AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene040711

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040711.t1 MTR_1g051055 97.204 608 15 1 1 608 1 606 0.0 1235
MS.gene040711.t1 MTR_1g442840 41.013 612 343 8 8 605 8 615 4.41e-157 465
MS.gene040711.t1 MTR_1g069785 46.310 542 262 10 81 605 56 585 1.91e-156 462
MS.gene040711.t1 MTR_1g442840 45.908 501 259 6 114 605 5 502 6.40e-152 447
MS.gene040711.t1 MTR_1g075900 44.952 525 277 6 90 605 93 614 9.33e-151 448
MS.gene040711.t1 MTR_5g080720 44.061 522 274 7 89 602 126 637 3.52e-144 432
MS.gene040711.t1 MTR_3g068990 43.378 521 277 7 90 602 155 665 1.53e-136 413
MS.gene040711.t1 MTR_8g432620 40.566 530 290 9 88 607 88 602 1.69e-136 411
MS.gene040711.t1 MTR_7g076150 40.566 530 290 9 88 607 75 589 3.16e-135 407
MS.gene040711.t1 MTR_5g080720 46.563 451 226 6 89 531 126 569 1.08e-134 405
MS.gene040711.t1 MTR_1g029730 41.985 524 287 9 90 604 143 658 4.37e-132 402
MS.gene040711.t1 MTR_8g100075 38.390 534 298 8 91 606 101 621 4.82e-130 395
MS.gene040711.t1 MTR_3g088790 42.778 540 250 17 96 605 232 742 2.56e-129 397
MS.gene040711.t1 MTR_1g101370 41.978 536 279 10 91 606 95 618 3.73e-129 393
MS.gene040711.t1 MTR_7g076170 38.419 544 296 10 86 606 99 626 1.44e-126 387
MS.gene040711.t1 MTR_0019s0120 40.260 539 280 12 91 606 108 627 1.90e-126 386
MS.gene040711.t1 MTR_8g071280 39.698 529 292 10 91 605 73 588 9.34e-125 380
MS.gene040711.t1 MTR_5g040360 39.098 532 288 11 91 605 87 599 1.81e-124 380
MS.gene040711.t1 MTR_3g040370 38.941 529 290 9 91 605 88 597 9.12e-124 379
MS.gene040711.t1 MTR_8g055840 38.983 531 291 10 91 605 87 600 3.64e-123 377
MS.gene040711.t1 MTR_8g432680 35.131 649 353 16 4 606 5 631 1.13e-122 377
MS.gene040711.t1 MTR_8g093880 39.071 581 314 17 47 605 244 806 5.13e-122 380
MS.gene040711.t1 MTR_5g083150 40.462 519 278 11 97 605 101 598 6.42e-122 374
MS.gene040711.t1 MTR_4g098890 40.613 522 266 11 91 591 89 587 1.63e-120 391
MS.gene040711.t1 MTR_8g076650 41.412 524 272 14 97 605 387 890 6.25e-120 377
MS.gene040711.t1 MTR_5g026930 38.308 603 315 15 23 605 25 590 1.03e-119 368
MS.gene040711.t1 MTR_5g021100 39.024 574 304 15 49 605 289 833 5.36e-119 373
MS.gene040711.t1 MTR_7g006060 39.734 526 279 12 79 581 34 544 1.87e-118 363
MS.gene040711.t1 MTR_3g096480 37.755 588 310 17 47 605 216 776 2.13e-117 367
MS.gene040711.t1 MTR_3g071530 38.521 514 291 8 97 605 153 646 9.36e-116 359
MS.gene040711.t1 MTR_7g076150 41.319 455 246 8 163 607 3 446 6.68e-115 350
MS.gene040711.t1 MTR_0019s0120 39.955 443 227 11 91 510 108 534 5.70e-98 309
MS.gene040711.t1 MTR_3g074780 34.615 546 318 11 88 605 154 688 8.11e-96 308
MS.gene040711.t1 MTR_4g083030 33.279 616 343 20 23 604 22 603 3.24e-95 304
MS.gene040711.t1 MTR_5g064080 34.982 546 306 12 88 605 146 670 7.51e-94 303
MS.gene040711.t1 MTR_5g026930 37.795 508 263 13 23 510 25 499 1.71e-93 296
MS.gene040711.t1 MTR_1g022255 32.625 518 311 12 98 605 210 699 5.55e-85 280
MS.gene040711.t1 MTR_1g022255 29.427 384 239 10 98 471 210 571 3.53e-45 169
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040711.t1 AT3G10200 68.152 606 171 7 6 608 5 591 0.0 893
MS.gene040711.t1 AT5G04060 68.309 609 180 5 2 608 3 600 0.0 892
MS.gene040711.t1 AT3G10200 67.754 552 157 6 6 555 5 537 0.0 811
MS.gene040711.t1 AT1G04430 41.680 607 321 10 19 605 20 613 5.89e-153 454
MS.gene040711.t1 AT1G04430 41.680 607 321 10 19 605 20 613 5.89e-153 454
MS.gene040711.t1 AT1G04430 41.680 607 321 10 19 605 20 613 5.89e-153 454
MS.gene040711.t1 AT3G23300 44.656 524 279 7 90 605 81 601 2.86e-149 444
MS.gene040711.t1 AT3G23300 44.656 524 279 7 90 605 81 601 2.86e-149 444
MS.gene040711.t1 AT5G14430 43.697 595 310 9 24 607 26 606 1.09e-148 443
MS.gene040711.t1 AT4G14360 44.084 524 282 6 90 605 78 598 1.17e-147 440
MS.gene040711.t1 AT4G14360 44.084 524 282 6 90 605 78 598 1.17e-147 440
MS.gene040711.t1 AT5G14430 43.361 595 312 9 24 607 26 606 2.45e-147 439
MS.gene040711.t1 AT5G06050 42.966 526 278 9 89 604 150 663 1.67e-139 421
MS.gene040711.t1 AT1G77260 42.589 533 283 9 84 604 134 655 1.87e-138 418
MS.gene040711.t1 AT2G39750 41.954 522 287 6 90 604 179 691 2.48e-138 419
MS.gene040711.t1 AT4G19120 36.989 611 333 12 14 605 13 590 3.79e-129 392
MS.gene040711.t1 AT4G19120 36.989 611 333 12 14 605 13 590 3.79e-129 392
MS.gene040711.t1 AT4G00740 39.700 534 289 10 88 607 81 595 9.45e-129 391
MS.gene040711.t1 AT4G00740 39.700 534 289 10 88 607 81 595 9.45e-129 391
MS.gene040711.t1 AT4G10440 35.680 625 346 12 14 606 17 617 9.13e-128 390
MS.gene040711.t1 AT1G33170 38.920 537 293 10 91 606 113 635 4.63e-127 388
MS.gene040711.t1 AT1G26850 39.179 536 289 10 91 605 89 608 6.18e-127 387
MS.gene040711.t1 AT1G26850 39.179 536 289 10 91 605 89 608 6.18e-127 387
MS.gene040711.t1 AT2G45750 38.739 555 303 11 78 607 75 617 1.38e-126 387
MS.gene040711.t1 AT1G29470 40.569 562 300 16 61 605 213 757 2.87e-126 390
MS.gene040711.t1 AT1G29470 40.569 562 300 16 61 605 213 757 2.87e-126 390
MS.gene040711.t1 AT1G31850 39.083 545 299 12 79 605 67 596 5.31e-125 382
MS.gene040711.t1 AT1G31850 39.083 545 299 12 79 605 67 596 5.31e-125 382
MS.gene040711.t1 AT1G31850 39.083 545 299 12 79 605 67 596 5.31e-125 382
MS.gene040711.t1 AT1G31850 39.083 545 299 12 79 605 67 596 5.31e-125 382
MS.gene040711.t1 AT2G34300 41.856 528 268 14 97 605 250 757 1.19e-124 386
MS.gene040711.t1 AT2G34300 41.856 528 268 14 97 605 250 757 1.19e-124 386
MS.gene040711.t1 AT2G34300 41.856 528 268 14 97 605 250 757 1.19e-124 386
MS.gene040711.t1 AT2G43200 40.909 528 279 12 90 599 93 605 8.92e-124 379
MS.gene040711.t1 AT2G43200 40.909 528 279 12 90 599 93 605 8.92e-124 379
MS.gene040711.t1 AT4G00750 37.585 588 322 12 45 606 55 623 2.35e-122 375
MS.gene040711.t1 AT2G40280 37.913 575 314 17 47 605 34 581 2.90e-122 374
MS.gene040711.t1 AT3G56080 38.088 617 314 16 6 580 1 591 5.75e-122 374
MS.gene040711.t1 AT3G51070 41.746 527 271 15 97 605 381 889 8.88e-121 379
MS.gene040711.t1 AT4G18030 38.649 533 292 10 91 605 88 603 1.93e-120 370
MS.gene040711.t1 AT5G64030 40.458 524 282 13 97 605 308 816 1.94e-120 377
MS.gene040711.t1 AT3G56080 38.636 572 286 15 6 535 1 549 4.60e-112 346
MS.gene040711.t1 AT3G51070 42.731 454 231 12 97 532 381 823 4.18e-106 339
MS.gene040711.t1 AT4G19120 36.047 516 282 10 14 510 13 499 3.69e-101 317
MS.gene040711.t1 AT1G13860 34.375 544 298 15 90 602 83 598 4.05e-95 304
MS.gene040711.t1 AT1G13860 34.375 544 298 15 90 602 83 598 4.05e-95 304
MS.gene040711.t1 AT1G13860 34.375 544 298 15 90 602 83 598 4.05e-95 304
MS.gene040711.t1 AT1G13860 34.375 544 298 15 90 602 83 598 4.05e-95 304
MS.gene040711.t1 AT1G78240 33.640 544 323 11 88 604 146 678 1.94e-94 305
MS.gene040711.t1 AT1G78240 33.640 544 323 11 88 604 146 678 1.94e-94 305
MS.gene040711.t1 AT2G03480 32.727 550 288 14 91 604 89 592 1.21e-90 292
MS.gene040711.t1 AT1G19430 34.489 519 301 14 98 605 232 722 1.81e-88 290
MS.gene040711.t1 AT1G19430 34.489 519 301 14 98 605 232 722 1.81e-88 290
MS.gene040711.t1 AT1G26850 36.449 428 239 8 91 498 89 503 5.67e-88 282
MS.gene040711.t1 AT2G03480 32.727 550 299 15 91 604 89 603 1.27e-87 284
MS.gene040711.t1 AT1G13860 36.009 436 240 12 194 602 19 442 1.62e-80 261
MS.gene040711.t1 AT2G03480 32.628 331 189 9 91 404 89 402 2.17e-49 177
MS.gene040711.t1 AT1G19430 31.051 409 248 13 77 472 208 595 4.28e-48 178

Find 131 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTACATCCCAAAGGAATTT+TGG 0.124701 1.2:+34527094 None:intergenic
CCTTTGGATGGACCCAATTT+TGG 0.176094 1.2:+34533857 None:intergenic
TCTGCCTTTGATTCTAAATC+TGG 0.203394 1.2:-34534549 MS.gene040711:CDS
CGTATAGACTTTCATGAAAA+TGG 0.234122 1.2:-34530962 MS.gene040711:intron
ATGTCAAAGGAGGCCAAAAT+TGG 0.261908 1.2:-34533870 MS.gene040711:CDS
AACGGCAAATCCACCATAAA+AGG 0.279828 1.2:+34527804 None:intergenic
GATCATCTCTGGTGGTTTCC+TGG 0.288695 1.2:-34533835 MS.gene040711:CDS
GTACGAGGATAACTTGAAAA+TGG 0.319695 1.2:+34527572 None:intergenic
CGAATAACAATGGGAGGTTT+TGG 0.324247 1.2:-34534582 None:intergenic
AAACAACTGCCATTTCCTTC+AGG 0.326414 1.2:-34531016 MS.gene040711:CDS
CATTGAACAACTTTCCTGTT+TGG 0.339170 1.2:-34527780 MS.gene040711:CDS
TGCAGGGATTTATTATCATT+AGG 0.340512 1.2:-34527156 MS.gene040711:intron
GCAGGGATTTATTATCATTA+GGG 0.340665 1.2:-34527155 MS.gene040711:intron
GCTCTAATGCAAATTGAATC+TGG 0.351997 1.2:+34531074 None:intergenic
ATTGAACAACTTTCCTGTTT+GGG 0.357492 1.2:-34527779 MS.gene040711:CDS
TGCGGGCATAGTTCAAGTTC+TGG 0.360065 1.2:-34531188 MS.gene040711:CDS
CTATCAGATGGCCTCTTAGT+AGG 0.363179 1.2:-34533936 MS.gene040711:CDS
CTCTTAGTAGGGATTATGTT+TGG 0.366295 1.2:-34533924 MS.gene040711:CDS
TTACATCAGATTCTATCTTC+TGG 0.370766 1.2:-34527903 MS.gene040711:CDS
AAGATCAGACTCGTCATTAT+TGG 0.376187 1.2:-34527879 MS.gene040711:CDS
ATTTATGACCGGGGTTTGAT+TGG 0.378010 1.2:-34527712 MS.gene040711:CDS
ATAGTTCAAGTTCTGGATCT+TGG 0.379508 1.2:-34531181 MS.gene040711:CDS
ATTTAGCCCCAAAATTCCTT+TGG 0.384533 1.2:-34527102 MS.gene040711:CDS
TAAATCTGGGCAAATCATAA+TGG 0.398537 1.2:-34534535 MS.gene040711:CDS
GGCATGAAGAACACCTTGTC+TGG 0.400833 1.2:-34527736 MS.gene040711:CDS
ATGATGAGTCTAAACCTTCA+TGG 0.401456 1.2:-34528700 MS.gene040711:CDS
TTTGCATTAGAGCGAGGAAT+AGG 0.404400 1.2:-34531064 MS.gene040711:CDS
TCCTGTCATTTGGGATAAGT+TGG 0.410218 1.2:-34528858 MS.gene040711:CDS
TTCTGCATTCTGCTGAAGGC+AGG 0.416327 1.2:+34528751 None:intergenic
TCAAATGACCCTGAAGGAAA+TGG 0.422002 1.2:+34531007 None:intergenic
TAGCCCTAGGTTTGTGTACT+GGG 0.422018 1.2:+34527517 None:intergenic
AGGGCTAGGTTGTATATTAG+AGG 0.425165 1.2:-34527501 MS.gene040711:CDS
TTTAGCCCCAAAATTCCTTT+GGG 0.425741 1.2:-34527101 MS.gene040711:CDS
GTAAAGTTCAGACTGCAATA+TGG 0.426050 1.2:-34528796 MS.gene040711:CDS
GTGGCACTCATTTCAAGAAT+GGG 0.431837 1.2:-34533810 MS.gene040711:CDS
ACTGAAAGGCGCTCGTGACT+TGG 0.432443 1.2:+34528614 None:intergenic
TTCAGCGTATCTTCTTCCCT+TGG 0.432592 1.2:-34531140 MS.gene040711:CDS
GGTGGCACTCATTTCAAGAA+TGG 0.433549 1.2:-34533811 MS.gene040711:CDS
ACTACATTCATTACCCAAAC+AGG 0.436158 1.2:+34527766 None:intergenic
CTGAAAGGCGCTCGTGACTT+GGG 0.436945 1.2:+34528615 None:intergenic
TTGTTTGGTTCCGCCGCCTA+AGG 0.437102 1.2:-34533971 MS.gene040711:CDS
CTCTGGTGGTTTCCTGGTGG+TGG 0.445634 1.2:-34533829 MS.gene040711:CDS
TCTGAAAAGCTGAACAAGAT+AGG 0.447938 1.2:-34528587 MS.gene040711:intron
CTACTAAGAGGCCATCTGAT+AGG 0.448095 1.2:+34533937 None:intergenic
CTAGCCCTAGGTTTGTGTAC+TGG 0.452424 1.2:+34527516 None:intergenic
AACAACTGCCATTTCCTTCA+GGG 0.458335 1.2:-34531015 MS.gene040711:CDS
GATCGTCTTCTTCGCTCAAA+TGG 0.459443 1.2:-34528929 MS.gene040711:CDS
ACTTGTATACAGTTCTTAAG+TGG 0.464593 1.2:+34528671 None:intergenic
CATATATCTACCCCAGTGTC+AGG 0.465947 1.2:+34534123 None:intergenic
AACCACCAGAGATGATCCTT+TGG 0.471865 1.2:+34533841 None:intergenic
TTTGTTCTGCATTCTGCTGA+AGG 0.474756 1.2:+34528747 None:intergenic
GATATACTCATTAAACTTCA+AGG 0.474981 1.2:+34534098 None:intergenic
CTGCCTTTGATTCTAAATCT+GGG 0.488807 1.2:-34534548 MS.gene040711:CDS
GACTGGTGATTTACGTTCTG+CGG 0.489853 1.2:-34531206 MS.gene040711:CDS
AGAGGATATCATGCTGGAGA+TGG 0.496478 1.2:-34527483 MS.gene040711:CDS
GGATCGTCTTGCACGGCCAC+TGG 0.497371 1.2:-34527462 MS.gene040711:intron
CCTTGGTAATTCCTGACACT+GGG 0.498357 1.2:-34534134 MS.gene040711:CDS
AAGAAGATACGCTGAAAAGC+TGG 0.500896 1.2:+34531147 None:intergenic
AGAGAACAAAGAAAAGAAGA+TGG 0.501740 1.2:-34527059 MS.gene040711:CDS
TATCAGATGGCCTCTTAGTA+GGG 0.502303 1.2:-34533935 MS.gene040711:CDS
GGAAGGTGAGAGATGTAAAG+AGG 0.503623 1.2:+34534453 None:intergenic
TCCATCCAAAGGATCATCTC+TGG 0.505245 1.2:-34533846 MS.gene040711:CDS
CACTTACCGCAAAACTCCCT+TGG 0.507698 1.2:-34534151 MS.gene040711:CDS
AATGAAGAAGGAGAGGAAGA+AGG 0.507870 1.2:+34534432 None:intergenic
CAAGTTCTGGATCTTGGCTG+TGG 0.512542 1.2:-34531175 MS.gene040711:CDS
TTAGTAGGGATTATGTTTGG+AGG 0.514597 1.2:-34533921 MS.gene040711:CDS
CCTTGTCTGGAATTTATGAC+CGG 0.514633 1.2:-34527723 MS.gene040711:CDS
AAGAAGGAGAGGAAGAAGGA+AGG 0.516792 1.2:+34534436 None:intergenic
AAGGTGTTCTTCATGCCTGC+AGG 0.523680 1.2:+34527742 None:intergenic
CAAACATAATCCCTACTAAG+AGG 0.526307 1.2:+34533925 None:intergenic
ACTGGTGATTTACGTTCTGC+GGG 0.530564 1.2:-34531205 MS.gene040711:CDS
TTGCCCAGATTTAGAATCAA+AGG 0.533970 1.2:+34534545 None:intergenic
TGTCAAAGGAGGCCAAAATT+GGG 0.535636 1.2:-34533869 MS.gene040711:CDS
TGTTTCTAGAAAACAAGAGC+TGG 0.539783 1.2:-34534028 MS.gene040711:CDS
GTGTTGTTGTTGAATGAAGA+AGG 0.541421 1.2:+34534420 None:intergenic
CCCTTGGTAATTCCTGACAC+TGG 0.541509 1.2:-34534135 MS.gene040711:CDS
GGTTTGTGTACTGGGAAAAG+AGG 0.547984 1.2:+34527525 None:intergenic
GCGGAACCAAACAAAACAAA+CGG 0.549143 1.2:+34533980 None:intergenic
CTTGTATACAGTTCTTAAGT+GGG 0.549205 1.2:+34528672 None:intergenic
TGAAAGGCGCTCGTGACTTG+GGG 0.551470 1.2:+34528616 None:intergenic
TGCATTCTGCTGAAGGCAGG+AGG 0.551507 1.2:+34528754 None:intergenic
AGACATAGTTCGAATATCCA+AGG 0.552080 1.2:+34531123 None:intergenic
TATATTAGAGGATATCATGC+TGG 0.556437 1.2:-34527489 MS.gene040711:CDS
AATATGATTACAAATGAGAC+TGG 0.557833 1.2:-34531223 MS.gene040711:CDS
CCAAAATTGGGTCCATCCAA+AGG 0.558669 1.2:-34533857 MS.gene040711:CDS
TTGAAATGAGTGCCACCACC+AGG 0.564927 1.2:+34533817 None:intergenic
CTAATATACAACCTAGCCCT+AGG 0.565807 1.2:+34527504 None:intergenic
ACTTGACTACAGCAATGTGT+TGG 0.565940 1.2:-34528832 MS.gene040711:CDS
ACCAACTTATCCCAAATGAC+AGG 0.566105 1.2:+34528857 None:intergenic
TGGGTAATTACCGTTAGAAG+AGG 0.569025 1.2:+34534395 None:intergenic
AACAGAAATACGCAACGTGA+TGG 0.574714 1.2:-34527836 MS.gene040711:CDS
ATTATAAAATACCTATCAGA+TGG 0.575123 1.2:-34533948 MS.gene040711:CDS
GTAATGAATGTAGTTCCTGC+AGG 0.579842 1.2:-34527757 MS.gene040711:CDS
CTTGTCTGGAATTTATGACC+GGG 0.580796 1.2:-34527722 MS.gene040711:CDS
TCTGGATCTTGGCTGTGGTG+TGG 0.587155 1.2:-34531170 MS.gene040711:CDS
ACACATCTTGCTGATGTCAA+AGG 0.587482 1.2:-34533883 MS.gene040711:CDS
ACCAGAGATGATCCTTTGGA+TGG 0.587544 1.2:+34533845 None:intergenic
TGTAAGAAACATCGTGACAA+GGG 0.589365 1.2:+34534076 None:intergenic
AGGAAAGTTGTTCAATGCAA+CGG 0.592106 1.2:+34527786 None:intergenic
GAAAGGCGCTCGTGACTTGG+GGG 0.593148 1.2:+34528617 None:intergenic
GGGTAATTACCGTTAGAAGA+GGG 0.594020 1.2:+34534396 None:intergenic
GCATTCTGCTGAAGGCAGGA+GGG 0.597951 1.2:+34528755 None:intergenic
AGACTCATCATCTACATCAC+AGG 0.601167 1.2:+34528712 None:intergenic
CAGTACACAAACCTAGGGCT+AGG 0.602499 1.2:-34527515 MS.gene040711:CDS
CATCTCTGGTGGTTTCCTGG+TGG 0.603360 1.2:-34533832 MS.gene040711:CDS
ATCATTTCAAATGACCCTGA+AGG 0.604755 1.2:+34531001 None:intergenic
TTAAGTGGGATATTCCATGA+AGG 0.609573 1.2:+34528686 None:intergenic
ATGTAAGAAACATCGTGACA+AGG 0.611925 1.2:+34534075 None:intergenic
GTTGTTGAATGAAGAAGGAG+AGG 0.612306 1.2:+34534425 None:intergenic
ATATACTCATTAAACTTCAA+GGG 0.612812 1.2:+34534099 None:intergenic
ATTCAATTTGCATTAGAGCG+AGG 0.614834 1.2:-34531070 MS.gene040711:CDS
GACATAGTTCGAATATCCAA+GGG 0.618179 1.2:+34531124 None:intergenic
AACAACACTCCCTCTTCTAA+CGG 0.620325 1.2:-34534405 MS.gene040711:intron
TGGAGATGGATCGTCTTGCA+CGG 0.620920 1.2:-34527469 MS.gene040711:CDS
TTGGAGACTGATGAATGTCA+AGG 0.624402 1.2:-34527860 MS.gene040711:CDS
CCGGTCATAAATTCCAGACA+AGG 0.626956 1.2:+34527723 None:intergenic
TTTCCCAGTACACAAACCTA+GGG 0.629461 1.2:-34527520 MS.gene040711:CDS
CCCAGTGTCAGGAATTACCA+AGG 0.646751 1.2:+34534134 None:intergenic
GTACTGGGAAAAGAGGTAGT+TGG 0.648124 1.2:+34527532 None:intergenic
TGAACTCGAATAACAATGGG+AGG 0.652659 1.2:-34534588 None:intergenic
ATCCAAAGGATCATCTCTGG+TGG 0.653009 1.2:-34533843 MS.gene040711:CDS
TGGCACTCATTTCAAGAATG+GGG 0.658477 1.2:-34533809 MS.gene040711:CDS
CATCTTGCTGATGTCAAAGG+AGG 0.661435 1.2:-34533880 MS.gene040711:CDS
TTGTCTGGAATTTATGACCG+GGG 0.671528 1.2:-34527721 MS.gene040711:CDS
AATGTGACTCTACATCCCAA+AGG 0.673432 1.2:+34527086 None:intergenic
GAAAAGTTCCAATCAAACCC+CGG 0.678902 1.2:+34527704 None:intergenic
CCAGTGTCAGGAATTACCAA+GGG 0.688330 1.2:+34534135 None:intergenic
ACAAGTCAGAAATTCTAATG+CGG 0.689409 1.2:-34528654 MS.gene040711:CDS
CTTGGTAATTCCTGACACTG+GGG 0.694229 1.2:-34534133 MS.gene040711:CDS
TGTAAAAGATCATATGTACG+AGG 0.751315 1.2:+34527557 None:intergenic
GGGCATCTGAGTACATACAG+AGG 0.772206 1.2:-34533789 MS.gene040711:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr1.2 gene 34527015 34534595 34527015 ID=MS.gene040711
chr1.2 mRNA 34527015 34534595 34527015 ID=MS.gene040711.t1;Parent=MS.gene040711
chr1.2 exon 34534406 34534595 34534406 ID=MS.gene040711.t1.exon1;Parent=MS.gene040711.t1
chr1.2 CDS 34534406 34534595 34534406 ID=cds.MS.gene040711.t1;Parent=MS.gene040711.t1
chr1.2 exon 34533790 34534204 34533790 ID=MS.gene040711.t1.exon2;Parent=MS.gene040711.t1
chr1.2 CDS 34533790 34534204 34533790 ID=cds.MS.gene040711.t1;Parent=MS.gene040711.t1
chr1.2 exon 34530963 34531252 34530963 ID=MS.gene040711.t1.exon3;Parent=MS.gene040711.t1
chr1.2 CDS 34530963 34531252 34530963 ID=cds.MS.gene040711.t1;Parent=MS.gene040711.t1
chr1.2 exon 34528588 34528974 34528588 ID=MS.gene040711.t1.exon4;Parent=MS.gene040711.t1
chr1.2 CDS 34528588 34528974 34528588 ID=cds.MS.gene040711.t1;Parent=MS.gene040711.t1
chr1.2 exon 34527697 34527943 34527697 ID=MS.gene040711.t1.exon5;Parent=MS.gene040711.t1
chr1.2 CDS 34527697 34527943 34527697 ID=cds.MS.gene040711.t1;Parent=MS.gene040711.t1
chr1.2 exon 34527463 34527601 34527463 ID=MS.gene040711.t1.exon6;Parent=MS.gene040711.t1
chr1.2 CDS 34527463 34527601 34527463 ID=cds.MS.gene040711.t1;Parent=MS.gene040711.t1
chr1.2 exon 34527015 34527173 34527015 ID=MS.gene040711.t1.exon7;Parent=MS.gene040711.t1
chr1.2 CDS 34527015 34527173 34527015 ID=cds.MS.gene040711.t1;Parent=MS.gene040711.t1
Gene Sequence

>MS.gene040711

ATGGGAGGTTTTGGCATTATTGGTTCTGCCTTTGATTCTAAATCTGGGCAAATCATAATGGCTTCTTTACTTCTCATGATTGTTTCCTTTTATGTCGGTACTCTTTTTGGTAACAATACTCCTCTTTACATCTCTCACCTTCCTTCTTCCTCTCCTTCTTCATTCAACAACAACACTCCCTCTTCTAACGGTAATTACCCAATTTCATATCAATTTCATTTAATATCTATGAAGCACCGACACGACACCAACACATATAATTACACTGACTTACGTGATTTTCTCAAATTATTAGCGGTTTTAGTGTGTCAATGTTTGTGTCGTGTTTGGTGTCCGTGTCCGTCCTTCAAATATGCTACTTTCTGACTCACTCATATGCAAATTTTTACAGGAACTTCACGATTTAGTAACAAAGTTGCTCTCACTTACCGCAAAACTCCCTTGGTAATTCCTGACACTGGGGTAGATATATGTCCCTTGAAGTTTAATGAGTATATCCCTTGTCACGATGTTTCTTACATTGCAACATTGATGTCTCATCTTGATGTTTCTAGAAAACAAGAGCTGGAGAGACACTGTCCTCCACTCGAAAACCGTTTGTTTTGTTTGGTTCCGCCGCCTAAGGATTATAAAATACCTATCAGATGGCCTCTTAGTAGGGATTATGTTTGGAGGAGTAATGTGAATCATACACATCTTGCTGATGTCAAAGGAGGCCAAAATTGGGTCCATCCAAAGGATCATCTCTGGTGGTTTCCTGGTGGTGGCACTCATTTCAAGAATGGGGCATCTGAGTACATACAGAGGTACCTATCTATACTTCTTTGGATGATTGATTACAACTTCATTTTTTTTTGCGTTGGATGTGTTGTAAGACTAGACATGATATGATTTGTAATGACAACATTAGAAAGAGAGAGAGTTCGGGTAACACCTATAGTAGAAAAGAGAGTGGAAACCAGGCTTAAGTGGTTTGAGCATGTATAGAGAAAACTTTTAGATTTTGTAGTAAGGAGCGTAGTTAGGTCACTAGAGGCAGAGGTAGACCTAGAAAAACTTTAAGAGACATTGTTTGGAAAGATTTAGAGATTAATGAGTTGGATTCAAATATGGTTTATGATAGAACATTATTGCGTAATTTTATCCATGTAGCCGACCCCACTTAGTGGGATAAGGCTTGGTTGTTGCTGTATGAATTCTTGCGTAAGACTAGACATGACAGGGTTAGAAATGACAACATTAGAGAGTTGTGGTAGCACCTATAGTAAAAAAGATGGGGGAAACTAGGTTTAGTTGATTTGGGCATGTAGAGAGAAAACCTGTAGATTATGTAGTAAGGAGAGCAAATCAGATGGAGATAGTCAGATCACTAAAGGTAGAGGTAGACTTAGAAAAAATTTAGAGATTAATGAGTTGGATTCAAATATGGTTTATGATAGAACATTATTGCGTAATTTGATCAATGTAGCCGACCCAACTTAGTGGGATAAGGCTTGATTGTTTGCTGCATGAATTCTTGCGCGAGATAAATATTTTGAAATCAGATTGAGTGTGGCTCAATGTTGTCAAACACGGTGATACTATGGCGGAGTGCGGTGATGGAATTTTTTACAACCACCATGGCCAACATGTGAAAGATGGCACCGCCATGGCATTTTGTGATATGTGAACATATGATCTATTTCATATTTGAAGTAGATTCTTCTATAAATTAAGATTGAGATAACTATGTGAGAGAGCAGGTAAAGATGAGTAGAGTAATGCAGATGTAAATTTTTATCTCTTTTTGATAGCAATATATTTATACCCTGTGATTTGGGTTTACTGAGAATTCCTTATCTCGAGCTAGGTTCTTCTGCAAATAATTTGTGCATTTGTTTATTGAGCTTAGATTTTCTTCTTTTGCAATTACATGTTATGCTTTATTTCTTTGGAAAACTAAATAATCTTTTTACCCTGATCGTATTGAATTATTTGGAAATTATTCTTAAGATAATATGTGACAAATTGATTGGTGTTGAATGGAAAATGACGTGACTGTCTGATTTTTAATTGTCTTTCAAAGGTGTAATCATATGGTCACCAAGCAAACTGCGACTCACCTGTTATTTTGTTTAAAACATTAGATGGGAGAAAAGACAATGAAAGGAGAAATATTGTTTGAAATTGAAATTAAGAGAAATTTTTGGTCTTCAATTTCTGTTCAAATAATTAAAAGTTTCAAACTTTAAAGCTTTGAGAGTTAGGAGGGGATGGCTTTGGAGGAAAGCTAGGGAGGGAGGCTAAACACCCGTATATGGGGGAACTAAAATAAAAATGCGAGGAGGACTTTGCCGGGTTTAAAAGAAACACCGAACTCTTTCCGTCCCCTCCTTCTCTTTCTAAAAAGTCTAAAACAAGGGGATAACTTATCTTAAATTCTCTTTCGTCCTTCTCTCCTCTCACCTCCAGGCACCCATCCCAAACCAAGCCTTAAGATCTTCTTTTCTTTCTATTTTTTTTTTTTCTCAATCTAAACCTAGTGCTAGCGCTCCCTGAGCCTTGAGGCCTGCCCTGACCCTGGTCAGTCTCTGGGACCCACTCACATAAACTTCTCTCGGTGTTAAATCCAAAAATAAAAAAAAAAACTAGTGTTAAGAAGTTAAAGTAACTATGTGTAATCCAGAAGATAATCAGTCACGGCTGACCACAGAAACTTCTTTCCTTATGTTTCTGAATTCTGAGACATCTGTTTTGAGTACGATTTCCAATAAAAGAAAGTGTTATAAAAAAAAATTATGTTACAACGTTGTAGTAAAGAGGTACGCGCACAATAGACTAAAATTATTGGAGTCAATGGAACCACAAGGGTGTGTTTATTTTGAAAATGGTGCCTCAGGAGTCAACTTAATGAAGGAAAAGTTGTGGTTGGCACATTGGAATGAATCCCTTTTCTCTCTGGCTTACTTTTGGACTTATGGGCTTAATACAAAAATCATCGTAAAAAATTGAATGCTGTTTGTAGATACTACCTATTTCAGGCCATTGCTTTGTTGCAATTTGTAGTTAGTTTGTGCTATTGAAACAGACTGAAACCAGATGCAGCTAACTGATATTTTTAAGGTTACATACACCGGTGAGAGGGAGAGAGGGGAGGGAAAGCTAATCTTGAGTCTTGACATTTTATTCATACATAAATGGTCAATATCAGTTTCAACTTTACTTGAAAGTTTTAAGTAAAATCAATTTCTACCTATCTTGCAATTATTTTGCTTGGTGCTATAACTTGAGCATGGAATGTTTGTATGTTGTGTGAGTAGTGCAAGATACAACTGTCAGTCTTTTGATGGCTTTACAAATGCAGGATAGGAAATATGATTACAAATGAGACTGGTGATTTACGTTCTGCGGGCATAGTTCAAGTTCTGGATCTTGGCTGTGGTGTGGCCAGCTTTTCAGCGTATCTTCTTCCCTTGGATATTCGAACTATGTCTTTTGCTCCCAAGGATGGTCATGAAAACCAGATTCAATTTGCATTAGAGCGAGGAATAGGTGCAATGATCTCCGCCATGTCCACAAAACAACTGCCATTTCCTTCAGGGTCATTTGAAATGATTCACTGTTCAAGATGCCGTATAGACTTTCATGAAAATGGTAATTGGCTTTCCTTATGATGTTTATATATATTGGCTTTCCTTTCGAGAGGAGGGAAATTGAGTGGAGAGAAATTGAGAGGAAGTTTTGTTTACTTTTGTTTCATTGCAAAATAACACAAGAAAGGAAAAATTGGTGTGGGACACACCTCTCGCCAAGTGGAGATGTAACACCAATTTCAAGTAGACATTCACTCTTTCCAGCTATACTAATCTAATTATCTATCCTCTGTTGTGGGGTTCACTTGATTCTTCTTATTTTGTCAAGGGTAAATATGACATTATATCAATTATTCATTTTTTTAATTTTCATTTTAATTGTTGTCCAACCAAACAATTATAGAGAAAATTGAACTTTTCTCTGCACCTAAACGAAGCTTTGGTTGACAACTAGAATGTGAACTTATTCGTAGAGTAAAATGGTATTTTGTCTAGTTTCGAAATGTTTTTAGCTCTCATTTGTTTATGATATTTAATTCCTTTGGCACACTTCTTGAACGCAGTGGGTGATCTCCTCGACCCTTGCATTGCCGTAACTAGGTTCCTGCTACTTCAACACAGGGTTCTGCATATTCTTAAGCTTGAAATTCTCTCCTTGAAATGATTGCTATAATTTTCCATTTCTTTCCCGGTGAGAGTTCTGGCAGATCTAACCAATTTGTTAGGGACCAAGAATTAGGATGGAAATAAAGAATCTTAATATTAAAAAATTAAAAGAATATTAATAATATAATTCTGCCCATTGGGTTCTCCTTTACAAAAGATCTCTCCTTTTCCCTCTCATATCAAATGCACAGTATTCTATTTTCTTACTGTATTTCTCCTATTTATATATGATACATCTTATCTAATTGACCAACTACTGACTAATCCTCATTACTACCCTTTATCTTTATCCTAACAGCTTGATGTTAAACGTGTTTGATTCAGTCCTTTTTTTTTGAAAATCTTATTTATTGTTAATACATGCCTGATATAGCTAAAAGAAGTACTTTTGTGTTTACAAATTGTGATATTTTCTAAAACCAAAATGTTGGACAGCTTTCCATTTATGTATCACTGCTGTGCTCCAAAGTTGTTTAATTAGTTTGTGTTTTACCATAGTGAAATTTACTAATAACATTGATCTCAAGCCAACCAATGCATTGCAACACGTTAGAAGTATGTTTTGTCTCTTCTTAAGATTGACTTCCATTACCATGTTTGAAATCTGTCCCTGACCATTTCTTTTTTGCTACCGTTCTACCGCAAAGCATTCATTTATCTGACGAGCGATGAGTGACATTTTAACATATCTCTTTACTTTTGTTTGTGCAAAATACCATTTTATGCTATTGCTCCCTTGTTCAAGAAGTATATTTTTGTTATATGATACTTTAAAAAAGTTGTGTATTTTTAAGGATAAAAGGAAATACCCTCCCTCAACTATAGGTAATTTTACAAAACATGTGTTGGAATCTTATTAAACTAGCTCCCTAAAAACATGTTTGTAAAGTTAACTTTTATGTATGTATTGAGTTGTTAGATTTTGAACCATAAATTTTTTTTTTATTTATTTTATTTTTTTTTTTTTTTTAGAATTGAGCTTTGTTGAAGTTATTTCTTGCATTTTGTCTAGTTTTTAATAATTCATCTGTAAGGATATATCATCAAGAGAAAATAAAACAGAAAACAACAAAACAAGAAGTACTGGCATCATTATTCTCATTGTAGTTTTGAATTGTATAGCTTAGAGGTTTTCTTTTTCCCTTATTAGCTATCATCATCATCATCATCATCATCATTTTTGTTTTTATTGAATGACCTGGTACAATATGTTCCAAAGGCTGCTATAAACACTGATGGGTGAACCCTTGCCCAATTAGACCCATTTATTATTTCTGTTATAGATTCAATCTGACTATCTTATAGAATAGATGAAATTTGTATATGTCAAAGCTATTATTGTTGGTGGGGTTGTTTGTTGCTAATTTATTTTGTTATACGCAGATGGGATTTTGCTGAAGGAATTGGATCGTCTTCTTCGCTCAAATGGTTATTTTGTTTATTCAGCACCACCTGCTTACAGAAAAGATAAAGATTTTCCTGTCATTTGGGATAAGTTGGTTAACTTGACTACAGCAATGTGTTGGAGACTCATTGCTCGTAAAGTTCAGACTGCAATATGGATTAAAGAAAATAATCATCCCTCCTGCCTTCAGCAGAATGCAGAACAAAAGCTTATAAATGCCTGTGATGTAGATGATGAGTCTAAACCTTCATGGAATATCCCACTTAAGAACTGTATACAAGTCAGAAATTCTAATGCGGAGTCTTACAAGCTACCCCCAAGTCACGAGCGCCTTTCAGTGTTTTCTGAAAAGCTGAACAAGATAGGTCTGCCAATTCTCTTTTGATATACTGTGCAAGAAGTTAATGTCCATTTTTCTTATTCTTAAATTATTCTTACCAATCTTGATGTGCACACTTACACCATAGATTTTTTGTATGCACATAATATAATTGTGTTGCAAATCTCAGATAGCATCATATACCATGCATGCTCTCAGAAATTTCATGAACTGTGATTCCAATGGTATTGCTAATGATACATATGCTTTATTATCATCATAACGATTTCATTAATCAAAGGCACAATCTTCACTAGAGCAGATATTAGCTTTGCTAAGATCATGTTTTGGTATATGATGTACAGCAGATATTAGCTTTTCTAAGATCACGTTTCTGAAAAAATTTGGCGTATTATCATAAGGTATATAGTTGAACACCTCCCGTAATTGCCTACGATATGTGTTTTCTTTTTAGTTCATTTACATACCGATATCAATATAGAAAGTCAATATCTTGTTTGTGCTCTGTTTTTTAGTTGAGATTGGAAAGGATCAATACATTTAAATCAAAAGGACGATATTGGACAACTGTTCAACTGGAAATCATAAGATAAAATAAACATGAATGTGGTGCACACAGAATTCCCTTTCAATCTAATGTGATGACCCTTCTAACCTTTTAAACAACAGGTATAAATCGAGATGAATTTACATCAGATTCTATCTTCTGGCAAGATCAGACTCGTCATTATTGGAGACTGATGAATGTCAAGGAAACAGAAATACGCAACGTGATGGATATGAATGCCTTTTATGGTGGATTTGCCGTTGCATTGAACAACTTTCCTGTTTGGGTAATGAATGTAGTTCCTGCAGGCATGAAGAACACCTTGTCTGGAATTTATGACCGGGGTTTGATTGGAACTTTTCATGATTGGTAATATTTTGCAACTAATATCATAAATAGTAAATACAATGTTAAAATGTGTATTATTAGTTGACTGCAGCTAATGTAGATATCTTTTACATCAGGTGTGAGCCATTTTCAAGTTATCCTCGTACATATGATCTTTTACATGCCAACTACCTCTTTTCCCAGTACACAAACCTAGGGCTAGGTTGTATATTAGAGGATATCATGCTGGAGATGGATCGTCTTGCACGGCCACTGGTAATTAATTACTTTTTTAAATGTTACCTTCATGGTTCTCTGCATGTATTATTGAAGTCGAAGTTCATGTGACTGAAATAAAATAAGAATTTTGGTAAATTCTGATATACCAAAATACATCGGTTATTCAATGAATCTAAAAAGTGAATTGACTCTTATAATAAGGAACGGATGTAGTACAAAGTTTTGTCAAATAGCGGCTATAGCTACACTATAGCAGTGCAACATAGTGTTTATTTGTCTTCCTGTGGATAAAGTTGATAACTTAGAGCTCACTTATTATCTGCAGGGATTTATTATCATTAGGGATGAAGAACATATTATATCAAGAATCAACGATTTAGCCCCAAAATTCCTTTGGGATGTAGAGTCACATTTGCTAGAGAACAAAGAAAAGAAGATGGAAACTGTTTTAATTTGTAGAAAAAAGTTTTGGGCAATCCTCTAA
Protein sequence

>MS.gene040711.t1

MGGFGIIGSAFDSKSGQIIMASLLLMIVSFYVGTLFGNNTPLYISHLPSSSPSSFNNNTPSSNGTSRFSNKVALTYRKTPLVIPDTGVDICPLKFNEYIPCHDVSYIATLMSHLDVSRKQELERHCPPLENRLFCLVPPPKDYKIPIRWPLSRDYVWRSNVNHTHLADVKGGQNWVHPKDHLWWFPGGGTHFKNGASEYIQRIGNMITNETGDLRSAGIVQVLDLGCGVASFSAYLLPLDIRTMSFAPKDGHENQIQFALERGIGAMISAMSTKQLPFPSGSFEMIHCSRCRIDFHENDGILLKELDRLLRSNGYFVYSAPPAYRKDKDFPVIWDKLVNLTTAMCWRLIARKVQTAIWIKENNHPSCLQQNAEQKLINACDVDDESKPSWNIPLKNCIQVRNSNAESYKLPPSHERLSVFSEKLNKIGINRDEFTSDSIFWQDQTRHYWRLMNVKETEIRNVMDMNAFYGGFAVALNNFPVWVMNVVPAGMKNTLSGIYDRGLIGTFHDWCEPFSSYPRTYDLLHANYLFSQYTNLGLGCILEDIMLEMDRLARPLGFIIIRDEEHIISRINDLAPKFLWDVESHLLENKEKKMETVLICRKKFWAIL