Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006849.t1 | XP_024637772.1 | 97.1 | 619 | 10 | 1 | 1 | 611 | 1 | 619 | 0.00E+00 | 1230.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006849.t1 | Q3EC77 | 67.9 | 613 | 188 | 5 | 1 | 611 | 1 | 606 | 5.5e-256 | 884.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006849.t1 | G7JHH8 | 96.2 | 611 | 18 | 1 | 1 | 611 | 1 | 606 | 0.0e+00 | 1198.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene022470 | MS.gene006849 | PPI |
MS.gene006849 | MS.gene001115 | PPI |
MS.gene72842 | MS.gene006849 | PPI |
MS.gene006849 | MS.gene056541 | PPI |
MS.gene82964 | MS.gene006849 | PPI |
MS.gene067899 | MS.gene006849 | PPI |
MS.gene028062 | MS.gene006849 | PPI |
MS.gene070096 | MS.gene006849 | PPI |
MS.gene006849 | MS.gene035877 | PPI |
MS.gene010201 | MS.gene006849 | PPI |
MS.gene83416 | MS.gene006849 | PPI |
MS.gene35581 | MS.gene006849 | PPI |
MS.gene29812 | MS.gene006849 | PPI |
MS.gene066327 | MS.gene006849 | PPI |
MS.gene043946 | MS.gene006849 | PPI |
MS.gene98308 | MS.gene006849 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006849.t1 | MTR_4g083030 | 96.236 | 611 | 18 | 1 | 1 | 611 | 1 | 606 | 0.0 | 1212 |
MS.gene006849.t1 | MTR_3g074780 | 54.485 | 602 | 248 | 10 | 26 | 611 | 99 | 690 | 0.0 | 673 |
MS.gene006849.t1 | MTR_5g064080 | 52.181 | 619 | 260 | 10 | 12 | 611 | 71 | 672 | 0.0 | 664 |
MS.gene006849.t1 | MTR_1g075900 | 35.130 | 538 | 297 | 11 | 84 | 598 | 89 | 597 | 2.01e-103 | 326 |
MS.gene006849.t1 | MTR_1g442840 | 36.105 | 493 | 268 | 8 | 114 | 587 | 11 | 475 | 2.24e-103 | 323 |
MS.gene006849.t1 | MTR_1g069785 | 32.646 | 582 | 341 | 12 | 52 | 606 | 25 | 582 | 4.09e-103 | 325 |
MS.gene006849.t1 | MTR_1g442840 | 34.725 | 527 | 293 | 9 | 84 | 587 | 90 | 588 | 1.69e-102 | 324 |
MS.gene006849.t1 | MTR_5g080720 | 34.838 | 554 | 299 | 15 | 81 | 607 | 120 | 638 | 4.50e-101 | 321 |
MS.gene006849.t1 | MTR_8g100075 | 32.275 | 567 | 319 | 16 | 73 | 608 | 87 | 619 | 6.01e-99 | 315 |
MS.gene006849.t1 | MTR_3g068990 | 34.539 | 553 | 302 | 15 | 84 | 610 | 151 | 669 | 1.25e-98 | 315 |
MS.gene006849.t1 | MTR_1g051055 | 33.713 | 614 | 346 | 19 | 22 | 608 | 23 | 602 | 3.21e-97 | 310 |
MS.gene006849.t1 | MTR_7g076150 | 32.258 | 558 | 323 | 10 | 75 | 610 | 64 | 588 | 1.42e-95 | 305 |
MS.gene006849.t1 | MTR_8g055840 | 32.796 | 558 | 326 | 11 | 72 | 608 | 70 | 599 | 5.52e-95 | 304 |
MS.gene006849.t1 | MTR_8g071280 | 33.519 | 540 | 310 | 13 | 89 | 606 | 73 | 585 | 2.67e-94 | 301 |
MS.gene006849.t1 | MTR_8g432680 | 32.911 | 553 | 315 | 15 | 85 | 608 | 104 | 629 | 1.38e-92 | 298 |
MS.gene006849.t1 | MTR_1g101370 | 33.704 | 540 | 302 | 15 | 89 | 600 | 95 | 606 | 3.01e-92 | 297 |
MS.gene006849.t1 | MTR_1g029730 | 33.087 | 541 | 302 | 16 | 95 | 608 | 151 | 658 | 1.45e-91 | 296 |
MS.gene006849.t1 | MTR_5g040360 | 31.598 | 557 | 333 | 13 | 72 | 608 | 70 | 598 | 1.63e-91 | 295 |
MS.gene006849.t1 | MTR_7g076170 | 33.152 | 552 | 308 | 15 | 88 | 608 | 103 | 624 | 4.30e-91 | 295 |
MS.gene006849.t1 | MTR_3g040370 | 32.768 | 531 | 308 | 13 | 84 | 596 | 83 | 582 | 5.00e-91 | 293 |
MS.gene006849.t1 | MTR_8g432620 | 31.900 | 558 | 325 | 11 | 73 | 608 | 75 | 599 | 1.16e-90 | 292 |
MS.gene006849.t1 | MTR_7g006060 | 32.130 | 554 | 315 | 14 | 82 | 603 | 39 | 563 | 1.44e-89 | 288 |
MS.gene006849.t1 | MTR_0019s0120 | 32.216 | 537 | 310 | 13 | 89 | 600 | 108 | 615 | 1.44e-89 | 290 |
MS.gene006849.t1 | MTR_4g098890 | 32.039 | 618 | 352 | 16 | 24 | 606 | 16 | 600 | 3.11e-88 | 300 |
MS.gene006849.t1 | MTR_5g026930 | 32.321 | 560 | 328 | 12 | 71 | 606 | 55 | 587 | 1.60e-87 | 284 |
MS.gene006849.t1 | MTR_5g080720 | 34.917 | 484 | 256 | 13 | 81 | 539 | 120 | 569 | 9.50e-87 | 281 |
MS.gene006849.t1 | MTR_5g083150 | 30.000 | 580 | 328 | 17 | 54 | 590 | 41 | 585 | 5.45e-81 | 267 |
MS.gene006849.t1 | MTR_7g076150 | 33.696 | 460 | 253 | 9 | 173 | 610 | 16 | 445 | 7.16e-81 | 262 |
MS.gene006849.t1 | MTR_3g088790 | 32.058 | 549 | 300 | 17 | 96 | 610 | 234 | 743 | 2.32e-80 | 269 |
MS.gene006849.t1 | MTR_3g071530 | 31.809 | 503 | 282 | 18 | 128 | 610 | 186 | 647 | 3.04e-78 | 261 |
MS.gene006849.t1 | MTR_5g021100 | 31.362 | 558 | 312 | 16 | 74 | 596 | 303 | 824 | 2.12e-77 | 263 |
MS.gene006849.t1 | MTR_3g096480 | 33.704 | 540 | 291 | 20 | 95 | 604 | 268 | 770 | 4.29e-77 | 261 |
MS.gene006849.t1 | MTR_8g093880 | 32.458 | 533 | 293 | 19 | 95 | 594 | 298 | 796 | 4.83e-77 | 261 |
MS.gene006849.t1 | MTR_1g022255 | 31.099 | 537 | 304 | 19 | 91 | 606 | 205 | 696 | 5.59e-73 | 248 |
MS.gene006849.t1 | MTR_8g076650 | 31.354 | 539 | 304 | 17 | 95 | 606 | 387 | 886 | 1.29e-71 | 248 |
MS.gene006849.t1 | MTR_5g026930 | 29.936 | 471 | 281 | 10 | 71 | 518 | 55 | 499 | 3.39e-62 | 214 |
MS.gene006849.t1 | MTR_0019s0120 | 30.110 | 455 | 265 | 12 | 89 | 518 | 108 | 534 | 1.78e-61 | 213 |
MS.gene006849.t1 | MTR_1g022255 | 25.799 | 407 | 242 | 15 | 91 | 477 | 205 | 571 | 4.24e-34 | 137 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006849.t1 | AT2G03480 | 67.537 | 613 | 190 | 5 | 1 | 611 | 1 | 606 | 0.0 | 863 |
MS.gene006849.t1 | AT2G03480 | 67.210 | 613 | 181 | 5 | 1 | 611 | 1 | 595 | 0.0 | 863 |
MS.gene006849.t1 | AT1G13860 | 66.612 | 614 | 183 | 6 | 8 | 611 | 2 | 603 | 0.0 | 857 |
MS.gene006849.t1 | AT1G13860 | 66.612 | 614 | 183 | 6 | 8 | 611 | 2 | 603 | 0.0 | 857 |
MS.gene006849.t1 | AT1G13860 | 66.612 | 614 | 183 | 6 | 8 | 611 | 2 | 603 | 0.0 | 857 |
MS.gene006849.t1 | AT1G13860 | 66.612 | 614 | 183 | 6 | 8 | 611 | 2 | 603 | 0.0 | 857 |
MS.gene006849.t1 | AT1G13860 | 71.429 | 448 | 118 | 4 | 173 | 611 | 1 | 447 | 0.0 | 687 |
MS.gene006849.t1 | AT1G78240 | 55.323 | 573 | 234 | 9 | 55 | 611 | 115 | 681 | 0.0 | 658 |
MS.gene006849.t1 | AT1G78240 | 55.323 | 573 | 234 | 9 | 55 | 611 | 115 | 681 | 0.0 | 658 |
MS.gene006849.t1 | AT2G03480 | 65.375 | 413 | 139 | 4 | 1 | 411 | 1 | 411 | 0.0 | 560 |
MS.gene006849.t1 | AT3G23300 | 33.977 | 621 | 360 | 14 | 14 | 609 | 7 | 602 | 2.35e-107 | 336 |
MS.gene006849.t1 | AT3G23300 | 33.977 | 621 | 360 | 14 | 14 | 609 | 7 | 602 | 2.35e-107 | 336 |
MS.gene006849.t1 | AT5G14430 | 34.167 | 600 | 330 | 15 | 17 | 587 | 13 | 576 | 6.56e-105 | 330 |
MS.gene006849.t1 | AT2G39750 | 34.712 | 556 | 311 | 14 | 77 | 610 | 168 | 693 | 4.08e-104 | 330 |
MS.gene006849.t1 | AT5G14430 | 33.833 | 600 | 332 | 15 | 17 | 587 | 13 | 576 | 9.10e-104 | 327 |
MS.gene006849.t1 | AT5G04060 | 35.145 | 552 | 309 | 16 | 77 | 608 | 74 | 596 | 1.27e-103 | 326 |
MS.gene006849.t1 | AT5G06050 | 35.368 | 557 | 302 | 16 | 77 | 608 | 140 | 663 | 4.75e-103 | 327 |
MS.gene006849.t1 | AT4G14360 | 34.087 | 531 | 299 | 10 | 80 | 587 | 70 | 572 | 1.76e-101 | 321 |
MS.gene006849.t1 | AT4G14360 | 34.087 | 531 | 299 | 10 | 80 | 587 | 70 | 572 | 1.76e-101 | 321 |
MS.gene006849.t1 | AT3G10200 | 34.489 | 548 | 312 | 16 | 81 | 608 | 67 | 587 | 4.11e-100 | 317 |
MS.gene006849.t1 | AT1G77260 | 33.392 | 572 | 317 | 15 | 62 | 606 | 119 | 653 | 3.49e-99 | 316 |
MS.gene006849.t1 | AT1G31850 | 32.973 | 555 | 311 | 14 | 81 | 606 | 71 | 593 | 1.57e-98 | 313 |
MS.gene006849.t1 | AT1G31850 | 32.973 | 555 | 311 | 14 | 81 | 606 | 71 | 593 | 1.57e-98 | 313 |
MS.gene006849.t1 | AT1G31850 | 32.973 | 555 | 311 | 14 | 81 | 606 | 71 | 593 | 1.57e-98 | 313 |
MS.gene006849.t1 | AT1G31850 | 32.973 | 555 | 311 | 14 | 81 | 606 | 71 | 593 | 1.57e-98 | 313 |
MS.gene006849.t1 | AT4G19120 | 33.452 | 562 | 315 | 13 | 69 | 606 | 61 | 587 | 2.81e-98 | 312 |
MS.gene006849.t1 | AT4G19120 | 33.452 | 562 | 315 | 13 | 69 | 606 | 61 | 587 | 2.81e-98 | 312 |
MS.gene006849.t1 | AT1G04430 | 33.521 | 534 | 314 | 9 | 84 | 599 | 82 | 592 | 5.81e-98 | 312 |
MS.gene006849.t1 | AT1G04430 | 33.521 | 534 | 314 | 9 | 84 | 599 | 82 | 592 | 5.81e-98 | 312 |
MS.gene006849.t1 | AT1G04430 | 33.521 | 534 | 314 | 9 | 84 | 599 | 82 | 592 | 5.81e-98 | 312 |
MS.gene006849.t1 | AT2G43200 | 35.393 | 534 | 288 | 16 | 88 | 595 | 93 | 595 | 6.52e-95 | 304 |
MS.gene006849.t1 | AT2G43200 | 35.393 | 534 | 288 | 16 | 88 | 595 | 93 | 595 | 6.52e-95 | 304 |
MS.gene006849.t1 | AT4G10440 | 30.671 | 626 | 364 | 16 | 22 | 608 | 21 | 615 | 1.17e-94 | 304 |
MS.gene006849.t1 | AT1G33170 | 32.609 | 552 | 309 | 15 | 89 | 608 | 113 | 633 | 3.83e-92 | 297 |
MS.gene006849.t1 | AT3G10200 | 34.104 | 519 | 294 | 16 | 61 | 562 | 51 | 538 | 1.90e-91 | 294 |
MS.gene006849.t1 | AT4G00740 | 30.918 | 621 | 357 | 15 | 20 | 610 | 16 | 594 | 7.71e-91 | 293 |
MS.gene006849.t1 | AT4G00740 | 30.918 | 621 | 357 | 15 | 20 | 610 | 16 | 594 | 7.71e-91 | 293 |
MS.gene006849.t1 | AT1G26850 | 32.021 | 559 | 325 | 11 | 77 | 608 | 77 | 607 | 1.47e-90 | 292 |
MS.gene006849.t1 | AT1G26850 | 32.021 | 559 | 325 | 11 | 77 | 608 | 77 | 607 | 1.47e-90 | 292 |
MS.gene006849.t1 | AT2G45750 | 33.026 | 542 | 306 | 14 | 89 | 600 | 90 | 604 | 3.57e-89 | 289 |
MS.gene006849.t1 | AT4G00750 | 32.065 | 552 | 315 | 13 | 89 | 611 | 99 | 619 | 9.27e-89 | 288 |
MS.gene006849.t1 | AT4G18030 | 29.032 | 620 | 370 | 15 | 23 | 608 | 19 | 602 | 1.71e-83 | 274 |
MS.gene006849.t1 | AT3G56080 | 31.561 | 583 | 344 | 16 | 28 | 590 | 48 | 595 | 6.31e-83 | 272 |
MS.gene006849.t1 | AT2G40280 | 30.693 | 606 | 349 | 20 | 33 | 610 | 20 | 582 | 1.14e-82 | 271 |
MS.gene006849.t1 | AT2G34300 | 33.013 | 521 | 284 | 16 | 114 | 606 | 271 | 754 | 4.15e-82 | 274 |
MS.gene006849.t1 | AT2G34300 | 33.013 | 521 | 284 | 16 | 114 | 606 | 271 | 754 | 4.15e-82 | 274 |
MS.gene006849.t1 | AT2G34300 | 33.013 | 521 | 284 | 16 | 114 | 606 | 271 | 754 | 4.15e-82 | 274 |
MS.gene006849.t1 | AT1G29470 | 32.472 | 542 | 299 | 18 | 95 | 606 | 250 | 754 | 3.05e-80 | 269 |
MS.gene006849.t1 | AT1G29470 | 32.472 | 542 | 299 | 18 | 95 | 606 | 250 | 754 | 3.05e-80 | 269 |
MS.gene006849.t1 | AT1G19430 | 31.793 | 541 | 308 | 19 | 88 | 609 | 223 | 721 | 6.93e-76 | 256 |
MS.gene006849.t1 | AT1G19430 | 31.793 | 541 | 308 | 19 | 88 | 609 | 223 | 721 | 6.93e-76 | 256 |
MS.gene006849.t1 | AT5G64030 | 31.689 | 527 | 296 | 16 | 95 | 591 | 308 | 800 | 1.39e-74 | 255 |
MS.gene006849.t1 | AT3G51070 | 30.220 | 546 | 315 | 15 | 95 | 610 | 381 | 890 | 6.08e-72 | 249 |
MS.gene006849.t1 | AT3G56080 | 31.599 | 538 | 313 | 16 | 28 | 545 | 48 | 550 | 7.25e-71 | 239 |
MS.gene006849.t1 | AT4G19120 | 31.290 | 473 | 268 | 11 | 69 | 518 | 61 | 499 | 2.16e-70 | 236 |
MS.gene006849.t1 | AT3G51070 | 31.027 | 477 | 266 | 13 | 95 | 541 | 381 | 824 | 1.35e-62 | 222 |
MS.gene006849.t1 | AT1G26850 | 29.306 | 447 | 265 | 8 | 77 | 499 | 77 | 496 | 5.80e-55 | 195 |
MS.gene006849.t1 | AT1G19430 | 28.431 | 408 | 238 | 15 | 88 | 477 | 223 | 594 | 9.67e-37 | 145 |
Find 167 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTAAGCGTGATTAGTATTT+TGG | 0.127843 | 4.1:-24583158 | MS.gene006849:CDS |
AATATTAACCAGTTCAATTT+TGG | 0.173409 | 4.1:+24583178 | None:intergenic |
TTTATGAAGACATGCATTTC+TGG | 0.194109 | 4.1:-24574179 | MS.gene006849:CDS |
GCGTGTAGCTGTTGATTATT+TGG | 0.241569 | 4.1:-24583035 | MS.gene006849:CDS |
TCTTCATCTCCAGGTCTCTT+TGG | 0.249505 | 4.1:+24574099 | None:intergenic |
TTGGCTTTCATTACATTGTT+TGG | 0.251762 | 4.1:-24583139 | MS.gene006849:CDS |
AACTGTGGGTTTGGTAGCTT+TGG | 0.253501 | 4.1:-24582120 | MS.gene006849:CDS |
GGGTTTGAATGCTGCATTGC+TGG | 0.274702 | 4.1:-24574019 | MS.gene006849:CDS |
GCCCTATCATCTCCGCAATT+TGG | 0.286356 | 4.1:+24582400 | None:intergenic |
ATGGACATGAGTTCTAATTA+TGG | 0.292273 | 4.1:-24574042 | MS.gene006849:CDS |
CAGCATGATAGACTTATTCT+TGG | 0.317399 | 4.1:-24573156 | MS.gene006849:CDS |
GGTTTGAAGCAGAAGGAGTT+AGG | 0.318276 | 4.1:-24582989 | MS.gene006849:CDS |
TTTGTTGTCACTTAAAATAA+TGG | 0.323120 | 4.1:-24582091 | MS.gene006849:CDS |
GTGCTCAATGTGGGATCATT+TGG | 0.324055 | 4.1:-24581933 | MS.gene006849:CDS |
GATCAGCTGTAGATAATTAT+TGG | 0.329962 | 4.1:-24574155 | MS.gene006849:CDS |
ACATTCCGGATCATGTTATA+TGG | 0.330347 | 4.1:+24574066 | None:intergenic |
AGACGAAAGAAATTGATCTT+TGG | 0.330539 | 4.1:+24582754 | None:intergenic |
TTCAAATCCAGACAACAAAT+TGG | 0.335570 | 4.1:+24582916 | None:intergenic |
AAAGATCAATTTCTTTCGTC+TGG | 0.336418 | 4.1:-24582752 | MS.gene006849:CDS |
TGCTGGGTATGCTCTTCCAT+TGG | 0.347288 | 4.1:+24574753 | None:intergenic |
TCATATGATAATGATGGATA+TGG | 0.362326 | 4.1:+24581967 | None:intergenic |
CGCCAAATTGCGGAGATGAT+AGG | 0.378623 | 4.1:-24582402 | MS.gene006849:CDS |
CAGGATGGTTTGATCTTTGA+CGG | 0.384835 | 4.1:-24582441 | MS.gene006849:CDS |
TGGACATGAGTTCTAATTAT+GGG | 0.384989 | 4.1:-24574041 | MS.gene006849:CDS |
GCTGGGTATGCTCTTCCATT+GGG | 0.388868 | 4.1:+24574754 | None:intergenic |
GGAGCGTCCAACAGAGTTGC+TGG | 0.390872 | 4.1:+24574736 | None:intergenic |
GTAACTGCCAATTTGTTGTC+TGG | 0.393469 | 4.1:-24582923 | MS.gene006849:CDS |
TGGGATCATTTGGGATGAAA+AGG | 0.403002 | 4.1:-24581923 | MS.gene006849:CDS |
CAGAAGGAGTTAGGGCTTTG+TGG | 0.406998 | 4.1:-24582980 | MS.gene006849:CDS |
TAACATGATCCGGAATGTTA+TGG | 0.408722 | 4.1:-24574061 | MS.gene006849:CDS |
AGATAAAAGTCTCATCTTGC+TGG | 0.417299 | 4.1:+24574709 | None:intergenic |
TCATGAATGTTGTTCCTGCC+AGG | 0.420013 | 4.1:-24573975 | MS.gene006849:CDS |
CTCAAGTACGTTGGGAAGCC+AGG | 0.421484 | 4.1:-24572789 | MS.gene006849:CDS |
AACTCATGTCCATAACATTC+CGG | 0.426140 | 4.1:+24574052 | None:intergenic |
CATCTCCAGGTCTCTTTGGA+TGG | 0.427344 | 4.1:+24574103 | None:intergenic |
AAATTCCGTTACGTTGGCCT+AGG | 0.440632 | 4.1:-24582814 | MS.gene006849:CDS |
CTGGACATTAACTGTGGGTT+TGG | 0.442223 | 4.1:-24582129 | MS.gene006849:CDS |
GGCAGTGGATCTTCATCTCC+AGG | 0.442838 | 4.1:+24574090 | None:intergenic |
TATGATCTGCTTCATGCAAA+TGG | 0.446445 | 4.1:-24573209 | MS.gene006849:CDS |
TAGGGCTTTGTGGAAAAGAA+AGG | 0.449648 | 4.1:-24582970 | MS.gene006849:CDS |
GCCCTAAACCAAAATTGAAC+TGG | 0.452625 | 4.1:-24583186 | MS.gene006849:CDS |
AGAGGCCTTCCTGCTATGAT+TGG | 0.454300 | 4.1:-24582012 | MS.gene006849:CDS |
TGATTCTTCGCCTAGGAGAC+AGG | 0.459410 | 4.1:-24583095 | MS.gene006849:CDS |
TGGTCATGAGAAGCTCTTTG+TGG | 0.464411 | 4.1:-24583231 | None:intergenic |
ATGTCTTCATAAAACTCTTC+AGG | 0.464893 | 4.1:+24574189 | None:intergenic |
TGCTCAATGTGGGATCATTT+GGG | 0.467670 | 4.1:-24581932 | MS.gene006849:CDS |
TTGCTGGTGTTATGCATGAC+TGG | 0.467884 | 4.1:-24573915 | MS.gene006849:intron |
GCTATTCAACTATGTAAAGA+TGG | 0.468832 | 4.1:-24574458 | MS.gene006849:CDS |
ATCACCTACGAGCAAGCTAC+AGG | 0.468915 | 4.1:-24574811 | MS.gene006849:CDS |
TGCCTCCATATAACATGATC+CGG | 0.474515 | 4.1:-24574071 | MS.gene006849:CDS |
GAGGGAAGGAGATCGGTGTT+TGG | 0.475001 | 4.1:-24582858 | MS.gene006849:CDS |
ATTTGAACAAGGGGAGGAGC+TGG | 0.476097 | 4.1:-24582900 | MS.gene006849:CDS |
AAGTCTCATCTTGCTGGGCT+AGG | 0.477504 | 4.1:+24574715 | None:intergenic |
GCCAAATTGCGGAGATGATA+GGG | 0.478531 | 4.1:-24582401 | MS.gene006849:CDS |
GCTGGATTGCAATACAAAAC+AGG | 0.478590 | 4.1:-24574373 | MS.gene006849:CDS |
GTTACGTTGGCCTAGGGGTA+GGG | 0.480364 | 4.1:-24582807 | MS.gene006849:CDS |
GTGTTTGGTTCGTCCTCCTA+AGG | 0.480788 | 4.1:-24582843 | MS.gene006849:CDS |
GGATGGTCAGAGAAAATTAG+TGG | 0.482184 | 4.1:+24574120 | None:intergenic |
CTATTCAACTATGTAAAGAT+GGG | 0.483883 | 4.1:-24574457 | MS.gene006849:CDS |
CTGAAATCTGTTTCCAGCGG+TGG | 0.483902 | 4.1:-24583010 | MS.gene006849:CDS |
AGGGCTTTGTGGAAAAGAAA+GGG | 0.485039 | 4.1:-24582969 | MS.gene006849:CDS |
CTAGGGGTAGGGATATTATA+TGG | 0.485149 | 4.1:-24582796 | MS.gene006849:CDS |
ACTTATTCTTGGAGATGGAC+AGG | 0.485529 | 4.1:-24573145 | MS.gene006849:CDS |
CTTCCTCTCATACTCGATAG+AGG | 0.487965 | 4.1:-24573940 | MS.gene006849:CDS |
GTTTGAAGCAGAAGGAGTTA+GGG | 0.490196 | 4.1:-24582988 | MS.gene006849:CDS |
ATAAGCGAAGCCTGTCTCCT+AGG | 0.490669 | 4.1:+24583085 | None:intergenic |
CGTTACGTTGGCCTAGGGGT+AGG | 0.493314 | 4.1:-24582808 | MS.gene006849:CDS |
ATCATATGTCCGTGGGTAGG+TGG | 0.501666 | 4.1:+24573226 | None:intergenic |
CGTCTGGAAGTATGACCAAA+AGG | 0.505305 | 4.1:-24582736 | MS.gene006849:intron |
GGTTTGTGTAGCGGCATATG+AGG | 0.505589 | 4.1:-24582067 | MS.gene006849:CDS |
CATGAATGTTGTTCCTGCCA+GGG | 0.508876 | 4.1:-24573974 | MS.gene006849:CDS |
ACTTGCAACTCAAGTACGTT+GGG | 0.511754 | 4.1:-24572797 | MS.gene006849:CDS |
CAGCGGTGGTTTGAAGCAGA+AGG | 0.512739 | 4.1:-24582996 | MS.gene006849:CDS |
CTGGCAGAAGACTACTGACC+TGG | 0.512790 | 4.1:-24574688 | MS.gene006849:CDS |
GGGATCATTTGGGATGAAAA+GGG | 0.516117 | 4.1:-24581922 | MS.gene006849:intron |
CTCAATCGTTCCCACTGTAT+CGG | 0.516495 | 4.1:+24572831 | None:intergenic |
GATAGACTTATTCTTGGAGA+TGG | 0.517219 | 4.1:-24573150 | MS.gene006849:CDS |
CAAACCATCCTGTGAGTGAA+AGG | 0.520104 | 4.1:+24582452 | None:intergenic |
TCAAATTGCCTTTCACTCAC+AGG | 0.521415 | 4.1:-24582460 | MS.gene006849:CDS |
AATTCCGTTACGTTGGCCTA+GGG | 0.522095 | 4.1:-24582813 | MS.gene006849:CDS |
GTTGACCGTGTTCTTAAACC+TGG | 0.522848 | 4.1:-24574852 | MS.gene006849:CDS |
ATAACAGGTTCGAACTATGC+TGG | 0.522963 | 4.1:-24582148 | MS.gene006849:intron |
GCTCTTTGTGGAACAAATTG+TGG | 0.523628 | 4.1:-24583219 | MS.gene006849:CDS |
GATCTCCTTCCCTCGACACT+TGG | 0.524776 | 4.1:+24582867 | None:intergenic |
TCATATGTCCGTGGGTAGGT+GGG | 0.527301 | 4.1:+24573227 | None:intergenic |
AGCATACCCAGCAACTCTGT+TGG | 0.527719 | 4.1:-24574743 | MS.gene006849:CDS |
AATATAAAATTCCGTTACGT+TGG | 0.527837 | 4.1:-24582820 | MS.gene006849:CDS |
GTCCGTGGGTAGGTGGGGAA+AGG | 0.530884 | 4.1:+24573233 | None:intergenic |
ATGAAGTTGCCAATCATAGC+AGG | 0.530957 | 4.1:+24582003 | None:intergenic |
ATTCTGAAGATCAATTATCC+TGG | 0.533193 | 4.1:+24572771 | None:intergenic |
AACAAGGGGAGGAGCTGGAT+CGG | 0.533252 | 4.1:-24582895 | MS.gene006849:CDS |
GTAGCGGCATATGAGGCAAC+TGG | 0.534791 | 4.1:-24582060 | MS.gene006849:CDS |
GTTAAAACAAAATATCCTCC+AGG | 0.535765 | 4.1:+24574834 | None:intergenic |
CTAGACGTCCCGCTTATACA+TGG | 0.541918 | 4.1:+24574401 | None:intergenic |
TGTACTCAATTCAGAATCAA+AGG | 0.544658 | 4.1:+24574349 | None:intergenic |
TCTCAAGAGACAATTGAACT+TGG | 0.546341 | 4.1:+24582034 | None:intergenic |
CACTGCCAAGTGTCGAGGGA+AGG | 0.546528 | 4.1:-24582872 | MS.gene006849:CDS |
GGACATGAGTTCTAATTATG+GGG | 0.548684 | 4.1:-24574040 | MS.gene006849:CDS |
TTGTTGTCTGGATTTGAACA+AGG | 0.549133 | 4.1:-24582911 | MS.gene006849:CDS |
GATAAAAGTCTCATCTTGCT+GGG | 0.549313 | 4.1:+24574710 | None:intergenic |
GCGGGACGTCTAGCAAGCGC+TGG | 0.550836 | 4.1:-24574391 | MS.gene006849:CDS |
ACCGAGATGCATAACAGTCC+AGG | 0.555849 | 4.1:+24574670 | None:intergenic |
AGGAAGTGCATTATAAGCCC+TGG | 0.557714 | 4.1:+24573957 | None:intergenic |
CTTCTGCTTCAAACCACCGC+TGG | 0.559201 | 4.1:+24582997 | None:intergenic |
CATATGTCCGTGGGTAGGTG+GGG | 0.559461 | 4.1:+24573228 | None:intergenic |
GGTAGGGATATTATATGGAG+TGG | 0.560775 | 4.1:-24582791 | MS.gene006849:CDS |
ATCATGTTATATGGAGGCAG+TGG | 0.561709 | 4.1:+24574075 | None:intergenic |
ACCTGGACTGTTATGCATCT+CGG | 0.561837 | 4.1:-24574671 | MS.gene006849:intron |
CAAGCTACAGGGTTCATCGC+GGG | 0.562738 | 4.1:-24574799 | MS.gene006849:CDS |
ATTGCGGAGATGATAGGGCT+AGG | 0.563796 | 4.1:-24582396 | MS.gene006849:CDS |
AGGCGAAGAATCAATCGCAT+TGG | 0.564383 | 4.1:+24583105 | None:intergenic |
AAGTATCACGTTGAACCCAA+TGG | 0.567548 | 4.1:-24574769 | MS.gene006849:CDS |
AAGTGTCGAGGGAAGGAGAT+CGG | 0.570175 | 4.1:-24582865 | MS.gene006849:CDS |
CACTTGTACCATGTATAAGC+GGG | 0.571095 | 4.1:-24574409 | MS.gene006849:CDS |
GATACAGAGCTTCCTCAAGC+TGG | 0.571400 | 4.1:-24582369 | MS.gene006849:CDS |
ATCGGCACTGCCAAGTGTCG+AGG | 0.573901 | 4.1:-24582877 | MS.gene006849:CDS |
CACTTGCAACTCAAGTACGT+TGG | 0.574089 | 4.1:-24572798 | MS.gene006849:CDS |
AGGATAATTGATCTTCAGAA+TGG | 0.576325 | 4.1:-24572769 | MS.gene006849:CDS |
AACCTTTCCCCACCTACCCA+CGG | 0.584376 | 4.1:-24573235 | MS.gene006849:CDS |
TGTTGTCTGGATTTGAACAA+GGG | 0.584953 | 4.1:-24582910 | MS.gene006849:CDS |
AATAATGGCGGTTTGTGTAG+CGG | 0.585041 | 4.1:-24582076 | MS.gene006849:CDS |
GTAGGGATATTATATGGAGT+GGG | 0.586026 | 4.1:-24582790 | MS.gene006849:CDS |
ATGCGATTGATTCTTCGCCT+AGG | 0.593349 | 4.1:-24583102 | MS.gene006849:CDS |
ATTGCCTTTCACTCACAGGA+TGG | 0.595160 | 4.1:-24582456 | MS.gene006849:CDS |
TCTGACCATCCAAAGAGACC+TGG | 0.597424 | 4.1:-24574108 | MS.gene006849:CDS |
GAGCGTCCAACAGAGTTGCT+GGG | 0.597757 | 4.1:+24574737 | None:intergenic |
GTTCAATTGTCTCTTGAGAG+AGG | 0.597892 | 4.1:-24582030 | MS.gene006849:CDS |
AGATTACTCTCGCCAAATTG+CGG | 0.598637 | 4.1:-24582412 | MS.gene006849:CDS |
GTCTGGATTTGAACAAGGGG+AGG | 0.599371 | 4.1:-24582906 | MS.gene006849:CDS |
TTATTTATACAAATTACAGA+AGG | 0.601455 | 4.1:-24583066 | MS.gene006849:CDS |
CTATGCTGGACATTAACTGT+GGG | 0.602187 | 4.1:-24582134 | MS.gene006849:CDS |
GTTGTCACTTAAAATAATGG+CGG | 0.607184 | 4.1:-24582088 | MS.gene006849:CDS |
TCGGCACTGCCAAGTGTCGA+GGG | 0.609587 | 4.1:-24582876 | MS.gene006849:CDS |
ATCCTCCAGGTTTAAGAACA+CGG | 0.611539 | 4.1:+24574847 | None:intergenic |
GACATGAGTTCTAATTATGG+GGG | 0.612104 | 4.1:-24574039 | MS.gene006849:CDS |
ACCATGTCATATGATAATGA+TGG | 0.612723 | 4.1:+24581961 | None:intergenic |
GAACACGGTCAACTTCTATG+AGG | 0.612831 | 4.1:+24574862 | None:intergenic |
AGTGCATTATAAGCCCTGGC+AGG | 0.615051 | 4.1:+24573961 | None:intergenic |
TGGTTCACTGTGCTCAATGT+GGG | 0.619963 | 4.1:-24581942 | MS.gene006849:CDS |
TGAAGCAGATCATATGTCCG+TGG | 0.620399 | 4.1:+24573218 | None:intergenic |
CCACTTGTACCATGTATAAG+CGG | 0.622552 | 4.1:-24574410 | MS.gene006849:CDS |
AAACCTCTATCGAGTATGAG+AGG | 0.624690 | 4.1:+24573937 | None:intergenic |
CCGCTTATACATGGTACAAG+TGG | 0.624827 | 4.1:+24574410 | None:intergenic |
CATATAATATCCCTACCCCT+AGG | 0.626144 | 4.1:+24582797 | None:intergenic |
GTTGTCTGGATTTGAACAAG+GGG | 0.627393 | 4.1:-24582909 | MS.gene006849:CDS |
TCTGGCAAACAAGTAACCGC+TGG | 0.630480 | 4.1:+24572740 | None:intergenic |
GAAGCAGATCATATGTCCGT+GGG | 0.637899 | 4.1:+24573219 | None:intergenic |
CAGATCATATGTCCGTGGGT+AGG | 0.645203 | 4.1:+24573223 | None:intergenic |
GAGCTGAAATCTGTTTCCAG+CGG | 0.647557 | 4.1:-24583013 | MS.gene006849:CDS |
TACAGTGGGAACGATTGAGA+TGG | 0.647875 | 4.1:-24572827 | MS.gene006849:CDS |
TTTGAATGCTGCATTGCTGG+AGG | 0.649123 | 4.1:-24574016 | MS.gene006849:CDS |
ATTCCGTTACGTTGGCCTAG+GGG | 0.651302 | 4.1:-24582812 | MS.gene006849:CDS |
ACTATGCTGGACATTAACTG+TGG | 0.653230 | 4.1:-24582135 | MS.gene006849:CDS |
TTCCGGATCATGTTATATGG+AGG | 0.654047 | 4.1:+24574069 | None:intergenic |
TTCAGAATGGCAGTGACCAG+CGG | 0.655775 | 4.1:-24572756 | MS.gene006849:CDS |
GGAAGACTTACACCAGCTTG+AGG | 0.658019 | 4.1:+24582357 | None:intergenic |
TATTCAACTATGTAAAGATG+GGG | 0.658313 | 4.1:-24574456 | MS.gene006849:CDS |
GAACCCTGTAGCTTGCTCGT+AGG | 0.661400 | 4.1:+24574807 | None:intergenic |
TCACCTACGAGCAAGCTACA+GGG | 0.664233 | 4.1:-24574810 | MS.gene006849:CDS |
TCCATCATTATCATATGACA+TGG | 0.664798 | 4.1:-24581962 | MS.gene006849:CDS |
ATGGTTCACTGTGCTCAATG+TGG | 0.667023 | 4.1:-24581943 | MS.gene006849:CDS |
GACCGTGTTCTTAAACCTGG+AGG | 0.671928 | 4.1:-24574849 | MS.gene006849:CDS |
CTACCCCTAGGCCAACGTAA+CGG | 0.672375 | 4.1:+24582809 | None:intergenic |
AGTTGCCAATCATAGCAGGA+AGG | 0.692650 | 4.1:+24582007 | None:intergenic |
TTGGCAGTTACATTGTGACA+AGG | 0.692917 | 4.1:+24582935 | None:intergenic |
GCAAGCTACAGGGTTCATCG+CGG | 0.701719 | 4.1:-24574800 | MS.gene006849:CDS |
GGACAGGATACTACGACCAG+AGG | 0.704211 | 4.1:-24573129 | MS.gene006849:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 24572720 | 24583248 | 24572720 | ID=MS.gene006849 |
chr4.1 | mRNA | 24572720 | 24583248 | 24572720 | ID=MS.gene006849.t1;Parent=MS.gene006849 |
chr4.1 | exon | 24582737 | 24583248 | 24582737 | ID=MS.gene006849.t1.exon1;Parent=MS.gene006849.t1 |
chr4.1 | CDS | 24582737 | 24583248 | 24582737 | ID=cds.MS.gene006849.t1;Parent=MS.gene006849.t1 |
chr4.1 | exon | 24582368 | 24582503 | 24582368 | ID=MS.gene006849.t1.exon2;Parent=MS.gene006849.t1 |
chr4.1 | CDS | 24582368 | 24582503 | 24582368 | ID=cds.MS.gene006849.t1;Parent=MS.gene006849.t1 |
chr4.1 | exon | 24581923 | 24582163 | 24581923 | ID=MS.gene006849.t1.exon3;Parent=MS.gene006849.t1 |
chr4.1 | CDS | 24581923 | 24582163 | 24581923 | ID=cds.MS.gene006849.t1;Parent=MS.gene006849.t1 |
chr4.1 | exon | 24574672 | 24574894 | 24574672 | ID=MS.gene006849.t1.exon4;Parent=MS.gene006849.t1 |
chr4.1 | CDS | 24574672 | 24574894 | 24574672 | ID=cds.MS.gene006849.t1;Parent=MS.gene006849.t1 |
chr4.1 | exon | 24574354 | 24574490 | 24574354 | ID=MS.gene006849.t1.exon5;Parent=MS.gene006849.t1 |
chr4.1 | CDS | 24574354 | 24574490 | 24574354 | ID=cds.MS.gene006849.t1;Parent=MS.gene006849.t1 |
chr4.1 | exon | 24573916 | 24574219 | 24573916 | ID=MS.gene006849.t1.exon6;Parent=MS.gene006849.t1 |
chr4.1 | CDS | 24573916 | 24574219 | 24573916 | ID=cds.MS.gene006849.t1;Parent=MS.gene006849.t1 |
chr4.1 | exon | 24573130 | 24573262 | 24573130 | ID=MS.gene006849.t1.exon7;Parent=MS.gene006849.t1 |
chr4.1 | CDS | 24573130 | 24573262 | 24573130 | ID=cds.MS.gene006849.t1;Parent=MS.gene006849.t1 |
chr4.1 | exon | 24572720 | 24572869 | 24572720 | ID=MS.gene006849.t1.exon8;Parent=MS.gene006849.t1 |
chr4.1 | CDS | 24572720 | 24572869 | 24572720 | ID=cds.MS.gene006849.t1;Parent=MS.gene006849.t1 |
Gene Sequence |
Protein sequence |