17960448-17960467 MS.gene001115:CDS 40.0%
CCTTGATCAATGATCCTTTG+TGG + chr5.2:17961312-17961331 MS.gene001115:CDS 40.0%
CTGCATTCAGGGAAACTAAA+GGG - chr5.2:17959405-17959424 None:intergenic 40.0%
CTTATCCCATGGACAGAATT+TGG + chr5.2:17960488-17960507 MS.gene001115:CDS 40.0%
CTTGGTGGAGTCTTTAAATC+TGG + chr5.2:17959297-17959316 MS.gene001115:CDS 40.0%
CTTTCCTCTCAAAAATCGGA+GGG - chr5.2:17959628-17959647 None:intergenic 40.0%
GCCATATCAAAGGAGTTTGA+AGG - chr5.2:17960452-17960471 None:intergenic 40.0%
GCTTGTTTGAGCTTATCTAC+TGG + chr5.2:17961868-17961887 MS.gene001115:intron 40.0%
GTAGAGATGAATGTTGGTAC+AGG + chr5.2:17959702-17959721 MS.gene001115:CDS 40.0%
GTCAGAACTGCAATTGATAC+TGG + chr5.2:17960010-17960029 MS.gene001115:CDS 40.0%
GTTAGTGTCAGTGTTGTGTA+TGG + chr5.2:17960235-17960254 MS.gene001115:intron 40.0%
TATGACCTACTTCATGCTGA+TGG + chr5.2:17961566-17961585 MS.gene001115:CDS 40.0%
TCAAAGGAGTTTGAAGGGAA+AGG - chr5.2:17960446-17960465 None:intergenic 40.0%
TCACAGAGATGGAGAAAGTA+CGG + chr5.2:17959569-17959588 MS.gene001115:intron 40.0%
TCTTTCCTCTCAAAAATCGG+AGG - chr5.2:17959629-17959648 None:intergenic 40.0%
TGAAGTAGGTCATAGGTTCT+AGG - chr5.2:17961560-17961579 None:intergenic 40.0%
TGAGCTTCATGGTTATCTCT+TGG - chr5.2:17960359-17960378 None:intergenic 40.0%
TGATCCCAGGAATCAAAGAT+GGG + chr5.2:17959984-17960003 MS.gene001115:CDS 40.0%
TTAATGCAAGATCTGATCCC+AGG + chr5.2:17959971-17959990 MS.gene001115:CDS 40.0%
TTATCGGTACCTTCCATGAT+TGG + chr5.2:17961396-17961415 MS.gene001115:CDS 40.0%
! ACTGCAATTGATACTGGTTG+TGG + chr5.2:17960016-17960035 MS.gene001115:CDS 40.0%
! ATCATAGCAAGCGTTGTCTT+TGG - chr5.2:17960961-17960980 None:intergenic 40.0%
! CTGCAATTGATACTGGTTGT+GGG + chr5.2:17960017-17960036 MS.gene001115:CDS 40.0%
! GGTTTTTCATTCTACCTTGG+TGG + chr5.2:17959282-17959301 MS.gene001115:CDS 40.0%
! TGCAATTGATACTGGTTGTG+GGG + chr5.2:17960018-17960037 MS.gene001115:CDS 40.0%
! TTATGTTAGGTTGCTAGCTG+GGG + chr5.2:17960290-17960309 MS.gene001115:intron 40.0%
!! AATCATGGAAGGTACCGATA+AGG - chr5.2:17961397-17961416 None:intergenic 40.0%
!! CAGCATTGGTTGATAAAGGA+AGG + chr5.2:17959884-17959903 MS.gene001115:CDS 40.0%
!! GGAGGTACTATGTTTCCTAA+TGG + chr5.2:17959929-17959948 MS.gene001115:CDS 40.0%
!! TTCAACCTTTGAGGCCATTT+CGG - chr5.2:17961116-17961135 None:intergenic 40.0%
AACGGTGGAAGAGCAAAGAT+CGG + chr5.2:17960851-17960870 MS.gene001115:CDS 45.0%
AAGAAGTTGTTGCCTGACCT+TGG + chr5.2:17961230-17961249 MS.gene001115:CDS 45.0%
ACTGACCCATCTTTGATTCC+TGG - chr5.2:17959992-17960011 None:intergenic 45.0%
ACTGAGTGCATATTCACCTG+TGG - chr5.2:17961610-17961629 None:intergenic 45.0%
AGCAGTGATACTTGCGTGTT+TGG + chr5.2:17960140-17960159 MS.gene001115:intron 45.0%
ATTCACCGAATTCTTCGTCC+CGG + chr5.2:17960765-17960784 MS.gene001115:CDS 45.0%
CCGCAAAATAACTCGACTCT+CGG - chr5.2:17962243-17962262 None:intergenic 45.0%
CGCTTGTTTCGTTGTTCCAA+TGG + chr5.2:17961058-17961077 MS.gene001115:CDS 45.0%
CTACTCTTTGGCCATCTGAT+TGG - chr5.2:17959686-17959705 None:intergenic 45.0%
CTGACCCATCTTTGATTCCT+GGG - chr5.2:17959991-17960010 None:intergenic 45.0%
CTGATCCCAGGAATCAAAGA+TGG + chr5.2:17959983-17960002 MS.gene001115:CDS 45.0%
GACAAAACCCAAAATCCTCC+GGG - chr5.2:17960786-17960805 None:intergenic 45.0%
GAGATGACACCAAGAATTGC+TGG - chr5.2:17960410-17960429 None:intergenic 45.0%
GATAAGTCTAAGGGGCTGTT+TGG + chr5.2:17961841-17961860 MS.gene001115:intron 45.0%
GATTCACCTAAGCAATCCTC+AGG + chr5.2:17959363-17959382 MS.gene001115:CDS 45.0%
GCCATTACAACTATGGCGAA+GGG + chr5.2:17962265-17962284 MS.gene001115:CDS 45.0%
GCTGCATTCAGGGAAACTAA+AGG - chr5.2:17959406-17959425 None:intergenic 45.0%
GGACAAAACCCAAAATCCTC+CGG - chr5.2:17960787-17960806 None:intergenic 45.0%
GGAGCAATGAGCCATATCAA+AGG - chr5.2:17960462-17960481 None:intergenic 45.0%
GGTGCAACATTCAACCTTTG+AGG - chr5.2:17961125-17961144 None:intergenic 45.0%
GGTTGAATGTTGCACCTGAA+AGG + chr5.2:17961129-17961148 MS.gene001115:CDS 45.0%
GTTACAAGCCTCCAATCAGA+TGG + chr5.2:17959672-17959691 MS.gene001115:CDS 45.0%
TACTCCATGCACAGATCCAA+AGG + chr5.2:17959443-17959462 MS.gene001115:CDS 45.0%
TCCCTTCGCCATAGTTGTAA+TGG - chr5.2:17962269-17962288 None:intergenic 45.0%
TCTCAAAAATCGGAGGGCAA+TGG - chr5.2:17959622-17959641 None:intergenic 45.0%
TGCCATTACAACTATGGCGA+AGG + chr5.2:17962264-17962283 MS.gene001115:CDS 45.0%
TGCGGATGCCATTACAACTA+TGG + chr5.2:17962258-17962277 MS.gene001115:CDS 45.0%
TGGTATGCCAGAAAAAGCTG+TGG + chr5.2:17962347-17962366 MS.gene001115:CDS 45.0%
TTTGGAGGATAGGTGTCTCT+AGG - chr5.2:17960990-17961009 None:intergenic 45.0%
! AGACTGTCGTCACATTTTGG+AGG - chr5.2:17961005-17961024 None:intergenic 45.0%
! ATCTTGTTTGTGCCAAGGTC+AGG - chr5.2:17961245-17961264 None:intergenic 45.0%
! CATCTTGATCCTGAGTTGGA+TGG - chr5.2:17962376-17962395 None:intergenic 45.0%
! GTCAGAGATCGGTTCTTGTT+CGG - chr5.2:17959234-17959253 None:intergenic 45.0%
! GTTCAATTTGCTCTTGAGCG+TGG + chr5.2:17960380-17960399 MS.gene001115:CDS 45.0%
! TCGAGACTGTCGTCACATTT+TGG - chr5.2:17961008-17961027 None:intergenic 45.0%
!! ATTGCCCTCCGATTTTTGAG+AGG + chr5.2:17959621-17959640 MS.gene001115:CDS 45.0%
!! CCGAGAGTCGAGTTATTTTG+CGG + chr5.2:17962240-17962259 MS.gene001115:CDS 45.0%
!! GTCGTCACATTTTGGAGGAT+AGG - chr5.2:17961000-17961019 None:intergenic 45.0%
!! GTTTTCGATCGAGGCCTTAT+CGG + chr5.2:17961380-17961399 MS.gene001115:CDS 45.0%
!!! GGAGGATTTTGGGTTTTGTC+CGG + chr5.2:17960786-17960805 MS.gene001115:CDS 45.0%
!!! ATTGTTTTTTAAATAATTAT+TGG + chr5.2:17960203-17960222 MS.gene001115:intron 5.0%
ACAACGAAACAAGCGCGAAG+CGG - chr5.2:17961053-17961072 None:intergenic 50.0%
ACATGCCGAAATGGCCTCAA+AGG + chr5.2:17961108-17961127 MS.gene001115:CDS 50.0%
AGGCCTCGATCGAAAACTAC+AGG - chr5.2:17961377-17961396 None:intergenic 50.0%
ATCCTCCGGGACGAAGAATT+CGG - chr5.2:17960773-17960792 None:intergenic 50.0%
ATTGGAGGCTTGTAACCAGG+AGG - chr5.2:17959668-17959687 None:intergenic 50.0%
CAAGAACCGATCTCTGACTG+CGG + chr5.2:17959236-17959255 MS.gene001115:CDS 50.0%
CACCAGTCAACTATGAGCGT+AGG + chr5.2:17960811-17960830 MS.gene001115:CDS 50.0%
CACCTACGCTCATAGTTGAC+TGG - chr5.2:17960816-17960835 None:intergenic 50.0%
CAGTCAACTATGAGCGTAGG+TGG + chr5.2:17960814-17960833 MS.gene001115:CDS 50.0%
CGTGGTATCCCAGCAATTCT+TGG + chr5.2:17960398-17960417 MS.gene001115:CDS 50.0%
CTACGCTCATAGTTGACTGG+TGG - chr5.2:17960813-17960832 None:intergenic 50.0%
CTATGGCGAAGGGAATGAGA+TGG + chr5.2:17962275-17962294 MS.gene001115:CDS 50.0%
CTCTTTGGCCATCTGATTGG+AGG - chr5.2:17959683-17959702 None:intergenic 50.0%
CTGATTGGAGGCTTGTAACC+AGG - chr5.2:17959671-17959690 None:intergenic 50.0%
GGAAACATAGTACCTCCACC+AGG - chr5.2:17959926-17959945 None:intergenic 50.0%
GGAGTGTACCATGCTGAATC+TGG - chr5.2:17961032-17961051 None:intergenic 50.0%
GGCCTCGATCGAAAACTACA+GGG - chr5.2:17961376-17961395 None:intergenic 50.0%
GTCTCGAACCAGATTCAGCA+TGG + chr5.2:17961021-17961040 MS.gene001115:CDS 50.0%
TCTTCACTGCTGAAAGCCAC+AGG + chr5.2:17961591-17961610 MS.gene001115:CDS 50.0%
! CTCATAGTTGACTGGTGGAC+CGG - chr5.2:17960808-17960827 None:intergenic 50.0%
! CTCCCTGTAGTTTTCGATCG+AGG + chr5.2:17961371-17961390 MS.gene001115:CDS 50.0%
! TCTTCGTCCCGGAGGATTTT+GGG + chr5.2:17960776-17960795 MS.gene001115:CDS 50.0%
! TGTCCATGGGATAAGGCATC+TGG - chr5.2:17960483-17960502 None:intergenic 50.0%
! TTCTTCGTCCCGGAGGATTT+TGG + chr5.2:17960775-17960794 MS.gene001115:CDS 50.0%
!! ATGGCTGCCACAGCTTTTTC+TGG - chr5.2:17962357-17962376 None:intergenic 50.0%
AACTATGAGCGTAGGTGGCG+CGG + chr5.2:17960819-17960838 MS.gene001115:CDS 55.0%
GCCATTTCGGCATGTACGTG+AGG - chr5.2:17961103-17961122 None:intergenic 55.0%
GCCTCACGTACATGCCGAAA+TGG + chr5.2:17961099-17961118 MS.gene001115:CDS 55.0%
GCTCCAGATGCCTTATCCCA+TGG + chr5.2:17960477-17960496 MS.gene001115:CDS 55.0%
TGATCGCCGCAGTCAGAGAT+CGG - chr5.2:17959245-17959264 None:intergenic 55.0%
TGCTTAGTTCCTCCTCCTCC+TGG + chr5.2:17959650-17959669 MS.gene001115:CDS 55.0%
! ATCGGTTCTTGTTCGGCTGG+TGG - chr5.2:17959227-17959246 None:intergenic 55.0%
! ATGGACCGGATTTTGCGACC+AGG + chr5.2:17962202-17962221 MS.gene001115:CDS 55.0%
! GAGATCGGTTCTTGTTCGGC+TGG - chr5.2:17959230-17959249 None:intergenic 55.0%
! TAGCTGGGGTGGTGACTTGT+TGG + chr5.2:17960304-17960323 MS.gene001115:CDS 55.0%
! TGTTAGGTTGCTAGCTGGGG+TGG + chr5.2:17960293-17960312 MS.gene001115:intron 55.0%
!! GGTGGTGACTTGTTGGATCG+CGG + chr5.2:17960311-17960330 MS.gene001115:CDS 55.0%
CACCGAATTCTTCGTCCCGG+AGG + chr5.2:17960768-17960787 MS.gene001115:CDS 60.0%
CTGTGGCAGCCATCCAACTC+AGG + chr5.2:17962364-17962383 MS.gene001115:CDS 60.0%
GGAGGCTTGTAACCAGGAGG+AGG - chr5.2:17959665-17959684 None:intergenic 60.0%
GGCTTGTAACCAGGAGGAGG+AGG - chr5.2:17959662-17959681 None:intergenic 60.0%
GTGGCGCGGATGGAACACAA+CGG + chr5.2:17960833-17960852 MS.gene001115:CDS 60.0%
! ACCGGATTTTGCGACCAGGC+GGG + chr5.2:17962206-17962225 MS.gene001115:CDS 60.0%
! GACCGGATTTTGCGACCAGG+CGG + chr5.2:17962205-17962224 MS.gene001115:CDS 60.0%
ATGAGCGTAGGTGGCGCGGA+TGG + chr5.2:17960823-17960842 MS.gene001115:CDS 65.0%
CGGATTATAGCGTGCCCGCC+TGG - chr5.2:17962223-17962242 None:intergenic 65.0%
GCCCGCCTGGTCGCAAAATC+CGG - chr5.2:17962210-17962229 None:intergenic 65.0%
GCGCGGATGGAACACAACGG+TGG + chr5.2:17960836-17960855 MS.gene001115:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 17959198 17962396 17959198 ID=MS.gene001115
chr5.2 mRNA 17959198 17962396 17959198 ID=MS.gene001115.t1;Parent=MS.gene001115
chr5.2 exon 17959198 17959464 17959198 ID=MS.gene001115.t1.exon1;Parent=MS.gene001115.t1
chr5.2 CDS 17959198 17959464 17959198 ID=cds.MS.gene001115.t1;Parent=MS.gene001115.t1
chr5.2 exon 17959575 17959723 17959575 ID=MS.gene001115.t1.exon2;Parent=MS.gene001115.t1
chr5.2 CDS 17959575 17959723 17959575 ID=cds.MS.gene001115.t1;Parent=MS.gene001115.t1
chr5.2 exon 17959844 17960039 17959844 ID=MS.gene001115.t1.exon3;Parent=MS.gene001115.t1
chr5.2 CDS 17959844 17960039 17959844 ID=cds.MS.gene001115.t1;Parent=MS.gene001115.t1
chr5.2 exon 17960299 17960509 17960299 ID=MS.gene001115.t1.exon4;Parent=MS.gene001115.t1
chr5.2 CDS 17960299 17960509 17960299 ID=cds.MS.gene001115.t1;Parent=MS.gene001115.t1
chr5.2 exon 17960745 17961417 17960745 ID=MS.gene001115.t1.exon5;Parent=MS.gene001115.t1
chr5.2 CDS 17960745 17961417 17960745 ID=cds.MS.gene001115.t1;Parent=MS.gene001115.t1
chr5.2 exon 17961535 17961612 17961535 ID=MS.gene001115.t1.exon6;Parent=MS.gene001115.t1
chr5.2 CDS 17961535 17961612 17961535 ID=cds.MS.gene001115.t1;Parent=MS.gene001115.t1
chr5.2 exon 17962174 17962396 17962174 ID=MS.gene001115.t1.exon7;Parent=MS.gene001115.t1
chr5.2 CDS 17962174 17962396 17962174 ID=cds.MS.gene001115.t1;Parent=MS.gene001115.t1
Gene Sequence

>MS.gene001115

ATGAAGCATAAGGATGGAAAACTGATCCACCAGCCGAACAAGAACCGATCTCTGACTGCGGCGATCACTATCATTGTTCTGTGTGGTTTTTCATTCTACCTTGGTGGAGTCTTTAAATCTGGAAACAATGGTGTTGATGTCATCAACACCATTCAGAAATCACTTGATTCACCTAAGCAATCCTCAGGTTCTTTGCAAATTAAGCCCTTTAGTTTCCCTGAATGCAGCAATGATTATCAAGACTATACTCCATGCACAGATCCAAAGGTATTAATTAATACTAATAGTTTTCTACAAAAAATTTGATGTTTGGATTTTTTGTAGAAGAAAATTTCATTATTTTGTTGATTGAGTTTTGAGAATGGATGATTTCACAGAGATGGAGAAAGTACGGTACCTATAGACTTACTTTGTTGGAACGCCATTGCCCTCCGATTTTTGAGAGGAAAGAATGCTTAGTTCCTCCTCCTCCTGGTTACAAGCCTCCAATCAGATGGCCAAAGAGTAGAGATGAATGTTGGTACAGGTATGTAATATATGGTTTATAAGTTGAAATAATTATAGTTTGAATTGATTTTAAGTTGATTGCTACATCGTATATTGTTGTTCAAGTTTTTAATCATTGTGTTACATGAATAAATGACAGGAATGTGCCATATGATTGGATTAACAAGCAGAAGTCTAATCAGCATTGGTTGATAAAGGAAGGAGAGAAATTTCAATTTCCTGGTGGAGGTACTATGTTTCCTAATGGTGTTGGTGAATATGTTGATTTAATGCAAGATCTGATCCCAGGAATCAAAGATGGGTCAGTCAGAACTGCAATTGATACTGGTTGTGGGGTGAGTTTTATCCTTCATTTTACTTTTGAATAGTTATTTAGTTTCAATGGCAATGCAAATTAAAATTCTCCACACTCCTTAAGCATTAATTACACTATGTAGCAGTGATACTTGCGTGTTTGGTGTCTAACACCGACACATCTAGTTACAATTGATCACTTTCATTGTTTTTTAAATAATTATTGGTCTCTATGTGTTAGTGTCAGTGTTGTGTATGGTGTATCTGTCAATTAATATTCACTTAACTCATTTATGTTAGGTTGCTAGCTGGGGTGGTGACTTGTTGGATCGCGGCGTTCTAACAATTTCTCTCGCGCCAAGAGATAACCATGAAGCTCAGGTTCAATTTGCTCTTGAGCGTGGTATCCCAGCAATTCTTGGTGTCATCTCTACACAAAGACTTCCTTTCCCTTCAAACTCCTTTGATATGGCTCATTGCTCCAGATGCCTTATCCCATGGACAGAATTTGGTAATTCTTCAATGCATTTTAAAATTTTCAGCTCTTAAAACAGATTTTTTTTTTTATTTTTTTTTTTGCTTTCTGTTTATGCAATGTTTTCATGAACTTTATCAACATAATAAAACAGTTTCATTCATCTAAGTTAGTAGTAATTTTCATAAACTGTCTTGTTTAGAGCTGATATAAGTTCAGTCGAAATTTTCATCCATTAACTGATGGGAATATTCATATCTTATGCTTTTAGGTGGAATTTATCTCCAAGAAATTCACCGAATTCTTCGTCCCGGAGGATTTTGGGTTTTGTCCGGTCCACCAGTCAACTATGAGCGTAGGTGGCGCGGATGGAACACAACGGTGGAAGAGCAAAGATCGGATTATGAAAAGCTACAAGATTTGCTCACATCAATGTGCTTCAAATTATACAACAAAAAGGATGACATATATGTATGGCAAAAGGCCAAAGACAACGCTTGCTATGATAAGCTTCCTAGAGACACCTATCCTCCAAAATGTGACGACAGTCTCGAACCAGATTCAGCATGGTACACTCCGCTTCGCGCTTGTTTCGTTGTTCCAATGGAAAAGTACAAAAAATCAGGCCTCACGTACATGCCGAAATGGCCTCAAAGGTTGAATGTTGCACCTGAAAGGATTTCACTTGTTCAAGGTTCTAGTTCTAGTACTTTCAGTCATGATAACAGTAAGTGGAAAAAGCGCATTCAGCACTACAAGAAGTTGTTGCCTGACCTTGGCACAAACAAGATAAGAAATGTGATGGATATGAATACAGCTTATGGTGGTTTCGCTGCTTCCTTGATCAATGATCCTTTGTGGGTTATGAATGTTGTTTCATCTTATGGTCCTAATACACTCCCTGTAGTTTTCGATCGAGGCCTTATCGGTACCTTCCATGATTGGTATGTTTGAAACTTTAAATATGAACCATAAGGTTATGTGTTTATGAATGTTTTTGTGTTATATCAAATGGTTTTCTTTGGTATTGATTTGAATTTCATGATGACTTGTGCTATTAGGTGTGAAGCTTTTTCAACATATCCTAGAACCTATGACCTACTTCATGCTGATGGATTCTTCACTGCTGAAAGCCACAGGTGAATATGCACTCAGTCAATACTTCGATTTTGACAGCTTAATTAATCACTTCTTGAATAAGTACTAATAATATAAACACTTATAATAAGATGGTCAAACTGTTCCAATCTATAGGTTATACGTTATTTTCTTAAACTATCACGAGGAGCATACTGAAAACAGCTTATCAAATCATAAGTTAATTTTATAAGTTCTGTTGAACACTTTCACAGTTGCTTTTGTTATAAGATAAGTCTAAGGGGCTGTTTGGATTCGCTTGTTTGAGCTTATCTACTGGCATAAACAGTTGCTAGACTGTTTGAGAGAGCTTTCTGAAACAACTTATAACATGTCAATAAGTTGTTTTTAGTTTATTTTTATAAGCTCTCTATTATAGCTTATGAAAATAAGTTGACTTTATTTTATCTTTTATAACAGAAAGTGCTTATACATAAGCACTTACATGACAAAATCTTATGCTATAAGTGCTTAATTAGGTTGTTTATCCAAACTTGGCCTAAATAAGATTTTCAAAACGCACTCATTATGAGATCGCTCTAACAGTAGTTGTTACTTTGCAGATGTGAAATGAAGTATGTAATGTTGGAAATGGACCGGATTTTGCGACCAGGCGGGCACGCTATAATCCGAGAGTCGAGTTATTTTGCGGATGCCATTACAACTATGGCGAAGGGAATGAGATGGATATGTCACAAAGAAAACACTGAGTTTGATGTTGAGAAAGAGAAGATATTGGTATGCCAGAAAAAGCTGTGGCAGCCATCCAACTCAGGATCAAGATGA
Protein sequence

>MS.gene001115.t1

MKHKDGKLIHQPNKNRSLTAAITIIVLCGFSFYLGGVFKSGNNGVDVINTIQKSLDSPKQSSGSLQIKPFSFPECSNDYQDYTPCTDPKRWRKYGTYRLTLLERHCPPIFERKECLVPPPPGYKPPIRWPKSRDECWYRNVPYDWINKQKSNQHWLIKEGEKFQFPGGGTMFPNGVGEYVDLMQDLIPGIKDGSVRTAIDTGCGVASWGGDLLDRGVLTISLAPRDNHEAQVQFALERGIPAILGVISTQRLPFPSNSFDMAHCSRCLIPWTEFGGIYLQEIHRILRPGGFWVLSGPPVNYERRWRGWNTTVEEQRSDYEKLQDLLTSMCFKLYNKKDDIYVWQKAKDNACYDKLPRDTYPPKCDDSLEPDSAWYTPLRACFVVPMEKYKKSGLTYMPKWPQRLNVAPERISLVQGSSSSTFSHDNSKWKKRIQHYKKLLPDLGTNKIRNVMDMNTAYGGFAASLINDPLWVMNVVSSYGPNTLPVVFDRGLIGTFHDWCEAFSTYPRTYDLLHADGFFTAESHRCEMKYVMLEMDRILRPGGHAIIRESSYFADAITTMAKGMRWICHKENTEFDVEKEKILVCQKKLWQPSNSGSR