AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene001161

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001161.t1 MTR_4g107630 80.676 207 29 3 1 201 1 202 1.86e-105 304
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001161.t1 AT5G62720 54.286 140 61 2 47 184 58 196 1.17e-46 154
MS.gene001161.t1 AT5G62720 50.575 174 77 4 47 212 58 230 1.83e-46 154
MS.gene001161.t1 AT3G47980 56.849 146 55 1 56 193 77 222 1.78e-45 152

Find 70 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGTGGTAGTACCAAATTTA+TGG 0.147539 8.2:-18112021 MS.gene001161:CDS
GCAGAAGTACAGTATGTTTA+TGG 0.153489 8.2:-18110787 MS.gene001161:intron
CAGTATATCAAATTGGAATT+TGG 0.215578 8.2:+18109983 None:intergenic
ATGTCTTCTGTAATTGTTTC+CGG 0.215984 8.2:-18112041 MS.gene001161:CDS
GGAATGAGTGGAAGAGGATT+TGG 0.281069 8.2:+18111827 None:intergenic
ATTTGCAGCAATGGCCATAT+TGG 0.282337 8.2:-18111213 MS.gene001161:CDS
TTGTGCAGCCATTGGTGTTT+TGG 0.288656 8.2:-18110754 MS.gene001161:CDS
CTGATCCATCTTTCCCAATA+TGG 0.299857 8.2:+18111199 None:intergenic
ACGTGGCCTCACCCTCCATC+TGG 0.304995 8.2:-18111866 MS.gene001161:CDS
TGACAACGGTACCATAAATT+TGG 0.325955 8.2:+18112010 None:intergenic
CAATGGCTGCACAACCTACT+TGG 0.345485 8.2:+18110763 None:intergenic
AAGAGGGAATGTGATTATTA+AGG 0.350305 8.2:-18111898 MS.gene001161:CDS
TTTGCAGCAATGGCCATATT+GGG 0.365439 8.2:-18111212 MS.gene001161:CDS
CACCCTCAGCCCCTTCTGCC+CGG 0.367068 8.2:-18111106 MS.gene001161:CDS
AAATTGGAATTTGGAAGATA+TGG 0.368448 8.2:+18109992 None:intergenic
CACCCTCCATCTGGGAGAAC+TGG 0.369226 8.2:-18111857 MS.gene001161:CDS
GAATGAGTGGAAGAGGATTT+GGG 0.381725 8.2:+18111828 None:intergenic
AAAACCAATCTCTTATTCTT+CGG 0.383257 8.2:+18111957 None:intergenic
ATTCCTTCAGTGACATTCTC+TGG 0.388063 8.2:-18111809 MS.gene001161:CDS
GGATCTTCAGTATATCAAAT+TGG 0.392498 8.2:+18109976 None:intergenic
AATAATGGTTTGAAAGGAAG+AGG 0.393895 8.2:-18111915 MS.gene001161:CDS
ACATATCTCCGTTGCTAGCC+AGG 0.394603 8.2:-18110028 MS.gene001161:CDS
GACATTCTCTGGCCTTCTGC+AGG 0.394844 8.2:-18111798 MS.gene001161:intron
ATGTTAAAAGATGGTGATAA+TGG 0.407105 8.2:+18111984 None:intergenic
TTGAGCTAAGAATATTCTCC+AGG 0.411526 8.2:+18109954 None:intergenic
GGCAGAAGGGGCTGAGGGTG+AGG 0.416383 8.2:+18111109 None:intergenic
CAAACCGAAGAATAAGAGAT+TGG 0.426795 8.2:-18111961 MS.gene001161:CDS
TCAATCACAGTTGCACCATT+AGG 0.429248 8.2:-18111155 MS.gene001161:CDS
ACTGTGATTGAGAGTCCTTT+TGG 0.443290 8.2:+18111167 None:intergenic
GCACTCTTGGCTAGCAATCC+AGG 0.449810 8.2:+18110714 None:intergenic
TACCCGGGCAGAAGGGGCTG+AGG 0.452991 8.2:+18111103 None:intergenic
AGCAGCAACACTAGCACTCT+TGG 0.457034 8.2:+18110701 None:intergenic
ACCCTCAGCCCCTTCTGCCC+GGG 0.469153 8.2:-18111105 MS.gene001161:intron
TTCGGTTTGATGTTAAAAGA+TGG 0.478176 8.2:+18111975 None:intergenic
CAAGTAGGTTGTGCAGCCAT+TGG 0.487463 8.2:-18110762 MS.gene001161:CDS
GATCAGTTATTGACACCAAA+AGG 0.488111 8.2:-18111182 MS.gene001161:CDS
AGAGCAGACACTGCTCCTAA+TGG 0.490696 8.2:+18111140 None:intergenic
TTTAGCAATAATGGTTTGAA+AGG 0.491664 8.2:-18111921 MS.gene001161:CDS
ATCAGGGGCATTTGCAGCAA+TGG 0.492588 8.2:-18111222 MS.gene001161:intron
CATAAATTTGGTACTACCAC+CGG 0.501343 8.2:+18112022 None:intergenic
AGGTTTCCAGTTCTCCCAGA+TGG 0.502717 8.2:+18111851 None:intergenic
CGTGGCCTCACCCTCCATCT+GGG 0.513595 8.2:-18111865 MS.gene001161:CDS
TTTCCAGTTCTCCCAGATGG+AGG 0.521215 8.2:+18111854 None:intergenic
TGGAATTTGGAAGATATGGC+AGG 0.521700 8.2:+18109996 None:intergenic
AATGGCCATATTGGGAAAGA+TGG 0.522770 8.2:-18111204 MS.gene001161:CDS
ACTGAAGGAATGAGTGGAAG+AGG 0.523502 8.2:+18111821 None:intergenic
AATAGTAGTACCCGGGCAGA+AGG 0.525314 8.2:+18111095 None:intergenic
AATGGCTGCACAACCTACTT+GGG 0.529946 8.2:+18110764 None:intergenic
TAGTAGTACCCGGGCAGAAG+GGG 0.552816 8.2:+18111097 None:intergenic
GTTCTCCCAGATGGAGGGTG+AGG 0.554854 8.2:+18111860 None:intergenic
GGATTTGCAATATTTGGACC+TGG 0.557125 8.2:-18110732 MS.gene001161:CDS
TTCCAGTTCTCCCAGATGGA+GGG 0.561076 8.2:+18111855 None:intergenic
TTTGATATACTGAAGATCCC+TGG 0.565785 8.2:-18109972 MS.gene001161:CDS
ATAGTAGTACCCGGGCAGAA+GGG 0.569371 8.2:+18111096 None:intergenic
AGTATGTTTATGGCCCAAGT+AGG 0.569674 8.2:-18110777 MS.gene001161:CDS
TATGGCAGGAGGATGGTCCC+TGG 0.580528 8.2:+18110010 None:intergenic
AATGTCACTGAAGGAATGAG+TGG 0.582208 8.2:+18111815 None:intergenic
ACCCGGGCAGAAGGGGCTGA+GGG 0.592231 8.2:+18111104 None:intergenic
ATAATGGTTTGAAAGGAAGA+GGG 0.595411 8.2:-18111914 MS.gene001161:CDS
TGAGCTAAGAATATTCTCCA+GGG 0.596755 8.2:+18109955 None:intergenic
TGGAAGATATGGCAGGAGGA+TGG 0.612408 8.2:+18110003 None:intergenic
GGATGGTCCCTGGCTAGCAA+CGG 0.614139 8.2:+18110020 None:intergenic
TGCAAATCCCAAAACACCAA+TGG 0.618790 8.2:+18110746 None:intergenic
AGGCCAGAGAATGTCACTGA+AGG 0.622535 8.2:+18111806 None:intergenic
CATATCTCCGTTGCTAGCCA+GGG 0.629836 8.2:-18110027 MS.gene001161:CDS
TCTTCTGTAATTGTTTCCGG+TGG 0.651325 8.2:-18112038 MS.gene001161:CDS
TGAGTGGAAGAGGATTTGGG+AGG 0.662152 8.2:+18111831 None:intergenic
AATTTGGAAGATATGGCAGG+AGG 0.674949 8.2:+18109999 None:intergenic
TATTAAGGCATCAAGCGACG+TGG 0.697251 8.2:-18111883 MS.gene001161:CDS
GGTGATAATGGTAATGACAA+CGG 0.705821 8.2:+18111996 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAGAATAATAAATAAAAAAT+AGG + chr8.2:18110230-18110249 None:intergenic 10.0%
!! ATTATAATAGTATTTCTTTG+AGG + chr8.2:18110473-18110492 None:intergenic 15.0%
!! GATAAATATCATTAATACAA+TGG - chr8.2:18110956-18110975 MS.gene001161:intron 15.0%
!! TAAATTCATCTTTCAAATAA+AGG + chr8.2:18110252-18110271 None:intergenic 15.0%
!!! AAAAAACTTTTTAAATGTGA+AGG - chr8.2:18110306-18110325 MS.gene001161:intron 15.0%
!!! TAATTTTATCAAATCATTTC+CGG + chr8.2:18111020-18111039 None:intergenic 15.0%
!!! TATTACTACTATTTCTTTTT+AGG - chr8.2:18110924-18110943 MS.gene001161:intron 15.0%
!! ACATAATAGTGAGATAAAAT+TGG + chr8.2:18110348-18110367 None:intergenic 20.0%
!! TAATGATATTTATCCCATTA+AGG + chr8.2:18110950-18110969 None:intergenic 20.0%
!! TCTATTTGTACAATCAATAA+AGG - chr8.2:18111591-18111610 MS.gene001161:intron 20.0%
!! TGTGTTTATAAAAATCATCA+GGG - chr8.2:18110762-18110781 MS.gene001161:CDS 20.0%
!!! AGATTGGTTTTAGATTATTT+GGG - chr8.2:18110055-18110074 MS.gene001161:CDS 20.0%
!!! ATGTTCATTGTTTTAAAAAC+CGG + chr8.2:18111726-18111745 None:intergenic 20.0%
!!! TTTGTTGGTTTAATATTTGA+TGG + chr8.2:18111422-18111441 None:intergenic 20.0%
! AAAACCAATCTCTTATTCTT+CGG + chr8.2:18110046-18110065 None:intergenic 25.0%
! AAATTGGAATTTGGAAGATA+TGG + chr8.2:18112011-18112030 None:intergenic 25.0%
! ATGTTAAAAGATGGTGATAA+TGG + chr8.2:18110019-18110038 None:intergenic 25.0%
! ATTACTATTCTATGCAACAA+CGG - chr8.2:18110278-18110297 MS.gene001161:intron 25.0%
! CAGTATATCAAATTGGAATT+TGG + chr8.2:18112020-18112039 None:intergenic 25.0%
! GTGTGTTTATAAAAATCATC+AGG - chr8.2:18110761-18110780 MS.gene001161:CDS 25.0%
! GTGTTTATAAAAATCATCAG+GGG - chr8.2:18110763-18110782 MS.gene001161:CDS 25.0%
! TAAACACACATCAAAACAAA+AGG + chr8.2:18110750-18110769 None:intergenic 25.0%
! TAATAAGTATATCCATCTTG+TGG + chr8.2:18110401-18110420 None:intergenic 25.0%
! TTTAAATTATCTCCACAAGA+TGG - chr8.2:18110386-18110405 MS.gene001161:intron 25.0%
! TTTAGCAATAATGGTTTGAA+AGG - chr8.2:18110079-18110098 MS.gene001161:CDS 25.0%
! TTTCATAAAATATGCTCTTG+TGG + chr8.2:18110500-18110519 None:intergenic 25.0%
!! AATAACTTCTCATTTGAAAC+TGG + chr8.2:18110573-18110592 None:intergenic 25.0%
!! GCTTCTCTATAAAATCATTT+TGG - chr8.2:18110600-18110619 MS.gene001161:intron 25.0%
!! GTGTACTTGTCAATAATTTT+TGG - chr8.2:18110694-18110713 MS.gene001161:CDS 25.0%
!!! ATTTCTTTTTAGGCCTTAAT+GGG - chr8.2:18110934-18110953 MS.gene001161:intron 25.0%
!!! GAGATTGGTTTTAGATTATT+TGG - chr8.2:18110054-18110073 MS.gene001161:CDS 25.0%
!!! TATTTCTTTTTAGGCCTTAA+TGG - chr8.2:18110933-18110952 MS.gene001161:intron 25.0%
!!! TATTTGGGTTTTAGCAATAA+TGG - chr8.2:18110070-18110089 MS.gene001161:CDS 25.0%
!!! TGAAACAAAAGCATTTAAGT+AGG + chr8.2:18111141-18111160 None:intergenic 25.0%
AACATTGAAGCAAAAATACC+TGG + chr8.2:18111364-18111383 None:intergenic 30.0%
AAGAGGGAATGTGATTATTA+AGG - chr8.2:18110102-18110121 MS.gene001161:CDS 30.0%
AATAATGGTTTGAAAGGAAG+AGG - chr8.2:18110085-18110104 MS.gene001161:CDS 30.0%
ACATTGAAGCAAAAATACCT+GGG + chr8.2:18111363-18111382 None:intergenic 30.0%
AGTTAAACTGGATAGTTTGA+TGG + chr8.2:18111659-18111678 None:intergenic 30.0%
ATAATGGTTTGAAAGGAAGA+GGG - chr8.2:18110086-18110105 MS.gene001161:CDS 30.0%
ATAGTAGTAATAGTAGTACC+CGG + chr8.2:18110916-18110935 None:intergenic 30.0%
ATGTCTTCTGTAATTGTTTC+CGG - chr8.2:18109959-18109978 MS.gene001161:CDS 30.0%
CTCATTGCAAGTTAACTAAT+TGG - chr8.2:18111855-18111874 MS.gene001161:CDS 30.0%
GGATCTTCAGTATATCAAAT+TGG + chr8.2:18112027-18112046 None:intergenic 30.0%
GTAAACTAGTAGTAATGAAC+CGG + chr8.2:18111793-18111812 None:intergenic 30.0%
TAAACTAGTAGTAATGAACC+GGG + chr8.2:18111792-18111811 None:intergenic 30.0%
TCTTGCTGAACAAAAAAAAC+AGG + chr8.2:18111885-18111904 None:intergenic 30.0%
! CACGATATCACAAATTTTGT+TGG + chr8.2:18111437-18111456 None:intergenic 30.0%
! CGGGTACTAAAAATTGTTTT+CGG + chr8.2:18111773-18111792 None:intergenic 30.0%
! GTACTAAAAATTGTTTTCGG+AGG + chr8.2:18111770-18111789 None:intergenic 30.0%
! TTCGGTTTGATGTTAAAAGA+TGG + chr8.2:18110028-18110047 None:intergenic 30.0%
!! CAATTAGTTAACTTGCAATG+AGG + chr8.2:18111857-18111876 None:intergenic 30.0%
!!! CGAAAACAATTTTTAGTACC+CGG - chr8.2:18111771-18111790 MS.gene001161:intron 30.0%
!!! CTGGTTCAGTTTTAAAACAT+TGG + chr8.2:18111636-18111655 None:intergenic 30.0%
!!! GTTTTGGGATTTGCAATATT+TGG - chr8.2:18111262-18111281 MS.gene001161:intron 30.0%
!!! TGTTTTTTTTGTTCAGCAAG+AGG - chr8.2:18111884-18111903 MS.gene001161:CDS 30.0%
AAAAAATAGGAACCTGCAGA+AGG + chr8.2:18110217-18110236 None:intergenic 35.0%
ACAGCATCAATGAAAAGCAA+TGG + chr8.2:18111474-18111493 None:intergenic 35.0%
ACTTCTGCATAATCACACTT+AGG + chr8.2:18111201-18111220 None:intergenic 35.0%
AGTTTCAACAGTTGAGTTTC+TGG - chr8.2:18111496-18111515 MS.gene001161:intron 35.0%
ATTGAAGCAAAAATACCTGG+GGG + chr8.2:18111361-18111380 None:intergenic 35.0%
CAAACCGAAGAATAAGAGAT+TGG - chr8.2:18110039-18110058 MS.gene001161:CDS 35.0%
CAATTTAGACACTGAAGCAT+TGG + chr8.2:18111105-18111124 None:intergenic 35.0%
CATAAATTTGGTACTACCAC+CGG + chr8.2:18109981-18110000 None:intergenic 35.0%
CATTGAAGCAAAAATACCTG+GGG + chr8.2:18111362-18111381 None:intergenic 35.0%
CTTGTTTATGGTTCAATCGT+TGG - chr8.2:18111694-18111713 MS.gene001161:intron 35.0%
GATCAGTTATTGACACCAAA+AGG - chr8.2:18110818-18110837 MS.gene001161:intron 35.0%
GCATATCAATGTTGTGATGA+TGG + chr8.2:18110629-18110648 None:intergenic 35.0%
TAGTAGTAATAGTAGTACCC+GGG + chr8.2:18110915-18110934 None:intergenic 35.0%
TGACAACGGTACCATAAATT+TGG + chr8.2:18109993-18110012 None:intergenic 35.0%
TGTCTACAGTTCAGTTAAAC+TGG + chr8.2:18111671-18111690 None:intergenic 35.0%
TTTGATATACTGAAGATCCC+TGG - chr8.2:18112028-18112047 MS.gene001161:CDS 35.0%
! CTGTAGACAGTTCTTGTTTA+TGG - chr8.2:18111682-18111701 MS.gene001161:intron 35.0%
! GCAGAAGTACAGTATGTTTA+TGG - chr8.2:18111213-18111232 MS.gene001161:CDS 35.0%
! TTCTGGTATGTTTTGTATCC+CGG - chr8.2:18111513-18111532 MS.gene001161:intron 35.0%
!! GGTGATAATGGTAATGACAA+CGG + chr8.2:18110007-18110026 None:intergenic 35.0%
!!! TTTTTTTGTTCAGCAAGAGG+TGG - chr8.2:18111887-18111906 MS.gene001161:CDS 35.0%
AAAACATTGGACGCGTTTAC+TGG + chr8.2:18111623-18111642 None:intergenic 40.0%
AATGGCCATATTGGGAAAGA+TGG - chr8.2:18110796-18110815 MS.gene001161:intron 40.0%
AATGTCACTGAAGGAATGAG+TGG + chr8.2:18110188-18110207 None:intergenic 40.0%
AATTTGGAAGATATGGCAGG+AGG + chr8.2:18112004-18112023 None:intergenic 40.0%
AGTATGTTTATGGCCCAAGT+AGG - chr8.2:18111223-18111242 MS.gene001161:intron 40.0%
ATTCCTTCAGTGACATTCTC+TGG - chr8.2:18110191-18110210 MS.gene001161:intron 40.0%
ATTTGCAGCAATGGCCATAT+TGG - chr8.2:18110787-18110806 MS.gene001161:intron 40.0%
CGGTGGTAGTACCAAATTTA+TGG - chr8.2:18109979-18109998 MS.gene001161:CDS 40.0%
CTGATCCATCTTTCCCAATA+TGG + chr8.2:18110804-18110823 None:intergenic 40.0%
GAAAAGCAATGGCATGCTTA+CGG + chr8.2:18111463-18111482 None:intergenic 40.0%
GAATGAGTGGAAGAGGATTT+GGG + chr8.2:18110175-18110194 None:intergenic 40.0%
GGATTTGCAATATTTGGACC+TGG - chr8.2:18111268-18111287 MS.gene001161:intron 40.0%
TCAATCACAGTTGCACCATT+AGG - chr8.2:18110845-18110864 MS.gene001161:intron 40.0%
TCTTCTGTAATTGTTTCCGG+TGG - chr8.2:18109962-18109981 MS.gene001161:CDS 40.0%
TGCAAATCCCAAAACACCAA+TGG + chr8.2:18111257-18111276 None:intergenic 40.0%
TGGAATTTGGAAGATATGGC+AGG + chr8.2:18112007-18112026 None:intergenic 40.0%
TTGAAGCAAAAATACCTGGG+GGG + chr8.2:18111360-18111379 None:intergenic 40.0%
TTTGCAGCAATGGCCATATT+GGG - chr8.2:18110788-18110807 MS.gene001161:intron 40.0%
! AAACTGGATAGTTTGATGGC+TGG + chr8.2:18111655-18111674 None:intergenic 40.0%
! AATGAGGAGCTCATTTTAGG+AGG + chr8.2:18111841-18111860 None:intergenic 40.0%
! ACTGTGATTGAGAGTCCTTT+TGG + chr8.2:18110836-18110855 None:intergenic 40.0%
! TCTGGTATGTTTTGTATCCC+GGG - chr8.2:18111514-18111533 MS.gene001161:intron 40.0%
! TGCAATGAGGAGCTCATTTT+AGG + chr8.2:18111844-18111863 None:intergenic 40.0%
!! ATGAGGAGCTCATTTTAGGA+GGG + chr8.2:18111840-18111859 None:intergenic 40.0%
AATGGCTGCACAACCTACTT+GGG + chr8.2:18111239-18111258 None:intergenic 45.0%
ACTGAAGGAATGAGTGGAAG+AGG + chr8.2:18110182-18110201 None:intergenic 45.0%
CGACACTGATACATTGACAC+CGG - chr8.2:18110998-18111017 MS.gene001161:intron 45.0%
GGAATGAGTGGAAGAGGATT+TGG + chr8.2:18110176-18110195 None:intergenic 45.0%
GTTCAATCGTTGGAACTGTC+CGG - chr8.2:18111704-18111723 MS.gene001161:intron 45.0%
! CTGGTATGTTTTGTATCCCG+GGG - chr8.2:18111515-18111534 MS.gene001161:intron 45.0%
! TATTAAGGCATCAAGCGACG+TGG - chr8.2:18110117-18110136 MS.gene001161:intron 45.0%
!! CATTTTAGGAGGGAGAGACA+TGG + chr8.2:18111830-18111849 None:intergenic 45.0%
!! TGTGCAGCCATTGGTGTTTT+GGG - chr8.2:18111247-18111266 MS.gene001161:intron 45.0%
!! TTGTGCAGCCATTGGTGTTT+TGG - chr8.2:18111246-18111265 MS.gene001161:intron 45.0%
AATAGTAGTACCCGGGCAGA+AGG + chr8.2:18110908-18110927 None:intergenic 50.0%
ACATATCTCCGTTGCTAGCC+AGG - chr8.2:18111972-18111991 MS.gene001161:CDS 50.0%
AGAGCAGACACTGCTCCTAA+TGG + chr8.2:18110863-18110882 None:intergenic 50.0%
AGCAGCAACACTAGCACTCT+TGG + chr8.2:18111302-18111321 None:intergenic 50.0%
AGGCCAGAGAATGTCACTGA+AGG + chr8.2:18110197-18110216 None:intergenic 50.0%
AGGTTTCCAGTTCTCCCAGA+TGG + chr8.2:18110152-18110171 None:intergenic 50.0%
ATAGTAGTACCCGGGCAGAA+GGG + chr8.2:18110907-18110926 None:intergenic 50.0%
CAAGTAGGTTGTGCAGCCAT+TGG - chr8.2:18111238-18111257 MS.gene001161:intron 50.0%
CAATGGCTGCACAACCTACT+TGG + chr8.2:18111240-18111259 None:intergenic 50.0%
CATATCTCCGTTGCTAGCCA+GGG - chr8.2:18111973-18111992 MS.gene001161:CDS 50.0%
TGAGTGGAAGAGGATTTGGG+AGG + chr8.2:18110172-18110191 None:intergenic 50.0%
TGGAAGATATGGCAGGAGGA+TGG + chr8.2:18112000-18112019 None:intergenic 50.0%
TTCCAGTTCTCCCAGATGGA+GGG + chr8.2:18110148-18110167 None:intergenic 50.0%
TTTCCAGTTCTCCCAGATGG+AGG + chr8.2:18110149-18110168 None:intergenic 50.0%
!! ATCAGGGGCATTTGCAGCAA+TGG - chr8.2:18110778-18110797 MS.gene001161:CDS 50.0%
GCACTCTTGGCTAGCAATCC+AGG + chr8.2:18111289-18111308 None:intergenic 55.0%
TAGAATGCATCCTGCTGCCC+CGG + chr8.2:18111535-18111554 None:intergenic 55.0%
TAGTAGTACCCGGGCAGAAG+GGG + chr8.2:18110906-18110925 None:intergenic 55.0%
! GACATTCTCTGGCCTTCTGC+AGG - chr8.2:18110202-18110221 MS.gene001161:intron 55.0%
AGAATGCATCCTGCTGCCCC+GGG + chr8.2:18111534-18111553 None:intergenic 60.0%
CACCCTCCATCTGGGAGAAC+TGG - chr8.2:18110143-18110162 MS.gene001161:intron 60.0%
GGATGGTCCCTGGCTAGCAA+CGG + chr8.2:18111983-18112002 None:intergenic 60.0%
GTTCTCCCAGATGGAGGGTG+AGG + chr8.2:18110143-18110162 None:intergenic 60.0%
TATGGCAGGAGGATGGTCCC+TGG + chr8.2:18111993-18112012 None:intergenic 60.0%
! ACTGACTCTGTTCACCCCCC+AGG - chr8.2:18111343-18111362 MS.gene001161:intron 60.0%
! GTTTTGTATCCCGGGGCAGC+AGG - chr8.2:18111522-18111541 MS.gene001161:intron 60.0%
ACGTGGCCTCACCCTCCATC+TGG - chr8.2:18110134-18110153 MS.gene001161:intron 65.0%
CGTGGCCTCACCCTCCATCT+GGG - chr8.2:18110135-18110154 MS.gene001161:intron 65.0%
ACCCGGGCAGAAGGGGCTGA+GGG + chr8.2:18110899-18110918 None:intergenic 70.0%
ACCCTCAGCCCCTTCTGCCC+GGG - chr8.2:18110895-18110914 MS.gene001161:intron 70.0%
CACCCTCAGCCCCTTCTGCC+CGG - chr8.2:18110894-18110913 MS.gene001161:intron 70.0%
GGCAGAAGGGGCTGAGGGTG+AGG + chr8.2:18110894-18110913 None:intergenic 70.0%
TACCCGGGCAGAAGGGGCTG+AGG + chr8.2:18110900-18110919 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 18109959 18112063 18109959 ID=MS.gene001161
chr8.2 mRNA 18109959 18112063 18109959 ID=MS.gene001161.t1;Parent=MS.gene001161
chr8.2 exon 18111799 18112063 18111799 ID=MS.gene001161.t1.exon1;Parent=MS.gene001161.t1
chr8.2 CDS 18111799 18112063 18111799 ID=cds.MS.gene001161.t1;Parent=MS.gene001161.t1
chr8.2 exon 18111106 18111239 18111106 ID=MS.gene001161.t1.exon2;Parent=MS.gene001161.t1
chr8.2 CDS 18111106 18111239 18111106 ID=cds.MS.gene001161.t1;Parent=MS.gene001161.t1
chr8.2 exon 18110658 18110805 18110658 ID=MS.gene001161.t1.exon3;Parent=MS.gene001161.t1
chr8.2 CDS 18110658 18110805 18110658 ID=cds.MS.gene001161.t1;Parent=MS.gene001161.t1
chr8.2 exon 18109959 18110122 18109959 ID=MS.gene001161.t1.exon4;Parent=MS.gene001161.t1
chr8.2 CDS 18109959 18110122 18109959 ID=cds.MS.gene001161.t1;Parent=MS.gene001161.t1
Gene Sequence

>MS.gene001161

ATGTCTTCTGTAATTGTTTCCGGTGGTAGTACCAAATTTATGGTACCGTTGTCATTACCATTATCACCATCTTTTAACATCAAACCGAAGAATAAGAGATTGGTTTTAGATTATTTGGGTTTTAGCAATAATGGTTTGAAAGGAAGAGGGAATGTGATTATTAAGGCATCAAGCGACGTGGCCTCACCCTCCATCTGGGAGAACTGGAAACCTCCCAAATCCTCTTCCACTCATTCCTTCAGTGACATTCTCTGGCCTTCTGCAGGTTCCTATTTTTTATTTATTATTCTCCTTTATTTGAAAGATGAATTTAATTACTATTACTATTCTATGCAACAACGGTATAAAAAAAACTTTTTAAATGTGAAGGTAAAAGAGCTGTACTTCCAATTTTATCTCACTATTATGTAACTTTGTTATATTAGTTTTTAAATTATCTCCACAAGATGGATATACTTATTAAACTTTTTAGTTATATATCTAATCTAAGTTATTTAAATACTTTGCAACTCCTCAAAGAAATACTATTATAATGACTCCACAAGAGCATATTTTATGAAAAAATTACTTTTTTTAAACAAAAAATGAGAATCTGAAAACAAAAAATCTAACCAGTTTCAAATGAGAAGTTATTTTTAGTAGCTTCTCTATAAAATCATTTTGGTTTCCATCATCACAACATTGATATGCTCTTAGATTGTCTTTTCAAATTATGTGTTTTTATTTTCTTAATTAGTGTACTTGTCAATAATTTTTGGTATGAAAATCTGATGACTTTATATGTTTCTCCTTTTGTTTTGATGTGTGTTTATAAAAATCATCAGGGGCATTTGCAGCAATGGCCATATTGGGAAAGATGGATCAGTTATTGACACCAAAAGGACTCTCAATCACAGTTGCACCATTAGGAGCAGTGTCTGCTCTCTTGTTTGCCTCACCCTCAGCCCCTTCTGCCCGGGTACTACTATTACTACTATTTCTTTTTAGGCCTTAATGGGATAAATATCATTAATACAATGGTATTAAGCATTGACTACGACGACACTGATACATTGACACCGGAAATGATTTGATAAAATTAAGTAATTGAATGTAATCGTATGTATCAGTGTCAGACATTAGACACACATTCGATTAGAAATACCAATGCTTCAGTGTCTAAATTGAGTTTCTTAAATACCTACTTAAATGCTTTTGTTTCACAGCTCTCTCTATATTCTTCGTTTAGAACTAAAATTACCTAAGTGTGATTATGCAGAAGTACAGTATGTTTATGGCCCAAGTAGGTTGTGCAGCCATTGGTGTTTTGGGATTTGCAATATTTGGACCTGGATTGCTAGCCAAGAGTGCTAGTGTTGCTGCTTGTATTGCTTACATGATTTACACTGACTCTGTTCACCCCCCAGGTATTTTTGCTTCAATGTTGCTACTTATTTGTGATTTGAAACAAGTATCTAGCTCCATCAAATATTAAACCAACAAAATTTGTGATATCGTGCAGCCGTAAGCATGCCATTGCTTTTCATTGATGCTGTTAAGTTTCAACAGTTGAGTTTCTGGTATGTTTTGTATCCCGGGGCAGCAGGATGCATTCTACTTTGCTTGATTGTAAGCAATCTATCTCTCTATTAATCTATTTGTACAATCAATAAAGGAACGATCCAGTAAACGCGTCCAATGTTTTAAAACTGAACCAGCCATCAAACTATCCAGTTTAACTGAACTGTAGACAGTTCTTGTTTATGGTTCAATCGTTGGAACTGTCCGGTTTTTAAAACAATGAACATGTCATCTTATAATTTTGTTTTCCTCCGAAAACAATTTTTAGTACCCGGTTCATTACTACTAGTTTACTTAATCTATAGCATCCATGTCTCTCCCTCCTAAAATGAGCTCCTCATTGCAAGTTAACTAATTGGTAGACCTGTTTTTTTTGTTCAGCAAGAGGTGGTTCTATACATGAAGCAAAATTTCAAATTCTGAGTCTGCTTTTCACAACTGTGATTGATTGCTACATATCTCCGTTGCTAGCCAGGGACCATCCTCCTGCCATATCTTCCAAATTCCAATTTGATATACTGAAGATCCCTGGAGAATATTCTTAG
Protein sequence

>MS.gene001161.t1

MSSVIVSGGSTKFMVPLSLPLSPSFNIKPKNKRLVLDYLGFSNNGLKGRGNVIIKASSDVASPSIWENWKPPKSSSTHSFSDILWPSAGAFAAMAILGKMDQLLTPKGLSITVAPLGAVSALLFASPSAPSARKYSMFMAQVGCAAIGVLGFAIFGPGLLAKSASVAACIAYMIYTDSVHPPARGGSIHEAKFQILSLLFTTVIDCYISPLLARDHPPAISSKFQFDILKIPGEYS