Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51071.t1 | XP_003608984.1 | 90.3 | 216 | 18 | 1 | 4 | 216 | 1 | 216 | 1.50E-98 | 369 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51071.t1 | G7JPV2 | 90.3 | 216 | 18 | 1 | 4 | 216 | 1 | 216 | 1.1e-98 | 369.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049711 | MS.gene51071 | -0.800892 | 1.16E-48 | -1.69E-46 |
| MS.gene050559 | MS.gene51071 | -0.811478 | 6.86E-51 | -1.69E-46 |
| MS.gene050945 | MS.gene51071 | -0.824473 | 7.92E-54 | -1.69E-46 |
| MS.gene051450 | MS.gene51071 | -0.80324 | 3.83E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene51071 | -0.80057 | 1.35E-48 | -1.69E-46 |
| MS.gene052533 | MS.gene51071 | -0.831327 | 1.78E-55 | -1.69E-46 |
| MS.gene053272 | MS.gene51071 | 0.810728 | 9.98E-51 | -1.69E-46 |
| MS.gene054142 | MS.gene51071 | -0.811442 | 6.99E-51 | -1.69E-46 |
| MS.gene056082 | MS.gene51071 | -0.823127 | 1.64E-53 | -1.69E-46 |
| MS.gene05686 | MS.gene51071 | -0.81592 | 7.22E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene51071 | -0.858164 | 9.94E-63 | -1.69E-46 |
| MS.gene057684 | MS.gene51071 | 0.805299 | 1.43E-49 | -1.69E-46 |
| MS.gene05985 | MS.gene51071 | 0.860443 | 2.06E-63 | -1.69E-46 |
| MS.gene060525 | MS.gene51071 | -0.828122 | 1.07E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51071 | MS.gene51072 | PPI |
| MS.gene51071 | MS.gene001161 | PPI |
| MS.gene51071 | MS.gene51038 | PPI |
| MS.gene51071 | MS.gene51041 | PPI |
| MS.gene51071 | MS.gene033167 | PPI |
| MS.gene51071 | MS.gene51040 | PPI |
| MS.gene51041 | MS.gene51071 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51071.t1 | MTR_4g107630 | 90.278 | 216 | 18 | 1 | 4 | 216 | 1 | 216 | 1.69e-136 | 382 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51071.t1 | AT5G62720 | 56.322 | 174 | 73 | 2 | 45 | 216 | 58 | 230 | 5.51e-67 | 206 |
| MS.gene51071.t1 | AT3G47980 | 62.577 | 163 | 61 | 0 | 54 | 216 | 77 | 239 | 1.58e-65 | 203 |
| MS.gene51071.t1 | AT5G62720 | 55.072 | 138 | 59 | 2 | 45 | 180 | 58 | 194 | 2.28e-46 | 152 |
Find 62 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTTCAACAGTTGAGTTTC+TGG | 0.125934 | 8.2:-18060650 | MS.gene51071:CDS |
| CGGTGGTAGTACCAAATTTA+TGG | 0.147539 | 8.2:-18062149 | MS.gene51071:CDS |
| GCAGAAGTACAGTATGTTTA+TGG | 0.153489 | 8.2:-18060932 | MS.gene51071:intron |
| ATGTCTTCTGTAATTGTTTC+CGG | 0.215984 | 8.2:-18062169 | MS.gene51071:CDS |
| GGAATGAGTGGAAGAGGATT+TGG | 0.281069 | 8.2:+18061970 | None:intergenic |
| ATTTGCAGCAATGGCCATAT+TGG | 0.282337 | 8.2:-18061360 | MS.gene51071:CDS |
| TTGTGCAGCCATTGGTGTTT+TGG | 0.288656 | 8.2:-18060899 | MS.gene51071:CDS |
| CTGATCCATCTTTCCCAATA+TGG | 0.299857 | 8.2:+18061346 | None:intergenic |
| ACGTGGCCTCACCCTCCATC+TGG | 0.304995 | 8.2:-18062009 | MS.gene51071:CDS |
| TGACAACGGTACCATAAATT+TGG | 0.325955 | 8.2:+18062138 | None:intergenic |
| AAGAAGGAATGTGATTATTA+AGG | 0.343485 | 8.2:-18062041 | MS.gene51071:CDS |
| CAATGGCTGCACAACCTACT+TGG | 0.345485 | 8.2:+18060908 | None:intergenic |
| TTTGCAGCAATGGCCATATT+GGG | 0.365439 | 8.2:-18061359 | MS.gene51071:CDS |
| CACCCTCAGCCCCTTCTGCC+CGG | 0.367068 | 8.2:-18061253 | MS.gene51071:CDS |
| CACCCTCCATCTGGGAGAAC+TGG | 0.369226 | 8.2:-18062000 | MS.gene51071:CDS |
| GAATGAGTGGAAGAGGATTT+GGG | 0.381725 | 8.2:+18061971 | None:intergenic |
| AAAACCAATCTCTTATTCTT+CGG | 0.383257 | 8.2:+18062085 | None:intergenic |
| ATTCCTTCAGTGACATTCTC+TGG | 0.388063 | 8.2:-18061952 | MS.gene51071:CDS |
| GACATTCTCTGGCCTTCTGC+AGG | 0.394844 | 8.2:-18061941 | MS.gene51071:intron |
| AAACAATTACAGAAGACATT+TGG | 0.403022 | 8.2:+18062173 | None:intergenic |
| ATGTTAAAAGATGGTGATAA+TGG | 0.407105 | 8.2:+18062112 | None:intergenic |
| GGCAGAAGGGGCTGAGGGTG+AGG | 0.416383 | 8.2:+18061256 | None:intergenic |
| CAAACCGAAGAATAAGAGAT+TGG | 0.426795 | 8.2:-18062089 | MS.gene51071:CDS |
| TCAATCACAGTTGCACCATT+AGG | 0.429248 | 8.2:-18061302 | MS.gene51071:CDS |
| ACTGTGATTGAGAGTCCTTT+TGG | 0.443290 | 8.2:+18061314 | None:intergenic |
| GCACTCTTGGCTAGCAATCC+AGG | 0.449810 | 8.2:+18060859 | None:intergenic |
| TACCCGGGCAGAAGGGGCTG+AGG | 0.452991 | 8.2:+18061250 | None:intergenic |
| AGCAGCAACACTAGCACTCT+TGG | 0.457034 | 8.2:+18060846 | None:intergenic |
| TAGAATGCATCCTGCTGCCC+CGG | 0.459572 | 8.2:+18060614 | None:intergenic |
| ACCCTCAGCCCCTTCTGCCC+GGG | 0.469153 | 8.2:-18061252 | MS.gene51071:intron |
| ATTTGGGTTTGAAAGGAAGA+AGG | 0.469818 | 8.2:-18062057 | MS.gene51071:CDS |
| TTCGGTTTGATGTTAAAAGA+TGG | 0.478176 | 8.2:+18062103 | None:intergenic |
| CAAGTAGGTTGTGCAGCCAT+TGG | 0.487463 | 8.2:-18060907 | MS.gene51071:CDS |
| GATCAGTTATTGACACCAAA+AGG | 0.488111 | 8.2:-18061329 | MS.gene51071:CDS |
| GAAAAGCAATGGCATGCTTA+CGG | 0.488854 | 8.2:+18060686 | None:intergenic |
| AGAGCAGACACTGCTCCTAA+TGG | 0.490696 | 8.2:+18061287 | None:intergenic |
| ATCAGGGGCATTTGCAGCAA+TGG | 0.492588 | 8.2:-18061369 | MS.gene51071:intron |
| CATAAATTTGGTACTACCAC+CGG | 0.501343 | 8.2:+18062150 | None:intergenic |
| AGGTTTCCAGTTCTCCCAGA+TGG | 0.502717 | 8.2:+18061994 | None:intergenic |
| TTAGATTATTTGGGTTTGAA+AGG | 0.508877 | 8.2:-18062064 | MS.gene51071:CDS |
| CGTGGCCTCACCCTCCATCT+GGG | 0.513595 | 8.2:-18062008 | MS.gene51071:CDS |
| TTTCCAGTTCTCCCAGATGG+AGG | 0.521215 | 8.2:+18061997 | None:intergenic |
| AATGGCCATATTGGGAAAGA+TGG | 0.522770 | 8.2:-18061351 | MS.gene51071:CDS |
| ACTGAAGGAATGAGTGGAAG+AGG | 0.523502 | 8.2:+18061964 | None:intergenic |
| AATAGTAGTACCCGGGCAGA+AGG | 0.525314 | 8.2:+18061242 | None:intergenic |
| AATGGCTGCACAACCTACTT+GGG | 0.529946 | 8.2:+18060909 | None:intergenic |
| TAGTAGTACCCGGGCAGAAG+GGG | 0.552816 | 8.2:+18061244 | None:intergenic |
| GTTCTCCCAGATGGAGGGTG+AGG | 0.554854 | 8.2:+18062003 | None:intergenic |
| GGATTTGCAATATTTGGACC+TGG | 0.557125 | 8.2:-18060877 | MS.gene51071:CDS |
| TTCCAGTTCTCCCAGATGGA+GGG | 0.561076 | 8.2:+18061998 | None:intergenic |
| ATAGTAGTACCCGGGCAGAA+GGG | 0.569371 | 8.2:+18061243 | None:intergenic |
| AGTATGTTTATGGCCCAAGT+AGG | 0.569674 | 8.2:-18060922 | MS.gene51071:CDS |
| AATGTCACTGAAGGAATGAG+TGG | 0.582208 | 8.2:+18061958 | None:intergenic |
| AGAATGCATCCTGCTGCCCC+GGG | 0.589508 | 8.2:+18060615 | None:intergenic |
| ACCCGGGCAGAAGGGGCTGA+GGG | 0.592231 | 8.2:+18061251 | None:intergenic |
| ACAGCATCAATGAAAAGCAA+TGG | 0.607570 | 8.2:+18060675 | None:intergenic |
| TGCAAATCCCAAAACACCAA+TGG | 0.618790 | 8.2:+18060891 | None:intergenic |
| AGGCCAGAGAATGTCACTGA+AGG | 0.622535 | 8.2:+18061949 | None:intergenic |
| TCTTCTGTAATTGTTTCCGG+TGG | 0.651325 | 8.2:-18062166 | MS.gene51071:CDS |
| TGAGTGGAAGAGGATTTGGG+AGG | 0.662152 | 8.2:+18061974 | None:intergenic |
| TATTAAGGCATCAAGCGACG+TGG | 0.697251 | 8.2:-18062026 | MS.gene51071:CDS |
| GGTGATAATGGTAATGACAA+CGG | 0.705821 | 8.2:+18062124 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAGAATAATAAATAAAAAAT+AGG | + | chr8.2:18060867-18060886 | None:intergenic | 10.0% |
| !! | GATAAATATCATTAATACAA+TGG | - | chr8.2:18061589-18061608 | MS.gene51071:intron | 15.0% |
| !! | TAAATTCATCTTTCAAATAA+AGG | + | chr8.2:18060889-18060908 | None:intergenic | 15.0% |
| !!! | AAAAAACTTTTTAAATGTGA+AGG | - | chr8.2:18060943-18060962 | MS.gene51071:intron | 15.0% |
| !!! | ATTATAATACTATTTCTTTG+AGG | + | chr8.2:18061110-18061129 | None:intergenic | 15.0% |
| !!! | TATTACTACTATTTCTTTTT+AGG | - | chr8.2:18061557-18061576 | MS.gene51071:intron | 15.0% |
| !! | ACATAATAGTGAGATAAAAT+TGG | + | chr8.2:18060985-18061004 | None:intergenic | 20.0% |
| !! | TAATGATATTTATCCCATTA+AGG | + | chr8.2:18061583-18061602 | None:intergenic | 20.0% |
| !! | TGTGTTTATAAAAATCATCA+GGG | - | chr8.2:18061395-18061414 | MS.gene51071:intron | 20.0% |
| !!! | AGATTGGTTTTAGATTATTT+GGG | - | chr8.2:18060707-18060726 | MS.gene51071:intron | 20.0% |
| !!! | TAATTTTATCAAATCATTGC+CGG | + | chr8.2:18061653-18061672 | None:intergenic | 20.0% |
| !!! | TTTGTTGGTTTAATATTTGA+TGG | + | chr8.2:18062056-18062075 | None:intergenic | 20.0% |
| ! | AAAACCAATCTCTTATTCTT+CGG | + | chr8.2:18060698-18060717 | None:intergenic | 25.0% |
| ! | AAACAATTACAGAAGACATT+TGG | + | chr8.2:18060610-18060629 | None:intergenic | 25.0% |
| ! | AAGAAGGAATGTGATTATTA+AGG | - | chr8.2:18060739-18060758 | MS.gene51071:intron | 25.0% |
| ! | ATGTTAAAAGATGGTGATAA+TGG | + | chr8.2:18060671-18060690 | None:intergenic | 25.0% |
| ! | GTGTGTTTATAAAAATCATC+AGG | - | chr8.2:18061394-18061413 | MS.gene51071:intron | 25.0% |
| ! | GTGTTTATAAAAATCATCAG+GGG | - | chr8.2:18061396-18061415 | MS.gene51071:intron | 25.0% |
| ! | TAAACACACATCAAAACAAA+AGG | + | chr8.2:18061383-18061402 | None:intergenic | 25.0% |
| ! | TAATAAGTATATCCATCTTG+TGG | + | chr8.2:18061038-18061057 | None:intergenic | 25.0% |
| ! | TTTAAATTATCTCCACAAGA+TGG | - | chr8.2:18061023-18061042 | MS.gene51071:intron | 25.0% |
| ! | TTTCATAAAATATGCTCTTG+TGG | + | chr8.2:18061137-18061156 | None:intergenic | 25.0% |
| !! | AATAACTTCTCATTTGAAAC+TGG | + | chr8.2:18061213-18061232 | None:intergenic | 25.0% |
| !! | GAGTACTTGTCAATAATTTT+TGG | - | chr8.2:18061327-18061346 | MS.gene51071:CDS | 25.0% |
| !! | TTAGATTATTTGGGTTTGAA+AGG | - | chr8.2:18060716-18060735 | MS.gene51071:intron | 25.0% |
| !!! | AAACAAAAGCATTAAGTAGT+AGG | + | chr8.2:18061774-18061793 | None:intergenic | 25.0% |
| !!! | AAGTTTTTTTTATACCGTTG+TGG | + | chr8.2:18060932-18060951 | None:intergenic | 25.0% |
| !!! | ATTTCTTTTTAGGCCTTAAT+GGG | - | chr8.2:18061567-18061586 | MS.gene51071:intron | 25.0% |
| !!! | GAGATTGGTTTTAGATTATT+TGG | - | chr8.2:18060706-18060725 | MS.gene51071:intron | 25.0% |
| !!! | TATTTCTTTTTAGGCCTTAA+TGG | - | chr8.2:18061566-18061585 | MS.gene51071:intron | 25.0% |
| AACATTGAAGCAAAAATACC+TGG | + | chr8.2:18061999-18062018 | None:intergenic | 30.0% | |
| ACATTGAAGCAAAAATACCT+GGG | + | chr8.2:18061998-18062017 | None:intergenic | 30.0% | |
| ATAGTAGTAATAGTAGTACC+CGG | + | chr8.2:18061549-18061568 | None:intergenic | 30.0% | |
| ATGTCTTCTGTAATTGTTTC+CGG | - | chr8.2:18060611-18060630 | MS.gene51071:CDS | 30.0% | |
| ATTACTATTCTATGCCACAA+CGG | - | chr8.2:18060915-18060934 | MS.gene51071:CDS | 30.0% | |
| ! | CACGATATCACAAATTTTGT+TGG | + | chr8.2:18062071-18062090 | None:intergenic | 30.0% |
| ! | TTCGGTTTGATGTTAAAAGA+TGG | + | chr8.2:18060680-18060699 | None:intergenic | 30.0% |
| !!! | GTTTTGGGATTTGCAATATT+TGG | - | chr8.2:18061897-18061916 | MS.gene51071:intron | 30.0% |
| AAAAAATAGGAACCTGCAGA+AGG | + | chr8.2:18060854-18060873 | None:intergenic | 35.0% | |
| ACAGCATCAATGAAAAGCAA+TGG | + | chr8.2:18062108-18062127 | None:intergenic | 35.0% | |
| ACTTCTGCATAATCACACTT+AGG | + | chr8.2:18061836-18061855 | None:intergenic | 35.0% | |
| AGTTTCAACAGTTGAGTTTC+TGG | - | chr8.2:18062130-18062149 | MS.gene51071:CDS | 35.0% | |
| ATTGAAGCAAAAATACCTGG+GGG | + | chr8.2:18061996-18062015 | None:intergenic | 35.0% | |
| CAAACCGAAGAATAAGAGAT+TGG | - | chr8.2:18060691-18060710 | MS.gene51071:intron | 35.0% | |
| CATAAATTTGGTACTACCAC+CGG | + | chr8.2:18060633-18060652 | None:intergenic | 35.0% | |
| CATTGAAGCAAAAATACCTG+GGG | + | chr8.2:18061997-18062016 | None:intergenic | 35.0% | |
| GATCAGTTATTGACACCAAA+AGG | - | chr8.2:18061451-18061470 | MS.gene51071:intron | 35.0% | |
| GCATATCAATGTTGTGATGA+TGG | + | chr8.2:18061268-18061287 | None:intergenic | 35.0% | |
| TAGTAGTAATAGTAGTACCC+GGG | + | chr8.2:18061548-18061567 | None:intergenic | 35.0% | |
| TGACAACGGTACCATAAATT+TGG | + | chr8.2:18060645-18060664 | None:intergenic | 35.0% | |
| ! | ATTTGGGTTTGAAAGGAAGA+AGG | - | chr8.2:18060723-18060742 | MS.gene51071:intron | 35.0% |
| ! | GCAGAAGTACAGTATGTTTA+TGG | - | chr8.2:18061848-18061867 | MS.gene51071:intron | 35.0% |
| ! | TTCTGGTATGTTTTGTATCC+CGG | - | chr8.2:18062147-18062166 | MS.gene51071:CDS | 35.0% |
| !! | GGTGATAATGGTAATGACAA+CGG | + | chr8.2:18060659-18060678 | None:intergenic | 35.0% |
| AATGGCCATATTGGGAAAGA+TGG | - | chr8.2:18061429-18061448 | MS.gene51071:intron | 40.0% | |
| AATGTCACTGAAGGAATGAG+TGG | + | chr8.2:18060825-18060844 | None:intergenic | 40.0% | |
| AGTATGTTTATGGCCCAAGT+AGG | - | chr8.2:18061858-18061877 | MS.gene51071:intron | 40.0% | |
| ATTCCTTCAGTGACATTCTC+TGG | - | chr8.2:18060828-18060847 | MS.gene51071:CDS | 40.0% | |
| ATTTGCAGCAATGGCCATAT+TGG | - | chr8.2:18061420-18061439 | MS.gene51071:intron | 40.0% | |
| CGGTGGTAGTACCAAATTTA+TGG | - | chr8.2:18060631-18060650 | MS.gene51071:CDS | 40.0% | |
| CTGATCCATCTTTCCCAATA+TGG | + | chr8.2:18061437-18061456 | None:intergenic | 40.0% | |
| GAAAAGCAATGGCATGCTTA+CGG | + | chr8.2:18062097-18062116 | None:intergenic | 40.0% | |
| GAATGAGTGGAAGAGGATTT+GGG | + | chr8.2:18060812-18060831 | None:intergenic | 40.0% | |
| GGATTTGCAATATTTGGACC+TGG | - | chr8.2:18061903-18061922 | MS.gene51071:intron | 40.0% | |
| TCAATCACAGTTGCACCATT+AGG | - | chr8.2:18061478-18061497 | MS.gene51071:intron | 40.0% | |
| TCTTCTGTAATTGTTTCCGG+TGG | - | chr8.2:18060614-18060633 | MS.gene51071:CDS | 40.0% | |
| TGCAAATCCCAAAACACCAA+TGG | + | chr8.2:18061892-18061911 | None:intergenic | 40.0% | |
| TTGAAGCAAAAATACCTGGG+GGG | + | chr8.2:18061995-18062014 | None:intergenic | 40.0% | |
| TTTGCAGCAATGGCCATATT+GGG | - | chr8.2:18061421-18061440 | MS.gene51071:intron | 40.0% | |
| ! | ACTGTGATTGAGAGTCCTTT+TGG | + | chr8.2:18061469-18061488 | None:intergenic | 40.0% |
| ! | TCTGGTATGTTTTGTATCCC+GGG | - | chr8.2:18062148-18062167 | MS.gene51071:CDS | 40.0% |
| AATGGCTGCACAACCTACTT+GGG | + | chr8.2:18061874-18061893 | None:intergenic | 45.0% | |
| ACTGAAGGAATGAGTGGAAG+AGG | + | chr8.2:18060819-18060838 | None:intergenic | 45.0% | |
| CGACACTGATACATTGACAC+CGG | - | chr8.2:18061631-18061650 | MS.gene51071:intron | 45.0% | |
| GGAATGAGTGGAAGAGGATT+TGG | + | chr8.2:18060813-18060832 | None:intergenic | 45.0% | |
| ! | CTGGTATGTTTTGTATCCCG+GGG | - | chr8.2:18062149-18062168 | MS.gene51071:CDS | 45.0% |
| ! | TATTAAGGCATCAAGCGACG+TGG | - | chr8.2:18060754-18060773 | MS.gene51071:intron | 45.0% |
| !! | TGTGCAGCCATTGGTGTTTT+GGG | - | chr8.2:18061882-18061901 | MS.gene51071:intron | 45.0% |
| !! | TTGTGCAGCCATTGGTGTTT+TGG | - | chr8.2:18061881-18061900 | MS.gene51071:intron | 45.0% |
| AATAGTAGTACCCGGGCAGA+AGG | + | chr8.2:18061541-18061560 | None:intergenic | 50.0% | |
| AGAGCAGACACTGCTCCTAA+TGG | + | chr8.2:18061496-18061515 | None:intergenic | 50.0% | |
| AGCAGCAACACTAGCACTCT+TGG | + | chr8.2:18061937-18061956 | None:intergenic | 50.0% | |
| AGGCCAGAGAATGTCACTGA+AGG | + | chr8.2:18060834-18060853 | None:intergenic | 50.0% | |
| AGGTTTCCAGTTCTCCCAGA+TGG | + | chr8.2:18060789-18060808 | None:intergenic | 50.0% | |
| ATAGTAGTACCCGGGCAGAA+GGG | + | chr8.2:18061540-18061559 | None:intergenic | 50.0% | |
| CAAGTAGGTTGTGCAGCCAT+TGG | - | chr8.2:18061873-18061892 | MS.gene51071:intron | 50.0% | |
| CAATGGCTGCACAACCTACT+TGG | + | chr8.2:18061875-18061894 | None:intergenic | 50.0% | |
| TGAGTGGAAGAGGATTTGGG+AGG | + | chr8.2:18060809-18060828 | None:intergenic | 50.0% | |
| TTCCAGTTCTCCCAGATGGA+GGG | + | chr8.2:18060785-18060804 | None:intergenic | 50.0% | |
| TTTCCAGTTCTCCCAGATGG+AGG | + | chr8.2:18060786-18060805 | None:intergenic | 50.0% | |
| !! | ATCAGGGGCATTTGCAGCAA+TGG | - | chr8.2:18061411-18061430 | MS.gene51071:intron | 50.0% |
| GCACTCTTGGCTAGCAATCC+AGG | + | chr8.2:18061924-18061943 | None:intergenic | 55.0% | |
| TAGAATGCATCCTGCTGCCC+CGG | + | chr8.2:18062169-18062188 | None:intergenic | 55.0% | |
| TAGTAGTACCCGGGCAGAAG+GGG | + | chr8.2:18061539-18061558 | None:intergenic | 55.0% | |
| ! | GACATTCTCTGGCCTTCTGC+AGG | - | chr8.2:18060839-18060858 | MS.gene51071:CDS | 55.0% |
| AGAATGCATCCTGCTGCCCC+GGG | + | chr8.2:18062168-18062187 | None:intergenic | 60.0% | |
| CACCCTCCATCTGGGAGAAC+TGG | - | chr8.2:18060780-18060799 | MS.gene51071:intron | 60.0% | |
| GTTCTCCCAGATGGAGGGTG+AGG | + | chr8.2:18060780-18060799 | None:intergenic | 60.0% | |
| ! | ACTGACTCTGTTCACCCCCC+AGG | - | chr8.2:18061978-18061997 | MS.gene51071:CDS | 60.0% |
| ! | GTTTTGTATCCCGGGGCAGC+AGG | - | chr8.2:18062156-18062175 | MS.gene51071:CDS | 60.0% |
| ACGTGGCCTCACCCTCCATC+TGG | - | chr8.2:18060771-18060790 | MS.gene51071:intron | 65.0% | |
| CGTGGCCTCACCCTCCATCT+GGG | - | chr8.2:18060772-18060791 | MS.gene51071:intron | 65.0% | |
| ACCCGGGCAGAAGGGGCTGA+GGG | + | chr8.2:18061532-18061551 | None:intergenic | 70.0% | |
| ACCCTCAGCCCCTTCTGCCC+GGG | - | chr8.2:18061528-18061547 | MS.gene51071:intron | 70.0% | |
| CACCCTCAGCCCCTTCTGCC+CGG | - | chr8.2:18061527-18061546 | MS.gene51071:intron | 70.0% | |
| GGCAGAAGGGGCTGAGGGTG+AGG | + | chr8.2:18061527-18061546 | None:intergenic | 70.0% | |
| TACCCGGGCAGAAGGGGCTG+AGG | + | chr8.2:18061533-18061552 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 18060602 | 18062200 | 18060602 | ID=MS.gene51071 |
| chr8.2 | mRNA | 18060602 | 18062200 | 18060602 | ID=MS.gene51071.t1;Parent=MS.gene51071 |
| chr8.2 | exon | 18061942 | 18062200 | 18061942 | ID=MS.gene51071.t1.exon1;Parent=MS.gene51071.t1 |
| chr8.2 | CDS | 18061942 | 18062200 | 18061942 | ID=cds.MS.gene51071.t1;Parent=MS.gene51071.t1 |
| chr8.2 | exon | 18061253 | 18061386 | 18061253 | ID=MS.gene51071.t1.exon2;Parent=MS.gene51071.t1 |
| chr8.2 | CDS | 18061253 | 18061386 | 18061253 | ID=cds.MS.gene51071.t1;Parent=MS.gene51071.t1 |
| chr8.2 | exon | 18060803 | 18060950 | 18060803 | ID=MS.gene51071.t1.exon3;Parent=MS.gene51071.t1 |
| chr8.2 | CDS | 18060803 | 18060950 | 18060803 | ID=cds.MS.gene51071.t1;Parent=MS.gene51071.t1 |
| chr8.2 | exon | 18060602 | 18060708 | 18060602 | ID=MS.gene51071.t1.exon4;Parent=MS.gene51071.t1 |
| chr8.2 | CDS | 18060602 | 18060708 | 18060602 | ID=cds.MS.gene51071.t1;Parent=MS.gene51071.t1 |
| Gene Sequence |
| Protein sequence |
